id int64 0 328k | repository_name stringlengths 7 58 | file_path stringlengths 9 302 | class_name stringlengths 5 256 | human_written_code stringlengths 16 2.16M | class_skeleton stringlengths 18 1.49M ⌀ | total_program_units int64 1 1.76k | total_doc_str int64 0 771 | AvgCountLine float64 0 7.89k | AvgCountLineBlank float64 0 297 | AvgCountLineCode float64 0 7.89k | AvgCountLineComment float64 0 7.89k | AvgCyclomatic float64 0 130 | CommentToCodeRatio float64 0 168 | CountClassBase float64 0 40 | CountClassCoupled float64 0 583 | CountClassCoupledModified float64 0 575 | CountClassDerived float64 0 5.35k | CountDeclInstanceMethod float64 0 529 | CountDeclInstanceVariable float64 0 296 | CountDeclMethod float64 0 599 | CountDeclMethodAll float64 0 1.12k | CountLine float64 1 40.4k | CountLineBlank float64 0 8.16k | CountLineCode float64 1 25.7k | CountLineCodeDecl float64 1 8.15k | CountLineCodeExe float64 0 24.2k | CountLineComment float64 0 16.5k | CountStmt float64 1 9.71k | CountStmtDecl float64 1 8.15k | CountStmtExe float64 0 9.69k | MaxCyclomatic float64 0 759 | MaxInheritanceTree float64 0 16 | MaxNesting float64 0 34 | SumCyclomatic float64 0 2.9k |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
328,200 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/context.py | dingent.core.context.AppContext | from .analytics_manager import AnalyticsManager
from .plugin_manager import PluginManager
from dingent.core.market_service import MarketService
from .resource_manager import ResourceManager
from .config_manager import ConfigManager
from .utils import find_project_root
from .log_manager import LogManager
from .assistant... |
class AppContext:
'''A container for all manager instances to handle dependency injection.'''
def __init__(self, project_root: Path | None=None):
pass
async def close(self):
'''Close all managers that require cleanup.'''
pass | 3 | 2 | 13 | 2 | 11 | 1 | 2 | 0.14 | 0 | 10 | 9 | 0 | 2 | 10 | 2 | 2 | 30 | 5 | 22 | 14 | 19 | 3 | 18 | 14 | 15 | 2 | 0 | 1 | 3 |
328,201 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/llm_manager.py | dingent.core.llm_manager.LLMManager | from pydantic import SecretStr
from dingent.core.log_manager import LogManager
from langchain.chat_models.base import BaseChatModel
from langchain_litellm import ChatLiteLLM
from typing import Any
class LLMManager:
"""
A class to manage and maintain instances of large language models (LLMs).
This class res... |
class LLMManager:
'''
A class to manage and maintain instances of large language models (LLMs).
This class responsibles for creating and caching LLM instances based on configuration,
ensuring efficient resource utilization, and providing a unified access point for the application.
'''
def __in... | 4 | 2 | 11 | 1 | 8 | 2 | 2 | 0.42 | 0 | 7 | 1 | 0 | 3 | 2 | 3 | 3 | 41 | 7 | 24 | 12 | 20 | 10 | 24 | 12 | 20 | 5 | 0 | 1 | 7 |
328,202 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/log_manager.py | dingent.core.log_manager.LogEntry | from typing import Any
from dataclasses import asdict, dataclass
from datetime import datetime
@dataclass
class LogEntry:
"""Structured log entry for dashboard display."""
timestamp: datetime
level: str
message: str
module: str
function: str
context: dict[str, Any] | None = None
correla... | @dataclass
class LogEntry:
'''Structured log entry for dashboard display.'''
def to_dict(self) -> dict[str, Any]:
'''Convert log entry to dictionary.'''
pass | 3 | 2 | 5 | 0 | 4 | 1 | 1 | 0.17 | 0 | 3 | 0 | 0 | 1 | 0 | 1 | 1 | 16 | 2 | 12 | 5 | 10 | 2 | 12 | 5 | 10 | 1 | 0 | 0 | 1 |
328,203 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/log_manager.py | dingent.core.log_manager.LogManager | from typing import Any
import threading
from loguru import logger
from collections import deque
class LogManager:
"""
Enhanced logging manager that captures structured logs for dashboard display.
Features:
- In-memory log storage with configurable retention
- Structured logging with context and co... |
class LogManager:
'''
Enhanced logging manager that captures structured logs for dashboard display.
Features:
- In-memory log storage with configurable retention
- Structured logging with context and correlation IDs
- Thread-safe operations
- Dashboard integration ready
'''
def __i... | 9 | 8 | 16 | 2 | 10 | 4 | 2 | 0.54 | 0 | 7 | 1 | 0 | 7 | 3 | 7 | 7 | 130 | 24 | 69 | 24 | 60 | 37 | 55 | 23 | 46 | 5 | 0 | 1 | 17 |
328,204 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/market_service.py | dingent.core.market_service.MarketItem | from pydantic import BaseModel, model_validator
from typing import Any
class MarketItem(BaseModel):
id: str
name: str
description: str | None = None
version: str | None = None
author: str | None = None
category: MarketItemCategory
tags: list[str] = []
license: str | None = None
read... |
class MarketItem(BaseModel):
@model_validator(mode='before')
@classmethod
def _normalize_name_field(cls, data: Any) -> Any:
pass | 4 | 0 | 7 | 1 | 6 | 0 | 3 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 83 | 27 | 2 | 25 | 17 | 21 | 0 | 23 | 16 | 21 | 3 | 5 | 2 | 3 |
328,205 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/market_service.py | dingent.core.market_service.MarketItemCategory | from enum import Enum
class MarketItemCategory(str, Enum):
"""Enumeration for different categories of items in the Dingent Hub."""
PLUGIN = 'plugin'
ASSISTANT = 'assistant'
WORKFLOW = 'workflow'
ALL = 'all'
def __str__(self) -> str:
"""Return the string value of the enum member."""
... |
class MarketItemCategory(str, Enum):
'''Enumeration for different categories of items in the Dingent Hub.'''
def __str__(self) -> str:
'''Return the string value of the enum member.'''
pass | 2 | 2 | 3 | 0 | 2 | 1 | 1 | 0.29 | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 116 | 11 | 2 | 7 | 6 | 5 | 2 | 7 | 6 | 5 | 1 | 4 | 0 | 1 |
328,206 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/market_service.py | dingent.core.market_service.MarketMetadata | from pydantic import BaseModel, model_validator
class MarketMetadata(BaseModel):
version: str
updated_at: str
categories: dict[str, int] |
class MarketMetadata(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 4 | 0 | 4 | 1 | 3 | 0 | 4 | 1 | 3 | 0 | 5 | 0 | 0 |
328,207 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/market_service.py | dingent.core.market_service.MarketService | import toml
from typing import Any
from packaging.version import InvalidVersion, Version
import os
import asyncio
import httpx
from dingent.core.log_manager import LogManager
from pathlib import Path
from async_lru import alru_cache
import json
class MarketService:
"""Service for interacting with the dingent-marke... |
class MarketService:
'''Service for interacting with the dingent-market repository.'''
def __init__(self, project_root: Path, log_manager: LogManager):
pass
async def close(self):
'''Close the HTTP session.'''
