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public short[] loadShortArray() throws IOException { if (!_file.exists() || _file.length() == 0) { return null; } Chronos c = new Chronos(); DataReader r = IOFactory.createDataReader(_file, _type); try { r.open(); r.position(DATA_START_POSITION); short[] ar...
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public synchronized <T extends EntryValue> void update(List<Entry<T>> entryList) throws IOException { Chronos c = new Chronos(); // Sort values by position in the array file T[] values = EntryUtility.sortEntriesToValues(entryList); if (values == null || values.length == 0) return; // Obt...
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public void setWaterMarks(long lwmScn, long hwmScn) throws IOException { if(lwmScn <= hwmScn) { writeHwmScn(hwmScn); _writer.flush(); writeLwmScn(lwmScn); _writer.flush(); } else { throw new IOException("Invalid water marks: lwmScn=" + lwmScn + " hwmScn=" + ...
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public synchronized void resetAll(long value) throws IOException { if(_elementSize != 8) { throw new IOException("Operation aborted: elementSize=" + _elementSize); } _writer.flush(); _writer.position(DATA_START_POSITION); for(int i = 0; i < this._arrayLength; i++) { ...
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public synchronized void setArrayLength(int arrayLength, File renameToFile) throws IOException { if(arrayLength < 0) { throw new IOException("Invalid array length: " + arrayLength); } if(this._arrayLength == arrayLength) return; // Flush all the changes. this.flush(...
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public static Usage getUsage(String cobolUsage) { if (cobolUsage == null) { return null; } if (cobolUsage.equals(BINARY)) { return Usage.BINARY; } else if (cobolUsage.equals("COMP")) { return Usage.BINARY; } else if (cobolUsage.equals("COMPUTAT...
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public static XDMAuditor getAuditor() { AuditorModuleContext ctx = AuditorModuleContext.getContext(); return (XDMAuditor)ctx.getAuditor(XDMAuditor.class); }
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public void auditPortableMediaImport( RFC3881EventOutcomeCodes eventOutcome, String submissionSetUniqueId, String patientId, List<CodedValueType> purposesOfUse) { if (!isAuditorEnabled()) { return; } ImportEvent importEvent = new ImportEvent(false, eventOutcome, new IHETransactionEventTy...
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public void auditPortableMediaCreate( RFC3881EventOutcomeCodes eventOutcome, String submissionSetUniqueId, String patientId, List<CodedValueType> purposesOfUse) { if (!isAuditorEnabled()) { return; } ExportEvent exportEvent = new ExportEvent(true, eventOutcome, new IHETransactionEventType...
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public long tick() { long tick = System.currentTimeMillis(); long diff = tick - _lastTick; _lastTick = tick; return diff; }
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public String translate(final Reader cobolReader, final String targetNamespace, final String xsltFileName) throws XsdGenerationException { try { if (_log.isDebugEnabled()) { _log.debug("Translating with options: {}", getConfig() .toStri...
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public List < CobolDataItem > toModel(final Reader cobolReader) throws RecognizerException { return emitModel(parse(lex(clean(cobolReader)))); }
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public String clean(final Reader cobolReader) throws CleanerException { if (_log.isDebugEnabled()) { _log.debug("1. Cleaning COBOL source code"); } switch (getConfig().getCodeFormat()) { case FIXED_FORMAT: CobolFixedFormatSourceCleaner fixedCleaner = new CobolFixe...
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public CommonTokenStream lex(final String cleanedCobolSource) throws RecognizerException { if (_log.isDebugEnabled()) { _log.debug("2. Lexing COBOL source code: {}", cleanedCobolSource); } try { CobolStructureLexer lex = new CobolStructureLexerImpl( ...
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public CommonTree parse(final CommonTokenStream tokens) throws RecognizerException { if (_log.isDebugEnabled()) { _log.debug("3. Parsing tokens: {}", tokens.toString()); } try { CobolStructureParser parser = new CobolStructureParserImpl(tokens, ...
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public List < CobolDataItem > emitModel(final CommonTree ast) throws RecognizerException { List < CobolDataItem > cobolDataItems = new ArrayList < CobolDataItem >(); if (_log.isDebugEnabled()) { _log.debug("4. Emitting Model from AST: {}", ((ast == null) ? "nu...
