Datasets:

multimolecule
/

bprna-spot-1

id string	sequence string	secondary_structure string	structural_annotation string	functional_annotation string
2a64-1-A	GUUAAUCAUGCUCGGGUAAUCGCUGCGGCCGGUUUCGGCCGUAGAGGAAAGUCCAUGCUCGCACGGUGCUGAGAUGCCCGUAGUGUUCGUGCCUAGCGAAUCCAUAAGCUAGGGCAGCCGGCUGACGGCGGGCCCUGAAAGUGCCGGUAAACCCCACGAGCGAGAAACCCAAAUAGGGGCACCUUCCCGAAGGAAAUGAACGGAGGGAAGGACAGGCGGCGCAUGCAGCCUGUAGAUAGAUGAUUACCGCCGGAGUACGUACGAAGGUACAGAACAUGGCUUAUAGAGCAUGAUUAAC	..(((((((((((((((((((.(((((((((....))))))))).[[{{<<.<<<<<(((((((((.((([{[)])))))).....((((((((((((..(.)...)))))))(((((())))).)([[((()))[..)]((](())...))].))))))))))..((((.(..)))))(.((((((((.(((.].}..))).))))))))(((((((.....().)))))))[<.)..]<)))))))(((((.(((()))).)))))]]}.>>>>>>>>>}.).)))))))))))..	EESSSSSSSSSSSSMMMMMMMMSSSSSSSSSHHHHSSSSSSSSSMMMSBSSBSSSSSSSSSSSSSSBSSBBBSHSSSSSSSMMMMMSSSSSSSSSSSSIISHSIIISSSSSSSSSSSSSSSSSSBSMSMSSSSSSSHHHSSSISSSSIIISSSMSSSSSSSSSSMMSSSSBSHHSSSSSMMSSSSSSSSISSSHHHHHHSSSISSSSSSSSSSSSSSSIIIIISSISSSSSSSSHHHHHSSIIIIIIISSSSSISSSSSSSSISSSSSIIIISMSSSSSSSSMSBSSSSSSSSSSSEE	NNNNNNNNNNNNNNKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNKKNKNNNNNNNNNNNNNNNNNNNNKKKNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNKNNNNNNNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNKNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNKNNNNKKKKKKKNNNNNNNNNNNNNNNNNNNNKKKNNKNNNNNNNNNNNNNNNNNNNNNNNN
3adb-1-C	GGCCGCCGCCACCGGGGUGGUCCCCGGGCCGGACUUCAGAUCCGGCGCGCCCCGAGUGGGGCGCGGGGUUCAAUUCCCCGCGGCGGCCGCCA	(((((((((..(((((([[()))))))(((((((.....)))))))(((((((....)))))))(((((]..)].)))))))))))))....	SSSSSSSSSMMSSSSSSBBSSSSSSSSSSSSSSSHHHHHSSSSSSSSSSSSSSHHHHSSSSSSSSSSSSHHHSBBSSSSSSSSSSSSSEEEE	NNNNNNNNNNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNKNNNNNNNNNNNNNNNNNN
3amt-1-B	GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCACCA	(((((((([{{.[)(...<A...]]}}(((((.........)))))...)(((((.>a....))))))))))))....	SSSSSSSMMSSISHHHHHHHHHHSISSSSSSSHHHHHHHHHSSSSSMMMMSSSSSHHHHHHHSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKNNNKKNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN
5bjo-1-E	GGCGCGAGGAAGGAGGUCUGAGGAGGUCACUGCGCC	(((((..()..([.)]((.))([.)].....)))))	SSSSSMMSSMMMSHHSSSHSSMSHHSMMMMMSSSSS	NNNNNNNNNNNKNNKNNNNNNKNNKNNNNNNNNNNN
5btp-1-B	GUUAUAUGACUGACGGAACGUGGAAUUAACCACAUGAAGUAUAAAUGCCGACCGUCUGGGCG	.((((((((((([[[[...[[[[.....)]]]].))))))))))..((((.]]]]..)))).	ESSSSSSSSSSIIIIIIIISSSSHHHHHHSSSSISSSSSSSSSSXXSSSSHHHHHHHSSSSE	NNNNNNNNNNNKKKKKNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNKKKKNNNNNNN
3bwp-1-A	GUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAGGCUAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAGUUGGUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCAGGGGAAGGACGGAACAAGUAUGGCGUUCGCGCCUAAGCU...	(([{{{{{[{.{{{{{{{{{{{.((((((<..)..)))))(((((((<AAAAAAA.))))))).{{{{{{{{{{{(((((.(((((((.B)))))))))))).C)]}(}}}}}}}}}}}((((((((((((..........D(((((..(...[[[[[[[[[[[[[.)......]]]]]].]]]]>aaaaaaa.]]]..))))))))))...)))))))>..}}}}}}}}}}})])}}}}}((((((b((..)).)))))).(((((.(((.(....(((.)))..).))).)))((((((.(((((..))))))())))...	EEESSSSSISBSSSSSSSSSSSMSSSSSSHHHSBBSSSSSSSSSSSSHHHHHHHHHSSSSSSSMSSSSSSSSSSSSSSSSBSSSSSSSHHSSSSSSSSSSSSBBBBSBSSSSSSSSSSSSSSSSSSSSSSSBBBBBBBBBBBSSSSSIIIIIISSSSSSSSSSSSSHHHHHHHHSSSSSSBSSSSBBBBBBBBBSSSIISSSSSSSSSSBBBSSSSSSSMMMSSSSSSSSSSSIIISSSSSSSSSSSISSHHSSISSSSSSXXXSSSISSSISIIIISSSHSSSIISISSSISSSSSSSSSBSSSSSHHSSSSSSSSSSS...	KKKNNNNNKNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNKKKNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNKNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNKKKNNNNNNNNNNNKNNNNNNNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...
6c63-1-A	GCGUACGAAGGAGAGGAGAGGAAGAGGAGAGUACGC	(((((((..([.{)(].}.)(..[..).])))))))	SSSSSSSMMSHHHSSHHHHSMMMSHHHHSSSSSSSS	NNNNNNNNNNKNKNNKNKNNKNNNNNKNNNNNNNNN
1c0a-1-B	GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGGUCGCGGGNNCGAGUCCCGNCCGUUCCGCCA	(((((((([{{.[)(..<()..]]}}(((((((.....)))))))...)((((((>..)..))))))))))))....	SSSSSSSMMSSISIIIIISSIISISSSSSSSSSHHHHHSSSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKNNKNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKNNNNNNNNNNNNNNNNNNNNN
6cf2-1-G	GGCUGGACUCGUACUUCGGUACUGGAGAAACAGCC	(((((((((((((((..)))))..)))).))))))	SSSSSSSSSSSSSSSHHSSSSSBBSSSSBSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4c7o-1-E	UGUUGGUUCUCCCGCAACGCGGAAGCGUGUGCCGGGAUGUAGCUGGCA	(((((((((((((((((((((..))))).))).)))).).))))))))	SSSSSSSSSSSSSSSSSSSSSHHSSSSSBSSSBSSSSBSBSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