pass
async def _fetch_url_as_text(self, url: str) -> str | None:
... | 20 | 16 | 16 | 1 | 13 | 2 | 3 | 0.14 | 0 | 15 | 4 | 0 | 16 | 3 | 16 | 16 | 281 | 35 | 218 | 96 | 183 | 31 | 162 | 66 | 145 | 7 | 0 | 4 | 47 |
328,208 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/plugin_manager.py | dingent.core.plugin_manager.PluginInstance | from fastmcp.tools import Tool
from collections.abc import Callable
from pydantic import BaseModel, Field, PrivateAttr, SecretStr, ValidationError, create_model
from .types import ConfigItemDetail, ExecutionModel, PluginBase, PluginConfigSchema, PluginUserConfig, ToolResult
from typing import Any, Literal
from fastmcp.... |
class PluginInstance:
def __init__(self, name: str, mcp_client: Client, mcp: FastMCP, status: Literal['active', 'inactive', 'error'], manifest: 'PluginManifest', config: dict[str, Any] | None=None, transport=None):
pass
@classmethod
async def from_config(cls, manifest: 'PluginManifest', user_confi... | 9 | 0 | 23 | 2 | 21 | 0 | 4 | 0 | 0 | 10 | 2 | 0 | 5 | 0 | 6 | 6 | 152 | 15 | 137 | 50 | 113 | 0 | 91 | 32 | 84 | 13 | 0 | 2 | 22 |
328,209 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/plugin_manager.py | dingent.core.plugin_manager.PluginManager | from pathlib import Path
from .types import ConfigItemDetail, ExecutionModel, PluginBase, PluginConfigSchema, PluginUserConfig, ToolResult
from .resource_manager import ResourceManager
import shutil
from dingent.core.log_manager import LogManager
class PluginManager:
plugins: dict[str, PluginManifest] = {}
de... |
class PluginManager:
def __init__(self, plugin_dir: Path, resource_manager: ResourceManager, log_manager: LogManager):
pass
def _scan_and_register_plugins(self):
pass
def list_plugins(self) -> dict[str, PluginManifest]:
pass
async def create_instance(self, instance_settings:... | 9 | 1 | 8 | 0 | 7 | 1 | 2 | 0.13 | 0 | 10 | 5 | 0 | 8 | 3 | 8 | 8 | 74 | 11 | 56 | 21 | 47 | 7 | 51 | 20 | 42 | 6 | 0 | 2 | 16 |
328,210 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/plugin_manager.py | dingent.core.plugin_manager.PluginManifest | import toml
from fastmcp.server.middleware import Middleware, MiddlewareContext
from .types import ConfigItemDetail, ExecutionModel, PluginBase, PluginConfigSchema, PluginUserConfig, ToolResult
from pydantic import BaseModel, Field, PrivateAttr, SecretStr, ValidationError, create_model
from pathlib import Path
from col... |
class PluginManifest(PluginBase):
@classmethod
def from_toml(cls, toml_path: Path) -> 'PluginManifest':
pass
@property
def path(self) -> Path:
pass
async def create_instance(self, user_config: PluginUserConfig, log_method: Callable, middleware: Middleware | None=None) -> 'PluginIn... | 6 | 0 | 13 | 1 | 12 | 0 | 2 | 0 | 1 | 7 | 2 | 0 | 2 | 0 | 3 | 86 | 52 | 7 | 45 | 26 | 34 | 0 | 33 | 19 | 29 | 3 | 6 | 1 | 7 |
328,211 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/plugin_manager.py | dingent.core.plugin_manager.ResourceMiddleware | import json
from fastmcp.server.middleware import Middleware, MiddlewareContext
from typing import Any, Literal
from mcp.types import TextContent
from .types import ConfigItemDetail, ExecutionModel, PluginBase, PluginConfigSchema, PluginUserConfig, ToolResult
from collections.abc import Callable
from fastmcp.tools.tool... |
class ResourceMiddleware(Middleware):
'''
拦截工具调用结果，标准化为 ToolResult，并存储，仅向模型暴露最小必要文本。
'''
def __init__(self, resource_manager: ResourceManager, log_method: Callable):
pass
async def on_call_tool(self, context: MiddlewareContext, call_next):
pass | 3 | 1 | 30 | 5 | 21 | 4 | 4 | 0.26 | 1 | 6 | 1 | 0 | 2 | 2 | 2 | 2 | 65 | 12 | 42 | 13 | 39 | 11 | 33 | 12 | 30 | 7 | 1 | 3 | 8 |
328,212 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/resource_manager.py | dingent.core.resource_manager.ResourceManager | import pickle
from pathlib import Path
from .types import ToolResult
import uuid
from dingent.core.log_manager import LogManager
import sqlite3
class ResourceManager:
"""
使用 SQLite 存储 ToolResult（工具完整输出）的持久化资源管理器。
当达到最大容量时，会根据时间戳移除最旧的资源 (FIFO)。
"""
def __init__(self, log_manager: LogManager, store_... |
class ResourceManager:
'''
使用 SQLite 存储 ToolResult（工具完整输出）的持久化资源管理器。
当达到最大容量时，会根据时间戳移除最旧的资源 (FIFO)。
'''
def __init__(self, log_manager: LogManager, store_path: str | Path, max_size: int=100):
pass
def _initialize_db(self):
'''Create the resources table if it doesn't exist.'''
... | 10 | 8 | 11 | 1 | 8 | 2 | 2 | 0.29 | 0 | 6 | 2 | 0 | 9 | 4 | 9 | 9 | 114 | 17 | 76 | 24 | 66 | 22 | 55 | 24 | 45 | 3 | 0 | 3 | 14 |
328,213 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/secret_manager.py | dingent.core.secret_manager.SecretManager | import keyring.errors
import keyring
from cryptography.fernet import Fernet
from pathlib import Path
import json
class SecretManager:
"""
一个健壮的密钥管理器，自动处理 keyring 的可用性。
如果 keyring 可用，则使用它。
如果 keyring 不可用（例如在 WSL/Docker 中），则回退到一个本地加密文件。
"""
def __init__(self, project_root: Path):
self._k... |
class SecretManager:
'''
一个健壮的密钥管理器，自动处理 keyring 的可用性。
如果 keyring 可用，则使用它。
如果 keyring 不可用（例如在 WSL/Docker 中），则回退到一个本地加密文件。
'''
def __init__(self, project_root: Path):
pass
def _check_keyring_availability(self) -> bool:
'''在启动时检查 keyring 后端是否可用。'''
pass
def _ini... | 8 | 7 | 10 | 1 | 8 | 2 | 2 | 0.29 | 0 | 7 | 0 | 0 | 7 | 3 | 7 | 7 | 84 | 13 | 56 | 22 | 48 | 16 | 54 | 21 | 46 | 4 | 0 | 2 | 14 |
328,214 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/settings.py | dingent.core.settings.AppSettings | import tomlkit
from loguru import logger
from .types import AssistantBase, PluginUserConfig, Workflow
from pydantic import BaseModel, ConfigDict, Field, SecretStr
class AppSettings(BaseModel):
model_config = ConfigDict(env_prefix='DINGENT_', populate_by_name=True, extra='ignore')
assistants: list[AssistantSett... |
class AppSettings(BaseModel):
def save(self):
pass | 2 | 0 | 14 | 0 | 14 | 0 | 3 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 83 | 23 | 1 | 22 | 12 | 20 | 0 | 21 | 12 | 19 | 3 | 5 | 1 | 3 |
328,215 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/settings.py | dingent.core.settings.AssistantSettings | from .types import AssistantBase, PluginUserConfig, Workflow
import uuid
from pydantic import BaseModel, ConfigDict, Field, SecretStr
class AssistantSettings(AssistantBase):
id: str = Field(default_factory=lambda: str(uuid.uuid4()), description='Unique identifier for the assistant.')
plugins: list[PluginUserCo... |
class AssistantSettings(AssistantBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 83 | 3 | 0 | 3 | 2 | 2 | 0 | 3 | 2 | 2 | 0 | 6 | 0 | 0 |
328,216 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/settings.py | dingent.core.settings.LLMSettings | from pydantic import BaseModel, ConfigDict, Field, SecretStr
class LLMSettings(BaseModel):
model: str = Field('gpt-4.1', description='LLM model name.')
provider: str | None = Field(None, description='Provider name.')
base_url: str | None = Field(None, description='Base URL.')
api_key: SecretStr | None ... |
class LLMSettings(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 5 | 4 | 0 | 5 | 5 | 4 | 0 | 5 | 0 | 0 |
328,217 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/settings.py | dingent.core.settings.TomlConfigSettingsSource | from typing import Any
from pydantic.fields import FieldInfo
from loguru import logger
import tomlkit
from pathlib import Path
from pydantic_settings import BaseSettings, PydanticBaseSettingsSource
from .utils import find_project_root
class TomlConfigSettingsSource(PydanticBaseSettingsSource):
def __init__(self, ... |
class TomlConfigSettingsSource(PydanticBaseSettingsSource):
def __init__(self, settings_cls: type[BaseSettings]):
pass
def get_field_value(self, field: FieldInfo, field_name: str) -> tuple[Any, str, bool]:
pass
def __call__(self) -> dict[str, Any]:
pass | 4 | 0 | 6 | 0 | 6 | 0 | 2 | 0 | 1 | 9 | 0 | 0 | 3 | 2 | 3 | 3 | 22 | 2 | 20 | 8 | 16 | 0 | 19 | 8 | 15 | 2 | 1 | 1 | 6 |
328,218 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.AssistantBase | from typing import Any, Literal, TypeVar
from pydantic import BaseModel, Field, FilePath, model_validator
class AssistantBase(BaseModel):
id: str = Field(..., description='The unique and permanent ID for the assistant.')
name: str = Field(..., description='The display name of the assistant.')
description: ... |
class AssistantBase(BaseModel):
@model_validator(mode='before')
@classmethod
def _normalize_and_generate_id(cls, data: Any) -> Any:
pass | 4 | 0 | 15 | 3 | 8 | 4 | 4 | 0.24 | 1 | 2 | 0 | 3 | 0 | 0 | 1 | 83 | 25 | 4 | 17 | 8 | 13 | 4 | 15 | 7 | 13 | 4 | 5 | 2 | 4 |
328,219 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.AssistantCreate | class AssistantCreate(AssistantBase):
pass | class AssistantCreate(AssistantBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 83 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 6 | 0 | 0 |
328,220 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.AssistantUpdate | from pydantic import BaseModel, Field, FilePath, model_validator
class AssistantUpdate(BaseModel):
name: str | None = None
description: str | None = None
plugins: list[PluginUserConfig] | None = None
version: str | float | None = None
spec_version: str | float | None = None
enabled: bool | None... |
class AssistantUpdate(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 82 | 7 | 0 | 7 | 7 | 6 | 0 | 7 | 7 | 6 | 0 | 5 | 0 | 0 |
328,221 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.ConfigItemDetail | from typing import Any, Literal, TypeVar
from pydantic import BaseModel, Field, FilePath, model_validator
class ConfigItemDetail(PluginConfigSchema):
"""Represents a single configuration item with its schema and value."""
