Search is not available for this dataset
name stringlengths 18 62 | sequence stringlengths 1 300 | reactivity listlengths 1 300 | seqpos listlengths 1 300 | class stringclasses 5 values | dataset stringclasses 23 values |
|---|---|---|---|---|---|
Mauger,2019 U_L37 nLUC mRNA | TTCGTGTCGTCCTAATGTACCGTTTTGAAGAAGAACTATTTCTACGTAGCCTACAGGACTACAAAATTCAGAGCGCACTACTAGTCCCAACTCTATTTAGCTTTTTTGCAAAAAGCACTCTAATTGACAAATACGACCTAAGCAATCTACATGAAATTGCAAGCGGAGGAGCACCACTAAGCAAAGAAGTCGGAGAAGCAGTCGCAAAACGTTTTCATCTACCAGGAATTCGTCAGGGATACGGACTAACTGAAACTACTAGCGCAATTCTAATTACTCCAGAAGGAGACGACAAACCAG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L37 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAAGACGCAAAAAATATTAAAAAAGGACCAGCACCATTTTACCCACTAGAAGACGGAACTGCAGGAGAACAGCTACATAAAGCAATGAAACGTTACGCACTAGTCCCAGGAACTATTGCATTTACTGACGCACATATTGAAGTCGACATTACTTACGCAGAATACTTTGAAATGAGCGTCCGTCTAGCAGAAGCAATGAAACGTTACGGACTAAATACTAATCATCGTATTGTCGTCTGTAGCGAAAATA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L37 nLUC mRNA | TTCGTGAAATTCTAATTAAAGCAAAAAAAGGAGGAAAAATTGCAGTCTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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Mauger,2019 U_L37 nLUC mRNA | CGTATTGTCGTCTGTAGCGAAAATAGCCTACAGTTTTTTATGCCAGTCCTAGGAGCACTATTTATTGGAGTCGCAGTCGCACCAGCAAATGACATTTACAATGAACGTGAACTACTAAATAGCATGGGAATTAGCCAGCCAACTGTCGTCTTTGTCAGCAAAAAAGGACTACAGAAAATTCTAAATGTCCAGAAAAAACTACCAATTATTCAGAAAATTATTATTATGGACAGCAAAACTGACTACCAGGGATTTCAGAGCATGTACACTTTTGTCACTAGCCATCTACCACCAGGATTT | [
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Mauger,2019 U_L38 nLUC mRNA | GTATAAGGGTTATCAAGTAGCACCGGCAGAGCTCGAGAGCATTCTCCTCCAACACCCGAATATTTTCGATGCAGGTGTAGCAGGTCTCCCGGATGATGATGCAGGTGAGCTCCCGGCAGCAGTAGTAGTACTCGAGCACGGTAAGACGATGACGGAGAAGGAGATTGTAGATTATGTAGCAAGCCAAGTAACGACGGCAAAGAAGCTCAGAGGTGGTGTAGTATTCGTAGATGAGGTACCGAAGGGTCTCACGGGTAAGCTCGATGCAAGAAAGATTAGAGAGATTCTCATTAAGGCAAA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L38 nLUC mRNA | ACGCCGGAGGGTGATGATAAGCCGGGTGCAGTAGGTAAGGTAGTACCGTTCTTCGAGGCAAAGGTAGTAGATCTCGATACGGGTAAGACGCTCGGTGTAAATCAAAGAGGTGAGCTCTGCGTAAGAGGTCCGATGATTATGAGCGGTTATGTAAATAATCCGGAGGCAACGAATGCACTCATTGATAAGGATGGTTGGCTCCACAGCGGTGATATTGCATATTGGGATGAGGATGAGCACTTCTTCATTGTAGATAGACTCAAGAGCCTCATTAAGTATAAGGGTTATCAAGTAGCACCG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L38 nLUC mRNA | TCAGAGTAGTACTCATGTATAGATTCGAGGAGGAGCTCTTCCTCAGAAGCCTCCAAGATTATAAGATTCAAAGCGCACTCCTCGTACCGACGCTCTTCAGCTTCTTCGCAAAGAGCACGCTCATTGATAAGTATGATCTCAGCAATCTCCACGAGATTGCAAGCGGTGGTGCACCGCTCAGCAAGGAGGTAGGTGAGGCAGTAGCAAAGAGATTCCACCTCCCGGGTATTAGACAAGGTTATGGTCTCACGGAGACGACGAGCGCAATTCTCATTACGCCGGAGGGTGATGATAAGCCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L38 nLUC mRNA | AACGAGCCACCTCCCGCCGGGTTTCAATGAGTATGATTTCGTACCGGAGAGCTTCGATAGAGATAAGACGATTGCACTCATTATGAATAGCAGCGGTAGCACGGGTCTCCCGAAGGGTGTAGCACTCCCGCACAGAACGGCATGCGTAAGATTCAGCCACGCAAGAGATCCGATTTTCGGTAATCAAATTATTCCGGATACGGCAATTCTCAGCGTAGTACCGTTCCACCACGGTTTCGGTATGTTCACGACGCTCGGTTATCTCATTTGCGGTTTCAGAGTAGTACTCATGTATAGATT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L38 nLUC mRNA | AGAATTGTAGTATGCAGCGAGAATAGCCTCCAATTCTTCATGCCGGTACTCGGTGCACTCTTCATTGGTGTAGCAGTAGCACCGGCAAATGATATTTATAATGAGAGAGAGCTCCTCAATAGCATGGGTATTAGCCAACCGACGGTAGTATTCGTAAGCAAGAAGGGTCTCCAAAAGATTCTCAATGTACAAAAGAAGCTCCCGATTATTCAAAAGATTATTATTATGGATAGCAAGACGGATTATCAAGGTTTCCAAAGCATGTATACGTTCGTAACGAGCCACCTCCCGCCGGGTTTC | [
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573,
574
] | mRNA | Mauger,2019 |
Mauger,2019 U_L38 nLUC mRNA | TTAGAGAGATTCTCATTAAGGCAAAGAAGGGTGGTAAGATTGCAGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L38 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGATGCAAAGAATATTAAGAAGGGTCCGGCACCGTTCTATCCGCTCGAGGATGGTACGGCAGGTGAGCAACTCCACAAGGCAATGAAGAGATATGCACTCGTACCGGGTACGATTGCATTCACGGATGCACACATTGAGGTAGATATTACGTATGCAGAGTATTTCGAGATGAGCGTAAGACTCGCAGAGGCAATGAAGAGATATGGTCTCAATACGAATCACAGAATTGTAGTATGCAGCGAGAATA | [
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290,
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292,
293,
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295,
296,
297,
298,
299
] | mRNA | Mauger,2019 |
Mauger,2019 U_L39 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGATGCCAAGAATATAAAGAAGGGCCCCGCCCCCTTCTACCCCTTAGAGGATGGCACTGCCGGCGAGCAATTACACAAGGCCATGAAGAGATACGCCTTAGTACCCGGCACTATAGCCTTCACTGATGCCCACATAGAGGTAGATATAACTTACGCCGAGTACTTCGAGATGAGTGTAAGATTAGCCGAGGCCATGAAGAGATACGGCTTAAATACTAATCACAGAATAGTAGTATGCAGTGAGAATA | [
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Mauger,2019 U_L39 nLUC mRNA | AGAATAGTAGTATGCAGTGAGAATAGTTTACAATTCTTCATGCCCGTATTAGGCGCCTTATTCATAGGCGTAGCCGTAGCCCCCGCCAATGATATATACAATGAGAGAGAGTTATTAAATAGTATGGGCATAAGTCAACCCACTGTAGTATTCGTAAGTAAGAAGGGCTTACAAAAGATATTAAATGTACAAAAGAAGTTACCCATAATACAAAAGATAATAATAATGGATAGTAAGACTGATTACCAAGGCTTCCAAAGTATGTACACTTTCGTAACTAGTCACTTACCCCCCGGCTTC | [
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Mauger,2019 U_L39 nLUC mRNA | AACTAGTCACTTACCCCCCGGCTTCAATGAGTACGATTTCGTACCCGAGAGTTTCGATAGAGATAAGACTATAGCCTTAATAATGAATAGTAGTGGCAGTACTGGCTTACCCAAGGGCGTAGCCTTACCCCACAGAACTGCCTGCGTAAGATTCAGTCACGCCAGAGATCCCATATTCGGCAATCAAATAATACCCGATACTGCCATATTAAGTGTAGTACCCTTCCACCACGGCTTCGGCATGTTCACTACTTTAGGCTACTTAATATGCGGCTTCAGAGTAGTATTAATGTACAGATT | [
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Mauger,2019 U_L39 nLUC mRNA | TCAGAGTAGTATTAATGTACAGATTCGAGGAGGAGTTATTCTTAAGAAGTTTACAAGATTACAAGATACAAAGTGCCTTATTAGTACCCACTTTATTCAGTTTCTTCGCCAAGAGTACTTTAATAGATAAGTACGATTTAAGTAATTTACACGAGATAGCCAGTGGCGGCGCCCCCTTAAGTAAGGAGGTAGGCGAGGCCGTAGCCAAGAGATTCCACTTACCCGGCATAAGACAAGGCTACGGCTTAACTGAGACTACTAGTGCCATATTAATAACTCCCGAGGGCGATGATAAGCCCG | [
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Mauger,2019 U_L39 nLUC mRNA | ACTCCCGAGGGCGATGATAAGCCCGGCGCCGTAGGCAAGGTAGTACCCTTCTTCGAGGCCAAGGTAGTAGATTTAGATACTGGCAAGACTTTAGGCGTAAATCAAAGAGGCGAGTTATGCGTAAGAGGCCCCATGATAATGAGTGGCTACGTAAATAATCCCGAGGCCACTAATGCCTTAATAGATAAGGATGGCTGGTTACACAGTGGCGATATAGCCTACTGGGATGAGGATGAGCACTTCTTCATAGTAGATAGATTAAAGAGTTTAATAAAGTACAAGGGCTACCAAGTAGCCCCC | [
