instance_id stringlengths 10 57 | patch stringlengths 261 37.7k | repo stringlengths 7 53 | base_commit stringlengths 40 40 | hints_text stringclasses 301
values | test_patch stringlengths 212 2.22M | problem_statement stringlengths 23 37.7k | version stringclasses 1
value | environment_setup_commit stringlengths 40 40 | FAIL_TO_PASS listlengths 1 4.94k | PASS_TO_PASS listlengths 0 7.82k | meta dict | created_at stringlengths 25 25 | license stringclasses 8
values | __index_level_0__ int64 0 6.41k |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Dorthu__openapi3-94 | diff --git a/openapi3/schemas.py b/openapi3/schemas.py
index 0796552..d454e47 100644
--- a/openapi3/schemas.py
+++ b/openapi3/schemas.py
@@ -8,6 +8,7 @@ TYPE_LOOKUP = {
"object": dict,
"string": str,
"boolean": bool,
+ "number": float,
}
| Dorthu/openapi3 | fba9f2785a822e951e9e13f44486840f4e03d80e | diff --git a/tests/conftest.py b/tests/conftest.py
index 7dffe2a..ffa7925 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -213,6 +213,7 @@ def with_external_docs():
@pytest.fixture
+
def with_openapi_310_references():
"""
Provides a spec with OpenAPI 3.1.0 expanded Reference Objects
@@ -226,3 ... | [Bug] - Expects incorrect type on parameter default
Trying to parse a spec containing a parameter component with a numeric default with incorrectly throw and states that a string default was expected.
Version: `1.7.0`
Minimal example spec:
```yaml
openapi: 3.0.0
info:
title: Test api
description: te... | 0.0 | fba9f2785a822e951e9e13f44486840f4e03d80e | [
"tests/parsing_test.py::test_schema_default_types"
] | [
"tests/parsing_test.py::test_parse_from_yaml",
"tests/parsing_test.py::test_parsing_fails",
"tests/parsing_test.py::test_parsing_broken_reference",
"tests/parsing_test.py::test_parsing_wrong_parameter_name",
"tests/parsing_test.py::test_parsing_dupe_operation_id",
"tests/parsing_test.py::test_parsing_para... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2023-03-08 03:22:35+00:00 | bsd-3-clause | 203 | |
DropD__reentry-50 | diff --git a/README.rst b/README.rst
index 79101b2..6b33db1 100644
--- a/README.rst
+++ b/README.rst
@@ -20,7 +20,7 @@ Features
Note that ``reentry_register`` creates a *build-time*
dependency on ``reentry``. The suggested way to resolve that is using the
method described in `PEP518 <https://www.python.org/dev/peps/... | DropD/reentry | 06cabf7841d1fdb78d68cbd8395598d16d8ab286 | diff --git a/reentry/tests/test_config.py b/reentry/tests/test_config.py
index a18d4e6..7c600cf 100644
--- a/reentry/tests/test_config.py
+++ b/reentry/tests/test_config.py
@@ -6,6 +6,7 @@ try:
except ImportError:
from pathlib import Path
+import os
import pytest # pylint: disable=unused-import
import six
f... | What is the rational behind pkg_path_filename in get_datafile()?
Hi :)
First of all, thanks for a great package!
I would like to know if the name of the filename created in get_datafile function (config.py) has some important meaning and weather of not it can be changed.
This name can be a little problematic whe... | 0.0 | 06cabf7841d1fdb78d68cbd8395598d16d8ab286 | [
"reentry/tests/test_config.py::test_get_config",
"reentry/tests/test_config.py::test_get_config_with_env_var"
] | [
"reentry/tests/test_config.py::test_find_config",
"reentry/tests/test_config.py::test_make_config_parser",
"reentry/tests/test_config.py::test_get_datafile"
] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2019-04-27 07:31:22+00:00 | mit | 204 | |
Duke-GCB__DukeDSClient-61 | diff --git a/ddsc/core/filedownloader.py b/ddsc/core/filedownloader.py
index 5049aac..e8ab7f5 100644
--- a/ddsc/core/filedownloader.py
+++ b/ddsc/core/filedownloader.py
@@ -106,8 +106,9 @@ class FileDownloader(object):
Write out a empty file so the workers can seek to where they should write and write their da... | Duke-GCB/DukeDSClient | 81d8fc03fdbb9209d949f319bf4b4691b1615a59 | diff --git a/ddsc/core/tests/test_fileuploader.py b/ddsc/core/tests/test_fileuploader.py
index f8ca72b..44bfb7e 100644
--- a/ddsc/core/tests/test_fileuploader.py
+++ b/ddsc/core/tests/test_fileuploader.py
@@ -47,6 +47,7 @@ class TestParallelChunkProcessor(TestCase):
(100, 900000, 9000),
(125, ... | “range() step argument must not be zero”
Crash at approx. 30% completion, uploading a folder to a new project: “range() step argument must not be zero”
