id stringlengths 16 30 | sequence stringlengths 26 951 | secondary_structure stringlengths 26 951 | aligned_ids listlengths 2 10 | aligned_sequences listlengths 2 10 |
|---|---|---|---|---|
URS0001A24A5A_12908_1-76 | AGAGUCACCCUUAAGGUGCUCUUUUUCUGCGUGUUAAUAGCUUUUCUCAUUGGCCUGUGAAAGCGGUUAGUGAAUC | ((((.(...........)))))...........(((((.(((.(((.((......)).)))))).)))))...... | [
"URS0001A24A5A_12908/1-76",
"URS0001A23365_12908/1-73",
"URS0001A244C4_12908/1-70",
"URS0001A233DF_12908/1-73"
] | [
"AGAGUCACC--CUUAA----------GGUG-CUCU-----UUUUCUGCGUGUUAAUAGCUU-UU--CUCA----------UUGGCC-UGUGA-AAGCGGUUAGUG-AAUC",
"GAGCC------CCUUAAAA-----------GGCUC----AUUAUCUGCGUGUUAAUAGCUU-UU--CUCA----------UUGGCC-UGGGA-AAGUGGUUAGUG-AAUC",
"AGCCC------UUAAU--------------GGGCU---CUCUUUCUGCGUGUUAAUAGCUU-UU--CUC-----------UUG... |
URS0001A24A6E_12908_1-80 | GAUAUGCGAUGAUGCAGAAGGUGGCCGCCCCUUGAGGCGGGGAAUUUCUGCGGAGUAUGUCCGAUUUACAAACCGGGCGA | .............(((..(((...(((((......)))))....))).)))......((((((..........)))))). | [
"URS0001A24A6E_12908/1-80",
"URS0001A2401D_12908/1-77",
"URS0001A248DB_12908/1-74"
] | [
"GAUAUGCGAUGAUGCAGA-AGGUGGCCGCCCCUUGA----------------------------------------------------------------GGCGG-GGAAU-UUC-UGCGGAGU--AUGUC-------C--G--AUUUACAAAC-------------CG--------------GGCGA",
"---AUGCGAUGAUGCA-GAAGGUGGCCGUCCUUUGA----------------------------------------------------------------GACGG-GGAAU-UUC-UGCGG... |
URS0001A24A71_12908_1-31 | GAUUACAAUUUCCUUUCUGUAAUCGCGGCUG | (((((((..........)))))))....... | [
"URS0001A24A71_12908/1-31",
"URS0001A24395_12908/1-29",
"URS0001A23DEF_12908/1-31",
"URS0001A241C3_679937/1-31"
] | [
"GAUUACA----------------------------------AUUUCCUUUC---UGUAAUCGCGG-CU-G",
"GAUGCC-----------------------------------ACUCCUUUCC----GUAAUCGCGG-CU-G",
"G-AUUGCA----------------------------------UUUCCUUUC--UGUAAUUCGCGG-CU-G",
"GAUUACA----------------------------------UCUUCUUCUC---UGUAAUCGCGG-CU-G"
] |
URS0001A24A79_12908_1-77 | GGGAAUACGCUUAGGAUUCUCAUAGCGUGGUCGUGUUAAUAGUUCUUCUUUUGGCCGAGGAGAGCGGUUAGUGAAUC | ((((((.........))))))..............(((((.(((((((((......))))))))).)))))...... | [
"URS0001A24A79_12908/1-77",
"URS0001A24A79_1115809/1-77",
"URS0001A24A79_1122980/1-77",
"URS0001A23C3D_12908/1-77"
] | [
"GGGAAUAC---GCUUAG----------G-AUUCUC--AUAGCGUGGUCGUGUUAAUAGUU--CU--UCUU----------UUGGCC-GAGGA-GAGCGGUUAGUG-AAUC",
"GGGAAUAC---GCUUAG----------G-AUUCUC--AUAGCGUGGUCGUGUUAAUAGUU--CU--UCUU----------UUGGCC-GAGGA-GAGCGGUUAGUG-AAUC",