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Mauger,2019 U_L39 nLUC mRNA | GTACAAGGGCTACCAAGTAGCCCCCGCCGAGTTAGAGAGTATATTATTACAACACCCCAATATATTCGATGCCGGCGTAGCCGGCTTACCCGATGATGATGCCGGCGAGTTACCCGCCGCCGTAGTAGTATTAGAGCACGGCAAGACTATGACTGAGAAGGAGATAGTAGATTACGTAGCCAGTCAAGTAACTACTGCCAAGAAGTTAAGAGGCGGCGTAGTATTCGTAGATGAGGTACCCAAGGGCTTAACTGGCAAGTTAGATGCCAGAAAGATAAGAGAGATATTAATAAAGGCCAA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L39 nLUC mRNA | TAAGAGAGATATTAATAAAGGCCAAGAAGGGCGGCAAGATAGCCGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCGAAAAATATCAAAAAAGGGCCGGCGCCGTTTTACCCGCTGGAGGACGGGACAGCGGGGGAGCAGCTGCATAAAGCGATGAAACGGTACGCGCTGGTACCGGGGACAATCGCGTTTACAGACGCGCATATCGAGGTAGACATCACATACGCGGAGTACTTTGAGATGAGCGTACGGCTGGCGGAGGCGATGAAACGGTACGGGCTGAATACAAATCATCGGATCGTAGTATGTAGCGAGAATA | [
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0,
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286,
287,
288,
289,
290,
291,
292,
293,
294,
295,
296,
297,
298,
299
] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | TCCGGGAGATCCTGATCAAAGCGAAAAAAGGGGGGAAAATCGCGGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | ATACAAAGGGTACCAGGTAGCGCCGGCGGAGCTGGAGAGCATCCTGCTGCAGCATCCGAATATCTTTGACGCGGGGGTAGCGGGGCTGCCGGACGACGACGCGGGGGAGCTGCCGGCGGCGGTAGTAGTACTGGAGCATGGGAAAACAATGACAGAGAAAGAGATCGTAGACTACGTAGCGAGCCAGGTAACAACAGCGAAAAAACTGCGGGGGGGGGTAGTATTTGTAGACGAGGTACCGAAAGGGCTGACAGGGAAACTGGACGCGCGGAAAATCCGGGAGATCCTGATCAAAGCGAA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | ACACCGGAGGGGGACGACAAACCGGGGGCGGTAGGGAAAGTAGTACCGTTTTTTGAGGCGAAAGTAGTAGACCTGGACACAGGGAAAACACTGGGGGTAAATCAGCGGGGGGAGCTGTGTGTACGGGGGCCGATGATCATGAGCGGGTACGTAAATAATCCGGAGGCGACAAATGCGCTGATCGACAAAGACGGGTGGCTGCATAGCGGGGACATCGCGTACTGGGACGAGGACGAGCATTTTTTTATCGTAGACCGGCTGAAAAGCCTGATCAAATACAAAGGGTACCAGGTAGCGCCG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | CGGATCGTAGTATGTAGCGAGAATAGCCTGCAGTTTTTTATGCCGGTACTGGGGGCGCTGTTTATCGGGGTAGCGGTAGCGCCGGCGAATGACATCTACAATGAGCGGGAGCTGCTGAATAGCATGGGGATCAGCCAGCCGACAGTAGTATTTGTAAGCAAAAAAGGGCTGCAGAAAATCCTGAATGTACAGAAAAAACTGCCGATCATCCAGAAAATCATCATCATGGACAGCAAAACAGACTACCAGGGGTTTCAGAGCATGTACACATTTGTAACAAGCCATCTGCCGCCGGGGTTT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | TTCGGGTAGTACTGATGTACCGGTTTGAGGAGGAGCTGTTTCTGCGGAGCCTGCAGGACTACAAAATCCAGAGCGCGCTGCTGGTACCGACACTGTTTAGCTTTTTTGCGAAAAGCACACTGATCGACAAATACGACCTGAGCAATCTGCATGAGATCGCGAGCGGGGGGGCGCCGCTGAGCAAAGAGGTAGGGGAGGCGGTAGCGAAACGGTTTCATCTGCCGGGGATCCGGCAGGGGTACGGGCTGACAGAGACAACAAGCGCGATCCTGATCACACCGGAGGGGGACGACAAACCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L4 nLUC mRNA | AACAAGCCATCTGCCGCCGGGGTTTAATGAGTACGACTTTGTACCGGAGAGCTTTGACCGGGACAAAACAATCGCGCTGATCATGAATAGCAGCGGGAGCACAGGGCTGCCGAAAGGGGTAGCGCTGCCGCATCGGACAGCGTGTGTACGGTTTAGCCATGCGCGGGACCCGATCTTTGGGAATCAGATCATCCCGGACACAGCGATCCTGAGCGTAGTACCGTTTCATCATGGGTTTGGGATGTTTACAACACTGGGGTACCTGATCTGTGGGTTTCGGGTAGTACTGATGTACCGGTT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | ACCCCCGAAGGGGATGATAAGCCCGGGGCCGTCGGGAAGGTCGTCCCCTTTTTTGAAGCCAAGGTCGTCGATCTCGATACCGGGAAGACCCTCGGGGTCAACCAGAGAGGGGAACTCTGTGTCAGAGGGCCCATGATCATGAGCGGGTACGTCAACAACCCCGAAGCCACCAACGCCCTCATCGATAAGGATGGGTGGCTCCACAGCGGGGATATCGCCTACTGGGATGAAGATGAACACTTTTTTATCGTCGATAGACTCAAGAGCCTCATCAAGTACAAGGGGTACCAGGTCGCCCCC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAAGATGCCAAGAACATCAAGAAGGGGCCCGCCCCCTTTTACCCCCTCGAAGATGGGACCGCCGGGGAACAGCTCCACAAGGCCATGAAGAGATACGCCCTCGTCCCCGGGACCATCGCCTTTACCGATGCCCACATCGAAGTCGATATCACCTACGCCGAATACTTTGAAATGAGCGTCAGACTCGCCGAAGCCATGAAGAGATACGGGCTCAACACCAACCACAGAATCGTCGTCTGTAGCGAAAACA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | GTACAAGGGGTACCAGGTCGCCCCCGCCGAACTCGAAAGCATCCTCCTCCAGCACCCCAACATCTTTGATGCCGGGGTCGCCGGGCTCCCCGATGATGATGCCGGGGAACTCCCCGCCGCCGTCGTCGTCCTCGAACACGGGAAGACCATGACCGAAAAGGAAATCGTCGATTACGTCGCCAGCCAGGTCACCACCGCCAAGAAGCTCAGAGGGGGGGTCGTCTTTGTCGATGAAGTCCCCAAGGGGCTCACCGGGAAGCTCGATGCCAGAAAGATCAGAGAAATCCTCATCAAGGCCAA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | TTAGAGTCGTCCTCATGTACAGATTTGAAGAAGAACTCTTTCTCAGAAGCCTCCAGGATTACAAGATCCAGAGCGCCCTCCTCGTCCCCACCCTCTTTAGCTTTTTTGCCAAGAGCACCCTCATCGATAAGTACGATCTCAGCAACCTCCACGAAATCGCCAGCGGGGGGGCCCCCCTCAGCAAGGAAGTCGGGGAAGCCGTCGCCAAGAGATTTCACCTCCCCGGGATCAGACAGGGGTACGGGCTCACCGAAACCACCAGCGCCATCCTCATCACCCCCGAAGGGGATGATAAGCCCG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | CACCAGCCACCTCCCCCCCGGGTTTAACGAATACGATTTTGTCCCCGAAAGCTTTGATAGAGATAAGACCATCGCCCTCATCATGAACAGCAGCGGGAGCACCGGGCTCCCCAAGGGGGTCGCCCTCCCCCACAGAACCGCCTGTGTCAGATTTAGCCACGCCAGAGATCCCATCTTTGGGAACCAGATCATCCCCGATACCGCCATCCTCAGCGTCGTCCCCTTTCACCACGGGTTTGGGATGTTTACCACCCTCGGGTACCTCATCTGTGGGTTTAGAGTCGTCCTCATGTACAGATT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | AGAATCGTCGTCTGTAGCGAAAACAGCCTCCAGTTTTTTATGCCCGTCCTCGGGGCCCTCTTTATCGGGGTCGCCGTCGCCCCCGCCAACGATATCTACAACGAAAGAGAACTCCTCAACAGCATGGGGATCAGCCAGCCCACCGTCGTCTTTGTCAGCAAGAAGGGGCTCCAGAAGATCCTCAACGTCCAGAAGAAGCTCCCCATCATCCAGAAGATCATCATCATGGATAGCAAGACCGATTACCAGGGGTTTCAGAGCATGTACACCTTTGTCACCAGCCACCTCCCCCCCGGGTTT | [
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573,
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L5 nLUC mRNA | TCAGAGAAATCCTCATCAAGGCCAAGAAGGGGGGGAAGATCGCCGTCTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | CACTAGCCACCTACCGCCGGGCTTCAATGAGTATGACTTCGTCCCGGAGAGCTTCGACCGAGACAAAACTATAGCACTAATAATGAATAGCAGCGGCAGCACTGGCCTACCGAAAGGCGTCGCACTACCGCACCGAACTGCATGTGTCCGATTCAGCCACGCACGAGACCCGATATTCGGCAATCAAATAATACCGGACACTGCAATACTAAGCGTCGTCCCGTTCCACCACGGCTTCGGCATGTTCACTACTCTAGGCTATCTAATATGTGGCTTCCGAGTCGTCCTAATGTATCGATT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | TCCGAGTCGTCCTAATGTATCGATTCGAGGAGGAGCTATTCCTACGAAGCCTACAAGACTATAAAATACAAAGCGCACTACTAGTCCCGACTCTATTCAGCTTCTTCGCAAAAAGCACTCTAATAGACAAATATGACCTAAGCAATCTACACGAGATAGCAAGCGGCGGCGCACCGCTAAGCAAAGAGGTCGGCGAGGCAGTCGCAAAACGATTCCACCTACCGGGCATACGACAAGGCTATGGCCTAACTGAGACTACTAGCGCAATACTAATAACTCCGGAGGGCGACGACAAACCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | ACTCCGGAGGGCGACGACAAACCGGGCGCAGTCGGCAAAGTCGTCCCGTTCTTCGAGGCAAAAGTCGTCGACCTAGACACTGGCAAAACTCTAGGCGTCAATCAACGAGGCGAGCTATGTGTCCGAGGCCCGATGATAATGAGCGGCTATGTCAATAATCCGGAGGCAACTAATGCACTAATAGACAAAGACGGCTGGCTACACAGCGGCGACATAGCATATTGGGACGAGGACGAGCACTTCTTCATAGTCGACCGACTAAAAAGCCTAATAAAATATAAAGGCTATCAAGTCGCACCG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | ATATAAAGGCTATCAAGTCGCACCGGCAGAGCTAGAGAGCATACTACTACAACACCCGAATATATTCGACGCAGGCGTCGCAGGCCTACCGGACGACGACGCAGGCGAGCTACCGGCAGCAGTCGTCGTCCTAGAGCACGGCAAAACTATGACTGAGAAAGAGATAGTCGACTATGTCGCAAGCCAAGTCACTACTGCAAAAAAACTACGAGGCGGCGTCGTCTTCGTCGACGAGGTCCCGAAAGGCCTAACTGGCAAACTAGACGCACGAAAAATACGAGAGATACTAATAAAAGCAAA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | TACGAGAGATACTAATAAAAGCAAAAAAAGGCGGCAAAATAGCAGTCTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCAAAAAATATAAAAAAAGGCCCGGCACCGTTCTATCCGCTAGAGGACGGCACTGCAGGCGAGCAACTACACAAAGCAATGAAACGATATGCACTAGTCCCGGGCACTATAGCATTCACTGACGCACACATAGAGGTCGACATAACTTATGCAGAGTATTTCGAGATGAGCGTCCGACTAGCAGAGGCAATGAAACGATATGGCCTAAATACTAATCACCGAATAGTCGTCTGTAGCGAGAATA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L6 