<img width="806" alt="screen shot 2016-05-25 at 1 31 11 pm" src="https://cloud.githubusercontent.com/assets/11540881/15551266/38d08f16-2283-11e6-9708-c5f93edb99d9.png"... | 0.0 | 81d8fc03fdbb9209d949f319bf4b4691b1615a59 | [
"ddsc/core/tests/test_fileuploader.py::TestParallelChunkProcessor::test_determine_num_chunks"
] | [
"ddsc/core/tests/test_fileuploader.py::TestFileUploader::test_make_chunk_processor_with_none",
"ddsc/core/tests/test_fileuploader.py::TestFileUploader::test_make_chunk_processor_with_one",
"ddsc/core/tests/test_fileuploader.py::TestFileUploader::test_make_chunk_processor_with_two",
"ddsc/core/tests/test_fileu... | {
"failed_lite_validators": [
"has_hyperlinks",
"has_media",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2016-05-25 18:51:33+00:00 | mit | 205 | |
E3SM-Project__zstash-168 | diff --git a/zstash/extract.py b/zstash/extract.py
index 5382609..9918bf4 100644
--- a/zstash/extract.py
+++ b/zstash/extract.py
@@ -57,7 +57,11 @@ def extract(keep_files: bool = True):
logger.error(tar)
else:
verb: str = "extracting" if keep_files else "checking"
- logger.info("No fai... | E3SM-Project/zstash | fb39bbc5272177e1de7f5f65e767b6013340d981 | diff --git a/tests/test_check.py b/tests/test_check.py
index 6bc3910..1a97239 100644
--- a/tests/test_check.py
+++ b/tests/test_check.py
@@ -189,7 +189,7 @@ class TestCheck(TestZstash):
)
self.assertEqualOrStop(
output + err,
- "INFO: Opening tar archive {}/000000.tar\nINFO: Ch... | zstash check reports success even if exceptions occur
`zstash check` reports success even if exceptions occur.
Exceptions like the following may occur, but `zstash check` still ends with `INFO: No failures detected when checking the files.`:
```
Process Process-3:
Traceback (most recent call last):
File "/glob... | 0.0 | fb39bbc5272177e1de7f5f65e767b6013340d981 | [
"tests/test_check.py::TestCheck::testCheckKeepTars"
] | [] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2021-11-19 23:44:15+00:00 | bsd-3-clause | 207 | |
ECCO-GROUP__ECCOv4-py-63 | diff --git a/ecco_v4_py/get_section_masks.py b/ecco_v4_py/get_section_masks.py
index a03db6f..6ffa665 100644
--- a/ecco_v4_py/get_section_masks.py
+++ b/ecco_v4_py/get_section_masks.py
@@ -90,6 +90,9 @@ def get_section_endpoints(section_name):
elif section_name == 'icelandfaroe':
pt1 = [-16, 65]
... | ECCO-GROUP/ECCOv4-py | 82c2327427fba0d90acdf7b87ffab607387fa331 | diff --git a/ecco_v4_py/test/test_section_masks.py b/ecco_v4_py/test/test_section_masks.py
new file mode 100644
index 0000000..9610842
--- /dev/null
+++ b/ecco_v4_py/test/test_section_masks.py
@@ -0,0 +1,11 @@
+
+from __future__ import division, print_function
+import ecco_v4_py as ecco
+
+
+def test_section_endpoints(... | 'Faroe Scotland' is included in the get_available_sections() but not included in get_section_endpoints()
get_section_endpoints() returns and error for 'Faroe Scotland'. I think this is because the coordinates for this section is actually not included in the function. I assume that the info exists but was accidentally r... | 0.0 | 82c2327427fba0d90acdf7b87ffab607387fa331 | [
"ecco_v4_py/test/test_section_masks.py::test_section_endpoints"
] | [] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2019-08-25 11:55:09+00:00 | mit | 208 | |
EFForg__starttls-policy-cli-24 | diff --git a/starttls_policy_cli/configure.py b/starttls_policy_cli/configure.py
index 8ec010d..bb13dec 100644
--- a/starttls_policy_cli/configure.py
+++ b/starttls_policy_cli/configure.py
@@ -20,8 +20,9 @@ class ConfigGenerator(object):
"""
__metaclass__ = abc.ABCMeta
- def __init__(self, policy_dir):
+... | EFForg/starttls-policy-cli | be1143dcfb2d54fe638a850f63f603aedb068e0c | diff --git a/starttls_policy_cli/tests/configure_test.py b/starttls_policy_cli/tests/configure_test.py
index 5bd4b2e..706c16a 100644
--- a/starttls_policy_cli/tests/configure_test.py
+++ b/starttls_policy_cli/tests/configure_test.py
@@ -104,11 +104,15 @@ test_json_expired = '{\
}'
testgen_data = [
- param("s... | Implement Early Adopter mode
Actual issue is created for tracking implementation progress of feature described [here](https://github.com/EFForg/starttls-everywhere/issues/124). | 0.0 | be1143dcfb2d54fe638a850f63f603aedb068e0c | [
"starttls_policy_cli/tests/configure_test.py::TestPostfixGenerator::test_expired_policy",
"starttls_policy_cli/tests/configure_test.py::TestPostfixGenerator::test_simple_policy",
"starttls_policy_cli/tests/configure_test.py::TestPostfixGenerator::test_simple_policy_early",
"starttls_policy_cli/tests/main_test... | [