"GGGAAUAC---GCUUAG----------G-AUUCUC--AUAGCGUGGUCGUGUUAAUAGUU--CU--UCUU----------UUG... |
URS0001A24A85_12908_1-82 | CUGAUCGAGACGUUGGGCCAACGCCAGUGCAGCGCGCCCGGUUCCAGAGAAGAAUAUCUCUCCGGAAACGUCGAAGAGUCAG | (((((...(((((.((((...(((.......))).))))..((((.((((........)))).))))))))).....))))) | [
"URS0001A24A85_12908/1-82",
"URS0001A23F03_12908/1-79",
"URS0001A24A94_12908/1-79",
"URS0001A2422E_12908/1-79",
"URS0001A23BE2_12908/1-80",
"URS0001A23B65_12908/1-79",
"URS0001A249C4_12908/1-79",
"URS0001A242E9_12908/1-79",
"URS0001A2476D_12908/1-80",
"URS0001A23843_12908/1-79"
] | [
"CUGAU-CGAGACGU-U----GGGCCAAC---GC------CAGUGCA--------GC-GCGCCCGG----UUCCA------GAGA---------------AGAAUAUC--------------------UCUC------------C-GGAA------ACGUCGAAGA-----GUCAG",
"CUGAU-CGAGACGA-U----GGGCCAAC---GC------CAGUGCA--------GC-GCGCCCGG----UUCCG------GGAA---------------CACUC-----------------------UUUC---... |
URS0001A24A87_1628856_1-26 | UCCGUUGCUGGGUCGCCUGUAGCGGA | ((((((((.((....)).)))))))) | [
"URS0001A24A87_1628856/1-26",
"URS0001A238F5_1121018/1-26",
"URS0001A238CA_1214065/1-25",
"URS0001A23899_1223569/1-26",
"URS0001A23899_1225785/1-26",
"URS0001A23AC1_1336237/1-26",
"URS0001A23AC1_1005995/1-26",
"URS0001A23AC1_480813/1-26",
"URS0001A23899_1224149/1-26",
"URS0001A24282_1216966/1-26"
... | [
"UCCGUUGC-UGGGUC-GCCUGUAGCGGA",
"UCUGCUAC-UGGGUC-GCCUGUCGCAGA",
"-CCGCUGC-UGGGUC-GCCUGUAGCGGU",
"CCUGUUGC-UGGGUC-GCCUGUAACAGG",
"CCUGUUGC-UGGGUC-GCCUGUAACAGG",
"UCUGUUGC-UGGGUC-GCCUGUAACAGA",
"UCUGUUGC-UGGGUC-GCCUGUAACAGA",
"UCUGUUGC-UGGGUC-GCCUGUAACAGA",
"CCUGUUGC-UGGGUC-GCCUGUAACAGG",
"UCUGCUGC-... |
URS0001A24A98_12908_1-28 | UAACCUCUGGCGAUGUUCGUGAACGUUG | ((((...(.((((...))))..).)))) | [
"URS0001A24A98_12908/1-28",
"URS0001A24699_12908/1-28",
"URS0001A23776_12908/1-28",
"URS0001A23358_12908/1-28",
"URS0001A2353F_12908/1-28",
"URS0001A243B7_12908/1-28",
"URS0001A23ADB_12908/1-28",
"URS0001A23351_12908/1-28",
"URS0001A248BD_12908/1-28",
"URS0001A23930_12908/1-28"
] | [
"UAACCUCUGGCGA-UGU--------UCGUGAACGUUG",
"UAACCUCUGGCG--AUGUC-------CGUGAAUGUUA",
"CAACCUCUGGCA--AGAGA-------UGUUAACGUUG",
"CAACCUCUGGCG--AUGUA-------CGUGUAUGUUG",
"CAACCUCUGGCGA-GCA--------UCGUGAACGUUG",
"CAACCUCUGGCGA-AGU--------UCGCGAAUGUUG",
"CAACCUCUGGCG--AGGGA-------CGUGAAUGUUG",
"UAACCUCUGGCG--... |
URS0001A24AD5_12908_1-75 | CUGGGAACAGCACAGCCGCAUAUCCGACUUCGUCGCGCAGGCCUCGCGCCUCGCGGCUUGGGAGUGCGGACGUGC | .........((((..((((((..((......((((((..............))))))...)).))))))..)))) | [
"URS0001A24AD5_12908/1-75",
"URS0001A23DAF_12908/1-66",
"URS0001A244BE_12908/1-71",
