code
stringlengths
73
34.1k
label
stringclasses
1 value
public static DMatrixRMaj insideSpan(DMatrixRMaj[] span , double min , double max , Random rand ) { DMatrixRMaj A = new DMatrixRMaj(span.length,1); DMatrixRMaj B = new DMatrixRMaj(span[0].getNumElements(),1); for( int i = 0; i < span.length; i++ ) { B.set(span[i]); doub...
java
public static DMatrixRMaj diagonal(int N , double min , double max , Random rand ) { return diagonal(N,N,min,max,rand); }
java
public static DMatrixRMaj diagonal(int numRows , int numCols , double min , double max , Random rand ) { if( max < min ) throw new IllegalArgumentException("The max must be >= the min"); DMatrixRMaj ret = new DMatrixRMaj(numRows,numCols); int N = Math.min(numRows,numCols); ...
java
public static DMatrixRMaj symmetricWithEigenvalues(int num, Random rand , double ...eigenvalues ) { DMatrixRMaj V = RandomMatrices_DDRM.orthogonal(num,num,rand); DMatrixRMaj D = CommonOps_DDRM.diag(eigenvalues); DMatrixRMaj temp = new DMatrixRMaj(num,num); CommonOps_DDRM.mult(V,D,temp)...
java
public static BMatrixRMaj randomBinary(int numRow , int numCol , Random rand ) { BMatrixRMaj mat = new BMatrixRMaj(numRow,numCol); setRandomB(mat, rand); return mat; }
java
public static DMatrixRMaj symmetric(int length, double min, double max, Random rand) { DMatrixRMaj A = new DMatrixRMaj(length,length); symmetric(A,min,max,rand); return A; }
java
public static void symmetric(DMatrixRMaj A, double min, double max, Random rand) { if( A.numRows != A.numCols ) throw new IllegalArgumentException("A must be a square matrix"); double range = max-min; int length = A.numRows; for( int i = 0; i < length; i++ ) { ...
java
public static DMatrixRMaj triangularUpper(int dimen , int hessenberg , double min , double max , Random rand ) { if( hessenberg < 0 ) throw new RuntimeException("hessenberg must be more than or equal to 0"); double range = max-min; DMatrixRMaj A = new DMatrixRMaj(dimen,dimen); ...
java
public double computeLikelihoodP() { double ret = 1.0; for( int i = 0; i < r.numRows; i++ ) { double a = r.get(i,0); ret *= Math.exp(-a*a/2.0); } return ret; }
java
@Override public boolean decompose(DMatrixRMaj orig) { if( orig.numCols != orig.numRows ) throw new IllegalArgumentException("Matrix must be square."); if( orig.numCols <= 0 ) return false; int N = orig.numRows; // compute a similar tridiagonal matrix ...
java
private boolean computeEigenValues() { // make a copy of the internal tridiagonal matrix data for later use diagSaved = helper.copyDiag(diagSaved); offSaved = helper.copyOff(offSaved); vector.setQ(null); vector.setFastEigenvalues(true); // extract the eigenvalues if( !...
java
protected void solveL(double[] vv) { int ii = 0; for( int i = 0; i < n; i++ ) { int ip = indx[i]; double sumReal = vv[ip*2]; double sumImg = vv[ip*2+1]; vv[ip*2] = vv[i*2]; vv[ip*2+1] = vv[i*2+1]; if( ii != 0 ) { // ...
java
public boolean decompose(DMatrixRMaj mat , int indexStart , int n ) { double m[] = mat.data; double el_ii; double div_el_ii=0; for( int i = 0; i < n; i++ ) { for( int j = i; j < n; j++ ) { double sum = m[indexStart+i*mat.numCols+j]; int iEl ...
java
public static List<int[]> createList( int N ) { int data[] = new int[ N ]; for( int i = 0; i < data.length; i++ ) { data[i] = -1; } List<int[]> ret = new ArrayList<int[]>(); createList(data,0,-1,ret); return ret; }
java
private static void createList( int data[], int k , int level , List<int[]> ret ) { data[k] = level; if( level < data.length-1 ) { for( int i = 0; i < data.length; i++ ) { if( data[i] == -1 ) { createList(data,i,level+1,ret); } ...