value: Any | None = Field(None, description='用户设置的当前值') |
class ConfigItemDetail(PluginConfigSchema):
'''Represents a single configuration item with its schema and value.'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0.5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 4 | 1 | 2 | 2 | 1 | 1 | 2 | 2 | 1 | 0 | 6 | 0 | 0 |
328,222 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.ExecutionModel | from pydantic import BaseModel, Field, FilePath, model_validator
from typing import Any, Literal, TypeVar
class ExecutionModel(BaseModel):
mode: Literal['local', 'remote'] = Field(..., description="运行模式: 'local' 或 'remote'")
url: str | None = None
script_path: str | None = Field(None, description='插件管理器需要运... |
class ExecutionModel(BaseModel):
@model_validator(mode='after')
def check_exclusive_execution_mode(self) -> 'ExecutionModel':
pass | 3 | 0 | 2 | 0 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 83 | 9 | 1 | 8 | 7 | 5 | 0 | 7 | 6 | 5 | 1 | 5 | 0 | 1 |
328,223 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.MarkdownPayload | from typing import Any, Literal, TypeVar
class MarkdownPayload(ToolDisplayPayloadBase):
type: Literal['markdown'] = 'markdown'
content: str |
class MarkdownPayload(ToolDisplayPayloadBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 3 | 0 | 3 | 2 | 2 | 0 | 3 | 2 | 2 | 0 | 6 | 0 | 0 |
328,224 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.PluginBase | from typing import Any, Literal, TypeVar
from pydantic import BaseModel, Field, FilePath, model_validator
class PluginBase(BaseModel):
id: str = Field(..., description='插件的唯一永久ID')
name: str = Field(..., description='插件的显示名称')
description: str = Field(..., description='插件描述')
version: str | float = Fie... |
class PluginBase(BaseModel):
@model_validator(mode='before')
@classmethod
def _normalize_and_generate_id(cls, data: Any) -> Any:
pass | 4 | 0 | 15 | 3 | 8 | 4 | 4 | 0.33 | 1 | 2 | 0 | 1 | 0 | 0 | 1 | 83 | 26 | 6 | 15 | 7 | 11 | 5 | 13 | 6 | 11 | 4 | 5 | 2 | 4 |
328,225 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.PluginConfigSchema | from pydantic import BaseModel, Field, FilePath, model_validator
from typing import Any, Literal, TypeVar
class PluginConfigSchema(BaseModel):
name: str = Field(..., description='配置项的名称 (环境变量名)')
type: Literal['string', 'float', 'integer', 'bool'] = Field(..., description="配置项的期望类型 (e.g., 'string', 'number')")... |
class PluginConfigSchema(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 82 | 7 | 0 | 7 | 7 | 6 | 0 | 7 | 7 | 6 | 0 | 5 | 0 | 0 |
328,226 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.PluginUserConfig | from pydantic import BaseModel, Field, FilePath, model_validator
class PluginUserConfig(BaseModel):
plugin_id: str
tools_default_enabled: bool = True
enabled: bool = True
tools: list[ToolOverrideConfig] | None = None
config: dict | None = None |
class PluginUserConfig(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 82 | 6 | 0 | 6 | 5 | 5 | 0 | 6 | 5 | 5 | 0 | 5 | 0 | 0 |
328,227 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.TablePayload | from typing import Any, Literal, TypeVar
class TablePayload(ToolDisplayPayloadBase):
type: Literal['table'] = 'table'
columns: list[str]
rows: list[dict]
title: str = '' |
class TablePayload(ToolDisplayPayloadBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 3 | 4 | 0 | 5 | 3 | 4 | 0 | 6 | 0 | 0 |
328,228 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.ToolConfigModel | from pydantic import BaseModel, Field, FilePath, model_validator
class ToolConfigModel(BaseModel):
schema_path: FilePath = Field(..., description='指向一个包含用户配置Pydantic类的Python文件') |
class ToolConfigModel(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 2 | 0 | 2 | 2 | 1 | 0 | 2 | 2 | 1 | 0 | 5 | 0 | 0 |
328,229 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.ToolDisplayPayloadBase | from pydantic import BaseModel, Field, FilePath, model_validator
class ToolDisplayPayloadBase(BaseModel):
"""前端展示用的 Payload 基类"""
type: str |
class ToolDisplayPayloadBase(BaseModel):
'''前端展示用的 Payload 基类'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0.5 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 82 | 4 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 5 | 0 | 0 |
328,230 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.ToolOverrideConfig | from pydantic import BaseModel, Field, FilePath, model_validator
class ToolOverrideConfig(BaseModel):
name: str
enabled: bool = True
description: str | None = None |
class ToolOverrideConfig(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 4 | 0 | 4 | 3 | 3 | 0 | 4 | 3 | 3 | 0 | 5 | 0 | 0 |
328,231 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.ToolResult | from pydantic import BaseModel, Field, FilePath, model_validator
from typing import Any, Literal, TypeVar
class ToolResult(BaseModel):
"""
标准化后的工具输出。
model_text: （必填）给模型使用的精简文本（总结 / 提炼 / 结构说明）
display: （选填）前端富展示用的 payload 数组
data: （选填）结构化原始数据（前端/工作流/自动化二次使用）
metadata: ... |
class ToolResult(BaseModel):
'''
标准化后的工具输出。
model_text: （必填）给模型使用的精简文本（总结 / 提炼 / 结构说明）
display: （选填）前端富展示用的 payload 数组
data: （选填）结构化原始数据（前端/工作流/自动化二次使用）
metadata: （选填）附加元信息（执行耗时、来源、版本等）
version: 协议/结构版本，方便将来升级
'''
@classmethod
def from_any(... | 3 | 2 | 66 | 6 | 50 | 10 | 16 | 0.32 | 1 | 6 | 2 | 0 | 0 | 0 | 1 | 83 | 84 | 9 | 57 | 17 | 54 | 18 | 40 | 15 | 38 | 16 | 5 | 4 | 16 |
328,232 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.Workflow | from pydantic import BaseModel, Field, FilePath, model_validator
class Workflow(WorkflowBase):
nodes: list[WorkflowNode] = Field(default_factory=list, description='Workflow nodes')
edges: list[WorkflowEdge] = Field(default_factory=list, description='Workflow edges')
created_at: str | None = Field(None, des... |
class Workflow(WorkflowBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 83 | 5 | 0 | 5 | 5 | 4 | 0 | 5 | 5 | 4 | 0 | 6 | 0 | 0 |
328,233 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowBase | from pydantic import BaseModel, Field, FilePath, model_validator
from typing import Any, Literal, TypeVar
class WorkflowBase(BaseModel):
id: str = Field(..., description='The unique and permanent ID for the workflow')
name: str = Field(..., description='The display name for the workflow')
description: str ... |
class WorkflowBase(BaseModel):
@model_validator(mode='before')
@classmethod
def _normalize_and_generate_id(cls, data: Any) -> Any:
pass | 4 | 0 | 17 | 3 | 8 | 6 | 4 | 0.43 | 1 | 2 | 0 | 2 | 0 | 0 | 1 | 83 | 24 | 4 | 14 | 6 | 10 | 6 | 12 | 5 | 10 | 4 | 5 | 2 | 4 |
328,234 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowCreate | class WorkflowCreate(WorkflowBase):
pass | class WorkflowCreate(WorkflowBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 83 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 6 | 0 | 0 |
328,235 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowEdge | from pydantic import BaseModel, Field, FilePath, model_validator
class WorkflowEdge(BaseModel):
id: str = Field(..., description='Unique edge identifier')
source: str = Field(..., description='Source node ID')
target: str = Field(..., description='Target node ID')
sourceHandle: str | None = Field(None,... |
class WorkflowEdge(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 8 | 0 | 8 | 7 | 7 | 0 | 8 | 7 | 7 | 0 | 5 | 0 | 0 |
328,236 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowEdgeData | from pydantic import BaseModel, Field, FilePath, model_validator
from typing import Any, Literal, TypeVar
class WorkflowEdgeData(BaseModel):
mode: Literal['single', 'bidirectional'] = Field('single', description='Edge mode') |
class WorkflowEdgeData(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 2 | 0 | 2 | 2 | 1 | 0 | 2 | 2 | 1 | 0 | 5 | 0 | 0 |
328,237 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowNode | from pydantic import BaseModel, Field, FilePath, model_validator
from typing import Any, Literal, TypeVar
class WorkflowNode(BaseModel):
id: str = Field(..., description='Unique node identifier')
type: Literal['assistant'] = Field('assistant', description='Node type')
position: dict[str, float] = Field(...... |
class WorkflowNode(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 4 | 4 | 0 | 5 | 4 | 4 | 0 | 5 | 0 | 0 |
328,238 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowNodeData | from pydantic import BaseModel, Field, FilePath, model_validator
class WorkflowNodeData(BaseModel):
assistantId: str = Field(..., description='Assistant ID referenced by this node')
assistantName: str = Field(..., description='Assistant name for display')
description: str | None = Field(None, description='... |
class WorkflowNodeData(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 5 | 4 | 0 | 5 | 5 | 4 | 0 | 5 | 0 | 0 |
328,239 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/types.py | dingent.core.types.WorkflowUpdate | from pydantic import BaseModel, Field, FilePath, model_validator
class WorkflowUpdate(BaseModel):
name: str | None = None
description: str | None = None
nodes: list[WorkflowNode] | None = None
edges: list[WorkflowEdge] | None = None |
class WorkflowUpdate(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 5 | 4 | 0 | 5 | 5 | 4 | 0 | 5 | 0 | 0 |
328,240 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/core/workflow_manager.py | dingent.core.workflow_manager.WorkflowManager | from pydantic import ValidationError
from datetime import UTC, datetime
from dingent.core.config_manager import ConfigManager
from dingent.core.settings import AppSettings
from dingent.core.log_manager import LogManager
from pathlib import Path
import json
from threading import RLock
from dingent.core.types import Work... |
class WorkflowManager:
'''
Manages workflow persistence (CRUD) + active workflow selection + (optional) runtime assistant instantiation.