2csx-1-C	GGCGGCGUAGCUCAGCUGGUCAGAGCGGGGAUCUCAUAAGUCCCAGGUCGGAGGUUCGAGUCCUCCCGCCGCCAC	(((((((([{{.[)(..<A...]]}}.(((((.(....))))))....)((((((>a.)..))))))))))))..	SSSSSSSMMSSISHHHHHHHHHSISSMSSSSSBSHHHHSSSSSSMMMMMSSSSSSHHHSBBSSSSSSSSSSSSEE	NNNNNNNKKNNNNKKNNKKNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNN
6cu1-1-A	GGGUGGCUCACAUUUGUUGCGGGUUCGAGACCCGUCAGAGCGAAAGCUCUGUAGCUCAAUGGUAGAGCGGUGUAGUCACC	.(((((((.(((((.(.((((((([{.)..)))))(((((((..)))))))(<AA..)).]}..)>aa))))))))))))	ESSSSSSSBSSSSSISISSSSSSSHHHSBBSSSSSSSSSSSSHHSSSSSSSSHHHHHSSIIIIISIIISSSSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNNNNNKKKNNNNNKKNNNKKKNNNNNNNNNNNN
3cw5-1-A	CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGNNCAAAUCCGGCCCCCGCAACCA	.(((((((.[[[[)(...{<..]]]](((([[[....)]]].)))...)((((((}>.)..))))))))))).....	ESSSSSSMMSSSSHHHHHHHHHSSSSSSSISSSHHHHHSSSISSSMMMMSSSSSSHHHSBBSSSSSSSSSSSEEEEE	NNNNNNNKNNNNNKKNNNKKNNNNNNNNNKNNNNNNNKNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN
6d12-1-C	GGGCUGCAUGUGGCAGCUCGGGCUGCAUGUGGCAGCUC	(((((((.....)))))))(((((((.....)))))))	SSSSSSSHHHHHSSSSSSSSSSSSSSHHHHHSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1ddy-1-A	GGAACCGGUGCGCAUAACCACCUCAGUGCGAGCAA	......(((([{{{{..)[)))...]].}.}}}..	EEEEEEEEEEESSSSIIISHHHHHHSIISBSSSEE	NNNNNNKKKKKNNNNNNKNKKKNNNNKNNNNNNNN
5de5-1-A	GCUGCGGUGUGGAAGGAGUGGCUGGGUUGCGCAGC	(((((([[).([..)]](.([..)])...])))))	SSSSSBSSBBBSHHHSSSBBSHHHSSMMMSSSSSS	NNNNNKNNKNKNNNKNNNNKNNNKNNNNNNNNNNN
2d6f-1-F	AGUCCCGUGGGGUAGUGGUAAUCCUGCUGGGCUUUGGACCCGGCGACAGCGGUUCGACUCCGCUCGGGACUACC	(((((((([{{.[)(<<A.<)]]}}((((((((...))))))))..>((((((>a.)>.))))))))))))...	SSSSSSSMMSSISBSHHHHHSSISSSSSSSSSSHHHSSSSSSSSMMMSSSSSSHHHSBBSSSSSSSSSSSSEEE	NNNNNNNKKNNNNKNKKKNKNNKNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNKNNNNNNNNNNNNNNNN
1dk1-1-B	GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC	((((.((((..))))(.(((((((((((.((((..))))))))))).))))).))))	SSSSMSSSSHHSSSSSBSSSSSSSSSSSBSSSSHHSSSSSSSSSSSBSSSSSMSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
2dlc-1-Y	CUCUCGGUAGCCAAGGGAAGGCGCAAGGNAAANCUUGAGUCGGGCGNNCGACUCGCCCCCGGGAGACCA	((((((((.[[[[)({<.]]]](((..........)))..)((((((}>.)..))))))))))))....	SSSSSSSMMSSSSHHHHHSSSSSSSHHHHHHHHHHSSSMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKNNNNNKKKKNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN
6d3p-1-A	GGGCGUAACCUCCAUCCGAGUUGCAAGAGAGGGAAACGCAGUCUC	..((((([[[[[[.......{[)..]]}]]]]]..))))......	EESSSSISSSSSBBBBBBBBSSHHHSBSSSSSSIISSSSEEEEEE	NNNNNNKNNNNNKNNNNNNNNNKNNNKNNNNNNNNNNNNNNNNNN
2dr2-1-B	GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCGAAUCACGUCGGGGUCACCA	(((((((.([[)((.....))].]((((((((..).)))))))....((((((...)..))))))))))))....	SSSSSSSMMSSBSSHHHHHSSSBSSSSSSSSSHHSBSSSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNNKNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
6dtd-1-C	UGUUGCAUCUGCCUUCUUUUUGAAAGGUAAAAACAAC	.(((((((.(((((((.....).)))))).)))))))	ESSSSSSSISSSSSSSHHHHHSBSSSSSSISSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
2du3-1-D	GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC	((((((((([[)[)({{<..].]](.((((.......)))))....).(((((}>.)}.))))).))))))	SSSSSSSMMSSISHHHHHHHSISSSBSSSSHHHHHHHSSSSSMMMMMMSSSSSHHHSBBSSSSSBSSSSSS	NNNNNNNKKNNKNKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNKNNNNNNNNNNNNN
1dul-1-B	GGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGCC	((((((((((....((((.((((((..))))))).))).))))))))))	SSSSSSSSSSIIIISSSSBSSSSSSHHSSSSSSSBSSSISSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3d2v-1-A	GGGACCAGGGGUGCUUGUUCACAGGCUGAGAAAGUCCCUUUGAACCUGAACAGGGUAAUGCCUGCGCAGGGAGUGUCN	..((((((((([(((((.(.))))))[..)].]..))))..(([[[.((.((((......)))))).)]]])).))).	EESSSSSSSSISSSSSSBSHSSSSSSSHHHSMSIISSSSMMSBSSSISSBSSSSHHHHHHSSSSSSIISSSSSBSSSE	NNNNNNNNNNKNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNN
3e5c-1-A	GUUCCCGAAAGGAUGGCGGAAACGCCAGAUGCCUUGUAACCGAAAGGGGGAAUA	(((((([(([[[(((((((..)))))))..)]]].)...(((..)))))))))]	SSSSSSMSISSSSSSSSSSHHSSSSSSSBBBSSSISMMMSSSHHSSSSSSSSSE	NNNNNNKNKNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNK
5e7k-1-3K	GGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUGGUCGCAGGUUCGAAUCCUGCACGACCCACCA	((((((((([)[[)...{..(]].].((((((.....))))))....))(((.}(..)...))).).)))))....	SSSSSSSMSHSSSHHHHHHHHSSMMMSSSSSSHHHHHSSSSSSMMMMMSSSSIISHHSIIISSSMSBSSSSSEEEE	NNNNNNNKNKNNNKNNNKNNKNNNKNNNNNNNNNNNNNNNNNNNNNNKNNNNNKNNNNNNNNNNNNNNNNNNNNNN
5e6m-1-C	GCGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCGCACCA	(((((((([{{.[)(<<A..]]}}(((((((.....)))))))..)((((((>a.)>.))))))))))))....	SSSSSSSMMSSISHHHHHHHSISSSSSSSSSHHHHHSSSSSSSMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKKKKNNNKNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNKNNNNNNNNNNNNNNNNN
1ffk-1-9	UUAGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCAGCGUUCCGGGGAGUACUGGAGUGCGCGAGCCUCUGGGAAACCCGGUUCGCCGCCACC	..([[[[[[([.)[[[[[[[)(...)(((((((.)(([[...)]].)))))..))....]]]]].]]](((((((((()(((((((.(((..)))))))))).))))))))).]]]]]]...	EEESSSSSSSHHSSSSSSSSMSHHHSSSSSSSSHSSISSHHHHSSISSSSSBBSSMMMMSSSSSBSSMSSSSSSSSSSSSSSSSSSBSSSHHSSSSSSSSSSMSSSSSSSSSMSSSSSSEEE	NNKNNNNNNNKNNNNNNNNNKNNNNNNNNNNNNNNNKNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1ffy-1-T	GGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCCAC	(((((((([{{.[)(..<A...]]}}((((((((..).)))))))...)((((((>a.)..))))))))))))..	SSSSSSSMMSSISHHHHHHHHHSISSSSSSSSSSHHSBSSSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEE	NNNNNNNKKNNNNKKNNKKNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNN
4fnj-1-A	CUGCUGGCUAAGGCAUGAAAGUGCUAUGCCUGCUG	(((((((((()((((((..))))))).))))))))	SSSSSSSSSSSSSSSSSHHSSSSSSSBSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1gax-1-C	GGGCGGCUAGCUCAGCGGAAGAGCGCUCGCCUCACACGCGAGAGGUCGUAGGUUCAAGUCCUACGCCGCCCACCA	(((((((([{{.[)(.<A..]]}}((((([.).....].))))...)((((((>a.)..))))))))))))....	SSSSSSSMMSSISHHHHHHHSISSSSSSSHHSBBBBBBBSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKNKKNNNKNNNNNNNKNNNNNNNKNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN
3gca-1-A	CUGGGUCGCAGUAACCCCAGUUAACAAAACAAGG	((((([({<<)...A))))).......]..}>>a	SSSSSISHHHSIIIISSSSSEEEEEEEEEEEEEE	NNNNNKNKKKNNNNKNNNNNNNNNNNNKNNKKKK
4gcw-1-B	GCUUCCAUAGCUCAGCAGGUAGAGCAGUCAGCGGUUCGAGCCCGCUUGGAAGCUU	((((((((..[..)({.{().(.]..).)((((((}..)}.))))))))))))..	SSSSSSSSHHHHHSSMMMSSMSHHHHSMSSSSSSSHHHSBBSSSSSSSSSSSSEE	NNNNNNNNNNKNNNNKNKNNNNNKNNNNNNNNNNNKNNNKNNNNNNNNNNNNNNN
2gis-1-A	GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGAUGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCAA	((((((((..(((.((((((((([[[[[))))...))))))[)){()(((..)))....]....]]]]((((((..))))))..])))))))).}	SSSSSSSSMMSSSBSSSSSSSSSHHHHHSSSSBBBSSSSSSBSSMSSSSSHHSSSMMMMMMMMMMMMMSSSSSSHHSSSSSSMMMSSSSSSSSEE	NNNNNNNNNNNNNNNNNNNNNNNKKKKKNNNNNNNNNNNNNKNNKNNNNNNNNNNNNNNKNNNNKKKKNNNNNNNNNNNNNNNNKNNNNNNNNNK
6gsj-1-3K	GCUGAUAUAGCUCAGUAGAGCGCACCCUUGGUAAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCA	((()((.([{..[)(..]].}((((((((...))))))))....[[.[[.....).]].]].))..))....	SSSSSSMMSBBBSHHHHSSMMSSSSSSSSHHHSSSSSSSSMMMMSSISSHHHHHHHSSISSMSSMMSSEEEE	NNNNNNNKNKNNNKKNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNN
6gsl-1-3L	GCAUCUGUAGCUCAGCUGGAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAACCUCCCGGAUGCACCA	(((((((.([[.(....{<{))]](((((.(......))))))...}((((((}>.).))))))))))))....	SSSSSSSMMSSISHHHHHHHSISSSSSSSBSHHHHHHSSSSSSMMMMSSSSSSHHHSBSSSSSSSSSSSSEEEE	NNNNNNNNKNNNNNNNNKKKNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNN
2gtt-1-X	CCACCAACCCCACACACCCCCCCACCCCCACCCACCACACAAAACCCCCAAAACCCCCCCAACCCCCAAACCCCACCAACCCCACCAACCCCACAAACC	....(.)............................................................................................	EEEESHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4gxy-1-A	GGCGGCAGGUGCUCCCGACGUCGGGAGUUAAAAGGGAAGCCGGUGCAAGUCCGGCACGGUCCCGCCACUGUGACGGGGAGUCGCCCCUCGGGAUGUGCCACUGGCCGGCCGGGAAGGCGGAGGGGCGGCGAGGAUCCGGAGUCAGGAAACCUGCCUGCCGUC	((((((((([[(((.(((..)).))))[..)](][.([(((((([..){[)))))<.)(.....).((((].](((((((((((((.((.....(.(((((((((()))))))..)))))).)))))))().)))))).}]>)))).).]..].))))))))	SSSSSSSSISSSSSBSSSHHSSBSSSSSHHHSMSSMSISSSSSSHHHSBBSSSSSIISSHHHHHSMSSSSIIISSSSSSSSSSSSSISSBBBBBSBSSSSSSSSSSSSSSSSSBBSSSSSSISSSSSSSSSMSSSSSSIIIISSSSMMMSMMSISSSSSSSS	NNNNNNNNKNNNNNNNNNNNNNNNNNNNNNKNKNNNNKNNNNNNKNNNKKNNNNNKNNNNNNNNNNNNNNKNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKKNNNNNKNNNNNNNNNNNNNN
1h3e-1-B	GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUGNAAAACCGUUGGCGUAUGCCUUCGCUGGNNCGAAUCCAGCCCUGCCCA	((((((((([[[))(.{<.)({.]]]((((((((..)).))))))(((....))))}.((((((}>.)..)))))))))))).	SSSSSSSMMSSSIISHHHHSIIISSSSSSSSSSSHHSSBSSSSSSSSSHHHHSSSMMMSSSSSSHHHSBBSSSSSSSSSSSSE	NNNNNNNKKNNNKKNNKKNNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKNNNNNNNKKNNNNNNNNNNNNNNNNN
2hvy-1-E	GGGUCCGCCUUGAUGCCCGGGUGAAAGCAUGAUCCCGGGUAAUAUGGCGGACCCACA	(((((((((.(...((((((((((......)))))))))).)...)))))))))...	SSSSSSSSSISIIISSSSSSSSSSHHHHHHSSSSSSSSSSISIIISSSSSSSSSEEE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3iab-1-R	GGACUCAGUAAUAUGCUUUGGAAACGAAGCUUACAAAAUGGAGUCC	((((((...(..).(((((((..)))))))..........))))))	SSSSSSMMMSHHSMSSSSSSSHHSSSSSSSMMMMMMMMMMSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3icq-1-D	GCGGAUUUAACUCAGUUGGGAGAGCGCGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA	(((((((([{{.[)(..<...]]}}((.))...)((((((>..)..))))))))))))....	SSSSSSSMMSSISHHHHHHHHSISSSSHSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKNNKNNNNKNNNNNNNNNNKNNNNNNKNNNNNNNNNNNNNNNNNNNNN