"URS0001A248C4_12908/1-71",
"URS0001A248C4_1230455/1-71",
"URS0001A248C4_1194088/1-71",
"URS0001A248C4_1227468/1-71",
"URS0001A248C4_1227483/1-71",
"URS0001A23907_1498500/1-71",
"URS0001A24703_12908/1-72"
] | [
"CUGGGAACAGCACAGCCGCAUAUCCGACUUCGUCGCGCAGGC------------------------------CUCGC-------------------------------------------------GCCU-CGCGGC-U-U-GGGAGUGCGGACGUGC",
"AUGGGAACAGCACAGCCGCAUAUCCGACCU-GCCGCCC----------------------------------GUUC------------------------------------------------------GGGUGGC-U-U-GGGAGUGCG... |
URS0001A24AD7_12908_1-77 | GGGGAAAACACUUAGAAUCCCCGUGGACUAGAGUGUGAAUAGCAACGUCUUUGGCCGGACGUCGUGGUUCGGGAAUC | (((((............))))).............(((((.((.((((((......)))))).)).)))))...... | [
"URS0001A24AD7_12908/1-77",
"URS0001A2340A_12908/1-76",
"URS0001A235A0_12908/1-77",
"URS0001A23ED7_12908/1-75",
"URS0001A2424C_12908/1-76",
"URS0001A2370A_12908/1-77",
"URS0001A23919_12908/1-76",
"URS0001A23A81_12908/1-76",
"URS0001A24062_12908/1-76",
"URS0001A237AF_12908/1-76"
] | [
"GGGGA------AAACACUUAGAA-------UCCCC---GUGGACUAGAGUGUGAAUAGCA--AC--GUCU----------UUGGCC-GGACG-UCGUGGUUCGGG-AAUC",
"GGGGAAACU--CUU------------AGAAUCCCC---GUGAACAGGGGUGUGAAUAGCG--GC--GUCU----------UUGGCC-GGGCG-AAGCGGUUCGUG-AAUC",
"GGGGAUAC---ACUUA-----------GAGUCCCC---UGGAUAGCGUGUGUUAAUAGCAA-CG--UCCU----------GUG... |
URS0001A24ADC_12908_1-53 | CGGGAAUGCGCCCGCAGGGAUGUGACUGCGAAAAAAAGCAGUUGAACCAUAAA | ((((......))))..((.....(((((..........)))))...))..... | [
"URS0001A24ADC_12908/1-53",
"URS0001A23EC9_12908/1-52"
] | [
"CGGG-------------------------------AAUGCG-----------------------------------CCC-G------CAGGGAUGU-GACUGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAAA-------------... |
URS0001A24ADF_12908_1-74 | GGGGACCUGUCACAGGGGCCCUAUAAACCACCGGCGGGCAAAUUCCCGUCGGCCAAGCAAACGGAAGACAGAAA | ((((.(((.......)))))))........(.(..(((......))).).)....................... | [
"URS0001A24ADF_12908/1-74",
"URS0001A24264_12908/1-64",
"URS0001A2344E_12908/1-64",
"URS0001A246D8_12908/1-67",
"URS0001A23CF4_366616/1-72",
"URS0001A2416F_12908/1-70",
"URS0001A23EE7_12908/1-66",
"URS0001A23D2E_12908/1-66",
"URS0001A23EDA_12908/1-66",
"URS0001A238EA_1294273/1-62"
] | [
"GGGG-ACCU--GUCACAG----------------------------GGG----CCC-UAUAAACCA------CCGGC-----------GGGC------------------------AAAU-------------------------------------------------------------------------UCCC-------------------------GUCGG--C--CAAGC-AAACGGA-AGACAGA-AA",
"GGGG-AGC---UUCGGC------------------------------GCCCUA... |