"starttls_policy_cli/tests/configure_test.py::TestConfigGenerator::test_generate",
"starttls_policy_cli/tests/configure_test.py::TestConfigGenerator::test_manual_instructions",
"starttls_policy_cli/tests/configure_test.py::TestPostfixGenerator::test_instruct_string",
"starttls_policy_cli/tests/configure_test.... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2019-03-06 18:59:16+00:00 | apache-2.0 | 209 | |
EFForg__starttls-policy-cli-26 | diff --git a/starttls_policy_cli/policy.py b/starttls_policy_cli/policy.py
index b4ab17a..1cb0212 100644
--- a/starttls_policy_cli/policy.py
+++ b/starttls_policy_cli/policy.py
@@ -1,5 +1,4 @@
""" Policy config wrapper """
-import collections
import logging
import datetime
import io
@@ -8,6 +7,12 @@ import six
fro... | EFForg/starttls-policy-cli | be1143dcfb2d54fe638a850f63f603aedb068e0c | diff --git a/starttls_policy_cli/tests/policy_test.py b/starttls_policy_cli/tests/policy_test.py
index 81a8fb1..994c7bd 100644
--- a/starttls_policy_cli/tests/policy_test.py
+++ b/starttls_policy_cli/tests/policy_test.py
@@ -16,7 +16,6 @@ test_json = '{\
"timestamp": "2014-05-26T01:35:33+0000",\
"poli... | policy.py: Deprecation Warning
Run of testsuite showed to me following warning:
```
starttls_policy_cli/policy.py:220
/home/user/starttls-policy-cli/starttls_policy_cli/policy.py:220: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it... | 0.0 | be1143dcfb2d54fe638a850f63f603aedb068e0c | [
"starttls_policy_cli/tests/policy_test.py::TestConfig::test_basic_parsing"
] | [
"starttls_policy_cli/tests/policy_test.py::TestConfigEncoder::test_encode_datetime",
"starttls_policy_cli/tests/policy_test.py::TestConfigEncoder::test_encode_empty_dict",
"starttls_policy_cli/tests/policy_test.py::TestConfigEncoder::test_encode_empty_list",
"starttls_policy_cli/tests/policy_test.py::TestConf... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2019-03-06 19:31:28+00:00 | apache-2.0 | 210 | |
EFForg__starttls-policy-cli-27 | diff --git a/starttls_policy_cli/policy.py b/starttls_policy_cli/policy.py
index b4ab17a..8b5aedb 100644
--- a/starttls_policy_cli/policy.py
+++ b/starttls_policy_cli/policy.py
@@ -210,7 +210,6 @@ class PolicyNoAlias(Policy):
@property
def policy_alias(self):
""" This type of policy can't be aliased.... | EFForg/starttls-policy-cli | be1143dcfb2d54fe638a850f63f603aedb068e0c | diff --git a/starttls_policy_cli/tests/policy_test.py b/starttls_policy_cli/tests/policy_test.py
index 81a8fb1..994c7bd 100644
--- a/starttls_policy_cli/tests/policy_test.py
+++ b/starttls_policy_cli/tests/policy_test.py
@@ -16,7 +16,6 @@ test_json = '{\
"timestamp": "2014-05-26T01:35:33+0000",\
"poli... | Config parser schema contains field not present in format spec
[Field Enforcer](https://github.com/EFForg/starttls-policy-cli/blob/687dbbf99b683eebceb524fb93286d5ebfe57204/starttls_policy_cli/util.py#L102-L105) ∉ [Format Spec](https://github.com/EFForg/starttls-everywhere/blob/master/RULES.md) | 0.0 | be1143dcfb2d54fe638a850f63f603aedb068e0c | [
"starttls_policy_cli/tests/policy_test.py::TestConfig::test_basic_parsing"
] | [
"starttls_policy_cli/tests/policy_test.py::TestConfigEncoder::test_encode_datetime",
"starttls_policy_cli/tests/policy_test.py::TestConfigEncoder::test_encode_empty_dict",
"starttls_policy_cli/tests/policy_test.py::TestConfigEncoder::test_encode_empty_list",
"starttls_policy_cli/tests/policy_test.py::TestConf... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_hyperlinks",
"has_many_modified_files",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2019-03-08 19:23:07+00:00 | apache-2.0 | 211 | |
ESMCI__cime-4019 | diff --git a/config/xml_schemas/config_machines.xsd b/config/xml_schemas/config_machines.xsd
index 1d8dba900..3dd64f15e 100644
--- a/config/xml_schemas/config_machines.xsd
+++ b/config/xml_schemas/config_machines.xsd
@@ -159,7 +159,7 @@
<xs:element ref="SUPPORTED_BY" minOccurs="1" maxOccurs="1"/>
<!--... | ESMCI/cime | f919e5809e34fe5564f306e9b70ff85458c13bca | diff --git a/scripts/lib/CIME/tests/test_utils.py b/scripts/lib/CIME/tests/test_utils.py
index dde52eff8..2759b5352 100644
--- a/scripts/lib/CIME/tests/test_utils.py
+++ b/scripts/lib/CIME/tests/test_utils.py
@@ -2,10 +2,12 @@
import os
import sys
+import tempfile
import unittest
from unittest import mock
-from... | maxOccurs set to 1 for MAX_TASKS_PER_NODE breaks E3SM machine
PR #3989 introduced a change that breaks some E3SM machines.