6ifo-1-D	GGUGCGCUUGGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUU	............((((((..(((((..)))))....)))))).((((..).))).....((((((..))))))((((.(....)))))..	EEEEEEEEEEEESSSSSSIISSSSSHHSSSSSIIIISSSSSSXSSSSHHSBSSSXXXXXSSSSSSHHSSSSSSSSSSBSHHHHSSSSSEE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1i6u-1-C	GGGCCCGGUAAGUCUCUUCGGAGAUACUGCCGGGCCC	(((((((((()((((((..)))))()).)))))))))	SSSSSSSSSSSSSSSSSHHSSSSSSSSMSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3ivn-1-A	GGCCAGUAUAACCUCAAUGAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGACUACUGGUC	((((((((((.(((((((.[([.)[)))))))).(..)).(((((.](()])].)))))..))))))))	SSSSSSSSSSBSSSSSSSIISHHSISSSSSSSSMSHHSSMSSSSSIISSSBSIISSSSSMMSSSSSSSS	NNNNNNNNNNNNNNNNNNNKNKNNKNNNNNNNNNNNNNNNNNNNNNKNNNKNKNNNNNNNNNNNNNNNN
3iwn-1-A	CACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACGGCAUUGCACUCCGCCGUAGGUAGCGGGGUUACCGAUGGG	((((.(.)(.(((.((((((((.[)))))))).))).(.(((({)((((]([)((((.(.)......)))).])))}.)..)))).))).))..	SSSSMSHSSMSSSISSSSSSSSHHSSSSSSSSISSSMSBSSSSHSSSSSMSHSSSSSISHSIIIIIISSSSMMSSSBBSMMSSSSMSSSBSSEE	NNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNKNNNNNKNKNNNNNNNNNNNNNNNNNNNNKNNNKNNNNNNNNNNNNNNNNN
5j01-1-A	GUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAACUGCGCCGUGGCGACAUGGCGUGGGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUGUUCGCAGGGGAAGG...	(((([{{{{{[{.{{{{{{{{{{{.((((((<..)..)))))(((((((<AAAAAAA.))))))).{{{{{B{{{{{((((((((((((.B)))))))))))).C)]}(}}}}.}}}}}}((((((([[[[[(((.[).))CD{{{{{]..[[[{{{{{{{{{{{{{{{{{{)((((.]......)))).}.}}}}>aaaaaaa...}}}}}}}}}}}}}].]}}}}}]]]]]....))))))>..}}}}}}}}}}})])}}}}}((((((b((..)).))))))[(((((((((.((()((((((....)))))).)))...	EEEEESSSSSISBSSSSSSSSSSSMSSSSSSHHHSBBSSSSSSSSSSSSHHHHHHHHHSSSSSSSMSSSSSISSSSSSSSSSSSSSSSSHHSSSSSSSSSSSSBBBBSBSSSSISSSSSSSSSSSSISSSSSSSSHHSBSSMMSSSSSBBBSSBSSSSSSSSSSSSSSSSSSISSSSHHHHHHHHSSSSISBSSSSBBBBBBBBBBBSSSSSSSSSSSSSSBSSSSSSSSSSSIIIISSSSSSMMMSSSSSSSSSSSIIISSSSSSSSSSSISSHHSSISSSSSSSMMSSSSSSSBSSSSSSSSSSHHHHSSSSSSMSSS...	KKKKKNNNNNKNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNKKKKKKKKNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNKKKNKNNNNNNNNNNNNNNNNNKNNNNNNNNNKNNNNKKNNNNNKNNNNKNNNNNNNNNNNNNNNNNNKNNNNNKNNNNNNNNNNNNNNNNNKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNKKKNNNNNNNNNNNKNNNNNNNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...
4jrc-1-A	GGAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC	(((((((...((((..(([[{)<<<<<<...]}...)].>>>>>>))))).))))))	SSSSSSSBBBSSSSMMMSHHHSSSSSSSHHHHHHHHHHHSSSSSSSSSSSBSSSSSS	NNNNNNNNNNNNNNNNKNKKKNNNNNNNNNNKKNNNKKNNNNNNNNNNNNNNNNNNN
1j1u-1-B	CCGGCGGUAGUUCAGCCUGGUAGAACGGCGGACUGUAGAUCCGCAUGUCGCUGGUUCAAAUCCGGCCCGCCGGA	(((((((([{{.[)(...<A..]]}}((((((((..).)))))))...)((((((>a.)..)))))))))))).	SSSSSSSMMSSISHHHHHHHHHSISSSSSSSSSSHHSBSSSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSE	NNNNNNNKKNNNNKKNNNKKNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNN
3kfu-1-K	UCCGCGGUAGCUCAGGGAGAGCAGCCGGCUGUUAACCGGUAGGUCGCAGGNNCGAGUCCUGCCCGCGGAGCCA	(((((((([{{.[)(<A.]]}}(((((((.....)))))))...)((((((>a.)..))))))))))))....	SSSSSSSMMSSISHHHHHSISSSSSSSSSHHHHHSSSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKKKNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN
1kh6-1-A	GGCGGAACCGUACACCGGAAUCCGAAAGGAUUUGGGCGUGCCCCCGCC	((((((((((.....)))))((((..))))...((((())))))))))	SSSSSSSSSSHHHHHSSSSSSSSSHHSSSSMMMSSSSSSSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3k0j-1-E	GCGACUCGGGGUGCCCUCCAUUGCACUCCGGAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUCGC	((((((((((([(((.(((.(.)......))))))[..)].]..)))).(..((((((.((((((.)).)))))).)))))))))))	SSSSSSSSSSISSSSBSSSISHSIIIIIISSSSSSSHHHSMSIISSSSMSBBSSSSSSBSSSSSSHSSBSSSSSSBSSSSSSSSSSS	NNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1kog-1-I	GGCGUAUGUGAUCUUUCGUGUGGGUCACCACUGCGCC	((((((.((((((((.)()..))))))))...)))))	SSSSSSBSSSSSSSSHSSSMMSSSSSSSSBBBSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
5kpy-1-A	GGACACUGAUGAUCGCGUGGAUAUGGCACGCAUUGAAUUGUUGGACACCGUAAAUGUCCUAACACGUGUCC	((((((((([[{(.(((((.{({.){))))))(.<.).)]..(((((}(()})}))))).}]>))))))))	SSSSSSSSISSMSBSSSSSIISHHSISSSSSSSHHHSMMSMMSSSSSISSSBSISSSSSMMSISSSSSSSS	NNNNNNNNKNNKNNNNNNNNKNKNNKNNNNNNNNKNNNKNNNNNNNNKNNNKNKNNNNNNKNKNNNNNNNN
