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public static void load(Class<?> restrictionClass) { if(MASTER_CACHE == null) { initialize(); } if(MASTER_CACHE.isEmpty()) { return; } Iterator<Class<?>> iter = MASTER_CACHE.iterator(); while(iter.hasNext()) { Class<?> clazz = iter.next(); // Skip other classes. if(...
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private static int comparePackageClass(Class<?> o1, Class<?> o2) { return o1.getPackage() == o2.getPackage() ? // o1.getCanonicalName().compareTo(o2.getCanonicalName()) // : o1.getPackage() == null ? -1 : o2.getPackage() == null ? +1 // : o1.getPackage().getName().compareTo(o2.getPackage...
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private static int classPriority(Class<?> o1) { Priority p = o1.getAnnotation(Priority.class); if(p == null) { Class<?> pa = o1.getDeclaringClass(); p = (pa != null) ? pa.getAnnotation(Priority.class) : null; } return p != null ? p.value() : Priority.DEFAULT; }
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public int nextIndex(int weight) { if(used == parent.length) { int nsize = used + (used >> 1); this.weight = Arrays.copyOf(this.weight, nsize); this.parent = Arrays.copyOf(this.parent, nsize); } this.weight[used] = weight; this.parent[used] = used; return used++; }
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public int find(int cur) { assert (cur >= 0 && cur < parent.length); int p = parent[cur], tmp; while(cur != p) { tmp = p; p = parent[cur] = parent[p]; // Perform simple path compression. cur = tmp; } return cur; }
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public int union(int first, int second) { int firstComponent = find(first), secondComponent = find(second); if(firstComponent == secondComponent) { return firstComponent; } final int w1 = weight[firstComponent], w2 = weight[secondComponent]; if(w1 > w2) { parent[secondComponent] = firstC...
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public IntList getRoots() { IntList roots = new IntArrayList(); for(int i = 0; i < used; i++) { // roots or one element in component if(parent[i] == i) { roots.add(i); } } return roots; }
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public int growSuperNode() { if(getNumEntries() < getCapacity()) { throw new IllegalStateException("This node is not yet overflowing (only " + getNumEntries() + " of " + getCapacity() + " entries)"); } Entry[] old_nodes = super.entries.clone(); assert old_nodes[old_nodes.length - 1] != null; s...
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public <T extends AbstractXTree<N>> void readSuperNode(ObjectInput in, T tree) throws IOException, ClassNotFoundException { readExternal(in); if(capacity_to_be_filled <= 0 || !isSuperNode()) { throw new IllegalStateException("This node does not appear to be a supernode"); } if(isLeaf) { thro...
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public static int compare(DBIDRef id1, DBIDRef id2) { return DBIDFactory.FACTORY.compare(id1, id2); }
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public static boolean equal(DBIDRef id1, DBIDRef id2) { return DBIDFactory.FACTORY.equal(id1, id2); }
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public static DBID deref(DBIDRef ref) { return ref instanceof DBID ? (DBID) ref : importInteger(ref.internalGetIndex()); }
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public static ModifiableDBIDs union(DBIDs ids1, DBIDs ids2) { ModifiableDBIDs result = DBIDUtil.newHashSet(Math.max(ids1.size(), ids2.size())); result.addDBIDs(ids1); result.addDBIDs(ids2); return result; }
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public static ModifiableDBIDs difference(DBIDs ids1, DBIDs ids2) { ModifiableDBIDs result = DBIDUtil.newHashSet(ids1); result.removeDBIDs(ids2); return result; }
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public static ArrayDBIDs ensureArray(DBIDs ids) { return ids instanceof ArrayDBIDs ? (ArrayDBIDs) ids : newArray(ids); }
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public static SetDBIDs ensureSet(DBIDs ids) { return ids instanceof SetDBIDs ? (SetDBIDs) ids : newHashSet(ids); }