Responsibilities:
- Load all workflow JSON definitions from config/workflows
- CRUD operations on workflows
- Track / persist current active workflow id... | 31 | 7 | 15 | 1 | 12 | 2 | 3 | 0.26 | 0 | 18 | 8 | 0 | 29 | 8 | 29 | 29 | 500 | 71 | 341 | 127 | 288 | 90 | 291 | 93 | 261 | 10 | 0 | 5 | 94 |
328,241 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/engine/graph.py | dingent.engine.graph.ConfigSchema | from typing import Annotated, Any, TypedDict
class ConfigSchema(TypedDict):
model_provider: str
model_name: str
default_route: str |
class ConfigSchema(TypedDict):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 4 | 1 | 3 | 0 | 4 | 1 | 3 | 0 | 1 | 0 | 0 |
328,242 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/engine/graph.py | dingent.engine.graph.MainState | from langgraph_swarm import SwarmState
from copilotkit import CopilotKitState
class MainState(CopilotKitState, SwarmState):
artifact_ids: list[str] |
class MainState(CopilotKitState, SwarmState):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 1 | 0 | 0 |
328,243 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/engine/graph_manager.py | dingent.engine.graph_manager.GraphCacheEntry | from langgraph.graph.state import CompiledStateGraph
from contextlib import AsyncExitStack
from dataclasses import dataclass
@dataclass
class GraphCacheEntry:
workflow_id: str
graph: CompiledStateGraph
stack: AsyncExitStack
checkpointer: object
default_active_agent: str | None
dirty: bool = Fal... | @dataclass
class GraphCacheEntry:
pass | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 0 | 9 | 4 | 8 | 0 | 9 | 4 | 8 | 0 | 0 | 0 | 0 |
328,244 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/engine/graph_manager.py | dingent.engine.graph_manager.GraphManager | from langgraph.graph import END, START, StateGraph
from collections.abc import Awaitable, Callable
from pathlib import Path
import asyncio
from langgraph.checkpoint.memory import InMemorySaver
from langgraph.graph.state import CompiledStateGraph
from contextlib import AsyncExitStack
from langgraph_swarm import create_s... |
class GraphManager:
'''
多 workflow 图缓存管理：
- 按 workflow_id 缓存编译后的 LangGraph
- 懒加载与按需重建
- 配置/Workflow 事件触发 dirty 标记
'''
def __init__(self, app_context: AppContext):
'''
Initializes the GraphManager with an explicit AppContext.
'''
pass
def _checkpoi... | 18 | 3 | 13 | 1 | 12 | 1 | 3 | 0.12 | 0 | 11 | 2 | 0 | 15 | 7 | 15 | 15 | 248 | 33 | 194 | 60 | 176 | 24 | 159 | 56 | 141 | 12 | 0 | 3 | 44 |
328,245 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/engine/simple_react_agent.py | dingent.engine.simple_react_agent.SimpleAgentState | from langchain_core.messages import AIMessage, BaseMessage, SystemMessage, ToolMessage
import operator
from typing import Annotated, Any, TypedDict
class SimpleAgentState(TypedDict, total=False):
messages: Annotated[list[BaseMessage], operator.add]
iteration: int
artifact_ids: list[str] = [] |
class SimpleAgentState(TypedDict, total=False):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0.25 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 4 | 2 | 3 | 1 | 4 | 2 | 3 | 0 | 1 | 0 | 0 |
328,246 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.AddPluginRequest | from typing import Any
from pydantic import BaseModel, Field
class AddPluginRequest(BaseModel):
plugin_id: str
config: dict[str, Any] | None = None
enabled: bool = True
tools_default_enabled: bool = True |
class AddPluginRequest(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 4 | 4 | 0 | 5 | 4 | 4 | 0 | 5 | 0 | 0 |
328,247 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.AppAdminDetail | from typing import Any
from pydantic import BaseModel, Field
class AppAdminDetail(BaseModel):
current_workflow: str | None = None
workflows: list[dict[str, str]] = Field(default_factory=list)
llm: dict[str, Any] |
class AppAdminDetail(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 4 | 0 | 4 | 3 | 3 | 0 | 4 | 3 | 3 | 0 | 5 | 0 | 0 |
328,248 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.AssistantAdminDetail | from dingent.core.types import AssistantBase, AssistantCreate, AssistantUpdate, ConfigItemDetail, PluginUserConfig
from pydantic import BaseModel, Field
class AssistantAdminDetail(AssistantBase):
id: str
status: str = Field(..., description='运行状态 (active/inactive/error)')
plugins: list[PluginAdminDetail] |
class AssistantAdminDetail(AssistantBase):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 83 | 4 | 0 | 4 | 2 | 3 | 0 | 4 | 2 | 3 | 0 | 6 | 0 | 0 |
328,249 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.AssistantCreateRequest | from dingent.core.types import AssistantBase, AssistantCreate, AssistantUpdate, ConfigItemDetail, PluginUserConfig
class AssistantCreateRequest(AssistantCreate):
pass |
class AssistantCreateRequest(AssistantCreate):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 83 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 7 | 0 | 0 |
328,250 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.AssistantUpdateRequest | from dingent.core.types import AssistantBase, AssistantCreate, AssistantUpdate, ConfigItemDetail, PluginUserConfig
class AssistantUpdateRequest(AssistantUpdate):
pass |
class AssistantUpdateRequest(AssistantUpdate):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 6 | 0 | 0 |
328,251 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.AssistantsBulkReplaceRequest | from dingent.core.types import AssistantBase, AssistantCreate, AssistantUpdate, ConfigItemDetail, PluginUserConfig
from pydantic import BaseModel, Field
class AssistantsBulkReplaceRequest(BaseModel):
assistants: list[AssistantCreate | AssistantUpdate | dict] |
class AssistantsBulkReplaceRequest(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 5 | 0 | 0 |
328,252 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.MarketDownloadRequest | from pydantic import BaseModel, Field
class MarketDownloadRequest(BaseModel):
item_id: str
category: str |
class MarketDownloadRequest(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 3 | 0 | 3 | 1 | 2 | 1 | 3 | 1 | 2 | 0 | 5 | 0 | 0 |
328,253 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.MarketDownloadResponse | from pydantic import BaseModel, Field
class MarketDownloadResponse(BaseModel):
success: bool
message: str
installed_path: str | None = None |
class MarketDownloadResponse(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 4 | 0 | 4 | 2 | 3 | 0 | 4 | 2 | 3 | 0 | 5 | 0 | 0 |
328,254 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.PluginAdminDetail | from dingent.core.types import AssistantBase, AssistantCreate, AssistantUpdate, ConfigItemDetail, PluginUserConfig
from pydantic import BaseModel, Field
class PluginAdminDetail(PluginUserConfig):
name: str = Field(..., description='插件名称')
tools: list[ToolAdminDetail] = Field(default_factory=list, description='... |
class PluginAdminDetail(PluginUserConfig):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 5 | 4 | 0 | 5 | 5 | 4 | 0 | 6 | 0 | 0 |
328,255 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.ReplacePluginsRequest | from pydantic import BaseModel, Field
from dingent.core.types import AssistantBase, AssistantCreate, AssistantUpdate, ConfigItemDetail, PluginUserConfig
class ReplacePluginsRequest(BaseModel):
plugins: list[PluginUserConfig] |
class ReplacePluginsRequest(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 5 | 0 | 0 |
328,256 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.SetActiveWorkflowRequest | from pydantic import BaseModel, Field
class SetActiveWorkflowRequest(BaseModel):
workflow_id: str |
class SetActiveWorkflowRequest(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 5 | 0 | 0 |
328,257 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.ToolAdminDetail | from pydantic import BaseModel, Field
class ToolAdminDetail(BaseModel):
name: str
description: str
enabled: bool |
class ToolAdminDetail(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 4 | 0 | 4 | 1 | 3 | 0 | 4 | 1 | 3 | 0 | 5 | 0 | 0 |
328,258 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/src/dingent/server/api/schemas.py | dingent.server.api.schemas.UpdatePluginConfigRequest | from pydantic import BaseModel, Field
from typing import Any
class UpdatePluginConfigRequest(BaseModel):
config: dict[str, Any] | None = None
enabled: bool | None = None
tools_default_enabled: bool | None = None
tools: list[str] | None = None |
class UpdatePluginConfigRequest(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 0 | 5 | 5 | 4 | 0 | 5 | 5 | 4 | 0 | 5 | 0 | 0 |
328,259 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/database.py | text2sql.database.DBManager | from loguru import logger
from pathlib import Path
from .settings import DatabaseSettings
class DBManager:
"""
A class to manage and maintain all database instances.