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public static List < String > getNonUniqueCobolNames( final List < CobolDataItem > cobolDataItems) { List < String > cobolNames = new ArrayList < String >(); List < String > nonUniqueCobolNames = new ArrayList < String >(); for (CobolDataItem cobolDataItem : cobolDataItems) { ...
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private Socket getTLSSocket(InetAddress destination, int port) throws Exception { String key = destination.getHostAddress() + ":" + port; synchronized (socketMap){ Socket socket = socketMap.get(key); if (socket == null){ // create a new one NodeAuthModuleContext nodeAuthContext = NodeAuthModuleContex...
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@Override public synchronized void clear() { File[] files = mRootDirectory.listFiles(); if (files != null) { for (File file : files) { file.delete(); } } mEntries.clear(); mTotalSize = 0; //todo add queue markers //JusLo...
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@Override public synchronized Entry get(String key) { CacheHeader entry = mEntries.get(key); // if the entry does not exist, return. if (entry == null) { return null; } File file = getFileForKey(key); CountingInputStream cis = null; try { ...
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@Override public synchronized void initialize() { if (!mRootDirectory.exists()) { if (!mRootDirectory.mkdirs()) { //silently ignoring no cache is not good so we throw and let the user decide // what // to do throw new IllegalStateEx...
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public MultipartBuilder addPart(NetworkRequest part) { if (part == null) { throw new NullPointerException("part == null"); } parts.add(part); return this; }
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public NetworkRequest build() { if (parts.isEmpty()) { throw new IllegalStateException("Multipart body must have at least one part."); } MultipartRequest mrb = new MultipartRequest(type, boundary, parts); Buffer bb = new Buffer(); try { mrb.writeOrCountByt...
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protected void addNamespaceContext() { NamespaceMap prefixmap = new NamespaceMap(); NamespacePrefixList npl = getXsd().getNamespaceContext(); if (npl == null) { /* We get an NPE if we don't add this. */ prefixmap.add("", XMLConstants.W3C_XML_SCHEMA_NS_URI); } else...
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public static String getErrorMessage( final Logger log, final BaseRecognizer recognizer, final RecognitionException e, final String superMessage, final String[] tokenNames) { if (log.isDebugEnabled()) { List < ? > stack = BaseRecognizer.get...
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public static String makeUserMsg(final RecognitionException e, final String msg) { if (e instanceof NoViableAltException) { return msg.replace("no viable alternative at", "unrecognized"); } else if (e instanceof UnwantedTokenException) { return msg.replace("extraneous input", "un...
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protected void initIndexPersistableListener() { _index.setPersistableListener(new PersistableListener() { @Override public void beforePersist() { try { PersistableListener l = _listener; if(l != null) l.beforePersist(); ...
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public void populate() throws Exception { for (int i = 0, cnt = _partition.getIdCount(); i < cnt; i++) { int memberId = _partition.getIdStart() + i; _partition.set(memberId, createDataForMember(memberId), System.nanoTime()); } _partition.sync(); }
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public void doRandomReads(int readCnt) { Random rand = new Random(); int idStart = _partition.getIdStart(); int idCount = _partition.getIdCount(); for (int i = 0; i < readCnt; i++) { int memberId = idStart + rand.nextInt(idCount); System.out.printf("MemberId=%-10d...
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public static void main(String[] args) { try { // Parse arguments: homeDir idStart idCount File homeDir = new File(args[0]); int idStart = Integer.parseInt(args[1]); int idCount = Integer.parseInt(args[2]); // Create an instance of KratiDa...
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@Override public synchronized Clock updateHWMark(String source, long hwm) { _sourceWaterMarks.saveHWMark(source, hwm); return current(); }
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public static PDQConsumerAuditor getAuditor() { AuditorModuleContext ctx = AuditorModuleContext.getContext(); return (PDQConsumerAuditor)ctx.getAuditor(PDQConsumerAuditor.class); }
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public void auditPDQQueryEvent(RFC3881EventOutcomeCodes eventOutcome, String pixManagerUri, String receivingFacility, String receivingApp, String sendingFacility, String sendingApp, String hl7MessageControlId, String hl7QueryParameters, String[] patientIds) { if (!isAuditorEnabled()) { return; } ...