URS0001A24AEB_1401073_1-76 | GGGGAAUUUUCUUAGAACCCCAUACGAUACGUGUUAAUAGUGUUGUCUUUGGCCGGGCAGCAUGGUUAGGUCAAGC | ((((.............))))............(((((.(((((((((......))))))))).)))))....... | [
"URS0001A24AEB_1401073/1-76",
"URS0001A23653_28125/1-74",
"URS0001A248DE_1122993/1-74",
"URS0001A23D54_649761/1-74",
"URS0001A23F78_12908/1-74",
"URS0001A247E2_12908/1-75",
"URS0001A232AA_12908/1-75",
"URS0001A23567_1236518/1-75",
"URS0001A23567_12908/1-75",
"URS0001A2470A_1227276/1-75"
] | [
"GGGG-------AAUUUUCUUAGAA-------CCCC----AUACGAUACGUGUUAAUAGUG--UU--GUCU----------UUGGCC-GGGCA-GCAUGGUUAGGUCAAGC",
"GGGAUUUU---CUU-------------AGAAUCCC----AUACGUUACGUGUUAAUAACA--UA--GUCU----------UUGGCC-GGGCU-AUGUGGUUAGGAAAAGC",
"GGGGUACU---CUU-------------AGAGCCCC----AUACGAUGCAUGUUAAUAGUG--UU--GUCU----------UUG... |
URS0001A24AF8_987045_1-48 | UUGGUUCCGGUUCACGGUUCGGCACCCUGCCGCACCGACCCGGCGGCC | ..(((.((((....((((.(((.......))).))))..))))..))) | [
"URS0001A24AF8_987045/1-48",
"URS0001A2493C_12908/1-42",
"URS0001A236E2_12908/1-39",
"URS0001A247E4_12908/1-39",
"URS0001A23406_12908/1-39",
"URS0001A23B53_1120935/1-39"
] | [
"UUGG-UUCCGGUUCACGGUUCGGCA-----------------------CCC--------------------------------------------------------------------UGCCGCACCGACCCGGCG-GCC",
"UUGG-CUCCGGUUCACGAC-----------------------------GCGUGACCA--------------------------------------------------------------------GUCGACCCGGCG-GCC",
"CCGG-CACCGGUUCCCGUG--... |
URS0001A24B0C_12908_1-60 | GAAAGGCUGCCAUAUUUCGCCAUCCGGCAGCUGGGUGCAUACCGAGACACCCCAAUUAGG | ....(((((((..............)))))))(((((..........)))))........ | [
"URS0001A24B0C_12908/1-60",
"URS0001A23289_12908/1-48",
"URS0001A233CC_12908/1-56",
"URS0001A23363_12908/1-52",
"URS0001A236A8_12908/1-57",
"URS0001A23940_12908/1-57",
"URS0001A238F8_12908/1-57",
"URS0001A238F8_1226324/1-57",
"URS0001A23DB0_12908/1-57",
"URS0001A23DB0_1121115/1-57"
] | [
"GAAAGGCUGCCAUAUUUCGCCA-----------------------------------------------UCCGG-CAGCUGGGUG-----------------------------------CAUACCGAGA-----------------------------------------------------------------------------------------------------CACCCCAA----UUAGG",
"GAAAGGCGGCC---GUAA-------------------------------------------... |
URS0001A24B1A_12908_1-81 | GGGAGUGCAUCUUAGAGCUUCCGCAGCCGUGAGGUGUUAAUAGUCUGUCUCAUUUGGCCGAGACACGACGGUUAGUGAAUC | ((((((..........))))))..............(((((.(((.((.((..........)).))))).)))))...... | [
"URS0001A24B1A_12908/1-81",
"URS0001A24298_12908/1-81",
"URS0001A231D7_12908/1-81",
"URS0001A23755_12908/1-74",
"URS0001A2375D_12908/1-75",