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public static ModifiableDBIDs ensureModifiable(DBIDs ids) { return ids instanceof ModifiableDBIDs ? (ModifiableDBIDs) ids : // ids instanceof HashSetDBIDs ? newHashSet(ids) : newArray(ids); }
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public static DBIDPair newPair(DBIDRef id1, DBIDRef id2) { return DBIDFactory.FACTORY.newPair(id1, id2); }
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public static DoubleDBIDPair newPair(double val, DBIDRef id) { return DBIDFactory.FACTORY.newPair(val, id); }
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public static void sort(int[] data, Comparator<? super DBIDRef> comp) { sort(data, 0, data.length, comp); }
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private static int compare(IntegerDBIDVar i1, int p1, IntegerDBIDVar i2, int p2, Comparator<? super DBIDRef> comp) { i1.internalSetIndex(p1); i2.internalSetIndex(p2); return comp.compare(i1, i2); }
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@Override protected int computeHeight() { N node = getRoot(); int tHeight = 1; // compute height while(!node.isLeaf() && node.getNumEntries() != 0) { SpatialEntry entry = node.getEntry(0); node = getNode(entry); tHeight++; } return tHeight; }
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public long commit() throws IOException { final PageFile<N> file = super.getFile(); if(!(file instanceof PersistentPageFile)) { throw new IllegalStateException("Trying to commit a non-persistent XTree"); } long npid = file.getNextPageID(); XTreeHeader ph = (XTreeHeader) ((PersistentPageFile<?>...
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public void setExpanded(SpatialEntry entry1, SpatialEntry entry2) { IntSet exp1 = expanded.get(getPageID(entry1)); if(exp1 == null) { exp1 = new IntOpenHashSet(); expanded.put(getPageID(entry1), exp1); } exp1.add(getPageID(entry2)); }
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public IntSet getExpanded(SpatialEntry entry) { IntSet exp = expanded.get(getPageID(entry)); return (exp != null) ? exp : IntSets.EMPTY_SET; }
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public void increment(double coord, double val) { int bin = getBinNr(coord); if (bin < 0) { if (size - bin > data.length) { // Reallocate. TODO: use an arraylist-like grow strategy! double[] tmpdata = new double[growSize(data.length, size - bin)]; System.arraycopy(data, 0, tmpdata,...
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public double get(double coord) { int bin = getBinNr(coord); return (bin < 0 || bin >= size) ? 0 : data[bin]; }
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public Assignment update(Border border) { Arrays.sort(cs); int j = 1; boolean found = (cs[0].core == border.core); for(int i = 1; i < cs.length; i++) { if(cs[i].core != cs[i - 1].core) { cs[j++] = cs[i]; } found |= (cs[i].core == border.core); } if(found) { if(j =...
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public Core getCore() { Core a = cs[0].core; for(int i = 1; i < cs.length; i++) { Core v = cs[i].core; a = a.num > v.num ? a : v; // max, of negative values } return a; }
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protected int currentCluster(List<? extends ModifiableDBIDs> clusters, DBIDRef id) { for(int i = 0; i < k; i++) { if(clusters.get(i).contains(id)) { return i; } } return -1; }
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protected void computeINFLO(Relation<O> relation, ModifiableDBIDs pruned, KNNQuery<O> knnq, WritableDataStore<ModifiableDBIDs> rNNminuskNNs, WritableDoubleDataStore inflos, DoubleMinMax inflominmax) { FiniteProgress prog = LOG.isVerbose() ? new FiniteProgress("Computing INFLOs", relation.size(), LOG) : null; Ha...
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public OutlierResult run(Database database, Relation<O> relation) { // Get the query functions: DistanceQuery<O> dq = database.getDistanceQuery(relation, getDistanceFunction()); KNNQuery<O> knnq = database.getKNNQuery(dq, k); // Get the objects to process, and a data storage for counting and output: ...