It creates and caches database connection instances on demand based on the configuration file.
"""
def __init__(self, db_configs: li... |
class DBManager:
'''
A class to manage and maintain all database instances.
It creates and caches database connection instances on demand based on the configuration file.
'''
def __init__(self, db_configs: list[DatabaseSettings]):
'''
Initializes the database manager with a list of... | 4 | 3 | 13 | 1 | 9 | 2 | 2 | 0.38 | 0 | 8 | 2 | 0 | 3 | 2 | 3 | 3 | 46 | 6 | 29 | 11 | 25 | 11 | 28 | 10 | 24 | 5 | 0 | 2 | 7 |
328,260 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/database.py | text2sql.database.Database | import pandas as pd
from sqlmodel import Session, SQLModel, create_engine, text
from loguru import logger
from sqlalchemy import inspect as table_inspect
from sqlalchemy.engine.url import make_url
class Database:
def __init__(self, uri: str, name: str, schemas_path: str | None=None, dialect: str | None=None, **kw... |
class Database:
def __init__(self, uri: str, name: str, schemas_path: str | None=None, dialect: str | None=None, **kwargs):
pass
@property
def tables(self) -> list[type[SQLModel]]:
pass
def run(self, query: str):
pass
def _get_tables(self, schemas_path) -> list[type[SQLMo... | 10 | 0 | 11 | 1 | 10 | 0 | 3 | 0.03 | 0 | 7 | 0 | 0 | 7 | 6 | 7 | 7 | 83 | 10 | 72 | 35 | 62 | 2 | 70 | 32 | 61 | 5 | 0 | 2 | 21 |
328,261 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/graph.py | text2sql.graph.Text2SqlAgent | from langchain_core.prompts import ChatPromptTemplate
from langgraph.graph import END, StateGraph
from langchain_community.utilities import SQLDatabase
from typing import Any, Literal, cast
from langchain_core.runnables import RunnableConfig
from langchain.chat_models.base import BaseChatModel
from .handlers.base impor... |
class Text2SqlAgent:
'''An agent that converts natural language to SQL queries and executes them.'''
def __init__(self, llm: BaseChatModel, db: Database, sql_result_handler: Handler, vectorstore=None):
pass
def _build_graph(self):
'''Builds the LangGraph agent.'''
pass
def _s... | 8 | 7 | 22 | 3 | 18 | 2 | 3 | 0.1 | 0 | 13 | 5 | 0 | 7 | 6 | 7 | 7 | 164 | 27 | 126 | 63 | 108 | 12 | 97 | 52 | 89 | 7 | 0 | 3 | 23 |
328,262 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/handlers/base.py | text2sql.handlers.base.DBRequest | from pydantic import BaseModel, Field
from typing import Any
class DBRequest(BaseModel):
"""A structured, validated request object for the handler chain."""
data: dict[str, Any] = Field(default_factory=dict)
metadata: dict[str, Any] = Field(default_factory=dict) |
class DBRequest(BaseModel):
'''A structured, validated request object for the handler chain.'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 5 | 1 | 3 | 3 | 2 | 1 | 3 | 3 | 2 | 0 | 5 | 0 | 0 |
328,263 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/handlers/base.py | text2sql.handlers.base.Handler | from abc import ABC, abstractmethod
class Handler(ABC):
"""
Abstract base handler with a helper for chain construction.
"""
def __init__(self, **kwargs):
self._next_handler: Handler | None = None
def set_next(self, handler: Handler) -> Handler:
self._next_handler = handler
... | null | 8 | 2 | 5 | 0 | 4 | 0 | 2 | 0.22 | 1 | 3 | 1 | 3 | 4 | 1 | 5 | 25 | 34 | 6 | 23 | 12 | 15 | 5 | 21 | 10 | 15 | 3 | 4 | 1 | 8 |
328,264 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/handlers/handler_builder.py | text2sql.handlers.handler_builder.ChainFactory | from ..database import Database
from . import result_handler
from .base import Handler
class ChainFactory:
def __init__(self):
pass
def build_result_chain(self, db: Database) -> Handler:
"""Builds the result processing chain for a given database."""
sql_run_handler = result_handler.Re... |
class ChainFactory:
def __init__(self):
pass
def build_result_chain(self, db: Database) -> Handler:
'''Builds the result processing chain for a given database.'''
pass | 3 | 1 | 10 | 2 | 7 | 1 | 1 | 0.07 | 0 | 5 | 5 | 0 | 2 | 0 | 2 | 2 | 21 | 5 | 15 | 9 | 10 | 1 | 9 | 7 | 6 | 1 | 0 | 0 | 2 |
328,265 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/handlers/result_handler.py | text2sql.handlers.result_handler.ContextBuilder | from .base import DBRequest, Handler
import pandas as pd
class ContextBuilder(Handler):
def __init__(self, db, max_length: int=5):
super().__init__()
self.max_length = max_length
self.summarizer = db.summarizer
async def ahandle(self, request: DBRequest):
result = request.data... |
class ContextBuilder(Handler):
def __init__(self, db, max_length: int=5):
pass
async def ahandle(self, request: DBRequest):
pass | 3 | 0 | 12 | 0 | 12 | 0 | 3 | 0 | 1 | 6 | 1 | 0 | 2 | 2 | 2 | 27 | 26 | 1 | 25 | 9 | 22 | 0 | 21 | 9 | 18 | 5 | 5 | 2 | 6 |
328,266 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/handlers/result_handler.py | text2sql.handlers.result_handler.ResultGetHandler | from .base import DBRequest, Handler
from ..database import Database
class ResultGetHandler(Handler):
def __init__(self, db):
super().__init__()
self.db: Database = db
async def ahandle(self, request):
query = request.data['query']
raw_result = self.db.run(query)
reque... |
class ResultGetHandler(Handler):
def __init__(self, db):
pass
async def ahandle(self, request):
pass | 3 | 0 | 6 | 1 | 5 | 0 | 1 | 0 | 1 | 2 | 1 | 0 | 2 | 1 | 2 | 27 | 14 | 3 | 11 | 6 | 8 | 0 | 11 | 6 | 8 | 1 | 5 | 0 | 2 |
328,267 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/handlers/result_handler.py | text2sql.handlers.result_handler.ResultStructureHandler | from .base import DBRequest, Handler
from ..types_ import Group
import pandas as pd
class ResultStructureHandler(Handler):
def __init__(self):
pass
async def ahandle(self, request: DBRequest):
source_df: pd.DataFrame = request.data['result']
grouping_schema: list[Group] | None = reque... |
class ResultStructureHandler(Handler):
def __init__(self):
pass
async def ahandle(self, request: DBRequest):
pass | 3 | 0 | 19 | 4 | 11 | 4 | 3 | 0.35 | 1 | 3 | 2 | 0 | 2 | 0 | 2 | 27 | 40 | 9 | 23 | 11 | 20 | 8 | 23 | 11 | 20 | 4 | 5 | 2 | 5 |
328,268 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/settings.py | text2sql.settings.DatabaseSettings | import os
from pydantic import BaseModel, model_validator
class DatabaseSettings(BaseModel):
name: str
uri: str = ''
uri_env: str = ''
schemas_file: str | None = None
type: str | None = None
@model_validator(mode='after')
def determine_type_from_uri(self) -> 'DatabaseSettings':
"""... |
class DatabaseSettings(BaseModel):
@model_validator(mode='after')
def determine_type_from_uri(self) -> 'DatabaseSettings':
'''
Runs after all fields are populated to ensure `uri` is available.