"URS0001A239FA_12908/1-75",
"URS0001A23B31_12908/1-76",
"URS0001A2324C_1392486/1-76",
"URS0001A24AA1_12908/1-76",
"URS0001A23FB6_12908/1-75"
] | [
"GGGAGUGC---AUCUUA----------GAGCUUCC--GCAGCCGUGAGGUGUUAAUAGUCU-GU--CUC---------AUUUGGCCGAGACA-CGACGGUUAGUG-AAUC",
"GGGAGU-----GUGUCUUAGA--------GCUUCC--GCAGCCGUGAGGUGUUAAUAGUCU-GU--CUC---------AUUUGGCCGAGACA-CGACGGUUAGUG-AAUC",
"GGGAGU-----GUGUCUUAGA--------GCUUCC--ACAGCCGUGAGGUGUUAAUAGUCU-GU--CUC---------AUUUG... |
URS0001A24B1D_12908_1-83 | CGCCGUGAACUGAGGGGUCCUGUCUCCCCCUUCAGAUCCGGUUGCGGGCCAUUCUGCCCGCCGACAUCAUAAGUGAGAAGGAG | ..(((.((.((((((((..........)))))))).)))))..(((((........)))))...................... | [
"URS0001A24B1D_12908/1-83",
"URS0001A2328A_12908/1-77",
"URS0001A2354A_12908/1-76",
"URS0001A23AF8_338963/1-76",
"URS0001A23754_12908/1-75"
] | [
"CGCCGUGAACUGAGGGG-----UCCUGUCUCCCCCUUCAGAUCCGGUU------------------GCGGGC------CAUUCU------GCCCGC--------CGACAUCAUAAGUGAGAAGGAG",
"GUCCGUGAACUGAGGGG-----AAAUGUCUCCCCCUUCAGAUCCGGC-------------------GGCGGG------AUGU--------CCCGCC-----------CAUUACACGCAAGAAGGAG",
"GUCCGUGAACUGAGGGG-----AAAUGUCUCCCCCUUCAGAUCCGGC----... |
URS0001A24B28_73044_1-48 | UCGGCUCCGGUUCACGCACCCGCAUUCCCGCGGUGGCGACCCGGCGCC | ..(((.((((....(((..(((........)))..)))..)))).))) | [
"URS0001A24B28_73044/1-48",
"URS0001A23F85_12908/1-47",
"URS0001A24008_12908/1-46",
"URS0001A23D1D_12908/1-45",
"URS0001A23B11_12908/1-39",
"URS0001A236FE_12908/1-47",
"URS0001A245DB_29306/1-48",
"URS0001A23D52_700597/1-47",
"URS0001A23B60_12908/1-47",
"URS0001A23B60_1463917/1-47"
] | [
"UCGG-CUCCGGUUCACGCACCCGC------------------------AUUCCC------------------------------------------------------------------GCGGUGGCGACCCGGC--GCC",
"GUGG-CUCCGGUUCACGGCC--AGC-----------------------ACCCC------------------------------------------------------------------GCUGAGGCCGACCCGGA--GCC",
"CUGG-CUCCGGUUCACGUC-C... |
URS0001A24B35_1121370_1-86 | ACUCAGGCACGAUCUGCGCCUUAUAUAUACGCACCAAUCAAGCGUUAUCUGCGCGCCGAACCGACCUGAAGUUCAAUCCUGAGGGA | (((((((.....((.((((.........((((.........)))).......)))).)).....)))).))).............. | [
"URS0001A24B35_1121370/1-86",
"URS0001A24ABF_196627/1-56"
] | [
"ACUCAGGCACGAUCUGCGC-----CUUAUAUAUACGC-------------------------------ACCAAUCAA------------------------------------------GCGUUAUCUGC--------------------GCGCCGAACCGACCUGAAGU--UCAAUCCUGAGGGA",
"ACUCGGGCACGAUCUGGC--------------------------------------------------AUCC---------------------------------------------------... |
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