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public static Icon getStockIcon(String name) { SoftReference<Icon> ref = iconcache.get(name); if(ref != null) { Icon icon = ref.get(); if(icon != null) { return icon; } } java.net.URL imgURL = StockIcon.class.getResource(name + ".png"); if(imgURL != null) { Icon icon ...
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@Override public void initializeFromFile(TreeIndexHeader header, PageFile<FlatRStarTreeNode> file) { super.initializeFromFile(header, file); // reconstruct root int nextPageID = file.getNextPageID(); dirCapacity = nextPageID; root = createNewDirectoryNode(); for(int i = 1; i < nextPageID; i++...
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protected Node bulkConstruct(DBIDRef cur, int maxScale, double parentDist, ModifiableDoubleDBIDList elems) { assert (!elems.contains(cur)); final double max = maxDistance(elems); final int scale = Math.min(distToScale(max) - 1, maxScale); final int nextScale = scale - 1; // Leaf node, because points...
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@Override public double getWeight(double distance, double max, double stddev) { if(max <= 0) { return 1.0; } double relativedistance = distance / max; return 1.0 - 0.9 * relativedistance * relativedistance; }
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public double maxDist(SpatialComparable mbr1, SpatialComparable mbr2) { final int dim1 = mbr1.getDimensionality(), dim2 = mbr2.getDimensionality(); final int mindim = dim1 < dim2 ? dim1 : dim2; double agg = 0.; for(int d = 0; d < mindim; d++) { double d1 = mbr1.getMax(d) - mbr2.getMin(d); d...
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public synchronized void updateFromTrackParameters(TrackParameters track) { parameters.clear(); for(TrackedParameter p : track.getAllParameters()) { Parameter<?> option = p.getParameter(); String value = null; if(option.isDefined()) { if(option.tookDefaultValue()) { value = D...
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public synchronized void addParameter(Parameter<?> option, String value, int bits, int depth) { parameters.add(new Node(option, value, bits, depth)); }
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public static List<Clustering<? extends Model>> getClusteringResults(Result r) { if(r instanceof Clustering<?>) { List<Clustering<?>> crs = new ArrayList<>(1); crs.add((Clustering<?>) r); return crs; } if(r instanceof HierarchicalResult) { return ResultUtil.filterResults(((Hierarchic...
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private static double[] randomLatitudeLongitude(Random r) { // Make marginally more realistic looking data by non-uniformly sampling // latitude, since Earth is a sphere, and there is not much at the poles double lat = Math.pow(1. - r.nextDouble() * 2., 2) / 2. * 180; double lng = (.5 - r.nextDouble()) ...
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@Override public double distance(NumberVector v1, NumberVector v2) { return 1 - Math.abs(PearsonCorrelation.coefficient(v1, v2)); }
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private long inverse(double current) { // Represent to base b. short[] digits = new short[maxi]; for(int j = 0; j < maxi; j++) { current *= base; digits[j] = (short) current; current -= digits[j]; if(current <= 1e-10) { break; } } long inv = 0; for(int j = m...
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private double radicalInverse(long i) { double digit = 1.0 / (double) base; double radical = digit; double inverse = 0.0; while(i > 0) { inverse += digit * (double) (i % base); digit *= radical; i /= base; } return inverse; }
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private double nextRadicalInverse() { counter++; // Do at most MAXFAST appromate steps if(counter >= MAXFAST) { counter = 0; inverse += MAXFAST; current = radicalInverse(inverse); return current; } // Fast approximation: double nextInverse = current + invbase; if(next...
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public String dimensonsToString(String sep) { StringBuilder result = new StringBuilder(100).append('['); for(int dim = BitsUtil.nextSetBit(dimensions, 0); dim >= 0; dim = BitsUtil.nextSetBit(dimensions, dim + 1)) { result.append(dim + 1).append(sep); } if(result.length() > sep.length()) { // Un-ap...