Commit introducing the change https://github.com/sjsprecious/cime/commit/89a4292be3c78244e5042a8ad36453ae5407a7d8.
Machines broken with change
- **summit** https://github.com/E3SM-Project/E3... | 0.0 | f919e5809e34fe5564f306e9b70ff85458c13bca | [
"scripts/lib/CIME/tests/test_utils.py::TestIndentStr::test_indent_string_multiline",
"scripts/lib/CIME/tests/test_utils.py::TestIndentStr::test_indent_string_singleline",
"scripts/lib/CIME/tests/test_utils.py::TestUtils::test_import_from_file",
"scripts/lib/CIME/tests/test_utils.py::TestUtils::test_run_and_lo... | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-06-28 22:31:10+00:00 | bsd-3-clause | 212 | |
ESMCI__cime-4053 | diff --git a/scripts/lib/CIME/case/case.py b/scripts/lib/CIME/case/case.py
index e35b576da..d6f66c29f 100644
--- a/scripts/lib/CIME/case/case.py
+++ b/scripts/lib/CIME/case/case.py
@@ -1729,8 +1729,11 @@ directory, NOT in this subdirectory."""
lines_len = len(lines)
lines.insert(lines_len-1 if init el... | ESMCI/cime | dbaa9b2d2b8e24e6ebbed33e252ba3b2f434b8cc | diff --git a/scripts/lib/CIME/tests/test_case.py b/scripts/lib/CIME/tests/test_case.py
index 6595b861b..8585fb2dd 100644
--- a/scripts/lib/CIME/tests/test_case.py
+++ b/scripts/lib/CIME/tests/test_case.py
@@ -216,6 +216,25 @@ class TestCase_RecordCmd(unittest.TestCase):
for x, y in zip(calls, expected):
... | replay.sh: Capture script in provenance.py for archiving (E3SM)
We need to archive replay.sh in performance archive so that it can be picked up by PACE for E3SM.
Logic needs to be added to https://github.com/ESMCI/cime/blob/master/scripts/lib/CIME/provenance.py#L400
cc @jasonb5 @rljacob | 0.0 | dbaa9b2d2b8e24e6ebbed33e252ba3b2f434b8cc | [
"scripts/lib/CIME/tests/test_case.py::TestCase_RecordCmd::test_error"
] | [
"scripts/lib/CIME/tests/test_case.py::TestCaseSubmit::test__submit",
"scripts/lib/CIME/tests/test_case.py::TestCaseSubmit::test_check_case",
"scripts/lib/CIME/tests/test_case.py::TestCaseSubmit::test_submit",
"scripts/lib/CIME/tests/test_case.py::TestCase::test_copy",
"scripts/lib/CIME/tests/test_case.py::T... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2021-07-22 23:14:28+00:00 | bsd-3-clause | 213 | |
ESMCI__cime-4058 | diff --git a/ChangeLog b/ChangeLog
index 546ffca7e..b715a4a20 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,5 +1,55 @@
======================================================================
+Originator: Chris Fischer
+Date: 8-2-2021
+Tag: cime6.0.4
+Answer Changes: None
+Tests: scripts_regression_tests
+Dependencies... | ESMCI/cime | c6f489356fd385c465eec285b0321c09c12b2e97 | diff --git a/scripts/lib/CIME/tests/test_utils.py b/scripts/lib/CIME/tests/test_utils.py
old mode 100644
new mode 100755
index ed7ea3d7b..dad176b8e
--- a/scripts/lib/CIME/tests/test_utils.py
+++ b/scripts/lib/CIME/tests/test_utils.py
@@ -1,15 +1,17 @@
#!/usr/bin/env python3
import os
+import shutil
import sys
imp... | Support the creation of multiple user_nl files for a component
CISM in CESM will soon support running multiple ice sheets in the same case. Each of these ice sheets will have its own config file (similar to a namelist file), with different settings. Therefore, in a run containing Greenland and Antarctica (for example) ... | 0.0 | c6f489356fd385c465eec285b0321c09c12b2e97 | [
"scripts/lib/CIME/tests/test_utils.py::TestIndentStr::test_indent_string_multiline",
"scripts/lib/CIME/tests/test_utils.py::TestIndentStr::test_indent_string_singleline",
"scripts/lib/CIME/tests/test_utils.py::TestLineDefinesPythonFunction::test_def_barfoo",
"scripts/lib/CIME/tests/test_utils.py::TestLineDefi... | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-07-30 22:02:39+00:00 | bsd-3-clause | 214 | |
ESSS__conda-devenv-51 | diff --git a/HISTORY.rst b/HISTORY.rst
index 608aaa0..f9fafd4 100644
--- a/HISTORY.rst
+++ b/HISTORY.rst
@@ -3,6 +3,12 @@ History
=======
+0.9.5 (2017-04-24)
+------------------
+
+* Handle ``None`` correctly, which actually fixes (`#49`_).