nLUC mRNA | CGAATAGTCGTCTGTAGCGAGAATAGCCTACAATTCTTCATGCCGGTCCTAGGCGCACTATTCATAGGCGTCGCAGTCGCACCGGCAAATGACATATATAATGAGCGAGAGCTACTAAATAGCATGGGCATAAGCCAACCGACTGTCGTCTTCGTCAGCAAAAAAGGCCTACAAAAAATACTAAATGTCCAAAAAAAACTACCGATAATACAAAAAATAATAATAATGGACAGCAAAACTGACTATCAAGGCTTCCAAAGCATGTATACTTTCGTCACTAGCCACCTACCGCCGGGCTTC | [
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Mauger,2019 U_L7 nLUC mRNA | CGTATCGTGGTGTGTTCGGAAAACTCGCTGCAGTTCTTCATGCCAGTGCTGGGCGCCCTGTTCATCGGCGTGGCCGTGGCCCCAGCCAACGACATCTATAACGAACGTGAACTGCTGAACTCGATGGGCATCTCGCAGCCAACGGTGGTGTTCGTGTCGAAAAAAGGCCTGCAGAAAATCCTGAACGTGCAGAAAAAACTGCCAATCATCCAGAAAATCATCATCATGGACTCGAAAACGGACTATCAGGGCTTCCAGTCGATGTATACGTTCGTGACGTCGCACCTGCCACCAGGCTTC | [
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Mauger,2019 U_L7 nLUC mRNA | GACGTCGCACCTGCCACCAGGCTTCAACGAATATGACTTCGTGCCAGAATCGTTCGACCGTGACAAAACGATCGCCCTGATCATGAACTCGTCGGGCTCGACGGGCCTGCCAAAAGGCGTGGCCCTGCCACACCGTACGGCCTGTGTGCGTTTCTCGCACGCCCGTGACCCAATCTTCGGCAACCAGATCATCCCAGACACGGCCATCCTGTCGGTGGTGCCATTCCACCACGGCTTCGGCATGTTCACGACGCTGGGCTATCTGATCTGTGGCTTCCGTGTGGTGCTGATGTATCGTTT | [
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Mauger,2019 U_L7 nLUC mRNA | TCCGTGTGGTGCTGATGTATCGTTTCGAAGAAGAACTGTTCCTGCGTTCGCTGCAGGACTATAAAATCCAGTCGGCCCTGCTGGTGCCAACGCTGTTCTCGTTCTTCGCCAAATCGACGCTGATCGACAAATATGACCTGTCGAACCTGCACGAAATCGCCTCGGGCGGCGCCCCACTGTCGAAAGAAGTGGGCGAAGCCGTGGCCAAACGTTTCCACCTGCCAGGCATCCGTCAGGGCTATGGCCTGACGGAAACGACGTCGGCCATCCTGATCACGCCAGAAGGCGACGACAAACCAG | [
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1113,
1114,
1115,
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1117,
1118,
1119,
1120,
1121,
1122,
1123,
1124
] | mRNA | Mauger,2019 |
Mauger,2019 U_L7 nLUC mRNA | ACGCCAGAAGGCGACGACAAACCAGGCGCCGTGGGCAAAGTGGTGCCATTCTTCGAAGCCAAAGTGGTGGACCTGGACACGGGCAAAACGCTGGGCGTGAACCAGCGTGGCGAACTGTGTGTGCGTGGCCCAATGATCATGTCGGGCTATGTGAACAACCCAGAAGCCACGAACGCCCTGATCGACAAAGACGGCTGGCTGCACTCGGGCGACATCGCCTATTGGGACGAAGACGAACACTTCTTCATCGTGGACCGTCTGAAATCGCTGATCAAATATAAAGGCTATCAGGTGGCCCCA | [
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1390,
1391,
1392,
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1394,
1395,
1396,
1397,
1398,
1399
] | mRNA | Mauger,2019 |
Mauger,2019 U_L7 nLUC mRNA | ATATAAAGGCTATCAGGTGGCCCCAGCCGAACTGGAATCGATCCTGCTGCAGCACCCAAACATCTTCGACGCCGGCGTGGCCGGCCTGCCAGACGACGACGCCGGCGAACTGCCAGCCGCCGTGGTGGTGCTGGAACACGGCAAAACGATGACGGAAAAAGAAATCGTGGACTATGTGGCCTCGCAGGTGACGACGGCCAAAAAACTGCGTGGCGGCGTGGTGTTCGTGGACGAAGTGCCAAAAGGCCTGACGGGCAAACTGGACGCCCGTAAAATCCGTGAAATCCTGATCAAAGCCAA | [
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1663,
1664,
1665,
1666,
1667,
1668,
1669,
1670,
1671,
1672,
1673,
1674
] | mRNA | Mauger,2019 |
Mauger,2019 U_L7 nLUC mRNA | TCCGTGAAATCCTGATCAAAGCCAAAAAAGGCGGCAAAATCGCCGTGTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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null,
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null,
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null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
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1803,
1804,
1805,
1806,
1807,
1808,
1809,
1810,
1811,
1812,
1813,
1814
] | mRNA | Mauger,2019 |
Mauger,2019 U_L7 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAAGACGCCAAAAACATCAAAAAAGGCCCAGCCCCATTCTATCCACTGGAAGACGGCACGGCCGGCGAACAGCTGCACAAAGCCATGAAACGTTATGCCCTGGTGCCAGGCACGATCGCCTTCACGGACGCCCACATCGAAGTGGACATCACGTATGCCGAATATTTCGAAATGTCGGTGCGTCTGGCCGAAGCCATGAAACGTTATGGCCTGAACACGAACCACCGTATCGTGGTGTGTTCGGAAAACT | [
null,
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null,
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203,
204,
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212,
213,
214,
215,
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217,
218,
219,
220,
221,
222,
223,
224,
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226,
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231,
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233,
234,
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240,
241,
242,
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248,
249,
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251,
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253,
254,
255,
256,
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261,
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268,
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270,
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273,
274,
275,
276,
277,
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280,
281,
282,
283,
284,
285,
286,
287,
288,
289,
290,
291,
292,
293,
294,
295,
296,
297,
298,
299
] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | ACGCCCGAAGGTGACGACAAGCCCGGTGCGGTGGGTAAGGTGGTGCCCTTCTTCGAAGCGAAGGTGGTGGACCTCGACACGGGTAAGACGCTCGGTGTGAACCAACGGGGTGAACTCTGCGTGCGGGGTCCCATGATAATGTCCGGTTACGTGAACAACCCCGAAGCGACGAACGCGCTCATAGACAAGGACGGTTGGCTCCACTCCGGTGACATAGCGTACTGGGACGAAGACGAACACTTCTTCATAGTGGACCGGCTCAAGTCCCTCATAAAGTACAAGGGTTACCAAGTGGCGCCC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | TCCGGGTGGTGCTCATGTACCGGTTCGAAGAAGAACTCTTCCTCCGGTCCCTCCAAGACTACAAGATACAATCCGCGCTCCTCGTGCCCACGCTCTTCTCCTTCTTCGCGAAGTCCACGCTCATAGACAAGTACGACCTCTCCAACCTCCACGAAATAGCGTCCGGTGGTGCGCCCCTCTCCAAGGAAGTGGGTGAAGCGGTGGCGAAGCGGTTCCACCTCCCCGGTATACGGCAAGGTTACGGTCTCACGGAAACGACGTCCGCGATACTCATAACGCCCGAAGGTGACGACAAGCCCG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | GACGTCCCACCTCCCCCCCGGTTTCAACGAATACGACTTCGTGCCCGAATCCTTCGACCGGGACAAGACGATAGCGCTCATAATGAACTCCTCCGGTTCCACGGGTCTCCCCAAGGGTGTGGCGCTCCCCCACCGGACGGCGTGCGTGCGGTTCTCCCACGCGCGGGACCCCATATTCGGTAACCAAATAATACCCGACACGGCGATACTCTCCGTGGTGCCCTTCCACCACGGTTTCGGTATGTTCACGACGCTCGGTTACCTCATATGCGGTTTCCGGGTGGTGCTCATGTACCGGTT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | CGGATAGTGGTGTGCTCCGAAAACTCCCTCCAATTCTTCATGCCCGTGCTCGGTGCGCTCTTCATAGGTGTGGCGGTGGCGCCCGCGAACGACATATACAACGAACGGGAACTCCTCAACTCCATGGGTATATCCCAACCCACGGTGGTGTTCGTGTCCAAGAAGGGTCTCCAAAAGATACTCAACGTGCAAAAGAAGCTCCCCATAATACAAAAGATAATAATAATGGACTCCAAGACGGACTACCAAGGTTTCCAATCCATGTACACGTTCGTGACGTCCCACCTCCCCCCCGGTTTC | [
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572,
573,
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAAGACGCGAAGAACATAAAGAAGGGTCCCGCGCCCTTCTACCCCCTCGAAGACGGTACGGCGGGTGAACAACTCCACAAGGCGATGAAGCGGTACGCGCTCGTGCCCGGTACGATAGCGTTCACGGACGCGCACATAGAAGTGGACATAACGTACGCGGAATACTTCGAAATGTCCGTGCGGCTCGCGGAAGCGATGAAGCGGTACGGTCTCAACACGAACCACCGGATAGTGGTGTGCTCCGAAAACT | [
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297,
298,
299
] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | GTACAAGGGTTACCAAGTGGCGCCCGCGGAACTCGAATCCATACTCCTCCAACACCCCAACATATTCGACGCGGGTGTGGCGGGTCTCCCCGACGACGACGCGGGTGAACTCCCCGCGGCGGTGGTGGTGCTCGAACACGGTAAGACGATGACGGAAAAGGAAATAGTGGACTACGTGGCGTCCCAAGTGACGACGGCGAAGAAGCTCCGGGGTGGTGTGGTGTTCGTGGACGAAGTGCCCAAGGGTCTCACGGGTAAGCTCGACGCGCGGAAGATACGGGAAATACTCATAAAGGCGAA | [
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1674
] | mRNA | Mauger,2019 |
Mauger,2019 U_L8 nLUC mRNA | TACGGGAAATACTCATAAAGGCGAAGAAGGGTGGTAAGATAGCGGTGTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | TCAGGGAGATCTTAATCAAGGCGAAGAAGGGGGGGAAGATCGCGGTCTGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | GTACAAGGGGTACCAAGTCGCGCCGGCGGAGTTAGAGAGCATCTTATTACAACATCCGAATATCTTCGACGCGGGGGTCGCGGGGTTACCGGACGACGACGCGGGGGAGTTACCGGCGGCGGTCGTCGTCTTAGAGCATGGGAAGACAATGACAGAGAAGGAGATCGTCGACTACGTCGCGAGCCAAGTCACAACAGCGAAGAAGTTAAGGGGGGGGGTCGTCTTCGTCGACGAGGTCCCGAAGGGGTTAACAGGGAAGTTAGACGCGAGGAAGATCAGGGAGATCTTAATCAAGGCGAA | [
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1672,
1673,
1674
] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | ACACCGGAGGGGGACGACAAGCCGGGGGCGGTCGGGAAGGTCGTCCCGTTCTTCGAGGCGAAGGTCGTCGACTTAGACACAGGGAAGACATTAGGGGTCAATCAAAGGGGGGAGTTATGCGTCAGGGGGCCGATGATCATGAGCGGGTACGTCAATAATCCGGAGGCGACAAATGCGTTAATCGACAAGGACGGGTGGTTACATAGCGGGGACATCGCGTACTGGGACGAGGACGAGCATTTCTTCATCGTCGACAGGTTAAAGAGCTTAATCAAGTACAAGGGGTACCAAGTCGCGCCG | [
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1398,
1399
] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | CACAAGCCATTTACCGCCGGGGTTCAATGAGTACGACTTCGTCCCGGAGAGCTTCGACAGGGACAAGACAATCGCGTTAATCATGAATAGCAGCGGGAGCACAGGGTTACCGAAGGGGGTCGCGTTACCGCATAGGACAGCGTGCGTCAGGTTCAGCCATGCGAGGGACCCGATCTTCGGGAATCAAATCATCCCGGACACAGCGATCTTAAGCGTCGTCCCGTTCCATCATGGGTTCGGGATGTTCACAACATTAGGGTACTTAATCTGCGGGTTCAGGGTCGTCTTAATGTACAGGTT | [
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838,
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840,
841,
842,
843,
844,
845,
846,
847,
848,
849
] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | AGGATCGTCGTCTGCAGCGAGAATAGCTTACAATTCTTCATGCCGGTCTTAGGGGCGTTATTCATCGGGGTCGCGGTCGCGCCGGCGAATGACATCTACAATGAGAGGGAGTTATTAAATAGCATGGGGATCAGCCAACCGACAGTCGTCTTCGTCAGCAAGAAGGGGTTACAAAAGATCTTAAATGTCCAAAAGAAGTTACCGATCATCCAAAAGATCATCATCATGGACAGCAAGACAGACTACCAAGGGTTCCAAAGCATGTACACATTCGTCACAAGCCATTTACCGCCGGGGTTC | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCGAAGAATATCAAGAAGGGGCCGGCGCCGTTCTACCCGTTAGAGGACGGGACAGCGGGGGAGCAATTACATAAGGCGATGAAGAGGTACGCGTTAGTCCCGGGGACAATCGCGTTCACAGACGCGCATATCGAGGTCGACATCACATACGCGGAGTACTTCGAGATGAGCGTCAGGTTAGCGGAGGCGATGAAGAGGTACGGGTTAAATACAAATCATAGGATCGTCGTCTGCAGCGAGAATA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L9 nLUC mRNA | TCAGGGTCGTCTTAATGTACAGGTTCGAGGAGGAGTTATTCTTAAGGAGCTTACAAGACTACAAGATCCAAAGCGCGTTATTAGTCCCGACATTATTCAGCTTCTTCGCGAAGAGCACATTAATCGACAAGTACGACTTAAGCAATTTACATGAGATCGCGAGCGGGGGGGCGCCGTTAAGCAAGGAGGTCGGGGAGGCGGTCGCGAAGAGGTTCCATTTACCGGGGATCAGGCAAGGGTACGGGTTAACAGAGACAACAAGCGCGATCTTAATCACACCGGAGGGGGACGACAAGCCGG | [
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995,
996,
997,
998,
999,
1000,
1001,
1002,
1003,
1004,
1005,
1006,
1007,
1008,
1009,
1010,
1011,
1012,
1013,
1014,
1015,
1016,
1017,
1018,
1019,
1020,
1021,
1022,
1023,
1024,
1025,
1026,
1027,
1028,
1029,
1030,
1031,
1032,
1033,
1034,
1035,
1036,
1037,
1038,
1039,
1040,
1041,
1042,
1043,
1044,
1045,
1046,
1047,
1048,
1049,
1050,
1051,
1052,
1053,
1054,
1055,
1056,
1057,
1058,
1059,
1060,
1061,
1062,
1063,
1064,
1065,
1066,
1067,
1068,
1069,
1070,
1071,
1072,
1073,
1074,
1075,
1076,
1077,
1078,
1079,
1080,
1081,
1082,
1083,
1084,
1085,
1086,
1087,
1088,
1089,
1090,
1091,
1092,
1093,
1094,
1095,
1096,
1097,
1098,
1099,
1100,
1101,
1102,
1103,
1104,
1105,
1106,
1107,
1108,
1109,
1110,
1111,
1112,
1113,
1114,
1115,
1116,
1117,
1118,
1119,
1120,
1121,
1122,
1123,
1124
] | mRNA | Mauger,2019 |
McGinnis, 2015 e. coli 30S in vivo subunits | CGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGC | [
0,
0.05,
0.51,
3.41,
0.08,
0.02,
0.01,
0,
0.01,
0.01,
0,
0.11,
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0.04,
0.15,
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0.07,
0.26,
0.34,
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0.2,
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0.01,
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0.06,
0.22,
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0.03,
0.53,
4.64,
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0,
0.01,
0.05,
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0.09,
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0.03,
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0.39,
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0.28,
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0.2,
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0,