'''
pass | 3 | 1 | 23 | 3 | 17 | 3 | 7 | 0.17 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 83 | 32 | 4 | 24 | 8 | 21 | 4 | 20 | 7 | 18 | 7 | 5 | 2 | 7 |
328,269 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/settings.py | text2sql.settings.Settings | from pydantic_settings import BaseSettings, SettingsConfigDict
from typing import Any
class Settings(BaseSettings):
model_config = SettingsConfigDict(env_nested_delimiter='__')
database: DatabaseSettings
llm: dict[str, str | Any] |
class Settings(BaseSettings):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 1 | 6 | 2 | 5 | 0 | 4 | 2 | 3 | 0 | 1 | 0 | 0 |
328,270 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/tool.py | text2sql.tool.Text2SqlTool | from .graph import Text2SqlAgent
from typing import Annotated
from .database import Database
from .settings import Settings
from pydantic import Field
from langchain.chat_models import init_chat_model
from .handlers.handler_builder import ChainFactory
class Text2SqlTool:
"""A tool that uses the Text2SqlAgent to an... |
class Text2SqlTool:
'''A tool that uses the Text2SqlAgent to answer questions from a database.'''
def __init__(self, settings: Settings, **kwargs):
pass
async def tool_run(self, question: Annotated[str, Field(description="sub question of user's original question")]) -> dict:
'''Use the to... | 3 | 2 | 12 | 1 | 11 | 1 | 1 | 0.08 | 0 | 8 | 4 | 0 | 2 | 0 | 2 | 2 | 30 | 4 | 24 | 15 | 14 | 2 | 13 | 8 | 10 | 1 | 0 | 0 | 2 |
328,271 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/types_.py | text2sql.types_.Group | from pydantic import BaseModel, Field
class Group(BaseModel):
primary_entity_name: str
columns: list[str] |
class Group(BaseModel):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 3 | 0 | 3 | 1 | 2 | 0 | 3 | 1 | 2 | 0 | 5 | 0 | 0 |
328,272 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/types_.py | text2sql.types_.SQLQueryResultPresenter | from pydantic import BaseModel, Field
class SQLQueryResultPresenter(BaseModel):
"""
Generates an SQL query and structures its results into a few, intuitive groups for presentation.
"""
sql_query: str = Field(description="The SQL query that answers the user's question. All calculated or aggregated colum... |
class SQLQueryResultPresenter(BaseModel):
'''
Generates an SQL query and structures its results into a few, intuitive groups for presentation.
'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0.38 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 82 | 13 | 2 | 8 | 3 | 7 | 3 | 3 | 3 | 2 | 0 | 5 | 0 | 0 |
328,273 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/basic/{{ cookiecutter.project_slug }}/plugins/text2sql/types_.py | text2sql.types_.SQLState | from langgraph.graph.message import MessagesState
class SQLState(MessagesState):
"""
Represents the state of the SQL generation graph.
Attributes:
sql_result: A list to store the results of the SQL query.
"""
sql_result: list[dict]
result_grouping: list[Group] | None |
class SQLState(MessagesState):
'''
Represents the state of the SQL generation graph.
Attributes:
sql_result: A list to store the results of the SQL query.
'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1.67 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 2 | 3 | 1 | 2 | 5 | 3 | 1 | 2 | 0 | 1 | 0 | 0 |
328,274 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/plugins/{{ cookiecutter.project_slug }}/settings.py | {{ cookiecutter.project_slug }}.settings.Settings | from dingent.engine.plugins import ToolBaseSettings
class Settings(ToolBaseSettings):
greeterName: str |
class Settings(ToolBaseSettings):
pass | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 1 | 0 | 0 |
328,275 | saya-ashen/Dingent | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/saya-ashen_Dingent/templates/plugins/{{ cookiecutter.project_slug }}/tool.py | {{ cookiecutter.project_slug }}.tool.Greeter | from dingent.engine.plugins import BaseTool
from .settings import Settings
from typing import Annotated
from pydantic import Field
from dingent.engine.plugins.types import TablePayload, ToolOutput
class Greeter(BaseTool):
"""A tool that uses the Text2SqlAgent to answer questions from a database."""
def __init... |
class Greeter(BaseTool):
'''A tool that uses the Text2SqlAgent to answer questions from a database.'''
def __init__(self, config: Settings, **kwargs):
pass
async def tool_run(self, target: Annotated[str, Field(description='Say hello to this person.')]) -> dict:
'''Use the tool.'''
... | 3 | 2 | 8 | 0 | 8 | 1 | 1 | 0.13 | 1 | 5 | 1 | 0 | 2 | 0 | 2 | 2 | 20 | 2 | 16 | 11 | 6 | 2 | 7 | 4 | 4 | 1 | 1 | 0 | 2 |
328,276 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/benchmarks/benchmarks.py | benchmarks.benchmarks.DielectricPlanarBenchmark | from tests.data import DIPOLE_GRO, DIPOLE_ITP
import MDAnalysis as mda
from maicos import DielectricPlanar
class DielectricPlanarBenchmark:
"""Benchmark the DielectricPlanar class."""
def setup(self):
"""Setup the analysis objects."""
self.dipole1 = mda.Universe(DIPOLE_ITP, DIPOLE_GRO, topolog... |
class DielectricPlanarBenchmark:
'''Benchmark the DielectricPlanar class.'''
def setup(self):
'''Setup the analysis objects.'''
pass
def time_single_dielectric_planar(self):
'''Benchmark of a complete run over a single frame.'''
pass | 3 | 3 | 4 | 0 | 3 | 1 | 1 | 0.43 | 0 | 0 | 0 | 0 | 2 | 2 | 2 | 2 | 12 | 2 | 7 | 5 | 4 | 3 | 7 | 5 | 4 | 1 | 0 | 0 | 2 |
328,277 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/developer/check_changelog.py | check_changelog.ChangelogError | class ChangelogError(Exception):
"""Changelog error."""
pass | class ChangelogError(Exception):
'''Changelog error.'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0.5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 4 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 3 | 0 | 0 |
328,278 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/_version.py | maicos._version.VersioneerConfig | class VersioneerConfig:
"""Container for Versioneer configuration parameters."""
VCS: str
style: str
tag_prefix: str
parentdir_prefix: str
versionfile_source: str
verbose: bool | class VersioneerConfig:
'''Container for Versioneer configuration parameters.'''
pass | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0.14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 1 | 7 | 1 | 6 | 1 | 7 | 1 | 6 | 0 | 0 | 0 | 0 |
328,279 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/base.py | maicos.core.base.AnalysisBase | from datetime import datetime
import numpy as np
from MDAnalysis.analysis.base import Results
import numbers
from ..lib.math import center_cluster, new_mean, new_variance
from tqdm.contrib.logging import logging_redirect_tqdm
import MDAnalysis as mda
import MDAnalysis.analysis.base
from ..lib.util import atomgroup_head... | @render_docs
class AnalysisBase(_Runner, MDAnalysis.analysis.base.AnalysisBase):
'''Base class derived from MDAnalysis for defining multi-frame analysis.
The class is designed as a template for creating multi-frame analyses. This class
will automatically take care of setting up the trajectory reader for ite... | 16 | 11 | 28 | 3 | 21 | 5 | 4 | 0.9 | 2 | 14 | 0 | 24 | 11 | 20 | 11 | 12 | 498 | 71 | 231 | 69 | 197 | 207 | 127 | 46 | 115 | 12 | 1 | 3 | 42 |
328,280 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/base.py | maicos.core.base.AnalysisCollection | from ..lib.util import atomgroup_header, correlation_analysis, get_center, get_cli_input, get_module_input_str, maicos_banner, render_docs
import warnings
from typing_extensions import Self
class AnalysisCollection(_Runner):
"""Running a collection of analysis classes on the same single trajectory.
.. warning... |
class AnalysisCollection(_Runner):
'''Running a collection of analysis classes on the same single trajectory.
.. warning::
``AnalysisCollection`` is still experimental. You should not use it for anything
important.
An analyses with ``AnalysisCollection`` can lead to a speedup compared to ru... | 5 | 3 | 18 | 1 | 15 | 2 | 3 | 0.98 | 1 | 6 | 1 | 0 | 3 | 1 | 3 | 4 | 117 | 22 | 48 | 16 | 35 | 47 | 16 | 7 | 12 | 4 | 1 | 2 | 8 |
328,281 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/base.py | maicos.core.base.ProfileBase | import MDAnalysis as mda
from ..lib.util import atomgroup_header, correlation_analysis, get_center, get_cli_input, get_module_input_str, maicos_banner, render_docs
import numpy as np
from collections.abc import Callable
from MDAnalysis.analysis.base import Results
import logging
@render_docs
class ProfileBase:
"""... | @render_docs
class ProfileBase:
'''Base class for computing profiles.
Parameters
----------
${ATOMGROUP_PARAMETER}
${PROFILE_CLASS_PARAMETERS}
${PROFILE_CLASS_PARAMETERS_PRIVATE}
Attributes
----------
${PROFILE_CLASS_ATTRIBUTES}
'''
def __init__(self, atomgroup: mda.AtomGrou... | 9 | 3 | 19 | 3 | 14 | 4 | 2 | 0.4 | 0 | 8 | 1 | 3 | 6 | 9 | 6 | 6 | 136 | 24 | 85 | 34 | 66 | 34 | 48 | 22 | 41 | 4 | 0 | 2 | 13 |
328,282 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/base.py | maicos.core.base._Runner | from mdacli.logger import setup_logging
from MDAnalysis.lib.log import ProgressBar
from ..lib.util import atomgroup_header, correlation_analysis, get_center, get_cli_input, get_module_input_str, maicos_banner, render_docs
from typing_extensions import Self
from tempfile import NamedTemporaryFile
import logging
class _... |
class _Runner:
'''Private Runner class that provides a common ``run`` method.