+
+
0.9.4 (2017-04-20)
------------------
diff --git a/conda_devenv/de... | ESSS/conda-devenv | 320f7fdd672abf4122506850982a6b4095614e55 | diff --git a/tests/test_main.py b/tests/test_main.py
index 4f0db10..feb2425 100644
--- a/tests/test_main.py
+++ b/tests/test_main.py
@@ -21,16 +21,20 @@ def patch_conda_calls(mocker):
('environment.devenv.yml', 1),
('environment.yml', 0),
])
+@pytest.mark.parametrize('return_none', [True, False])
@pytest.ma... | 0.9.3 broken: no longer generates activate/deactivate scripts
#46 introduced a bug: `conda-devenv` now calls `conda_env.main` directly, which probably calls `sys.exit()`, which skips activate/deactivate scripts generation. | 0.0 | 320f7fdd672abf4122506850982a6b4095614e55 | [
"tests/test_main.py::test_handle_input_file[True-environment.yml-0]"
] | [
"tests/test_main.py::test_handle_input_file[False-environment.yml-0]",
"tests/test_main.py::test_print[environment.yml]"
] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2017-04-24 13:37:58+00:00 | mit | 215 | |
ESSS__conda-devenv-72 | diff --git a/conda_devenv/devenv.py b/conda_devenv/devenv.py
index a89cf89..aad9646 100644
--- a/conda_devenv/devenv.py
+++ b/conda_devenv/devenv.py
@@ -7,16 +7,17 @@ import sys
import six
-def render_jinja(contents, filename):
+def render_jinja(contents, filename, is_included):
import jinja2
import sys
... | ESSS/conda-devenv | f74b1ebc267d9c765e0f4851cf1154d3434a0e49 | diff --git a/tests/test_include.py b/tests/test_include.py
index f3eb7fc..308206d 100644
--- a/tests/test_include.py
+++ b/tests/test_include.py
@@ -7,7 +7,7 @@ from conda_devenv.devenv import handle_includes, render_jinja
def obtain_yaml_dicts(root_yaml_filename):
contents = open(root_yaml_filename, "r").read(... | Add a way to identify if the current file is the "main" devenv file | 0.0 | f74b1ebc267d9c765e0f4851cf1154d3434a0e49 | [
"tests/test_jinja.py::test_jinja_root",
"tests/test_jinja.py::test_jinja_os",
"tests/test_jinja.py::test_jinja_sys",
"tests/test_jinja.py::test_jinja_platform",
"tests/test_jinja.py::test_jinja_invalid_template"
] | [
"tests/test_load_yaml_dict.py::test_get_env_name[True]",
"tests/test_load_yaml_dict.py::test_get_env_name[False]"
] | {
"failed_lite_validators": [
"has_short_problem_statement"
],
"has_test_patch": true,
"is_lite": false
} | 2018-12-13 23:55:40+00:00 | mit | 216 | |
Edinburgh-Genome-Foundry__DnaChisel-61 | diff --git a/dnachisel/Location.py b/dnachisel/Location.py
index 853064f..6a3fdca 100644
--- a/dnachisel/Location.py
+++ b/dnachisel/Location.py
@@ -40,20 +40,25 @@ class Location:
def overlap_region(self, other_location):
"""Return the overlap span between two locations (None if None)."""
- stra... | Edinburgh-Genome-Foundry/DnaChisel | 0678f74bc0b92e0e7daa975f1ea6c94992cb3792 | diff --git a/tests/builtin_specifications/test_AvoidPattern.py b/tests/builtin_specifications/test_AvoidPattern.py
index 46633e7..bed081e 100644
--- a/tests/builtin_specifications/test_AvoidPattern.py
+++ b/tests/builtin_specifications/test_AvoidPattern.py
@@ -8,6 +8,7 @@ from dnachisel import (
RepeatedKmerPatter... | Issue with AvoidPattern (and potentially other builtin_specifications)
It looks as though AvoidPattern doesn't preserve its strand information when being localized if the original strand information is 'from_location'
https://github.com/Edinburgh-Genome-Foundry/DnaChisel/blob/db0b606ec993a509de9f3bb4d8acde9baadeef99... | 0.0 | 0678f74bc0b92e0e7daa975f1ea6c94992cb3792 | [
"tests/builtin_specifications/test_AvoidPattern.py::test_location_strand_gets_conserved"
] | [
"tests/builtin_specifications/test_AvoidPattern.py::test_AvoidPattern_on_strands",
"tests/builtin_specifications/test_AvoidPattern.py::test_AvoidPattern_with_regular_expression",
"tests/builtin_specifications/test_AvoidPattern.py::test_avoid_repeated_small_kmers",