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0.14,
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0,
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0.02,
0.13,
0.17,
1.22,
2.23,
0.07,
0,
0.04,
0.03,
0.02,
0.01,
0.22,
0.04,
0.32,
5.83,
1.05,
0,
0,
0,
0,
0.01,
0,
0.02,
0.05,
0.02,
0.03,
0.02,
0.03,
0.02,
0.08,
0.05,
0.01,
0.05,
0.12,
0.01,
0.01,
0.01,
0,
0.02,
0.07,
0.36,
0,
0.04,
0.04,
0.05,
0.03,
0.03,
0,
0,
0.02,
0,
0,
0,
0.01,
0.01,
0.02,
0.03,
0.19,
0.47000000000000003,
6.28,
0.17,
0,
0,
0.01,
0,
0.01,
0,
0,
0,
0.11,
0.65,
0.07,
0.02,
0.06,
0,
0.07,
0.8200000000000001,
2.47,
0.12,
0.03,
0.01,
0.01,
0,
0,
0.019,
0.017,
0.025,
0.039,
0.019,
0.047,
0.108,
0.056,
0,
0,
0,
0,
0.036000000000000004,
0.094,
0.105,
0.05,
0.15,
0.031,
0.075,
0,
0,
0,
0,
0,
0.075,
0.247,
0.352,
0.18,
0.43,
0.08,
0,
0.519,
0.17500000000000002,
0.197,
0.006,
0,
0,
0.275,
1.646,
6.797,
3.716,
1.016,
0.53,
0.128,
0.022,
0,
0,
0,
0.017,
0.022,
0,
0,
0,
0.036000000000000004,
0.022,
0.053,
0.008,
0,
0,
0.158,
0.042,
0.047,
0.014,
0,
0,
0.08600000000000001,
0.125,
0.366,
0.244,
0.28300000000000003,
0.253,
0.097,
1.146,
0.17500000000000002,
0.033,
0.044,
0,
0.022,
0.155,
0.186,
0.25,
0.108,
0.008,
0.05
] | [
275,
276,
277,
278,
279,
280,
281,
282,
283,
284,
285,
286,
287,
288,
289,
290,
291,
292,
293,
294,
295,
296,
297,
298,
299,
300,
301,
302,
303,
304,
305,
306,
307,
308,
309,
310,
311,
312,
313,
314,
315,
316,
317,
318,
319,
320,
321,
322,
323,
324,
325,
326,
327,
328,
329,
330,
331,
332,
333,
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335,
336,
337,
338,
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342,
343,
344,
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348,
349,
350,
351,
352,
353,
354,
355,
356,
357,
358,
359,
360,
361,
362,
363,
364,
365,
366,
367,
368,
369,
370,
371,
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375,
376,
377,
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379,
380,
381,
382,
383,
384,
385,
386,
387,
388,
389,
390,
391,
392,
393,
394,
395,
396,
397,
398,
399,
400,
401,
402,
403,
404,
405,
406,
407,
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409,
410,
411,
412,
413,
414,
415,
416,
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418,
419,
420,
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422,
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425,
426,
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430,
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434,
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454,
455,
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457,
458,
459,
460,
461,
462,
463,
464,
465,
466,
467,
468,
469,
470,
471,
472,
473,
474,
475,
476,
477,
478,
479,
480,
481,
482,
483,
484,
485,
486,
487,
488,
489,
490,
491,
492,
493,
494,
495,
496,
497,
498,
499,
500,
501,
502,
503,
504,
505,
506,
507,
508,
509,
510,
511,
512,
513,
514,
515,
516,
517,
518,
519,
520,
521,
522,
523,
524,
525,
526,
527,
528,
529,
530,
531,
532,
533,
534,
535,
536,
537,
538,
539,
540,
541,
542,
543,
544,
545,
546,
547,
548,
549,
550,
551,
552,
553,
554,
555,
556,
557,
558,
559,
560,
561,
562,
563,
564,
565,
566,
567,
568,
569,
570,
571,
572,
573,
574
] | rRNA | McGinnis, 2015, rRNA in vivo |
McGinnis, 2015 e. coli 30S in vivo subunits | ACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA | [
0.068,
0.47200000000000003,
0.834,
0.068,
0.513,
0.424,
0.15,
0.027,
0,
0,
0,
0,
0.007,
0.007,
0.643,
0.26,
1.299,
0.492,
0.889,
0.014,
0.075,
0.39,
0.6910000000000001,
0.759,
0.26,
0.007,
0.075,
0.185,
0.13,
0.109,
0.048,
0,
0.014,
0.021,
0.068,
0.034,
0.062,
0.28700000000000003,
0.20500000000000002,
0.027,
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0.041,
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0,
0,
0.007,
0.014,
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0,
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0,
0.301,
0.978,
1.114,
1.067,
0.089,
0.718,
0.185,
0.157,
0.13,
0.027,
0.062,
0.14400000000000002,
0.328,
2.468,
0.13,
0,
0,
0.20500000000000002,
0.403,
0.273,
0,
0.10300000000000001,
0.157,
0.055,
1.114,
0.20500000000000002,
0.007,
0.007,
0.13,
0,
0,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
1375,
1376,
1377,
1378,
1379,
1380,
1381,
1382,
1383,
1384,
1385,
1386,
1387,
1388,
1389,
1390,
1391,
1392,
1393,
1394,
1395,
1396,
1397,
1398,
1399,
1400,
1401,
1402,
1403,
1404,
1405,
1406,
1407,
1408,
1409,
1410,
1411,
1412,
1413,
1414,
1415,
1416,
1417,
1418,
1419,
1420,
1421,
1422,
1423,
1424,
1425,
1426,
1427,
1428,
1429,
1430,
1431,
1432,
1433,
1434,
1435,
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1438,
1439,
1440,
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1442,
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1446,
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1449,
1450,
1451,
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1453,
1454,
1455,
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1458,
1459,
1460,
1461,
1462,
1463,
1464,
1465,
1466,
1467,
1468,
1469,
1470,
1471,
1472,
1473,
1474,
1475,
1476,
1477,
1478,
1479,
1480,
1481,
1482,
1483,
1484,
1485,
1486,
1487,
1488,
1489,
1490,
1491,
1492,
1493,
1494,
1495,
1496,
1497,
1498,
1499,
1500,
1501,
1502,
1503,
1504,
1505,
1506,
1507,
1508,
1509,
1510,
1511,
1512,
1513,
1514,
1515,
1516,
1517,
1518,
1519,
1520,
1521,
1522,
1523,
1524,
1525,
1526,
1527,
1528,
1529,
1530,
1531,
1532,
1533,
1534,
1535,
1536,
1537,
1538,
1539,
1540
] | rRNA | McGinnis, 2015, rRNA in vivo |
McGinnis, 2015 e. coli 30S in vivo subunits | ACGAGCGCAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCG | [
0.376,
0.027,
0.007,
0.014,
0.007,
0.082,
0.465,
0.451,
0.485,
0.8200000000000001,
0.841,
0.075,
0.021,
0.321,
0.28700000000000003,
0.232,
0.13,
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0,
0,
0,
0,
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0.123,
0.704,
1.86,
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0,
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0,
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0,
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0.116,