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public boolean isSubspace(Subspace subspace) { return this.dimensionality <= subspace.dimensionality && // BitsUtil.intersectionSize(dimensions, subspace.dimensions) == dimensionality; }
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protected <E extends SpatialComparable, A> double computeOverlap(A entries, ArrayAdapter<E, A> getter, long[] assign) { ModifiableHyperBoundingBox mbr1 = null, mbr2 = null; for(int i = 0; i < getter.size(entries); i++) { E e = getter.get(entries, i); if(BitsUtil.get(assign, i)) { if(mbr1 == ...
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private void binarySplitSort(List<? extends SpatialComparable> objs, final int start, final int end, int depth, final int numdim, int[] dims, Sorter comp) { final int mid = start + ((end - start) >>> 1); // Make invariant comp.setDimension(dims != null ? dims[depth] : depth); QuickSelect.quickSelect(obj...
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public static Element svgElement(Document document, String name) { return document.createElementNS(SVGConstants.SVG_NAMESPACE_URI, name); }
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public static void setStyle(Element el, String d) { el.setAttribute(SVGConstants.SVG_STYLE_ATTRIBUTE, d); }
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public static void addCSSClass(Element e, String cssclass) { String oldval = e.getAttribute(SVGConstants.SVG_CLASS_ATTRIBUTE); if(oldval == null || oldval.length() == 0) { setAtt(e, SVGConstants.SVG_CLASS_ATTRIBUTE, cssclass); return; } String[] classes = oldval.split(" "); for(String c ...
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public static void removeCSSClass(Element e, String cssclass) { String oldval = e.getAttribute(SVGConstants.SVG_CLASS_ATTRIBUTE); if(oldval == null) { return; } String[] classes = oldval.split(" "); if(classes.length == 1) { if(cssclass.equals(classes[0])) { e.removeAttribute(SVG...
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public static Element makeStyleElement(Document document) { Element style = SVGUtil.svgElement(document, SVGConstants.SVG_STYLE_TAG); style.setAttribute(SVGConstants.SVG_TYPE_ATTRIBUTE, SVGConstants.CSS_MIME_TYPE); return style; }
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public static Element svgRect(Document document, double x, double y, double w, double h) { Element rect = SVGUtil.svgElement(document, SVGConstants.SVG_RECT_TAG); SVGUtil.setAtt(rect, SVGConstants.SVG_X_ATTRIBUTE, x); SVGUtil.setAtt(rect, SVGConstants.SVG_Y_ATTRIBUTE, y); SVGUtil.setAtt(rect, SVGConstan...
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public static Element svgCircle(Document document, double cx, double cy, double r) { Element circ = SVGUtil.svgElement(document, SVGConstants.SVG_CIRCLE_TAG); SVGUtil.setAtt(circ, SVGConstants.SVG_CX_ATTRIBUTE, cx); SVGUtil.setAtt(circ, SVGConstants.SVG_CY_ATTRIBUTE, cy); SVGUtil.setAtt(circ, SVGConstan...
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public static Element svgLine(Document document, double x1, double y1, double x2, double y2) { Element line = SVGUtil.svgElement(document, SVGConstants.SVG_LINE_TAG); SVGUtil.setAtt(line, SVGConstants.SVG_X1_ATTRIBUTE, x1); SVGUtil.setAtt(line, SVGConstants.SVG_Y1_ATTRIBUTE, y1); SVGUtil.setAtt(line, SV...
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public static Color stringToColor(String str) { int icol = SVG_COLOR_NAMES.getInt(str.toLowerCase()); if(icol != NO_VALUE) { return new Color(icol, false); } return colorLookupStylesheet.stringToColor(str); }
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public static String colorToString(int col) { final char[] buf = new char[] { '#', 'X', 'X', 'X', 'X', 'X', 'X' }; for(int i = 6; i > 0; i--) { final int v = (col & 0xF); buf[i] = (char) ((v < 10) ? ('0' + v) : ('a' + v - 10)); col >>>= 4; } return new String(buf); }
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public static SVGPoint elementCoordinatesFromEvent(Document doc, Element tag, Event evt) { try { DOMMouseEvent gnme = (DOMMouseEvent) evt; SVGMatrix mat = ((SVGLocatable) tag).getScreenCTM(); SVGMatrix imat = mat.inverse(); SVGPoint cPt = ((SVGDocument) doc).getRootElement().createSVGPoint()...