"tests/builtin_specifications/test_AvoidPatte... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-07-21 19:51:09+00:00 | mit | 217 | |
EdinburghGenomics__EGCG-Core-11 | diff --git a/egcg_core/ncbi.py b/egcg_core/ncbi.py
index 13f74d6..69cc44c 100644
--- a/egcg_core/ncbi.py
+++ b/egcg_core/ncbi.py
@@ -76,7 +76,7 @@ def _fetch_from_eutils(species):
rank = None
if match:
rank = match.group(1)
- if rank == 'species':
+ if rank in ['species', 's... | EdinburghGenomics/EGCG-Core | a835cffab69da2193d4653f31230f0d487596b78 | diff --git a/tests/test_ncbi.py b/tests/test_ncbi.py
index ef931bb..af10556 100644
--- a/tests/test_ncbi.py
+++ b/tests/test_ncbi.py
@@ -24,6 +24,11 @@ def test_fetch_from_eutils():
<OtherNames><CommonName>a common name</CommonName></OtherNames>
<Rank>species</Rank>
'''
+ ncbi_fetch_data_sub_s... | Canis lupus familiaris NCBI query returns None
Because _C. l. familiaris_ has `subspecies` in its efetch, the regex system in `fetch_from_eutils` breaks down. We should query the XML more robustly. | 0.0 | a835cffab69da2193d4653f31230f0d487596b78 | [
"tests/test_ncbi.py::test_fetch_from_eutils"
] | [
"tests/test_ncbi.py::test_cache",
"tests/test_ncbi.py::test_get_species_name"
] | {
"failed_lite_validators": [
"has_short_problem_statement"
],
"has_test_patch": true,
"is_lite": false
} | 2016-07-15 13:03:14+00:00 | mit | 218 | |
EdinburghGenomics__EGCG-Core-12 | diff --git a/egcg_core/__init__.py b/egcg_core/__init__.py
index e1424ed..58d168b 100644
--- a/egcg_core/__init__.py
+++ b/egcg_core/__init__.py
@@ -1,1 +1,1 @@
-__version__ = '0.3.1'
+__version__ = '0.4'
diff --git a/egcg_core/clarity.py b/egcg_core/clarity.py
index 4691f7c..e896d04 100644
--- a/egcg_core/clarity.py
+... | EdinburghGenomics/EGCG-Core | 43f124d6f77db73cff13117003295ad715d9aabc | diff --git a/tests/test_clarity.py b/tests/test_clarity.py
index b4c3684..6e963a2 100644
--- a/tests/test_clarity.py
+++ b/tests/test_clarity.py
@@ -104,10 +104,9 @@ def test_get_list_of_samples():
exp_lims_sample_ids = ['this', 'that:01', 'other _L:01']
calling_sample_ids = ['this', 'that_01', 'other__L_01']... | clarity.get_list_of_samples crashes if a sample doesn't exist in the Lims
The error is because of the way we're processing sample names. The stacktrace is misleading:
```
File "clarity.py", line 98, in get_list_of_samples
results.extend(_get_list_of_samples(sample_names[start:start+max_query]))
File "clarity.... | 0.0 | 43f124d6f77db73cff13117003295ad715d9aabc | [
"tests/test_clarity.py::test_get_list_of_samples_broken"
] | [
"tests/test_clarity.py::test_get_sample_gender",
"tests/test_clarity.py::test_get_sample_names_from_plate_from_lims",
"tests/test_clarity.py::test_get_expected_yield_for_sample",
"tests/test_clarity.py::test_get_samples",
"tests/test_clarity.py::test_get_output_containers_from_sample_and_step_name",
"test... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2016-07-15 14:25:56+00:00 | mit | 219 | |
EdinburghGenomics__EGCG-Core-52 | diff --git a/egcg_core/archive_management.py b/egcg_core/archive_management.py
index 3437925..58c5eb9 100644
--- a/egcg_core/archive_management.py
+++ b/egcg_core/archive_management.py
@@ -1,6 +1,8 @@
import os
import re
import subprocess
+from time import sleep
+
from egcg_core.app_logging import logging_default a... | EdinburghGenomics/EGCG-Core | 5a073c8d79148ed29379e4818e4dcebd5180eb15 | diff --git a/tests/test_archive_management.py b/tests/test_archive_management.py
index c087706..5d45646 100644
--- a/tests/test_archive_management.py
+++ b/tests/test_archive_management.py
@@ -76,7 +76,7 @@ class TestArchiveManagement(TestEGCG):
'',
'testfile: (0x00000001... | Failure to register for archiving cause pipeline crash
We should make the registering for archiving more robust by sleeping trying again to register the file after 1 second.