4kr6-1-C	GCCCGGAUAGUGUCCUUGGGAAACCAAGUCCGGGCACCA	((((((((.......((()......))))))))))....	SSSSSSSSBBBBBBBSSSSBBBBBBSSSSSSSSSSEEEE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3ktw-1-C	AGAUAGUCGUGGGUUCCCUUUCUGGAGGGAGAGGGAAUUCCACGUUGACCGGGGGAACCGGCCAGGCCCGGAAGGGAGCAACCGUGCCCGGCUAUC	.(((.(((((((((((((((((((.[))))))))))))[))))))...()((((({..]((((.(((((...])))))).))))})))).)..)))	ESSSISSSSSSSSSSSSSSSSSSSHHSSSSSSSSSSSSBSSSSSSMMMSSSSSSBSIIISSSSBSSSSSHHHHSSSSSSBSSSISSSSSMSIISSS	NNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNKNNNNNNNNNNNNNNNKNNNKNNNNNNNNNNNNNKNNNNNNNNNNKNNNNNNNNNNNN
4kzd-1-R	GGACGCGACCGAAAUGGUGAAGGACGGGUCCAGUGCGAAACACGCACUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC	.((((((((((((((((((((([.{)].(((((((((.(..))))))))..))([.[.).]]}))))))))))).)))))))))	ESSSSSSSSSSSSSSSSSSSSMSHHHSMSSSSSSSSSBSHHSSSSSSSSBBSSMSBSHHHSSMSSSSSSSSSSSBSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNKNNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNKNNNKNNNNNNNNNNNNNNNNNNNNN
4lvw-1-A	GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCAGG	(((((([[{{{{{{{{{{({.){{<{{{{{{{{.[.)((((].]}}}}}}}}.}}.(((..)))}.}.}}}}}}}}}.)))).))))).]>	SSSSSIIISSSSSSSSSSSHHSSSISSSSSSSSISHHHHHHSIISSSSSSSSISSMSSSHHSSSMMSBSSSSSSSSSIIIIIISSSSSEEE	NNNNNKKKNNNNNNNNNNNKNNNNKNNNNNNNNNNNKKKKKNNKNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNKKKKNNNNNNNKK
6mj0-1-A	AAGUUCUCGAUCUUUAAAAUCGUUAGCUCGCCAGUUAGCGAGGUCUGCGAAAGCAGAUAAUCGGGUGCAACUCCCGCCCUUUCUCCGAGGGUCAUCGGAAC	((().[{{{.[[))...]]]}}}..(((((([[{...)))))(((((((..)))))))...(((((]}.)].))))(((.....[[[[))).).]]]]...	EESSXXSSSISSHHHHHSSISSSXXXSSSSSHHHHHHSSSSSSSSSSSSHHSSSSSSSXXXSSSSSHHHSBBSSSSXXXXXXXXSSSSHHHHHHSSSSEEE	KKNNNKNNNNNNKKNNNNNKNNNNNKNNNNNKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKNNKNNNNNKKKNNNNNNNNNKKKNKNNNNNNNN
4m4o-1-B	GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC	(((((((((((((((..([..)((((.(.(.)(.)..]).)))))))))))))))))))	SSSSSSSSSSSSSSSMMSHHHSSSSSISMSHSSHSMMMSISSSSSSSSSSSSSSSSSSS	NNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNN
3moj-1-A	GGCUCAUCACAUCCUGGGGCUGGAAACGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUAGCUA	(((..((((((((((((((((((..)))))))).)))))(((((.....))))).....))))).))).	SSSIISSSSSSSSSSSSSSSSSSHHSSSSSSSSBSSSSSSSSSSHHHHHSSSSSMMMMMSSSSSISSSE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1mzp-1-B	GGGAUGCGUAGGAUAGGUGGGAGCCGCAAGGCGCCGGUGAAAUACCACCCUUCCC	((((((.([({.<.)AAAAAA(((((..)))))......)]}>aaaaaa))))))	SSSSSSMMMSHHHHSSSSSSSSSSSSHHSSSSSBBBBBBBBBBSSSSSSSSSSSS	NNNNNNNKKNKNKNNNNNNNNNNNNNNNNNNNNNNNNNNKKKKNNNNNNNNNNNN
2nue-1-C	GGGACAAGCGCAAGGUCAUUCGCAAGAGUGGCCUUGCGCUUGUCCC	((((((((((((((((((((((..))))))))))))))))))))))	SSSSSSSSSSSSSSSSSSSSSSHHSSSSSSSSSSSSSSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4o26-1-E	GGAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUCUCUGUUGUUCC	(((((..)((((.((((...)))))))).(((((.)))))...))))	SSSSSHHSSSSSBSSSSHHHSSSSSSSSMSSSSSHSSSSSMMMSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
2oiu-1-P	GGACCUCGGCGAAAGCCGUUCGACCAGCGAAAGCUCUUAGACAGGAGGUUAGGUGCUCCGAAAGGAGCACU	(((((((((((..))))(.(((((.((((..)))))).))))..)))))))(((((((((..)))))))))	SSSSSSSSSSSHHSSSSSBSSSSSBSSSSHHSSSSSSBSSSSMMSSSSSSSSSSSSSSSSHHSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4oji-1-A	CCGCCUAACACUGCCAGCCGGUCCCAAGCCCGGAUAAAAGUGGAGGGGGCGG	(((((..((((((((.)[[[[({{{{)))]]]](..).)))))}}}})))))	SSSSSIISSSSSMMSHSSSSSSHHHHSBBSSSSSHHSMSSSSSIIIISSSSS	NNNNNNNNNNNNKKNNNNNNNNKKKKNKKNNNNNNNNNNNNNNKKKKNNNNN
4oqu-1-A	GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACACCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGGUCCGAA	(((((..(((((((..)))))[)){()(((((.{{{{{.))).))....]..((((((..)))))))))))((((((..))))))......}}}}}.}	SSSSSMMSSSSSSSHHSSSSSBSSMSSSSSSSHHHHHHHSSSBSSMMMMMMMSSSSSSHHSSSSSSSSSSSSSSSSSHHSSSSSSEEEEEEEEEEEEE	NNNNNNNNNNNNNNNNNNNNNKNNKNNNNNNNNKKKKKNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKKKKNK
3owi-1-A	GGCUCUGGAGAGAACCGUUUAAUCGGUCGCCGAAGGAGCAAGCUCUGCGGAAACGCAGAGUGAAACUCUCAGGCAAAAGGACAGAGUC	((((((((((((.((((......)))))[.((..(((((.((((((((((..)))))))))).).))).))))]....))))))))))	SSSSSSSSSSMSBSSSSHHHHHHSSSSSSISSBBSSSSSISSSSSSSSSSHHSSSSSSSSSSISBSSSBSSSISMMMMSSSSSSSSSS	NNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNN
4pdb-1-I	GGGAUGCUCAGUGAUCCUUCGGGAUAUCAGGGCAUCCC	((((((((((([)]((((..))))(.).))))))))))	SSSSSSSSSSMSHSSSSSHHSSSSSHSMSSSSSSSSSS	NNNNNNNNNNKNKNNNNNNNNNNNNNNNNNNNNNNNNN
3pdr-1-X	GGGCUUCGUUAGGUGAGGCUCCUGUAUGGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGGAUGCUUGUCCUAUGCCAUACAGUGCUAAAGCUCUACGAUUGAAGCCCA	(((((((([[{{{{{{{{{(){{{{{{{{{{{..{{{{{{{[[[[[.[[.[[[[[.)]]]]]]]..]]]]].(...(((((((((.<....])))))))))).}.}}}}}}(((......)))}.}}}}}}}}}}.}}}}.}}}}}.].().>))))))).	SSSSSSSMSISSSSSSSSSSSSSSSSSSSSSSMMSSSSSSSSSSSSISSBSSSSSHHSSSSSSSIISSSSSMSBBBSSSSSSSSSHHHHHHHSSSSSSSSSSMSBSSSSSSSSSHHHHHHSSSSBSSSSSSSSSSMSSSSBSSSSSISMSSMMSSSSSSSE	NNNNNNNKNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNN
4plx-1-A	GGAAGGUUUUUCUUUUCCUGAGGCGAAAGUCUCAGGUUUUGCUUUUUGGCCUUUCUUAAAAAAAAAAAAAGCAAAA	.((((([{<ABCDEFG(((((((((..)))))))))....D........)))))...........]}>abcddefg	ESSSSSIIIIIIIIIISSSSSSSSSHHSSSSSSSSSIIIIIIIIIIIIISSSSSEEEEEEEEEEEEEEEEEEEEEE	NNNNNNKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNKKKKKKKKKKK
4pmi-1-A	GGGAGUAUAUGGGCGCACUUCGGUGACGGUACAGGCUCCU	((((((..(((((((((((..)))).))).))))))))))	SSSSSSBBSSSSSSSSSSSHHSSSSBSSSBSSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4pqv-1-A	GGGUCAGAUCGGCGAAAGUCGCCACUUCGCCGAGGAGUGCAAUCUGUGAGGCCCCAGGAGGACUGGGU	..(([[[[[(((((..))))).[)((((.....)))).]).]]]]](.)...((((((...)))))).	EEEESSSSSSSSSSHHSSSSSMSISSSSHHHHHSSSSISMMSSSSSSHSXXXSSSSSSHHHSSSSSSE	NNKKNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1p6v-1-B	GAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGC	(..(..(((((((((..)))))))))).[[[[[[..)]..]]]]]	EEESBBSSSSSSSSSHHSSSSSSSSSSXSSSSSSHHHSBBSSSSS	KNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNN
1qf6-1-B	GCCGAUAUAGCUCAGUUGGUAGAGCAGCGCAUUCGUAAUGCGAAGGUCGUAGGNNCGACUCCUAUUAUCGGCACCA	(((((((([{{.[)(..<A..]]}}((((((...()..))))))...)((((((>a.)..))))))))))))....	SSSSSSSMMSSISHHHHHHHHSISSSSSSSSIIISSIISSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKKNNNNKKNNKKNNNKNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN
4qk9-1-A	CGCUGAAUUCCCUGAAGGGAAACGGGGGACCCAAUGGGGUGAAUCCCACGUAAGUGGGUAGGGCUAGUCUCUUUCGGCCCGAACCCGUCAGCUAACCUCGUAAGCGUGGAAAGAGGGAA	([[[[[.(((((....))))){.[[[[[[.[[...[[[[[[(.(((((((..)))))))[)[[[[).()((((((]]]].]]]]]]]...]]].]]]]]]}]]]]().)))))).....	ESSSSMMSSSSSHHHHSSSSSSISSSSSSBSSIIISSSSSSSISSSSSSSHHSSSSSSSISSSSSIISSIIIIIISSSSMMSSSSSSIIISSSBSSSSSISSSSSSSEEEEEEEEEEEE	KNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNKNNNKKKKKKNNNNNKNNNNNNNNNNNNNNNNNNKNNNNNNNNKKKKKKNNNNN
2qus-1-A	GGGAGCCCUGUCACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACAAAACAGGGCUCCCGAAUU	(((((((((((((((((([()[..{))))))((<).)((((...]]})))))>))))))))))).....	SSSSSSSSSSSSSSSSSSISSIIIISSSSSSSSHSBSSSSSHHHHHHSSSSSBSSSSSSSSSSSEEEEE	NNNNNNNNNNNNNNNNNNKNNKNNKNNNNNNNNKNNNNNNNNNNKKKNNNNNKNNNNNNNNNNNNNNNN
2qwy-1-A	GCGCGGCGAUUUAACCGUAUUGCAGUCGCGUGAUAAAUGUAGCUAAAAAGGAA	.(((((((([{<(.AAA)A..))[)))))).........]...]}>a.aaa..	ESSSSSSSSIIISHHHHSIIISSBSSSSSSEEEEEEEEEEEEEEEEEEEEEEE	NNNNNNNNNKKKNNKKKNKNNNNKNNNNNNNNNNNNNNNKNNNKKKKNKKKNN
3q3z-1-V	GCGCGGAAACAAUGAUGAAUGGGUUUAAAUUGGGCACUUGACUCAUUUUGAGUUAGUAGUGCAACCGACCGUGCUGG	((((((((((...((((((((((((..(..[{{[[[[[))))))))))))))))...]]]]]].}}[))))))).].	SSSSSSSSSSBBBSSSSSSSSSSSSBBSHHHHHHHHHHSSSSSSSSSSSSSSSSBBBBBBBBBBBBBSSSSSSSEEE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKKKKKKKNNNNNNNNNNNNNNNNNNNKKKKKKNKKKNNNNNNNNKN
4rdx-1-C	GGUGAGCGUAGCUCAGCUGGUUAGAGCACCGGACUGUGGUCCGGGGGUCGUGGGUUCAAGUCCCAUCGCUCACCCCA	((((((((([{{.[)(.<<A...]]}}((((((..()..))))))...)(((((.>a.>..)))))))))))))...	SSSSSSSSMMSSISHHHHHHHHHSISSSSSSSSIISSIISSSSSSMMMMSSSSSHHHHHHHSSSSSSSSSSSSSEEE	NNNNNNNNKKNNNNKKNKKKNNNNKNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNKNNNNNNNNNNNNNNNNNN
3r4f-1-A	GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC	((((((((((((((......((((((.).)))))))))))))))..((((((....))))))))))	SSSSSSSSSSSSSSBBBBBBSSSSSSHSBSSSSSSSSSSSSSSSMMSSSSSSHHHHSSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4rge-1-A	UUUUUAAUGAAGCCACAGGCCUGUGAGGGUCCUAAGCCCCUAAUUCAGAAGGGAAA	([[(..((((((((((((())))))[[[[({{..)))]]]]..)))))))}}.]].	ESSSBBSSSSSMMSSSSSSSSSSSSSSSSSHHHHSBBSSSSMMSSSSSSBBBBSSE	KNNNNNNNNNNKKNNNNNNNNNNNNNNNNNKKNNNKKNNNNNNNNNNNNKKKNNNN
4rmo-1-B	AAGUUUACCACUGACCGAUAUGUGGUAUAUAAAUGGUCGGGUUGA	......((((((.[[[[[[).))))).........]]]]]]....	EEEEEESSSSSSHHHHHHHSBSSSSSEEEEEEEEEEEEEEEEEEE	NNNNNNNNNNNNNKKKKKKNNNNNNNNNNNNNNNNKKKKKKNNNN
4r4p-1-A	GGCGCUGUGUCGCAAUCUGCGAAGGGCGUCGUCGGCCCGAGCGGUAGUAAGCAGGGAACUCACCUCCAAUGAAACACAUUGUCGUAGCAGUUGACUACUGUUAUGUGAUUGGUAGAGGCUAAGUGACGGUAUUGGCGUAAGCCAAUACCGCGGCACAGCACAAGCCCGCUUGCGAGAUUACAGCGC	.((((((((((..(([(((((..((((((..).))))).)))))))((((((([[[[.(((((((((((((.....)))))..(((((((.(..)..)))))))....))))).)))[[[).(((((((((((((((..)))))))))))..))))]]]....]]]])))))).]))).)))))))	ESSSSSSSSSSMMSSBSSSSSIISSSSSSHHSBSSSSSISSSSSSSSSSSSSBSSSSMSSSSSSSSSSSSSHHHHHSSSSSMMSSSSSSSISHHSIISSSSSSSMMMMSSSSSBSSSSSSBBSSSSSSSSSSSSSSSHHSSSSSSSSSSSBBSSSSSSSMMMMSSSSSSSSSSMMSSSBSSSSSSS	NNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNN
3r9x-1-C	CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU	(((((((((((.).))))))))))...........	SSSSSSSSSSSHSBSSSSSSSSSSEEEEEEEEEEE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4rzd-1-A	GAGCAACUUAGGAUUUUAGGCUCCCCGGCGUGUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCGGUCAAAAUUCAUCCGCCGGAGG	(((((([[{<AAA....))))))((((((((((....))))))))))...(((((((((((........))))))).)))).]}>aaa...........]	SSSSSSHHHHHHHHHHHSSSSSSSSSSSSSSSSHHHHSSSSSSSSSSXXXSSSSSSSSSSSHHHHHHHHSSSSSSSBSSSSEEEEEEEEEEEEEEEEEEE	NNNNNNKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKKKKKNNNNNNNNNNNK
3ski-1-A	GGCCUUAUACAGGGUAGCAUAAUGGGCUACUGACCCCGCCUUCAAACCUAUUUGGAGACUAUAAGGUCG	(((((((((((()(((((..(..)[))))).)....{).(((((((]...)))))))..)))))))))}	SSSSSSSSSSSSSSSSSSIISHHSISSSSSMSBBBBBSMSSSSSSSHHHHSSSSSSSMMSSSSSSSSSE	NNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNKNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNK
3suh-1-X	GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUACGUUUACCGCAUCUCGCUGUUC	.........((((((((((((([.)((.(((((((((((.{{{{.)).))))))))).)).(((((..)))))].).)))))))))))..}}}}.......	EEEEEEEEESSSSSSSSSSSSSHHSSSISSSSSSSSSSSHHHHHHSSBSSSSSSSSSISSMSSSSSHHSSSSSMMSBSSSSSSSSSSSEEEEEEEEEEEEE	NNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNKKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNKKKKNNNNNNN
5tf6-1-D	GGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGCCGUUUUACAAAGAGACC	((((.((((((..................(((....)))..)))))).))))	SSSSISSSSSSIIIIIIIIIIIIIIIIIISSSHHHHSSSIISSSSSSISSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
5tpy-1-A	GGGUCAGGCCGGCGAAAGUCGCCACAGUUUGGGGAAAGCUGUGCAGCCUGUAACCCCCCCACGAAAGUGGG	..(([[[[[(((((..))))).[)(((((.{{{{.){)))).]).]]]]]}..}}}}((((((..))))))	EEEESSSSSSSSSSHHSSSSSMSISSSSSHHHHHHSBSSSSISMMSSSSSXXXXXXXSSSSSSHHSSSSSS	NNKKNNNNNNNNNNNNNNNNNNNKNNNNNNKKKKNNKNNNNNNKNNNNNNKNNKKKKNNNNNNNNNNNNNN
1u63-1-B	GGGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACUUCACUCCC	.(((((((((((((((((((....)))).)))))....)))))))))).	ESSSSSSSSSSSSSSSSSSSHHHHSSSSBSSSSSBBBBSSSSSSSSSSE	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
5ud5-1-D	GGAAACCUGAUCAUGUAGAUCGAAUGGACUCUAAAUCCGUUCAGCCGGGUUAGAUUCCCGGGGUUUCCGCCA	(((((((.(((([.[{.))))((((((((.....))))))))..((((((]}.)].))))))))))))....	SSSSSSSMSSSSHHHHHSSSSSSSSSSSSHHHHHSSSSSSSSMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNNNNNNKNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKNNKNNNNNNNNNNNNNNNNN
5u3g-1-B	GGUGACUAGGGUUCCGGCGAAAGCCGGUCCGAGAGUUACCGACCGCCGAAAGGCGGUUACACGGCGGGAAAAAAGCCCGGGAGGA	((((((((((([)](((((..)))))..))))[.))))))((((((((..)))))))).(][[[(((((....).)))))]]]()	SSSSSSSSSSMSHSSSSSSHHSSSSSMMSSSSBBSSSSSSSSSSSSSSHHSSSSSSSSXXXSSSSSSSSHHHHSBSSSSBSSSSS	NNNNNNNNNNKNKNNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNKKNNNNNNNNNNNNNNNNNNKNNNNN
3u4m-1-B	GGGAUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUUCCC	((((((([{(<.[[)AAAAAA{{{{...{{{{{{{{{{....)]}}}}}}}}}}}}}}...]..]}>.aaaaaa))))))	SSSSSSMMMSHHHHSSSSSSSSSSSBBBSSSSSSSSSSHHHHHHSSSSSSSSSSSSSSBBBBBBBBBBSSSSSSSSSSSS	NNNNNNKKKNKNKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKNNNNNNNNNNNNNNNNNKNNKKKNNNNNNNNNNNNN
1un6-1-E	GCCGGCCACACCUACGGGGCCUGGUUAGUACCUGGGAAACCUGGGAAUACCAGGUGCCGGC	((((((....(((..)))(((((((((()((((((....)))))).)))))))))))))))	SSSSSSMMMMSSSHHSSSSSSSSSSSSSSSSSSSSHHHHSSSSSSMSSSSSSSSSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4u7u-1-L	AUAAACCGGGCUCCCUGUCGGUUGUAAUUGAUAAUGUUGAGAGUUCCCCGCGCCAGCGGGG	.......()..........()........................(((((((..)))))))	EEEEEEESSXXXXXXXXXXSSXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSSHHSSSSSSS	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4uyk-1-R	GGGGCUAGGCCGGGGGGUUCGGCGUCCCCUGUAACCGGAAACCGCCGAUAUGCCGGGGCCGAAGCCCGAGGGGCGGUUCCCGAAGCCGCCUCUGUAAGGAGGCGGUGGAGGGUUCCCACCCUCGGGCGUGCCUC	(((((((((([(((((([.{{{{[))))))...)(((((]]..}}}}....)))))].))))((((((((((((((((((((((((((((((((.).))))))))))))))))))))))))))))))).)))))	SSSSSSSSSSISSSSSSHHHHHHHSSSSSSIIISSSSSSHHHHHHHHHHHHSSSSSMMSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSHSBSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSMSSSSS	NNNNNNNNNNKNNNNNNKNKKKKKNNNNNNNNNNNNNNNKKNNKKKKNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
4v83-1-AV	UCGCUCAAACAUUAAGUGGUGUUGUGCGACACUUA	((((((.(((((.[[[[[)))))))))))]]]]].	SSSSSSBSSSSSHHHHHHSSSSSSSSSSSEEEEEE	NNNNNNNNNNNNNKKKKKNNNNNNNNNNNKKKKKN
4v51-1-AW	GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA	((((((((([)[[)(..{<..]].](((((((.....)))))))...)((((((}>.)..))))))))))))....	SSSSSSSMSHSSSHHHHHHHHSSMMSSSSSSSHHHHHSSSSSSSMMMMSSSSSSHHHSBBSSSSSSSSSSSSEEEE	NNNNNNNKNKNNNKKNNKKNNNNNKNNNNNNNNNNNNNNNNNNNNNNKNNNNNNKKNNNNNNNNNNNNNNNNNNNN