Class is used inside ``AnalysisBase`` as well as in ``AnalysisCollection``
'''
def _run(self, analysis_instances: tuple['AnalysisBase', ...], start: int | None=None, stop: int | None=None, step: int | None=None, frames: int ... | 2 | 1 | 63 | 12 | 50 | 3 | 9 | 0.12 | 0 | 6 | 0 | 2 | 1 | 1 | 1 | 1 | 69 | 14 | 51 | 17 | 40 | 6 | 26 | 8 | 24 | 9 | 0 | 2 | 9 |
328,283 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/cylinder.py | maicos.core.cylinder.CylinderBase | import numpy as np
from .planar import PlanarBase
import logging
from ..lib.util import render_docs
import MDAnalysis as mda
from ..lib.math import transform_cylinder
@render_docs
class CylinderBase(PlanarBase):
"""Analysis class providing options and attributes for a cylinder system.
Provide the results attr... | @render_docs
class CylinderBase(PlanarBase):
'''Analysis class providing options and attributes for a cylinder system.
Provide the results attribute `r`.
Parameters
----------
${ATOMGROUP_PARAMETER}
${CYLINDER_CLASS_PARAMETERS}
${WRAP_COMPOUND_PARAMETER}
Attributes
----------
${C... | 7 | 5 | 17 | 1 | 14 | 1 | 2 | 0.47 | 1 | 6 | 0 | 6 | 5 | 6 | 5 | 23 | 122 | 16 | 72 | 29 | 51 | 34 | 36 | 13 | 30 | 3 | 3 | 1 | 9 |
328,284 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/cylinder.py | maicos.core.cylinder.ProfileCylinderBase | import numpy as np
from .base import ProfileBase
import logging
import MDAnalysis as mda
from ..lib.util import render_docs
from ..lib.math import transform_cylinder
from collections.abc import Callable
@render_docs
class ProfileCylinderBase(CylinderBase, ProfileBase):
"""Base class for computing radial profiles i... | @render_docs
class ProfileCylinderBase(CylinderBase, ProfileBase):
'''Base class for computing radial profiles in a cylindrical geometry.
${CORRELATION_INFO_RADIAL}
Parameters
----------
${PROFILE_CYLINDER_CLASS_PARAMETERS}
${PROFILE_CLASS_PARAMETERS_PRIVATE}
Attributes
----------
${... | 7 | 1 | 16 | 1 | 15 | 1 | 1 | 0.22 | 2 | 6 | 0 | 6 | 5 | 6 | 5 | 34 | 101 | 12 | 74 | 32 | 46 | 16 | 19 | 7 | 13 | 1 | 4 | 0 | 5 |
328,285 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/planar.py | maicos.core.planar.PlanarBase | from ..lib.util import render_docs
import MDAnalysis as mda
from .base import AnalysisBase, ProfileBase
import numpy as np
@render_docs
class PlanarBase(AnalysisBase):
"""Analysis class providing options and attributes for a planar system.
Parameters
----------
${ATOMGROUP_PARAMETER}
${PLANAR_CLAS... | @render_docs
class PlanarBase(AnalysisBase):
'''Analysis class providing options and attributes for a planar system.
Parameters
----------
${ATOMGROUP_PARAMETER}
${PLANAR_CLASS_PARAMETERS}
${WRAP_COMPOUND_PARAMETER}
Attributes
----------
${PLANAR_CLASS_ATTRIBUTES}
zmin : float
... | 9 | 6 | 14 | 1 | 11 | 2 | 2 | 0.67 | 1 | 6 | 0 | 7 | 6 | 7 | 6 | 18 | 127 | 15 | 67 | 29 | 46 | 45 | 37 | 15 | 30 | 3 | 2 | 1 | 10 |
328,286 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/planar.py | maicos.core.planar.ProfilePlanarBase | import logging
from ..lib.math import symmetrize
from collections.abc import Callable
import MDAnalysis as mda
from ..lib.util import render_docs
from .base import AnalysisBase, ProfileBase
import numpy as np
@render_docs
class ProfilePlanarBase(PlanarBase, ProfileBase):
"""Base class for computing profiles in a c... | @render_docs
class ProfilePlanarBase(PlanarBase, ProfileBase):
'''Base class for computing profiles in a cartesian geometry.
${CORRELATION_INFO_RADIAL}
Parameters
----------
${PROFILE_PLANAR_CLASS_PARAMETERS}
${PROFILE_CLASS_PARAMETERS_PRIVATE}
Attributes
----------
${PROFILE_PLANAR_... | 7 | 1 | 18 | 2 | 15 | 1 | 2 | 0.21 | 2 | 7 | 0 | 8 | 5 | 6 | 5 | 29 | 108 | 18 | 75 | 33 | 47 | 16 | 29 | 9 | 23 | 3 | 3 | 2 | 8 |
328,287 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/sphere.py | maicos.core.sphere.ProfileSphereBase | import MDAnalysis as mda
import numpy as np
import logging
from collections.abc import Callable
from .base import ProfileBase
from ..lib.math import transform_sphere
from ..lib.util import render_docs
@render_docs
class ProfileSphereBase(SphereBase, ProfileBase):
"""Base class for computing radial profiles in a sp... | @render_docs
class ProfileSphereBase(SphereBase, ProfileBase):
'''Base class for computing radial profiles in a spherical geometry.
${CORRELATION_INFO_RADIAL}
Parameters
----------
${PROFILE_SPHERE_CLASS_PARAMETERS}
${PROFILE_CLASS_PARAMETERS_PRIVATE}
Attributes
----------
${PROFILE_... | 7 | 1 | 14 | 1 | 13 | 1 | 1 | 0.22 | 2 | 6 | 0 | 4 | 5 | 4 | 5 | 28 | 89 | 12 | 64 | 28 | 39 | 14 | 19 | 7 | 13 | 1 | 3 | 0 | 5 |
328,288 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/core/sphere.py | maicos.core.sphere.SphereBase | from ..lib.util import render_docs
import logging
import numpy as np
from .planar import AnalysisBase
import MDAnalysis as mda
from ..lib.math import transform_sphere
@render_docs
class SphereBase(AnalysisBase):
"""Analysis class providing options and attributes for a spherical system.
Provide the results att... | @render_docs
class SphereBase(AnalysisBase):
'''Analysis class providing options and attributes for a spherical system.
Provide the results attribute `r`.
Parameters
----------
${ATOMGROUP_PARAMETER}
${SPHERE_CLASS_PARAMETERS}
${WRAP_COMPOUND_PARAMETER}
Attributes
----------
${SP... | 7 | 5 | 15 | 1 | 13 | 1 | 2 | 0.55 | 1 | 6 | 0 | 4 | 5 | 6 | 5 | 17 | 114 | 15 | 64 | 26 | 46 | 35 | 35 | 14 | 29 | 3 | 2 | 1 | 9 |
328,289 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/lib/tables.py | maicos.lib.tables.CMParameter | import numpy as np
from dataclasses import dataclass
@dataclass
class CMParameter:
"""Cromer-Mann X-ray scattering factor parameters."""
a: np.ndarray
b: np.ndarray
c: float | @dataclass
class CMParameter:
'''Cromer-Mann X-ray scattering factor parameters.'''
pass | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0.25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 1 | 4 | 1 | 3 | 1 | 4 | 1 | 3 | 0 | 0 | 0 | 0 |
328,290 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/lib/util.py | maicos.lib.util.Unit_vector | from typing import Protocol
import MDAnalysis as mda
import numpy as np
class Unit_vector(Protocol):
"""Protocol class for unit vector methods type hints."""
def __call__(self, atomgroup: mda.AtomGroup, grouping: str) -> np.ndarray:
"""Call for type hints."""
... |
class Unit_vector(Protocol):
'''Protocol class for unit vector methods type hints.'''
def __call__(self, atomgroup: mda.AtomGroup, grouping: str) -> np.ndarray:
'''Call for type hints.'''
pass | 2 | 2 | 3 | 0 | 2 | 1 | 1 | 0.67 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 25 | 6 | 1 | 3 | 2 | 1 | 2 | 3 | 2 | 1 | 1 | 5 | 0 | 1 |
328,291 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DensityCylinder.py | maicos.modules.DensityCylinder.DensityCylinder | from ..lib.weights import density_weights
import MDAnalysis as mda
import logging
from ..core import ProfileCylinderBase
from ..lib.util import render_docs
@render_docs
class DensityCylinder(ProfileCylinderBase):
"""Cylindrical partial density profiles.
${DENSITY_CYLINDER_DESCRIPTION}
${CORRELATION_INFO_... | @render_docs
class DensityCylinder(ProfileCylinderBase):
'''Cylindrical partial density profiles.