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public String formatKey(URI uri) throws URISyntaxException { if (uri == null) { throw new URISyntaxException("","URI specified is null"); } return formatKey(uri.getHost(), uri.getPort()); }
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protected void submitSegmentIndexBuffer() { if(_sibEnabled && !_sib.isDirty()) { _sib.setSegmentId(_segment.getSegmentId()); _sib.setSegmentLastForcedTime(_segment.getLastForcedTime()); _segmentManager.submit(_sib); } else { _segmentManager.remove(_sib); ...
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protected void init() { try { // Initialize the current working segment _segment = _segmentManager.nextSegment(); // Segment index buffer is enabled by default! _sib = _segmentManager.openSegmentIndexBuffer(_segment.getSegmentId()); if(!_s...
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protected void decrOriginalSegmentLoad(int index) { try { long address = getAddress(index); int segPos = _addressFormat.getOffset(address); int segInd = _addressFormat.getSegment(address); int length = _addressFormat.getDataSize(address); ...
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@Override public byte[] get(int index) { rangeCheck(index); try { long address = getAddress(index); int segPos = _addressFormat.getOffset(address); int segInd = _addressFormat.getSegment(address); // no data found if(s...
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public int read(int index, byte[] dst) { rangeCheck(index); try { long address = getAddress(index); int segPos = _addressFormat.getOffset(address); int segInd = _addressFormat.getSegment(address); // no data found if(segPo...
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@Override public int transferTo(int index, WritableByteChannel channel) { rangeCheck(index); try { long address = getAddress(index); int segPos = _addressFormat.getOffset(address); int segInd = _addressFormat.getSegment(address); ...
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@Override public synchronized void clear() { if(isOpen()) { _compactor.clear(); _addressArray.clear(); _segmentManager.clear(); this.init(); } }
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@Override public synchronized void close() throws IOException { if (_mode == Mode.CLOSED) { return; } _mode = Mode.CLOSED; try { // THE CALLS ORDERED. _compactor.shutdown(); // shutdown compactor /* Cal...
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@Override public synchronized void open() throws IOException { if (_mode == Mode.OPEN) { return; } try { _addressArray.open(); _segmentManager.open(); _compactor.start(); init(); _mode = Mode.OPEN; ...
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protected void fireBeforePersist() { PersistableListener l = _listener; if(l != null) { try { l.beforePersist(); } catch(Exception e) { _log.error("failure on calling beforePersist", e); } } }
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protected void fireAfterPersist() { PersistableListener l = _listener; if(l != null) { try { l.afterPersist(); } catch(Exception e) { _log.error("failure on calling afterPersist", e); } } }
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public String cleanFixedLine(final String line) { StringBuilder cleanedLine = new StringBuilder(); int length = line.length(); /* Clear sequence numbering */ for (int i = 0; i < _startColumn - 1; i++) { cleanedLine.append(" "); } /* Trim anything beyond end...
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private void freeCompactedSegments() { SegmentManager segManager = _dataArray.getSegmentManager(); if(segManager == null) return; while(!_freeQueue.isEmpty()) { Segment seg = _freeQueue.remove(); try { segManager.freeSegment(seg); } ca...
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private boolean compact() throws IOException { try { final boolean sibEnabled = _dataArray.isSibEnabled(); _segTarget = _dataArray.getSegmentManager().nextSegment(); for(Segment seg : _segSourceList) { if(!_enabled) { try { ...
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private boolean compact(Segment segment, SegmentIndexBuffer sibSource, Segment segTarget) throws IOException { Segment segSource = segment; int segSourceId = segSource.getSegmentId(); int segTargetId = segTarget.getSegmentId(); Chronos c = new Chronos(); if(!segment.can...
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@Override public void run() { while(_enabled) { if(_newCycle.compareAndSet(true, false)) { // One and only one compactor is at work. _lock.lock(); try { reset(); _state = State.INIT; ...
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protected ByteBuffer getByteBuffer(int bufferLength) { if(_buffer == null) { _buffer = ByteBuffer.wrap(new byte[bufferLength]); _log.info("ByteBuffer allocated for buffering"); } return _buffer; }
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private void toStringRenames(final StringBuilder sb) { if (getRenamesSubject() != null) { sb.append(','); sb.append("renamesSubject:" + getRenamesSubject()); } if (getRenamesSubjectRange() != null) { sb.append(','); sb.append("renamesSubjectRange:"...