End of preview. Expand in Data Studio

bpRNA-spot

bpRNA-spot is a collection of the datasets used by SPOT-RNA for RNA secondary structure prediction.

The dataset is released as a composite repository, bpRNA-spot, and three numbered component repositories:

bpRNA-spot-0: the initial bpRNA split, TR0, VL0, and TS0.
bpRNA-spot-1: the PDB transfer-learning split, TR1, VL1, and TS1.
bpRNA-spot-2: the NMR-only evaluation split, TS2.

bpRNA-spot concatenates the components in order:

train: TR0 + TR1
validation: VL0 + VL1
test: TS0 + TS1 + TS2

The TR0/VL0/TS0 split is a subset of bpRNA-1m. It applies CD-HIT (CD-HIT-EST) to remove sequences with more than 80% sequence similarity from bpRNA-1m. It further randomly splits the remaining sequences into training, validation, and test sets with a ratio of approximately 8:1:1.

The TR1/VL1/TS1 split contains high-resolution PDB RNAs used for transfer learning. TS2 contains 39 RNAs solved by NMR and is used for post-training evaluation.

All secondary structures are stored as dot-bracket notation. For the sequence/label splits, base pairs that would make a nucleotide pair with multiple partners are removed before converting to dot-bracket notation. Non-A/C/G/U symbols in those sequence files are normalized to N.

Schema

Column	Description
`id`	Identifier of the sequence.
`sequence`	RNA sequence.
`secondary_structure`	Secondary structure in dot-bracket notation. Pseudoknots may use bracket tiers beyond `()`.
`structural_annotation`	bpRNA-style structural annotation generated from the stored dot-bracket structure.
`functional_annotation`	bpRNA-style functional annotation generated from the stored dot-bracket structure.

Disclaimer

This is an UNOFFICIAL release of the bpRNA-spot by Jaswinder Singh, et al.

The team releasing bpRNA-spot did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.

Related Datasets

bpRNA-1m: A database of single molecule secondary structures annotated using bpRNA.
bpRNA-new: A dataset of newly discovered RNA families from Rfam 14.2, designed for cross-family validation to assess generalization capability.
RNAStrAlign: A database of RNA secondary with the same families as ArchiveII, usually used for training.

License

This dataset is licensed under the GNU Affero General Public License.

For additional terms and clarifications, please refer to our License FAQ.

SPDX-License-Identifier: AGPL-3.0-or-later

Citation

@article{singh2019rna,
  author    = {Singh, Jaswinder and Hanson, Jack and Paliwal, Kuldip and Zhou, Yaoqi},
  journal   = {Nature Communications},
  month     = nov,
  number    = 1,
  pages     = {5407},
  publisher = {Springer Science and Business Media LLC},
  title     = {{RNA} secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning},
  volume    = 10,
  year      = 2019
}

@article{darty2009varna,
  author    = {Darty, K{\'e}vin and Denise, Alain and Ponty, Yann},
  journal   = {Bioinformatics},
  month     = aug,
  number    = 15,
  pages     = {1974--1975},
  publisher = {Oxford University Press (OUP)},
  title     = {{VARNA}: Interactive drawing and editing of the {RNA} secondary structure},
  volume    = 25,
  year      = 2009
}

@article{berman2000protein,
  author    = {Berman, H M and Westbrook, J and Feng, Z and Gilliland, G and Bhat, T N and Weissig, H and Shindyalov, I N and Bourne, P E},
  journal   = {Nucleic Acids Research},
  month     = jan,
  number    = 1,
  pages     = {235--242},
  publisher = {Oxford University Press (OUP)},
  title     = {The Protein Data Bank},
  volume    = 28,
  year      = 2000
}

The artifacts distributed in this repository are part of the MultiMolecule project. If you use MultiMolecule in your research, you must cite the MultiMolecule project as follows:

@software{chen_2024_12638419,
  author    = {Chen, Zhiyuan and Zhu, Sophia Y.},
  title     = {MultiMolecule},
  doi       = {10.5281/zenodo.12638419},
  publisher = {Zenodo},
  url       = {https://doi.org/10.5281/zenodo.12638419},
  year      = 2024,
  month     = may,
  day       = 4
}

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