java
public int[] next() { boolean hasNewPerm = false; escape:while( level >= 0) { // boolean foundZero = false; for( int i = iter[level]; i < data.length; i = iter[level] ) { iter[level]++; if( data[i] == -1 ) { level++; ...
java
public static DMatrixSparseTriplet uniform(int numRows , int numCols , int nz_total , double min , double max , Random rand ) { // Create a list of all the possible element values int N = numCols*numRows; if( N < 0 ) throw new IllegalArg...
java
public static boolean decomposeQR_block_col( final int blockLength , final DSubmatrixD1 Y , final double gamma[] ) { int width = Y.col1-Y.col0; int height = Y.row1-Y.row0; int min = Math.min(wid...
java
public static void divideElementsCol(final int blockLength , final DSubmatrixD1 Y , final int col , final double val ) { final int width = Math.min(blockLength,Y.col1-Y.col0); final double dataY[] = Y.original.data; for( int i = Y.row0; i < Y.row1; i +=...
java
public static void multAdd_zeros(final int blockLength , final DSubmatrixD1 Y , final DSubmatrixD1 B , final DSubmatrixD1 C ) { int widthY = Y.col1 - Y.col0; for( int i = Y.row0; i < Y.row1; i += blockLength ) { i...
java
public static ManagerFunctions.InputN createMultTransA() { return (inputs, manager) -> { if( inputs.size() != 2 ) throw new RuntimeException("Two inputs required"); final Variable varA = inputs.get(0); final Variable varB = inputs.get(1); Operati...
java
public static DMatrixRMaj copyChangeRow(int order[] , DMatrixRMaj src , DMatrixRMaj dst ) { if( dst == null ) { dst = new DMatrixRMaj(src.numRows,src.numCols); } else if( src.numRows != dst.numRows || src.numCols != dst.numCols ) { throw new IllegalArgumentException("src and ...
java
public static DMatrixRMaj copyTriangle(DMatrixRMaj src , DMatrixRMaj dst , boolean upper ) { if( dst == null ) { dst = new DMatrixRMaj(src.numRows,src.numCols); } else if( src.numRows != dst.numRows || src.numCols != dst.numCols ) { throw new IllegalArgumentException("src and dst...
java
public static DMatrixRMaj[] splitIntoVectors(DMatrix1Row A , boolean column ) { int w = column ? A.numCols : A.numRows; int M = column ? A.numRows : 1; int N = column ? 1 : A.numCols; int o = Math.max(M,N); DMatrixRMaj[] ret = new DMatrixRMaj[w]; for( int i = 0; ...
java
public static double diagProd( DMatrix1Row T ) { double prod = 1.0; int N = Math.min(T.numRows,T.numCols); for( int i = 0; i < N; i++ ) { prod *= T.unsafe_get(i,i); } return prod; }
java
public static double elementSumSq( DMatrixD1 m ) { // minimize round off error double maxAbs = CommonOps_DDRM.elementMaxAbs(m); if( maxAbs == 0) return 0; double total = 0; int N = m.getNumElements(); for( int i = 0; i < N; i++ ) { doub...
java
public void init( double diag[] , double off[], int numCols ) { reset(numCols); this.diag = diag; this.off = off; }
java
public void reset( int N ) { this.N = N; this.diag = null; this.off = null; if( splits.length < N ) { splits = new int[N]; } numSplits = 0; x1 = 0; x2 = N-1; steps = numExceptional = lastExceptional = 0; this.Q = null; ...
java
protected boolean isZero( int index ) { double bottom = Math.abs(diag[index])+Math.abs(diag[index+1]); return( Math.abs(off[index]) <= bottom*UtilEjml.EPS); }
java
protected void createBulge( int x1 , double p , boolean byAngle ) { double a11 = diag[x1]; double a22 = diag[x1+1]; double a12 = off[x1]; double a23 = off[x1+1]; if( byAngle ) { c = Math.cos(p); s = Math.sin(p); c2 = c*c; s2 = s*s...