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2.489,
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0.191,
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0.732,
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0,
0.007,
0.068,
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0.109,
1.169,
1.121,
0.308,
0.10300000000000001,
0.089,
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0.048,
0.321,
1.771,
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0,
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0.021,
0.007,
0,
0,
0,
0.014,
0,
0.034,
0.116,
1.354,
0,
0.055,
0.109,
0.20500000000000002,
0.109,
0.007,
0,
0,
0,
0.014,
0.062,
0.048,
0.14400000000000002,
0.007,
0,
0,
0,
0,
0.014,
0.021,
0.055,
0.041,
0.007,
0,
0,
0,
0.027,
0.185,
2.106,
5.6,
0.711,
0.13,
0.041,
0.014,
0,
0.014,
0.041,
0.096,
0.075,
0.027,
0,
0,
0,
0,
0,
0,
0.014,
0.007,
0.062,
0.403,
2.728,
0.164,
0.13,
0.185,
0.014,
0.007,
0.014,
0.109,
0.178,
0.014,
0,
0.007,
0,
0,
0.014,
0.027,
0.041,
0.164,
1.135,
5.135,
7.172,
1.012,
0.171,
0.055,
0.014,
0,
0,
0,
0,
0,
0.007,
0,
0,
0,
0,
0,
0.027,
0.027,
0.027,
0.109,
0.055,
0.062,
0.089,
0.021,
0.007,
0,
0,
0.007,
0.007,
0,
0,
0,
0.007,
0,
0.014,
0.007,
0.075,
0.595,
3.049,
0.465,
0.226,
0.547,
0.034,
0,
0,
0,
0.068,
0.321,
0.034,
0,
0.007,
0,
0,
0,
0,
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0,
0,
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0.014,
0.089,
0.636,
0.089,
0.041,
0.089,
0.027,
0.075,
0,
0,
0,
0,
0.048,
0,
0,
0,
0,
0,
0,
0.068,
0.47200000000000003,
0.834,
0.068,
0.513,
0.424,
0.15,
0.027,
0,
0,
0,
0,
0.007,
0.007,
0.643,
0.26,
1.299,
0.492,
0.889,
0.014,
0.075,
0.39,
0.6910000000000001,
0.759,
0.26
] | [
1100,
1101,
1102,
1103,
1104,
1105,
1106,
1107,
1108,
1109,
1110,
1111,
1112,
1113,
1114,
1115,
1116,
1117,
1118,
1119,
1120,
1121,
1122,
1123,
1124,
1125,
1126,
1127,
1128,
1129,
1130,
1131,
1132,
1133,
1134,
1135,
1136,
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1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174,
1175,
1176,
1177,
1178,
1179,
1180,
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1182,
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1184,
1185,
1186,
1187,
1188,
1189,
1190,
1191,
1192,
1193,
1194,
1195,
1196,
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1198,
1199,
1200,
1201,
1202,
1203,
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1206,
1207,
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1209,
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1212,
1213,
1214,
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1220,
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1224,
1225,
1226,
1227,
1228,
1229,
1230,
1231,
1232,
1233,
1234,
1235,
1236,
1237,
1238,
1239,
1240,
1241,
1242,
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1244,
1245,
1246,
1247,
1248,
1249,
1250,
1251,
1252,
1253,
1254,
1255,
1256,
1257,
1258,
1259,
1260,
1261,
1262,
1263,
1264,
1265,
1266,
1267,
1268,
1269,
1270,
1271,
1272,
1273,
1274,
1275,
1276,
1277,
1278,
1279,
1280,
1281,
1282,
1283,
1284,
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1397,
1398,
1399
] | rRNA | McGinnis, 2015, rRNA in vivo |
McGinnis, 2015 e. coli 30S in vivo subunits | TTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTT | [
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1120,
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1122,
1123,
1124
] | rRNA | McGinnis, 2015, rRNA in vivo |
McGinnis, 2015 e. coli 30S in vivo subunits | TAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTG | [
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838,
839,
840,
841,
842,
843,
844,
845,
846,
847,
848,
849
] | rRNA | McGinnis, 2015, rRNA in vivo |
McGinnis, 2015 e. coli 30S in vivo subunits | AAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG | [
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] | rRNA | McGinnis, 2015, rRNA in vivo |
Rangan, 2021 SARS-CoV-2 5' UTR in vitro | TTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCC | [
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] | SARS-CoV-2_gRNA | SARS-CoV-2 5' UTRs |
Rangan, 2021 SARS-CoV-2 5' UTR in vitro | ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAAC | [
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] | SARS-CoV-2_gRNA | SARS-CoV-2 5' UTRs |
Rice,2014 structured RNAs SHAPE(1M6) CE | GUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAG | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | GACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAGTTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCCAATAGGGAAACTAAATTAGGAAAAGCAGGATATGTAACTGACAGAGGAAGACAAAAAGTTGTCCCCCTAACGGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTGACAGACTCACAATATGC | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AAAGAACCGGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAAGGGTGCCCACACTAATGATGTGAAACAATTAACAGAGGCAGTACAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAATTACCCATACAAAAGGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGG | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAGGACAGCTGGACTGTCAATGACATACAGAAATTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAGGCAATTATGTAAACTTCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCGGTACATGGAGTGTATT | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | TACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGTGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTCATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATT | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | GAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGATTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAACAGAAAAAATCAGTAACAGTACTGGATGTGGGCGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATA | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTG | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | CTTCCCACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAGCGACCCCTCGTCACAATAAAGATAGGGGGGCAATTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGG | [
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Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | ATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGATTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAAGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGGAGCGACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGA | [
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Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | TCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAAATCTATAAAA | [
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Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AGAAGAACTTAGATCATTATATAATACAATAGCAGTCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCCTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTT | [
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Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAACAATATAAACTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTTTTAGAGACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAAT | [
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Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTCAAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAAGCCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCC | [
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Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | ACATAGTGACAGACTCACAATATGCATTGGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTGGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTACCACCTGTAGTAGCAA | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | GACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATCCAGCTACCATAATGATACAGAAAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAA | [
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] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGT | [
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8562,
8563,
8564,
8565,
8566,
8567,
8568,
8569,
8570,
8571,
8572,
8573,
8574,
8575,
8576,
8577,
8578,
8579,
8580,
8581,
8582,
8583,
8584,
8585,
8586,
8587,
8588,
8589,
8590,
8591,
8592,
8593,
8594,
8595,
8596,
8597,
8598,
8599,
8600,
8601,
8602,
8603,
8604,
8605,
8606,
8607,
8608,
8609,
8610,
8611,
8612,
8613,
8614,
8615,
8616,
8617,
8618,
8619,
8620,
8621,
8622,
8623,
8624,
8625,
8626,
8627,
8628,
8629,
8630,
8631,
8632,
8633,
8634,
8635,
8636,
8637,
8638,
8639,
8640,
8641,
8642,
8643,
8644,
8645,
8646,
8647,
8648,
8649,
8650,
8651,
8652,
8653,
8654,
8655,
8656,
8657,
8658,
8659,
8660,
8661,
8662,
8663,
8664,
8665,
8666,
8667,
8668,
8669,
8670,
8671,
8672,
8673,
8674,
8675,
8676,
8677,
8678,
8679,
8680,
8681,
8682,
8683,
8684,
8685,
8686,
8687,
8688,
8689,
8690,
8691,
8692,
8693,
8694,
8695,
8696,
8697,
8698,
8699,
8700,
8701,
8702,
8703,
8704,
8705,
8706,
8707,
8708,
8709,
8710,
8711,
8712,
8713,
8714,
8715,
8716,
8717,
8718,
8719,
8720,
8721,
8722,
8723,
8724,
8725,
8726,
8727,
8728,
8729,
8730,
8731,
8732,
8733,
8734,
8735,
8736,
8737,
8738,
8739,
8740,
8741,
8742,
8743,
8744,
8745,
8746,
8747,
8748,
8749,
8750,
8751,
8752,
8753,
8754,
8755,
8756,
8757,
8758,
8759,
8760,
8761,
8762,
8763,
8764,
8765,
8766,
8767,
8768,
8769,
8770,
8771,
8772,
8773,
8774,
8775,
8776,
8777,
8778,
8779,
8780,
8781,
8782,
8783,
8784,
8785,
8786,
8787,
8788,
8789,
8790,
8791,
8792,
8793,
8794,
8795,
8796,
8797,
8798,
8799,
8800,
8801,
8802,
8803,
8804,
8805,
8806,
8807,
8808,
8809,
8810,
8811,
8812,
8813,
8814,
8815,
8816,
8817,
8818,
8819,
8820,
8821,
8822,
8823,
8824
] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAA | [
-0.135442,
0.101575,
-0.190819,
0.34160799999999997,
0.002274,
-0.075955,
0.031205,
0.041155,
0.134174,
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0.019503,
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0.004240000000000001,
0.12842399999999998,
0.250534,
0.671536,
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0.20133,
-0.102519,
0.150583,
1.819065,
1.285732,
5.185467,
0.7984129999999999,
0.061008,
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0.37038000000000004,
0.9435129999999999,
1.39771,
0.514739,
0.894528,
0.097133,
0.727673,
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0.057373,
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0.003339,
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0.083699,
0.023691,
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0.202086,
0.006242999999999999,
-0.000357,
0.058331999999999995,
-0.06832,
0.13455699999999998,
0.052433999999999995,
0.672825,
0.108542,
0.142308,
0.270825,
0.15292,
0.17027699999999998,
0.913832,
1.437777,
0.18820099999999998,
1.1872,
0.290189,
0.28956899999999997,
0.08595000000000001,
0.35703,
0.12238399999999999,
0.606587,
1.764154,
4.408006,
0.519571,
0.299264,
0.490361,
0.031269,
0.163829,
0.014839,
-0.098115,
0.097685,
0.018505,
-0.225245,
0.444364,
1.897389,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] | [
9075,
9076,
9077,
9078,
9079,
9080,
9081,
9082,
9083,
9084,
9085,
9086,
9087,
9088,
9089,
9090,
9091,
9092,
9093,
9094,
9095,
9096,
9097,
9098,
9099,
9100,
9101,
9102,
9103,
9104,
9105,
9106,
9107,
9108,
9109,
9110,
9111,
9112,
9113,
9114,
9115,
9116,
9117,
9118,
9119,
9120,
9121,
9122,
9123,
9124,
9125,
9126,
9127,
9128,
9129,
9130,
9131,
9132,
9133,
9134,
9135,
9136,
9137,
9138,
9139,
9140,
9141,
9142,
9143,
9144,
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9148,
9149,
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9151,
9152,
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9157,
9158,
9159,
9160,
9161,
9162,
9163,
9164,
9165,
9166,
9167,
9168,
9169,
9170,
9171,
9172
] | viral_gRNA | Siegfried,2014 |
Siegfried,2014 HIV-1 SHAPE(1M7) SSII-Mn(2+) Mut. from Lavender | AGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAACTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTATTACAAGCAGCTTATAGAG | [
0.049580000000000006,
0.121154,
0.247473,
0.076699,
0.24143000000000003,
0.142875,
0.037344999999999996,
0.9392849999999999,
0.25315499999999996,
0.779315,
0.055524,
0.33407699999999996,
0.345964,
0.40568299999999996,
0.542682,
0.188574,
0.046714,
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0.138433,