${DENSITY_CYLINDER_DESCRIPTION}
${CORRELATION_INFO_RADIAL}
Parameters
----------
${ATOMGROUP_PARAMETER}
${DENS_PARAMETER}
${PROFILE_CYLINDER_CLASS_PARAMETERS}
${OUTPUT_PARAMETER}
Att... | 4 | 1 | 22 | 0 | 22 | 0 | 1 | 0.3 | 1 | 5 | 0 | 0 | 2 | 1 | 2 | 36 | 64 | 7 | 44 | 22 | 23 | 13 | 7 | 4 | 4 | 1 | 5 | 0 | 2 |
328,292 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DensityPlanar.py | maicos.modules.DensityPlanar.DensityPlanar | from ..lib.util import render_docs
import MDAnalysis as mda
import logging
from ..lib.weights import density_weights
from ..core import ProfilePlanarBase
@render_docs
class DensityPlanar(ProfilePlanarBase):
"""Cartesian partial density profiles.
${DENSITY_PLANAR_DESCRIPTION}
${CORRELATION_INFO_PLANAR}
... | @render_docs
class DensityPlanar(ProfilePlanarBase):
'''Cartesian partial density profiles.
${DENSITY_PLANAR_DESCRIPTION}
${CORRELATION_INFO_PLANAR}
Parameters
----------
${ATOMGROUP_PARAMETER}
${DENS_PARAMETER}
${PROFILE_PLANAR_CLASS_PARAMETERS}
${OUTPUT_PARAMETER}
Attributes
... | 4 | 1 | 21 | 0 | 21 | 0 | 1 | 0.42 | 1 | 5 | 0 | 0 | 2 | 1 | 2 | 31 | 69 | 8 | 43 | 21 | 23 | 18 | 7 | 4 | 4 | 1 | 4 | 0 | 2 |
328,293 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DensitySphere.py | maicos.modules.DensitySphere.DensitySphere | import MDAnalysis as mda
from ..core import ProfileSphereBase
from ..lib.util import render_docs
import logging
from ..lib.weights import density_weights
@render_docs
class DensitySphere(ProfileSphereBase):
"""Spherical partial density profiles.
${DENSITY_SPHERE_DESCRIPTION}
${CORRELATION_INFO_RADIAL}
... | @render_docs
class DensitySphere(ProfileSphereBase):
'''Spherical partial density profiles.
${DENSITY_SPHERE_DESCRIPTION}
${CORRELATION_INFO_RADIAL}
Parameters
----------
${ATOMGROUP_PARAMETER}
${DENS_PARAMETER}
${PROFILE_SPHERE_CLASS_PARAMETERS}
${OUTPUT_PARAMETER}
Attributes
... | 4 | 1 | 19 | 0 | 19 | 0 | 1 | 0.34 | 1 | 5 | 0 | 0 | 2 | 1 | 2 | 30 | 58 | 7 | 38 | 19 | 20 | 13 | 7 | 4 | 4 | 1 | 4 | 0 | 2 |
328,294 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DielectricCylinder.py | maicos.modules.DielectricCylinder.DielectricCylinder | import numpy as np
import scipy.constants
import logging
from ..core import CylinderBase
import MDAnalysis as mda
from ..lib.util import charge_neutral, citation_reminder, get_compound, render_docs
@render_docs
@charge_neutral(filter='error')
class DielectricCylinder(CylinderBase):
"""Cylindrical dielectric profil... | @render_docs
@charge_neutral(filter='error')
class DielectricCylinder(CylinderBase):
'''Cylindrical dielectric profiles.
Computes the axial :math:`\varepsilon_z(r)` and inverse radial
:math:`\varepsilon_r^{-1}(r)` components of the cylindrical dielectric tensor
:math:`\varepsilon`. The components are bi... | 9 | 2 | 39 | 5 | 29 | 5 | 1 | 0.45 | 1 | 5 | 0 | 0 | 5 | 8 | 5 | 28 | 248 | 38 | 145 | 52 | 120 | 65 | 66 | 33 | 60 | 2 | 4 | 1 | 7 |
328,295 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DielectricPlanar.py | maicos.modules.DielectricPlanar.DielectricPlanar | from ..core import PlanarBase
from ..lib.math import symmetrize
import logging
import numpy as np
from ..lib.util import charge_neutral, citation_reminder, get_compound, render_docs
import scipy.constants
import MDAnalysis as mda
@render_docs
@charge_neutral(filter='error')
class DielectricPlanar(PlanarBase):
"""P... | @render_docs
@charge_neutral(filter='error')
class DielectricPlanar(PlanarBase):
'''Planar dielectric profiles.
Computes the parallel :math:`\varepsilon_\parallel(z)` and inverse perpendicular
(:math:`\varepsilon_\perp^{-1}(r)`) components of the planar dielectric tensor
:math:`\varepsilon`. The compone... | 9 | 2 | 56 | 9 | 43 | 5 | 2 | 0.37 | 1 | 6 | 0 | 0 | 5 | 10 | 5 | 23 | 350 | 56 | 215 | 61 | 191 | 79 | 116 | 43 | 110 | 3 | 3 | 1 | 9 |
328,296 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DielectricSpectrum.py | maicos.modules.DielectricSpectrum.DielectricSpectrum | from ..lib.util import bin, charge_neutral, citation_reminder, get_compound, render_docs
import MDAnalysis as mda
import numpy as np
import scipy.constants
import logging
from ..core import AnalysisBase
from ..lib.math import FT, iFT
from pathlib import Path
@render_docs
@charge_neutral(filter='error')
class Dielectri... | @render_docs
@charge_neutral(filter='error')
class DielectricSpectrum(AnalysisBase):
'''Linear dielectric spectrum.
This module, given a molecular dynamics trajectory, produces a `.txt` file
containing the complex dielectric function as a function of the (linear, not radial
- i.e., :math:`\nu` or :math:... | 9 | 2 | 43 | 6 | 33 | 4 | 3 | 0.35 | 1 | 8 | 0 | 0 | 5 | 14 | 5 | 17 | 266 | 40 | 167 | 47 | 145 | 59 | 87 | 29 | 81 | 7 | 2 | 2 | 13 |
328,297 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DielectricSphere.py | maicos.modules.DielectricSphere.DielectricSphere | from ..lib.util import charge_neutral, citation_reminder, get_compound, render_docs
import MDAnalysis as mda
from ..core import SphereBase
import logging
import scipy.constants
import numpy as np
@render_docs
@charge_neutral(filter='error')
class DielectricSphere(SphereBase):
"""Spherical dielectric profiles.
... | @render_docs
@charge_neutral(filter='error')
class DielectricSphere(SphereBase):
'''Spherical dielectric profiles.
Computes the inverse radial :math:`\varepsilon_r^{-1}(r)` component of the
spherical dielectric tensor :math:`\varepsilon`. The center of the sphere is either
located at the center of the s... | 9 | 2 | 23 | 3 | 18 | 3 | 1 | 0.43 | 1 | 5 | 0 | 0 | 5 | 7 | 5 | 22 | 157 | 28 | 90 | 35 | 70 | 39 | 39 | 21 | 33 | 2 | 3 | 1 | 6 |
328,298 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DipoleAngle.py | maicos.modules.DipoleAngle.DipoleAngle | from ..lib.util import get_compound, render_docs, unit_vectors_planar
from ..lib.weights import diporder_weights
import logging
import MDAnalysis as mda
import numpy as np
from ..core import AnalysisBase
@render_docs
class DipoleAngle(AnalysisBase):
"""Angle timeseries of dipole moments with respect to an axis.
... | @render_docs
class DipoleAngle(AnalysisBase):
'''Angle timeseries of dipole moments with respect to an axis.
The analysis can be applied to study the orientational dynamics of water molecules
during an excitation pulse. For more details read
:footcite:t:`elgabartyEnergyTransferHydrogen2020`.
Paramet... | 9 | 2 | 13 | 1 | 12 | 0 | 1 | 0.33 | 1 | 5 | 0 | 0 | 5 | 11 | 5 | 17 | 106 | 13 | 70 | 33 | 51 | 23 | 32 | 20 | 25 | 1 | 2 | 0 | 6 |
328,299 | maicos-devel/maicos | /Users/umroot/Documents/PhD_works/PhD-Core-Contents/Class-level-dataset-curation/unseen_data/git_repos_for_analysis/maicos-devel_maicos/src/maicos/modules/DiporderCylinder.py | maicos.modules.DiporderCylinder.DiporderCylinder | from ..lib.weights import diporder_weights
import MDAnalysis as mda
from ..core import ProfileCylinderBase
import logging
from ..lib.util import render_docs, unit_vectors_cylinder
@render_docs
class DiporderCylinder(ProfileCylinderBase):
"""Cylindrical dipolar order parameters.
${DIPORDER_DESCRIPTION}
${... | @render_docs
class DiporderCylinder(ProfileCylinderBase):
'''Cylindrical dipolar order parameters.
${DIPORDER_DESCRIPTION}
${CORRELATION_INFO_RADIAL}
Parameters
----------
${ATOMGROUP_PARAMETER}
${ORDER_PARAMETER_PARAMETER}
${PDIM_RADIAL_PARAMETER}
${PROFILE_CYLINDER_CLASS_PARAMETERS... | 5 | 1 | 22 | 1 | 21 | 0 | 1 | 0.25 | 1 | 5 | 0 | 0 | 2 | 0 | 2 | 36 | 79 | 9 | 56 | 24 | 33 | 14 | 9 | 5 | 5 | 2 | 5 | 0 | 4 |
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