java
protected void eigenvalue2by2( int x1 ) { double a = diag[x1]; double b = off[x1]; double c = diag[x1+1]; // normalize to reduce overflow double absA = Math.abs(a); double absB = Math.abs(b); double absC = Math.abs(c); double scale = absA > absB ? absA :...
java
@Override public void solve(DMatrixRMaj B, DMatrixRMaj X) { X.reshape(blockA.numCols,B.numCols); blockB.reshape(B.numRows,B.numCols,false); blockX.reshape(X.numRows,X.numCols,false); MatrixOps_DDRB.convert(B,blockB); alg.solve(blockB,blockX); MatrixOps_DDRB.convert(...
java
@Override public void invert(DMatrixRMaj A_inv) { blockB.reshape(A_inv.numRows,A_inv.numCols,false); alg.invert(blockB); MatrixOps_DDRB.convert(blockB,A_inv); }
java
public void printMinors(int matrix[], int N, PrintStream stream) { this.N = N; this.stream = stream; // compute all the minors int index = 0; for( int i = 1; i <= N; i++ ) { for( int j = 1; j <= N; j++ , index++) { stream.print(" double m"+i+""...
java
@Override public boolean setA(DMatrixRBlock A) { if( A.numRows < A.numCols ) throw new IllegalArgumentException("Number of rows must be more than or equal to the number of columns. " + "Can't solve an underdetermined system."); if( !decomposer.decompose(A)) ...
java
@Override public void invert(DMatrixRBlock A_inv) { int M = Math.min(QR.numRows,QR.numCols); if( A_inv.numRows != M || A_inv.numCols != M ) throw new IllegalArgumentException("A_inv must be square an have dimension "+M); // Solve for A^-1 // Q*R*A^-1 = I // App...
java
public void perform() { for (int i = 0; i < operations.size(); i++) { operations.get(i).process(); } }
java
@Override public void setExpectedMaxSize( int numRows , int numCols ) { super.setExpectedMaxSize(numRows,numCols); // if the matrix that is being decomposed is smaller than the block we really don't // see the B matrix. if( numRows < blockWidth) B = new DMatrixRMaj(0,0);...
java
public static DMatrixSparseCSC convert(DMatrixSparseTriplet src , DMatrixSparseCSC dst , int hist[] ) { if( dst == null ) dst = new DMatrixSparseCSC(src.numRows, src.numCols , src.nz_length); else dst.reshape(src.numRows, src.numCols, src.nz_length); if( hist == null ) ...
java
protected void setupPivotInfo() { for( int col = 0; col < numCols; col++ ) { pivots[col] = col; double c[] = dataQR[col]; double norm = 0; for( int row = 0; row < numRows; row++ ) { double element = c[row]; norm += element*element; ...
java
protected void updateNorms( int j ) { boolean foundNegative = false; for( int col = j; col < numCols; col++ ) { double e = dataQR[col][j-1]; double v = normsCol[col] -= e*e; if( v < 0 ) { foundNegative = true; break; } ...
java
protected void swapColumns( int j ) { // find the column with the largest norm int largestIndex = j; double largestNorm = normsCol[j]; for( int col = j+1; col < numCols; col++ ) { double n = normsCol[col]; if( n > largestNorm ) { largestNorm = n; ...
java
public String getHiveExecutionEngine() { String executionEngine = hiveConfSystemOverride.get(HiveConf.ConfVars.HIVE_EXECUTION_ENGINE.varname); return executionEngine == null ? HiveConf.ConfVars.HIVE_EXECUTION_ENGINE.getDefaultValue() : executionEngine; }
java
public void override(HiveRunnerConfig hiveRunnerConfig) { config.putAll(hiveRunnerConfig.config); hiveConfSystemOverride.putAll(hiveRunnerConfig.hiveConfSystemOverride); }
java
public static Optional<Field> getField(Class<?> type, final String fieldName) { Optional<Field> field = Iterables.tryFind(newArrayList(type.getDeclaredFields()), havingFieldName(fieldName)); if (!field.isPresent() && type.getSuperclass() != null){ field = getField(type.getSuperclass(), fiel...