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public static void removeLastChild(Element tag) { final Node last = tag.getLastChild(); if(last != null) { tag.removeChild(last); } }
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public static void removeFromParent(Element elem) { if(elem != null && elem.getParentNode() != null) { elem.getParentNode().removeChild(elem); } }
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public static Element svgCircleSegment(SVGPlot svgp, double centerx, double centery, double angleStart, double angleDelta, double innerRadius, double outerRadius) { final DoubleWrapper tmp = new DoubleWrapper(); // To return cosine double sin1st = FastMath.sinAndCos(angleStart, tmp); double cos1st = tmp.val...
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protected WritableDoubleDataStore computeCoreDists(DBIDs ids, KNNQuery<O> knnQ, int minPts) { final Logging LOG = getLogger(); final WritableDoubleDataStore coredists = DataStoreUtil.makeDoubleStorage(ids, DataStoreFactory.HINT_HOT | DataStoreFactory.HINT_DB); FiniteProgress cprog = LOG.isVerbose() ? new Fi...
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protected void convertToPointerRepresentation(ArrayDBIDs ids, DoubleLongHeap heap, WritableDBIDDataStore pi, WritableDoubleDataStore lambda) { final Logging LOG = getLogger(); // Initialize parent array: for(DBIDArrayIter iter = ids.iter(); iter.valid(); iter.advance()) { pi.put(iter, iter); // Initia...
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private void updateHeap(final double distance, final int iid) { final double prevdist = kdist; final int previd = heap.peekValue(); heap.replaceTopElement(distance, iid); kdist = heap.peekKey(); // If the kdist improved, zap ties. if(kdist < prevdist) { numties = 0; } else { ...
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private void addToTies(int id) { if(ties.length == numties) { ties = Arrays.copyOf(ties, (ties.length << 1) + 1); // grow. } ties[numties] = id; ++numties; }
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public static int numberOfFreeParameters(Relation<? extends NumberVector> relation, Clustering<? extends MeanModel> clustering) { // number of clusters int m = clustering.getAllClusters().size(); // num_ctrs // dimensionality of data points int dim = RelationUtil.dimensionality(relation); // num_dims ...
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protected void dumpClusteringOutput(PrintStream writer, ResultHierarchy hierarchy, Clustering<?> c) { DBIDRange ids = null; for(It<Relation<?>> iter = hierarchy.iterParents(c).filter(Relation.class); iter.valid(); iter.advance()) { DBIDs pids = iter.get().getDBIDs(); if(pids instanceof DBIDRange) { ...
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public <F extends NumberVector> F getMeanVector(Relation<? extends F> relation) { return RelationUtil.getNumberVectorFactory(relation).newNumberVector(mean); }
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public void reset() { Arrays.fill(mean, 0.); Arrays.fill(nmea, 0.); if(elements != null) { for(int i = 0; i < elements.length; i++) { Arrays.fill(elements[i], 0.); } } else { elements = new double[mean.length][mean.length]; } wsum = 0.; }
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public static CovarianceMatrix make(Relation<? extends NumberVector> relation) { int dim = RelationUtil.dimensionality(relation); CovarianceMatrix c = new CovarianceMatrix(dim); double[] mean = c.mean; int count = 0; // Compute mean first: for(DBIDIter iditer = relation.iterDBIDs(); iditer.valid...
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@Override public StringBuilder appendToBuffer(StringBuilder buf) { String processedString = Integer.toString(getProcessed()); int percentage = (int) (getProcessed() * 100.0 / total); buf.append(getTask()); buf.append(": "); for(int i = 0; i < totalLength - processedString.length(); i++) { bu...