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private void toStringCondition(final StringBuilder sb) { if (getConditionLiterals().size() > 0) { toStringList(sb, getConditionLiterals(), "conditionLiterals"); } if (getConditionRanges().size() > 0) { toStringList(sb, getConditionRanges(), "conditionRanges"); } ...
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private void toStringList(final StringBuilder sb, final List < ? > list, final String title) { sb.append(','); sb.append(title + ":["); boolean first = true; for (Object child : list) { if (!first) { sb.append(","); } else { ...
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@Override public void reinitValue(DataReader in, EntryValueInt value) throws IOException { value.reinit(in.readInt(), /* array position */ in.readInt(), /* data value */ in.readLong() /* SCN value */); }
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private static void initializeDefaultModules(SecurityContext context) { if (context.isInitialized()) { return; } if (LOGGER.isDebugEnabled()) { LOGGER.debug("SecurityContext default module initializer starting"); } String moduleName; // Loop through the module names for (int i=0; i<DEFAULT...
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public void setAuditSourceId(String sourceId, String enterpriseSiteId) { setAuditSourceId(sourceId, enterpriseSiteId, (RFC3881AuditSourceTypes[])null); }
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public void setAuditSourceId(String sourceId, String enterpriseSiteId, RFC3881AuditSourceTypes[] typeCodes) { addAuditSourceIdentification(sourceId, enterpriseSiteId, typeCodes); }
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public void setRetention(long duration, TimeUnit timeUnit) { this._duration = Math.max(1, duration); this._timeUnit = timeUnit; long millis = TimeUnit.MILLISECONDS == timeUnit ? _duration : TimeUnit.MILLISECONDS.convert(_duration, timeUnit); _timeMillis = Math.ma...
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private void expand(int i) { /* Can the buffer handle @i more bytes, if not expand it */ if (count + i <= buf.length) { return; } byte[] newbuf = mPool.getBuf((count + i) * 2); System.arraycopy(buf, 0, newbuf, 0, count); mPool.returnBuf(buf); buf = new...
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protected void checkCobolSourceFile(final File cobolSourceFile) throws IOException { if (cobolSourceFile == null) { throw new IOException("You must provide a COBOL source file"); } if (!cobolSourceFile.exists()) { throw new IOException("COBOL source file " + ...
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protected void checkTarget(final File target) throws IOException { if (target == null) { throw new IOException("You must provide a target directory or file"); } if (!target.exists()) { String extension = FilenameUtils.getExtension(target.getName()); if (extens...
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protected String getUniqueTargetNamespace(String targetNamespacePrefix, final String baseName) throws IOException { if (targetNamespacePrefix == null || targetNamespacePrefix.length() == 0) { return null; } if (baseName == null || baseName.length() == 0)...
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protected void auditQueryEvent(boolean systemIsSource, IHETransactionEventTypeCodes transaction, RFC3881EventOutcomeCodes eventOutcome, String sourceFacility, String sourceApp, String sourceAltUserId, String sourceNetworkId, String destinationFacility, String destinationApp, String destinationAltUserId, Strin...
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public static AuditorModuleContext getContext() { SecurityContext securityContext = SecurityContextFactory.getSecurityContext(); if (!securityContext.isInitialized()) { securityContext.initialize(); } AbstractModuleContext moduleContext = securityContext.getModuleContext(CONTEXT_ID); if (null == module...
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public AuditMessageSender getSender() { if (customSender == null){ String transport = AuditorModuleContext.getContext().getConfig().getAuditRepositoryTransport(); if (transport.equalsIgnoreCase("TLS") ) { return new TLSSyslogSenderImpl(); } else if (transport.equalsIgnoreCase("UDP") ){ return new...
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public IHEAuditor getAuditor(String className, boolean useContextAuditorRegistry) { return getAuditor(AuditorFactory.getAuditorClassForClassName(className),useContextAuditorRegistry); }
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public static XDSRegistryAuditor getAuditor() { AuditorModuleContext ctx = AuditorModuleContext.getContext(); return (XDSRegistryAuditor)ctx.getAuditor(XDSRegistryAuditor.class); }
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public void auditRegistryQueryEvent( RFC3881EventOutcomeCodes eventOutcome, String consumerUserId, String consumerUserName, String consumerIpAddress, String registryEndpointUri, String adhocQueryRequestPayload, String patientId) { if (!isAuditorEnabled()) { return; } auditQueryEvent(false, ...