java
public void init(Map<String, String> testConfig, Map<String, String> hiveVars) { context.init(); HiveConf hiveConf = context.getHiveConf(); // merge test case properties with hive conf before HiveServer is started. for (Map.Entry<String, String> property : testConfig.entrySet()) { ...
java
public InsertIntoTable addRowsFromDelimited(File file, String delimiter, Object nullValue) { builder.addRowsFromDelimited(file, delimiter, nullValue); return this; }
java
public InsertIntoTable addRowsFrom(File file, FileParser fileParser) { builder.addRowsFrom(file, fileParser); return this; }
java
public InsertIntoTable set(String name, Object value) { builder.set(name, value); return this; }
java
public HiveShellContainer evaluateStatement(List<? extends Script> scripts, Object target, TemporaryFolder temporaryFolder, Statement base) throws Throwable { container = null; FileUtil.setPermission(temporaryFolder.getRoot(), FsPermission.getDirDefault()); try { LOGGER.info("Setting...
java
private HiveShellContainer createHiveServerContainer(final List<? extends Script> scripts, final Object testCase, TemporaryFolder baseDir) throws IOException { HiveServerContext context = new StandaloneHiveServerContext(baseDir, config); final HiveServerContainer hiveTestHarness = new HiveSer...
java
public static Command newInsert(Object object, String outIdentifier) { return getCommandFactoryProvider().newInsert( object, outIdentifier ); }
java
public static Command newInsert(Object object, String outIdentifier, boolean returnObject, String entryPoint ) { return getCommandFactoryProvider().newInsert( object, ...
java
public static Command newInsertElements(Collection objects, String outIdentifier, boolean returnObject, String entryPoint) { return getCommandFactoryProvider().newInsertElements( objects, outIdentifier, returnObject, entryPoint ); }
java
public static Command newSetGlobal(String identifier, Object object) { return getCommandFactoryProvider().newSetGlobal( identifier, object ); }
java
public static Command newGetGlobal(String identifier, String outIdentifier) { return getCommandFactoryProvider().newGetGlobal( identifier, outIdentifier ); }
java
public static Command newStartProcess(String processId, Map<String, Object> parameters) { return getCommandFactoryProvider().newStartProcess( processId, parameters ); }
java
public static Command newQuery(String identifier, String name) { return getCommandFactoryProvider().newQuery( identifier, name ); }
java
public static Command newQuery(String identifier, String name, Object[] arguments) { return getCommandFactoryProvider().newQuery( identifier, name, ...
java
public static KnowledgeBuilderConfiguration newKnowledgeBuilderConfiguration(Properties properties, ClassLoader... classLoaders) { return FactoryServiceHolder.factoryService.newKnowledgeBuilderConfiguration( properties, classLoader...
java
public static synchronized void unregister(final String serviceName, final Callable<Class< ? >> factory) { if ( serviceName == null ) { throw new IllegalArgumentException( "serviceName cannot be null" ); } if ( factories != null ) { ...
java
public static synchronized void register(final String serviceName, final Callable<Class< ? >> factory) { if ( serviceName == null ) { throw new IllegalArgumentException( "serviceName cannot be null" ); } if ( factory != null ) { ...
java
public static synchronized Class< ? > locate(final String serviceName) { if ( serviceName == null ) { throw new IllegalArgumentException( "serviceName cannot be null" ); } if ( factories != null ) { List<Callable<Class< ? >>> l = factories.get( serviceName ); ...
java
public static synchronized List<Class< ? >> locateAll(final String serviceName) { if ( serviceName == null ) { throw new IllegalArgumentException( "serviceName cannot be null" ); } List<Class< ? >> classes = new ArrayList<Class< ? >>(); if ( factories != null ) { ...