https://github.com/EdinburghGenomics/EGCG-Core/blob/master/egcg_core/archive_management.py#L92
This raising can cause Analysis Driver to crash a... | 0.0 | 5a073c8d79148ed29379e4818e4dcebd5180eb15 | [
"tests/test_archive_management.py::TestArchiveManagement::test_register_for_archiving"
] | [
"tests/test_archive_management.py::TestArchiveManagement::test_archive_states",
"tests/test_archive_management.py::TestArchiveManagement::test_archive_directory",
"tests/test_archive_management.py::TestArchiveManagement::test_recall_from_tape",
"tests/test_archive_management.py::TestArchiveManagement::test_re... | {
"failed_lite_validators": [
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2017-05-23 21:56:31+00:00 | mit | 220 | |
EdinburghGenomics__EGCG-Core-6 | diff --git a/egcg_core/rest_communication.py b/egcg_core/rest_communication.py
index 942039b..39acd98 100644
--- a/egcg_core/rest_communication.py
+++ b/egcg_core/rest_communication.py
@@ -1,9 +1,10 @@
import requests
from urllib.parse import urljoin
-from egcg_core.config import default as cfg
+from egcg_core.config... | EdinburghGenomics/EGCG-Core | 0309bf8fdd5d64705fc62184fe31e27c20172fbc | diff --git a/tests/test_rest_communication.py b/tests/test_rest_communication.py
index c43d6b7..b9905c2 100644
--- a/tests/test_rest_communication.py
+++ b/tests/test_rest_communication.py
@@ -21,6 +21,7 @@ patched_response = patch(
'requests.request',
return_value=FakeRestResponse(status_code=200, content=te... | Authentication
Since EdinburghGenomics/Reporting-App will be adding authentication, we should add auth headers to `rest_communication`. | 0.0 | 0309bf8fdd5d64705fc62184fe31e27c20172fbc | [
"tests/test_rest_communication.py::test_post_entry",
"tests/test_rest_communication.py::test_req",
"tests/test_rest_communication.py::test_put_entry",
"tests/test_rest_communication.py::test_patch_entry"
] | [
"tests/test_rest_communication.py::test_parse_query_string",
"tests/test_rest_communication.py::test_get_documents",
"tests/test_rest_communication.py::test_get_document",
"tests/test_rest_communication.py::test_get_documents_depaginate",
"tests/test_rest_communication.py::test_test_content",
"tests/test_... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2016-06-30 09:54:47+00:00 | mit | 221 | |
EdinburghGenomics__EGCG-Core-60 | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 58a261b..6db3fe5 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,10 +1,10 @@
Changelog for EGCG-Core
===========================
-0.8 (unreleased)
+0.7.3 (unreleased)
----------------
-- Nothing changed yet.
+- Add new option to rest_communication.post_entry to s... | EdinburghGenomics/EGCG-Core | dff158066e922124e05d2d93cca14b2ee4ad6bfc | diff --git a/tests/test_rest_communication.py b/tests/test_rest_communication.py
index 3f920be..fcc907f 100644
--- a/tests/test_rest_communication.py
+++ b/tests/test_rest_communication.py
@@ -180,6 +180,24 @@ class TestRestCommunication(TestEGCG):
files={'f': (file_path, b'test content', 'text/plain')}
... | rest_communication: post data as form instead of json
`post_entry` should have an option to specify a post where the data is stored in the form instead of the query string.
| 0.0 | dff158066e922124e05d2d93cca14b2ee4ad6bfc | [
"tests/test_rest_communication.py::TestRestCommunication::test_post_entry"
] | [
"tests/test_rest_communication.py::TestRestCommunication::test_put_entry",
"tests/test_rest_communication.py::TestRestCommunication::test_token_auth",
"tests/test_rest_communication.py::TestRestCommunication::test_detect_files_in_json",
"tests/test_rest_communication.py::TestRestCommunication::test_get_docume... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2017-09-01 14:24:56+00:00 | mit | 222 | |
EdinburghGenomics__EGCG-Core-64 | diff --git a/CHANGELOG.md b/CHANGELOG.md
index f304aea..260484f 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,10 +1,10 @@
Changelog for EGCG-Core
===========================
-0.8 (unreleased)
+0.7.4 (unreleased)
----------------
-- Nothing changed yet.
+- Bugfix in archive management.
0.7.3 (2017-09-01... | EdinburghGenomics/EGCG-Core | 5be3adbce57f2efd3afc6d15f59bb288ce0c1b50 | diff --git a/tests/test_archive_management.py b/tests/test_archive_management.py
index 5d45646..0506957 100644
--- a/tests/test_archive_management.py
+++ b/tests/test_archive_management.py
@@ -80,6 +80,16 @@ class TestArchiveManagement(TestEGCG):
assert get_stdout.call_count == 3
assert get_st... | Broken recursion in archive_management
In archive_management.register_for_archiving, the recursion is called with the built-in function `filter`, which can only be a typo. | 0.0 | 5be3adbce57f2efd3afc6d15f59bb288ce0c1b50 | [
"tests/test_archive_management.py::TestArchiveManagement::test_register_for_archiving"
] | [
"tests/test_archive_management.py::TestArchiveManagement::test_archive_directory",
"tests/test_archive_management.py::TestArchiveManagement::test_archive_states",
"tests/test_archive_management.py::TestArchiveManagement::test_recall_from_tape",
"tests/test_archive_management.py::TestArchiveManagement::test_re... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2017-10-31 13:35:10+00:00 | mit | 223 | |