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public void auditRegistryStoredQueryEvent( RFC3881EventOutcomeCodes eventOutcome, String consumerUserId, String consumerUserName, String consumerIpAddress, String registryEndpointUri, String storedQueryUUID, String adhocQueryRequestPayload, String homeCommunityId, String patientId, List<CodedValueType> ...
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protected void auditRegisterEvent( IHETransactionEventTypeCodes transaction, RFC3881EventOutcomeCodes eventOutcome, String repositoryUserId, String repositoryIpAddress, String userName, String registryEndpointUri, String submissionSetUniqueId, String patientId, List<CodedValueTy...
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private void fixKeyManagers() { // If the key manager factory is null, do not continue if (null == keyManagerFactory || null == keyManagerFactory.getKeyManagers()) { return; } KeyManager[] defaultKeyManagers = keyManagerFactory.getKeyManagers(); KeyManager[] newKeyMan...
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@Override public void init(FilterConfig filterConfig) throws ServletException { super.init(filterConfig); int reloadTime = readInt(filterConfig.getInitParameter(INIT_PARAM_RELOAD_TIME), 0); this.resetTime = readInt(filterConfig.getInitParameter(INIT_PARAM_RESET_TIME), resetTime); t...
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protected String generateCacheKeyForTheRequest(HttpServletRequest request) { StringBuilder cacheKey = new StringBuilder(); cacheKey.append(request.getRequestURI()); String[] keyAttributes = this.cacheKeyFormat.split(","); for (String attr : keyAttributes) { String keyAttr = a...
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protected void init() throws IOException { try { long lwmScn = _arrayFile.getLwmScn(); long hwmScn = _arrayFile.getHwmScn(); if (hwmScn < lwmScn) { throw new IOException(_arrayFile.getAbsolutePath() + " is corrupted: lwmScn=" + lwmScn + " hwmScn=" + hwmScn); ...
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private String chooseClientAliasForKey(String preferredAlias, String keyType, Principal[] issuers, Socket socket) { String[] aliases = getClientAliases(keyType, issuers); if (aliases != null && aliases.length > 0) { for (int i=0; i<aliases.length;i++) { if (preferredAlias.equals(aliases[i])) { return ...
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private static String simpleHashOf(String resourceRealPath) { if (resourceRealPath == null) return null; File resource = new File(resourceRealPath); if (!resource.exists()) return null; long lastModified = resource.lastModified(); long size = resource.length(); return Str...
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public static String getParentPath(String path) { if (path == null) return null; path = path.trim(); if (path.endsWith(PATH_ROOT) && path.length() > 1) { path = path.substring(0, path.length() - 1); } int lastIndex = path.lastIndexOf(PATH_ROOT); if (path.lengt...
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protected Socket createSocket(String host, int port) throws SocketException, UnknownHostException { Socket socket = null; int retries = 0; // Loop to get a connection or until we've exhausted number of retries Throwable cause = null; while (retries < CONTEXT.getConfig().getS...
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protected Socket createSocketFromFactory(SocketFactory factory, String host, int port) throws IOException { if (logger.isDebugEnabled()) { logger.debug("Connecting to " + host +" on port " + port + " (timeout: " + CONTEXT.getConfig().getConnectTimeout() + " ms) using factory "+ factory.getClass(...
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public boolean isLineOfCode(final String line) { if (line.length() < getIndicatorAreaPos() + 1) { return false; } /* Remove white space lines */ if (line.trim().length() == 0) { return false; } /* Remove comments and special lines */ if (...
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public String cleanLine(final String line) { String cleanedLine = extendedCleanLine(line); /* Right trim, no need to over burden the lexer with spaces */ cleanedLine = ("a" + cleanedLine).trim().substring(1); return cleanedLine; }
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protected boolean isArgument(final String fragment) { String s = fragment.trim(); if (s.length() > 0) { return s.charAt(s.length() - 1) != COBOL_DELIMITER; } return false; }
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public static ImageListener getImageListener(final ImageView view, final int defaultImageResId, final int errorImageResId) { return new ImageListener() { @Override public void onError(JusError error) { if (errorImageResId !...