java
public static KieRuntimeLogger newFileLogger(KieRuntimeEventManager session, String fileName) { return getKnowledgeRuntimeLoggerProvider().newFileLogger( session, fileName ); }
java
public static String toXml(DeploymentDescriptor descriptor) { try { Marshaller marshaller = getContext().createMarshaller(); marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE); marshaller.setProperty(Marshaller.JAXB_SCHEMA_LOCATION, "http://www.jboss.org/...
java
public static List<ObjectModelResolver> getResolvers() { if (resolvers == null) { synchronized (serviceLoader) { if (resolvers == null) { List<ObjectModelResolver> foundResolvers = new ArrayList<ObjectModelResolver>(); for (ObjectModelResolver ...
java
public static ObjectModelResolver get(String resolverId) { List<ObjectModelResolver> resolvers = getResolvers(); for (ObjectModelResolver resolver : resolvers) { if (resolver.accept(resolverId)) { return resolver; } } return null; }
java
void reset() { if (!hasStopped) { throw new IllegalStateException("cannot reset a non stopped queue poller"); } hasStopped = false; run = true; lastLoop = null; loop = new Semaphore(0); }
java
void releaseResources(JobInstance ji) { this.peremption.remove(ji.getId()); this.actualNbThread.decrementAndGet(); for (ResourceManagerBase rm : this.resourceManagers) { rm.releaseResource(ji); } if (!this.strictPollingPeriod) { // Fo...
java
public static JqmEngineOperations startEngine(String name, JqmEngineHandler handler) { JqmEngine e = new JqmEngine(); e.start(name, handler); return e; }
java
@Override public Response toResponse(ErrorDto e) { // String type = headers.getContentType() == null ? MediaType.APPLICATION_JSON : headers.getContentType(); return Response.status(e.httpStatus).entity(e).type(MediaType.APPLICATION_JSON).build(); }
java
public static JqmClient getClient(String name, Properties p, boolean cached) { Properties p2 = null; if (binder == null) { bind(); } if (p == null) { p2 = props; } else { p2 = new Properties(props); ...
java
public static ScheduledJob create(String cronExpression) { ScheduledJob res = new ScheduledJob(); res.cronExpression = cronExpression; return res; }
java
static void export(String path, String queueName, DbConn cnx) throws JqmXmlException { // Argument tests if (queueName == null) { throw new IllegalArgumentException("queue name cannot be null"); } if (cnx == null) { throw new IllegalArgumentExc...
java
static void createMessage(String textMessage, JobInstance jobInstance, DbConn cnx) { cnx.runUpdate("message_insert", jobInstance.getId(), textMessage); }
java
static int createDeliverable(String path, String originalFileName, String fileFamily, Integer jobId, DbConn cnx) { QueryResult qr = cnx.runUpdate("deliverable_insert", fileFamily, path, jobId, originalFileName, UUID.randomUUID().toString()); return qr.getGeneratedId(); }
java
static void initSingleParam(String key, String initValue, DbConn cnx) { try { cnx.runSelectSingle("globalprm_select_by_key", 2, String.class, key); return; } catch (NoResultException e) { GlobalParameter.create(cnx, key, initValue); ...
java
static void setSingleParam(String key, String value, DbConn cnx) { QueryResult r = cnx.runUpdate("globalprm_update_value_by_key", value, key); if (r.nbUpdated == 0) { cnx.runUpdate("globalprm_insert", key, value); } cnx.commit(); }
java
public void close() { if (transac_open) { try { this._cnx.rollback(); } catch (Exception e) { // Ignore. } } for (Statement s : toClose) { closeQuietly(s); ...
java
void killAll() { for (RjiRegistration reg : this.instancesById.values().toArray(new RjiRegistration[] {})) { reg.rji.handleInstruction(Instruction.KILL); } }
java
@Override public void setJobQueue(int jobId, Queue queue) { JqmClientFactory.getClient().setJobQueue(jobId, queue); }
java
@Override public List<JobInstance> getJobs(Query query) { return JqmClientFactory.getClient().getJobs(query); }
java
@Override public void stop() { synchronized (killHook) { jqmlogger.info("JQM engine " + this.node.getName() + " has received a stop order"); // Kill hook should be removed try { if (!Runtime.getRuntime().removeShutdownHook(killHook...