0.060482999999999995,
0.233008,
0.170814,
0.305869,
0.175647,
1.289326,
1.36247,
0.033832,
0.708235,
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0.133188,
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0.16838699999999998,
0.115149,
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0.27384000000000003,
0.14282799999999998,
0.065548,
0.105777,
0.21240299999999998,
0.606432,
0.7690589999999999,
1.128556,
1.112663,
0.364455,
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0.205145,
0.839289,
1.275292,
0.554565,
0.945963,
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0.053624,
0.375793,
0.267194,
0.101364,
0.22736399999999998,
0.6221300000000001,
0.149203,
0.541109,
0.29331199999999996,
0.169337,
0.346707,
0.13475299999999998,
0.203447,
0.28047,
0.072667,
0.425137,
0.227731,
0.059819,
0.151337,
0.25401799999999997,
0.32481000000000004,
0.281445,
0.39464699999999997,
0.18337199999999998,
0.065824,
0.159935,
0.032701,
0.656306,
0.42573099999999997,
0.24290199999999998,
0.321482,
0.381357,
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0.452227,
0.604327,
0.169481,
0.794894,
0.42951799999999996,
0.10725699999999999,
0.014792999999999999,
0.341099,
0.226885,
0.876734,
1.287455,
0.329362,
0.546354,
0.155885,
0.092262,
0.471056,
0.850613,
1.062201,
1.669832,
0.663712,
0.9260069999999999,
0.131079,
0.12884099999999998,
0.21096,
0.287839,
0.399003,
0.8451569999999999,
1.163717,
0.779072,
0.94386,
1.267338,
0.08383299999999999,
0.26758499999999996,
0.313833,
0.22999000000000003,
0.11176599999999999,
0.48769599999999996,
0.625132,
0.074112,
0.320274,
0.28329499999999996,
0.6529969999999999,
0.311589,
0.495647,
0.312791,
0.384745,
0.140989,
0.29523699999999997,
0.314342,
0.213528,
0.005745999999999999,
0.170203,
0.310062,
0.166264,
0.065219,
0.289093,
0.199032,
0.204447,
0.11513899999999999,
0.282446,
0.562462,
0.11456799999999999,
0.006194,
0.067022,
0.01667,
-0.051632,
0.09442,
0.17751799999999998,
0.38919299999999996,
0.483815,
0.214477,
0.558388,
0.155778,
-0.032646999999999995,
-0.110633,
-0.071089,
0.495726,
0.08560799999999999,
-0.091781,
1.671751,
0.6105149999999999,
1.298136,
0.679159,
0.264377,
0.17913199999999999,
0.34887199999999996,
0.295333,
0.179561,
0.388521,
0.481971,
0.281838,
0.7619049999999999,
0.09678099999999999,
0.232209,
0.17913099999999998,
0.09507499999999999,
0.137212,
0.47505699999999995,
0.931954,
0.42349699999999996,
0.589253,
0.993799,
1.004735,
1.306602,
0.237843,
0.681967,
0.6140329999999999,
0.31768599999999997,
0.38017399999999996,
0.25334799999999996,
0.369699,
0.223907,
0.667504,
0.30233299999999996,
0.561253,
0.859776,
0.317969,
0.5275500000000001,
1.813145,
0.741279,
1.014185,
1.32252,
1.5800239999999999,
0.907458,
1.208903,
1.102422,
0.512576,
0.252052,
0.078669,
0.19938000000000003,
0.11595699999999999,
0.131636,
0.27581,
0.72375,
0.648656,
1.167946,
0.8925000000000001,
0.569562,
0.19078799999999999,
0.126365,
0.193299,
0.150521,
1.007476,
0.5206459999999999,
0.47034000000000004,
0.45105399999999995,
0.445714,
0.016384,
-0.069474,
0.033971,
0.032195,
0.157281,
-0.064097,
0.213114,
-0.008138,
0.139709,
0.5731689999999999,
0.7410059999999999,
0.878505,
0.551427,
0.9538519999999999,
0.8378559999999999,
0.501908,
0.8225979999999999,
0.192882,
0.19628199999999998,
0.058987,
0.11155599999999999,
0.204416,
0.437057,
0.209063,
0.20191699999999999,
0.160994,
0.137151,
0.47904199999999997,
0.12182000000000001,
0.723954,
0.987432,
0.9017100000000001,
1.604765,
1.089043,
0.288534,
0.372316,
0.455665,
0.8127139999999999,
0.9214469999999999,
1.62691,
0.566755,
0.946884,
0.800779,
2.716878,
1.108515,
1.142102,
1.228233,
0.9888159999999999,
1.270864,
0.20729699999999998,
0.45053299999999996,
0.304622,
1.233783,
1.104634,
0.120541,
0.201174,
0.0145,
-0.1017,
0.108635,
0.522142,
0.577789,
1.218592,
0.6584249999999999,
0.34161,
0.424081,
0.058325999999999996,
0.044092
] | [
7975,
7976,
7977,
7978,
7979,
7980,
7981,
7982,
7983,
7984,
7985,
7986,
7987,
7988,
7989,
7990,
7991,
7992,
7993,
7994,
7995,
7996,
7997,
7998,
7999,
8000,
8001,
8002,
8003,
8004,
8005,
8006,
8007,
8008,
8009,
8010,
8011,
8012,
8013,
8014,
8015,
8016,
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8018,
8019,
8020,
8021,
8022,
8023,
8024,
8025,
8026,
8027,
8028,
8029,
8030,
8031,
8032,
8033,
8034,
8035,
8036,
8037,
8038,
8039,
8040,
8041,
8042,
8043,
8044,
8045,
8046,
8047,
8048,
8049,
8050,
8051,
8052,
8053,
8054,
8055,
8056,
8057,
8058,
8059,
8060,
8061,
8062,
8063,
8064,
8065,
8066,
8067,
8068,
8069,
8070,
8071,
8072,
8073,
8074,
8075,
8076,
8077,
8078,
8079,
8080,
8081,
8082,
8083,
8084,
8085,
8086,
8087,
8088,
8089,
8090,
8091,
8092,
8093,
8094,
8095,
8096,
8097,
8098,
8099,
8100,
8101,
8102,
8103,
8104,
8105,
8106,
8107,
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8109,
8110,
8111,
8112,
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8114,
8115,
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8119,
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8122,
8123,
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8125,
8126,
8127,
8128,
8129,
8130,
8131,
8132,
8133,
8134,
8135,
8136,
8137,
8138,
8139,
8140,
8141,
8142,
8143,
8144,
8145,
8146,
8147,
8148,
8149,
8150,
8151,
8152,
8153,
8154,
8155,
8156,
8157,
8158,
8159,
8160,
8161,
8162,
8163,
8164,
8165,
8166,
8167,
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8169,
8170,
8171,
8172,
8173,
8174,
8175,
8176,
8177,
8178,
8179,
8180,
8181,
8182,
8183,
8184,
8185,
8186,
8187,
8188,
8189,
8190,
8191,
8192,
8193,
8194,
8195,
8196,
8197,
8198,
8199,
8200,
8201,
8202,
8203,
8204,
8205,
8206,
8207,
8208,
8209,
8210,
8211,
8212,
8213,
8214,
8215,
8216,
8217,
8218,
8219,
8220,
8221,
8222,
8223,
8224,
8225,
8226,
8227,
8228,
8229,
8230,
8231,
8232,
8233,
8234,
8235,
8236,
8237,
8238,
8239,
8240,
8241,
8242,
8243,
8244,
8245,
8246,
8247,
8248,
8249,
8250,
8251,
8252,
8253,
8254,
8255,
8256,
8257,
8258,
8259,
8260,
8261,
8262,
8263,
8264,
8265,
8266,
8267,
8268,
8269,
8270,
8271,
8272,
8273,
8274
] | viral_gRNA | Siegfried,2014 |
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