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public ImageContainer get(String requestUrl, final ImageListener listener, final Object tag) { return get(requestUrl, listener, 0, 0, tag); }
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protected void onGetImageSuccess(String cacheKey, Bitmap response) { // cache the image that was fetched. imageCache.putBitmap(cacheKey, response); // remove the request from the list of in-flight requests. BatchedImageRequest request = inFlightRequests.remove(cacheKey); if (re...
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protected void onGetImageError(String cacheKey, JusError error) { // Notify the requesters that something failed via a null result. // Remove this request from the list of in-flight requests. BatchedImageRequest request = inFlightRequests.remove(cacheKey); if (request != null) { ...
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private void batchResponse(String cacheKey, BatchedImageRequest request) { batchedResponses.put(cacheKey, request); // If we don't already have a batch delivery runnable in flight, make a new one. // Note that this will be used to deliver responses to all callers in batchedResponses. if ...
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private static String getCacheKey(String url, int maxWidth, int maxHeight, ScaleType scaleType) { return "#W" + maxWidth + "#H" + maxHeight + "#S" + scaleType.ordinal() + url; }
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public static XDSSourceAuditor getAuditor() { AuditorModuleContext ctx = AuditorModuleContext.getContext(); return (XDSSourceAuditor)ctx.getAuditor(XDSSourceAuditor.class); }
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public void auditProvideAndRegisterDocumentSetEvent(RFC3881EventOutcomeCodes eventOutcome, String repositoryEndpointUri, String userName, String submissionSetUniqueId, String patientId) { if (!isAuditorEnabled()) { return; } auditProvideAndRegisterEvent( new IHETransactionEventTypeCodes...
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public void auditProvideAndRegisterDocumentSetBEvent(RFC3881EventOutcomeCodes eventOutcome, String repositoryEndpointUri, String userName, String submissionSetUniqueId, String patientId, List<CodedValueType> purposesOfUse, List<CodedValueType> userRoles) { if (!isAuditorEnab...
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protected void auditProvideAndRegisterEvent( IHETransactionEventTypeCodes transaction, RFC3881EventOutcomeCodes eventOutcome, String repositoryEndpointUri, String userName, String submissionSetUniqueId, String patientId, List<CodedValueType> purposesOfUse, List<CodedValueType> u...
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public void addNodeActiveParticipant(String userId, String altUserId, String userName, String networkId) { addActiveParticipant( userId, altUserId, userName, true, Collections.singletonList(new DICOMActiveParticipantRoleIdCodes.Application()), networkId); }
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public static String buildUrlQuery(String baseUrl, Map<String, String> params) { if (baseUrl.isEmpty() || params.isEmpty()) { return baseUrl; } else { String query = baseUrl; query += QUERY_STRING_SEPARATOR; for (String key : params.keySet()) { query += key; query += PAIR_SEPARATOR; query +...
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protected void setAuditMessageElements(EventIdentificationType eventId, ActiveParticipantType[] participants, AuditSourceIdentificationType[] sourceIds, ParticipantObjectIdentificationType[] objectIds) { AuditMessage auditMessage = getAuditMessage(); auditMessa...
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protected EventIdentificationType setEventIdentification( RFC3881EventOutcomeCodes outcome, RFC3881EventActionCodes action, CodedValueType id, CodedValueType[] type, List<CodedValueType> purposesOfUse) { EventIdentificationType eventBlock = new EventIdentification...
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protected ActiveParticipantType addActiveParticipant(String userID, String altUserID, String userName, Boolean userIsRequestor, List<CodedValueType> roleIdCodes, String networkAccessPointID, RFC3881NetworkAccessPointTypeCodes networkAccessPointTypeCode) { ...
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protected AuditSourceIdentificationType addAuditSourceIdentification(String sourceID, String enterpriseSiteID, RFC3881AuditSourceTypeCodes... typeCodes) { AuditSource...
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public ParticipantObjectIdentificationType addParticipantObjectIdentification(CodedValueType objectIDTypeCode, String objectName, byte[] objectQuery, List<TypeValuePairType> objectDetail, ...
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