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public void ensureCompleted(Logging logger) { if(!isComplete()) { logger.warning("Progress had not completed automatically as expected: " + getProcessed() + "/" + total, new Throwable()); setProcessed(getTotal()); logger.progress(this); } }
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private void clusterData(DBIDs ids, RangeQuery<O> rnnQuery, WritableDoubleDataStore radii, WritableDataStore<ModifiableDBIDs> labels) { FiniteProgress clustProg = LOG.isVerbose() ? new FiniteProgress("Density-Based Clustering", ids.size(), LOG) : null; // Iterate over all objects for(DBIDIter iter = ids.ite...
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private int updateSizes(DBIDs ids, WritableDataStore<ModifiableDBIDs> labels, WritableIntegerDataStore newSizes) { // to count the unclustered all over int countUnmerged = 0; for(DBIDIter iter = ids.iter(); iter.valid(); iter.advance()) { // checking the point's new cluster size after the clustering s...
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public PointerHierarchyRepresentationResult run(Database database, Relation<O> relation) { DBIDs ids = relation.getDBIDs(); WritableDBIDDataStore pi = DataStoreUtil.makeDBIDStorage(ids, DataStoreFactory.HINT_HOT | DataStoreFactory.HINT_STATIC); WritableDoubleDataStore lambda = DataStoreUtil.makeDoubleStorag...
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protected void process(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) { slinkstep3(id, it, n, pi, lambda, m); slinkstep4(id, it, n, pi, lambda); }
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public void add(DBIDRef id, double reach, DBIDRef pre) { ids.add(id); reachability.putDouble(id, reach); if(pre == null || pre instanceof DBIDVar && !((DBIDVar) pre).isSet()) { return; } predecessor.putDBID(id, pre); }
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@Override public ArrayModifiableDBIDs order(DBIDs ids) { ArrayModifiableDBIDs res = DBIDUtil.newArray(ids.size()); for(DBIDIter it = this.ids.iter(); it.valid(); it.advance()) { if(ids.contains(it)) { res.add(it); } } return res; }
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public void getPredecessor(DBIDRef id, DBIDVar out) { if(predecessor == null) { out.unset(); return; } predecessor.assignVar(id, out); }
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public OutlierResult run(Database database, Relation<O> relation) { StepProgress stepprog = LOG.isVerbose() ? new StepProgress("COF", 3) : null; DistanceQuery<O> dq = database.getDistanceQuery(relation, getDistanceFunction()); LOG.beginStep(stepprog, 1, "Materializing COF neighborhoods."); KNNQuery<O> k...
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private void computeCOFScores(KNNQuery<O> knnq, DBIDs ids, DoubleDataStore acds, WritableDoubleDataStore cofs, DoubleMinMax cofminmax) { FiniteProgress progressCOFs = LOG.isVerbose() ? new FiniteProgress("COF for objects", ids.size(), LOG) : null; for(DBIDIter iter = ids.iter(); iter.valid(); iter.advance()) { ...
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public void invokeLater(Runnable r) { queue.add(r); synchronized(this) { if(synchronizer == null) { runQueue(); } else { synchronizer.activate(); } } }
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public void runQueue() { synchronized(sync) { while(!queue.isEmpty()) { Runnable r = queue.poll(); if(r != null) { try { r.run(); } catch(Exception e) { // Alternatively, we could allow the specification of exception // handlers...
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public synchronized void synchronizeWith(UpdateSynchronizer newsync) { // LoggingUtil.warning("Synchronizing: " + sync + " " + newsync, new // Throwable()); if(synchronizer == newsync) { LoggingUtil.warning("Double-synced to the same plot!", new Throwable()); return; } if(synchronizer !=...
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public synchronized void unsynchronizeWith(UpdateSynchronizer oldsync) { if(synchronizer == null) { LoggingUtil.warning("Warning: was not synchronized."); return; } if(synchronizer != oldsync) { LoggingUtil.warning("Warning: was synchronized differently!"); return; } // Loggi...
