| APIURL = 'https://demo.kitware.com/histomicstk/api/v1/' | |
| # apiKey = None # interactive login | |
| apiKey = 'n0Kp1ez8YOnOiWNoACryzeBlIzbUDW3iOD2DmPLI' | |
| source_folder_id = '5bbdeba3e629140048d017bb' | |
| SAVEPATH = './' | |
| ROIBOUNDSPATH = './meta/roiBounds.csv' | |
| # Set either MPP or MAG. | |
| # If both are None, base (scan) magnification is used. | |
| # Microns-per-pixel -- best use this | |
| # MPP of 0.25 is "standardized" at 40x using original Aperio scanners | |
| # MPP = None | |
| MPP = 0.25 | |
| # If you prefer to use whatever magnification is reported | |
| MAG = None | |
| # MAG = 40.0 | |
| # What things to download? -- comment out whet you dont want | |
| PIPELINE = ( | |
| 'images', | |
| 'masks', | |
| # 'annotations', | |
| ) | |
| # if you only want to download data for specific slides | |
| SLIDES_TO_KEEP = None | |
| # SLIDES_TO_KEEP = ['TCGA-BH-A1FC', 'TCGA-A8-A07C', 'TCGA-A1-A0SK'] | |