java
private void purgeDeadJobInstances(DbConn cnx, Node node) { for (JobInstance ji : JobInstance.select(cnx, "ji_select_by_node", node.getId())) { try { cnx.runSelectSingle("history_select_state_by_id", String.class, ji.getId()); } catch (...
java
private URL[] getClasspath(JobInstance ji, JobRunnerCallback cb) throws JqmPayloadException { switch (ji.getJD().getPathType()) { case MAVEN: return mavenResolver.resolve(ji); case MEMORY: return new URL[0]; case FS: default: return...
java
public static int forceCleanup(Thread t) { int i = 0; for (Map.Entry<ConnectionPool, Set<ConnPair>> e : conns.entrySet()) { for (ConnPair c : e.getValue()) { if (c.thread.equals(t)) { try { ...
java
public static GlobalParameter create(DbConn cnx, String key, String value) { QueryResult r = cnx.runUpdate("globalprm_insert", key, value); GlobalParameter res = new GlobalParameter(); res.id = r.getGeneratedId(); res.key = key; res.value = value; return res; }
java
public static String getParameter(DbConn cnx, String key, String defaultValue) { try { return cnx.runSelectSingle("globalprm_select_by_key", 3, String.class, key); } catch (NoResultException e) { return defaultValue; } }
java
static JndiContext createJndiContext() throws NamingException { try { if (!NamingManager.hasInitialContextFactoryBuilder()) { JndiContext ctx = new JndiContext(); NamingManager.setInitialContextFactoryBuilder(ctx); return ctx; ...
java
private static ClassLoader getParentCl() { try { Method m = ClassLoader.class.getMethod("getPlatformClassLoader"); return (ClassLoader) m.invoke(null); } catch (NoSuchMethodException e) { // Java < 9, just use the bootstrap CL. ...
java
public static Properties loadProperties(String[] filesToLoad) { Properties p = new Properties(); InputStream fis = null; for (String path : filesToLoad) { try { fis = Db.class.getClassLoader().getResourceAsStream(path); if (fis ...
java
private void init(boolean upgrade) { initAdapter(); initQueries(); if (upgrade) { dbUpgrade(); } // First contact with the DB is version checking (if no connection opened by pool). // If DB is in wrong version or not available, just wait for it to...
java
private void dbUpgrade() { DbConn cnx = this.getConn(); Map<String, Object> rs = null; int db_schema_version = 0; try { rs = cnx.runSelectSingleRow("version_select_latest"); db_schema_version = (Integer) rs.get("VERSION_D1"); } catch (E...
java
private void initAdapter() { Connection tmp = null; DatabaseMetaData meta = null; try { tmp = _ds.getConnection(); meta = tmp.getMetaData(); product = meta.getDatabaseProductName().toLowerCase(); } catch (SQLException e) { ...
java
public DbConn getConn() { Connection cnx = null; try { Thread.interrupted(); // this is VERY sad. Needed for Oracle driver which otherwise fails spectacularly. cnx = _ds.getConnection(); if (cnx.getAutoCommit()) { cnx.setAutoCom...
java
String getQuery(String key) { String res = this.adapter.getSqlText(key); if (res == null) { throw new DatabaseException("Query " + key + " does not exist"); } return res; }
java
public RuntimeParameter addParameter(String key, String value) { RuntimeParameter jp = new RuntimeParameter(); jp.setJi(this.getId()); jp.setKey(key); jp.setValue(value); return jp; }
java
void endOfRunDb() { DbConn cnx = null; try { cnx = Helpers.getNewDbSession(); // Done: put inside history & remove instance from queue. History.create(cnx, this.ji, this.resultStatus, endDate); jqmlogger.trace("An History was just created for...
java
private Integer highlanderMode(JobDef jd, DbConn cnx) { if (!jd.isHighlander()) { return null; } try { Integer existing = cnx.runSelectSingle("ji_select_existing_highlander", Integer.class, jd.getId()); return existing; } c...
java