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protected static double estimateInitialBeta(double[] dist_i, double perplexity) { double sum = 0.; for(double d : dist_i) { double d2 = d * d; sum += d2 < Double.POSITIVE_INFINITY ? d2 : 0.; } return sum > 0 && sum < Double.POSITIVE_INFINITY ? .5 / sum * perplexity * (dist_i.length - 1.) : 1...
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public static List<Relation<?>> getRelations(Result r) { if(r instanceof Relation<?>) { List<Relation<?>> anns = new ArrayList<>(1); anns.add((Relation<?>) r); return anns; } if(r instanceof HierarchicalResult) { return filterResults(((HierarchicalResult) r).getHierarchy(), r, Relati...
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public static List<OrderingResult> getOrderingResults(Result r) { if(r instanceof OrderingResult) { List<OrderingResult> ors = new ArrayList<>(1); ors.add((OrderingResult) r); return ors; } if(r instanceof HierarchicalResult) { return filterResults(((HierarchicalResult) r).getHierarc...
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public static List<CollectionResult<?>> getCollectionResults(Result r) { if(r instanceof CollectionResult<?>) { List<CollectionResult<?>> crs = new ArrayList<>(1); crs.add((CollectionResult<?>) r); return crs; } if(r instanceof HierarchicalResult) { return filterResults(((Hierarchica...
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public static List<IterableResult<?>> getIterableResults(Result r) { if(r instanceof IterableResult<?>) { List<IterableResult<?>> irs = new ArrayList<>(1); irs.add((IterableResult<?>) r); return irs; } if(r instanceof HierarchicalResult) { return filterResults(((HierarchicalResult) r...
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public static <C extends Result> ArrayList<C> filterResults(ResultHierarchy hier, Result r, Class<? super C> restrictionClass) { ArrayList<C> res = new ArrayList<>(); final It<C> it = hier.iterDescendantsSelf(r).filter(restrictionClass); it.forEach(res::add); return res; }
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public static void addChildResult(HierarchicalResult parent, Result child) { parent.getHierarchy().add(parent, child); }
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public static Database findDatabase(ResultHierarchy hier, Result baseResult) { final List<Database> dbs = filterResults(hier, baseResult, Database.class); return (!dbs.isEmpty()) ? dbs.get(0) : null; }
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public static void removeRecursive(ResultHierarchy hierarchy, Result child) { for(It<Result> iter = hierarchy.iterParents(child); iter.valid(); iter.advance()) { hierarchy.remove(iter.get(), child); } for(It<Result> iter = hierarchy.iterChildren(child); iter.valid(); iter.advance()) { removeRecu...
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protected void findEigenVectors(double[][] imat, double[][] evs, double[] lambda) { final int size = imat.length; Random rnd = random.getSingleThreadedRandom(); double[] tmp = new double[size]; FiniteProgress prog = LOG.isVerbose() ? new FiniteProgress("Learning projections", tdim, LOG) : null; for(...
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protected void randomInitialization(double[] out, Random rnd) { double l2 = 0.; while(!(l2 > 0)) { for(int d = 0; d < out.length; d++) { final double val = rnd.nextDouble(); out[d] = val; l2 += val * val; } } // Standardize: final double s = 1. / FastMath.sqrt(l2)...
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protected double updateEigenvector(double[] in, double[] out, double l) { double s = 1. / (l > 0. ? l : l < 0. ? -l : 1.); s = (in[0] > 0.) ? s : -s; // Reduce flipping vectors double diff = 0.; for(int d = 0; d < in.length; d++) { in[d] *= s; // Scale to unit length // Compute change from p...
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protected void updateMatrix(double[][] mat, final double[] evec, double eval) { final int size = mat.length; for(int i = 0; i < size; i++) { final double[] mati = mat[i]; final double eveci = evec[i]; for(int j = 0; j < size; j++) { mati[j] -= eval * eveci * evec[j]; } } }
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