EdinburghGenomics__EGCG-Core-88 | diff --git a/egcg_core/clarity.py b/egcg_core/clarity.py
index 0068e9d..39d03f8 100644
--- a/egcg_core/clarity.py
+++ b/egcg_core/clarity.py
@@ -113,7 +113,7 @@ def get_genome_version(sample_id, species=None):
def sanitize_user_id(user_id):
if isinstance(user_id, str):
- return re.sub("[^\w_\-.]", "_", u... | EdinburghGenomics/EGCG-Core | f54591f5420dc4b4f8241e080e594a5fd6c5f87a | diff --git a/tests/test_clarity.py b/tests/test_clarity.py
index c4446fb..271d1d2 100644
--- a/tests/test_clarity.py
+++ b/tests/test_clarity.py
@@ -117,6 +117,7 @@ class TestClarity(TestEGCG):
def test_sanitize_user_id(self):
assert clarity.sanitize_user_id('this?that$other another:more') == 'this_that... | Replace (.) dots in user sample name with underscores
Change the sanitize_user_id function to remove dots
https://github.com/EdinburghGenomics/EGCG-Core/blob/f54591f5420dc4b4f8241e080e594a5fd6c5f87a/egcg_core/clarity.py#L114 | 0.0 | f54591f5420dc4b4f8241e080e594a5fd6c5f87a | [
"tests/test_clarity.py::TestClarity::test_sanitize_user_id"
] | [
"tests/test_clarity.py::TestClarity::test_find_run_elements_from_sample",
"tests/test_clarity.py::TestClarity::test_get_valid_lanes",
"tests/test_clarity.py::TestClarity::test_find_project_from_sample",
"tests/test_clarity.py::TestClarity::test_get_samples_arrived_with",
"tests/test_clarity.py::TestClarity:... | {
"failed_lite_validators": [
"has_short_problem_statement"
],
"has_test_patch": true,
"is_lite": false
} | 2018-10-11 09:01:18+00:00 | mit | 224 | |
EdinburghGenomics__EGCG-Core-90 | diff --git a/egcg_core/rest_communication.py b/egcg_core/rest_communication.py
index 0a9e0cc..096648e 100644
--- a/egcg_core/rest_communication.py
+++ b/egcg_core/rest_communication.py
@@ -1,5 +1,6 @@
import json
import mimetypes
+import os
from urllib.parse import urljoin
import requests
from multiprocessing impo... | EdinburghGenomics/EGCG-Core | 8f4fefbdc4383b345ed58c7352b8125fcbe95f44 | diff --git a/tests/test_rest_communication.py b/tests/test_rest_communication.py
index ddb3fdb..e3f372b 100644
--- a/tests/test_rest_communication.py
+++ b/tests/test_rest_communication.py
@@ -1,7 +1,13 @@
+import multiprocessing
import os
import json
+
+import pytest
from requests import Session
from unittest.mock... | Rest_communication cause SSL error in multiprocessing
In some circumstances rest_communication will generate SSL error when communicating with the reporting app over https.
This occurs in the pipeline when it uses multiprocessing. | 0.0 | 8f4fefbdc4383b345ed58c7352b8125fcbe95f44 | [
"tests/test_rest_communication.py::TestRestCommunication::test_failed_req",
"tests/test_rest_communication.py::TestRestCommunication::test_multi_session"
] | [
"tests/test_rest_communication.py::TestRestCommunication::test_req",
"tests/test_rest_communication.py::TestRestCommunication::test_begin_session",
"tests/test_rest_communication.py::TestRestCommunication::test_get_documents",
"tests/test_rest_communication.py::TestRestCommunication::test_parse_query_string",... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2018-11-22 11:15:37+00:00 | mit | 225 | |
EdinburghGenomics__pyclarity-lims-19 | diff --git a/pyclarity_lims/descriptors.py b/pyclarity_lims/descriptors.py
index b33666f..a5a4c28 100644
--- a/pyclarity_lims/descriptors.py
+++ b/pyclarity_lims/descriptors.py
@@ -721,6 +721,48 @@ class ExternalidList(XmlList):
list.append(self, (element.attrib.get('id'), element.attrib.get('uri')))
+clas... | EdinburghGenomics/pyclarity-lims | 82c1b93217a26395d5068fb0080ce09a0578121e | diff --git a/tests/test_descriptors.py b/tests/test_descriptors.py
index 7cfea0a..be7c731 100644
--- a/tests/test_descriptors.py
+++ b/tests/test_descriptors.py
@@ -3,14 +3,15 @@ from sys import version_info
from unittest import TestCase
from xml.etree import ElementTree
+import datetime
import pytest
from pycl... | Queue Class does not have an easily acessible "queue-time" member variable
In the Queue Class I feel as if the "queue-time" member variable should exist under artifacts just like location does. However, I have to traverse artifacts._elems[0]._children[0].text to get the queue time. Can we make this so something like ar... | 0.0 | 82c1b93217a26395d5068fb0080ce09a0578121e | [
"tests/test_descriptors.py::TestIntegerDescriptor::test__set__",
"tests/test_descriptors.py::TestIntegerDescriptor::test__get__",
"tests/test_descriptors.py::TestIntegerDescriptor::test_create",
"tests/test_descriptors.py::TestXmlAttributeList::test_append",
"tests/test_descriptors.py::TestXmlAttributeList:... | [] | {
"failed_lite_validators": [
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2018-01-03 16:43:34+00:00 | mit | 226 | |
EdinburghGenomics__pyclarity-lims-54 | diff --git a/pyclarity_lims/descriptors.py b/pyclarity_lims/descriptors.py
index 91e2a4d..6ac8565 100644
--- a/pyclarity_lims/descriptors.py
+++ b/pyclarity_lims/descriptors.py
@@ -278,21 +278,25 @@ class XmlAction(XmlElementAttributeDict):
action: The type of action to perform. (leave, repeat, remove, review, com... | EdinburghGenomics/pyclarity-lims | a03be6eda34f0d8adaf776d2286198a34e40ecf5 | diff --git a/tests/test_descriptors.py b/tests/test_descriptors.py
index 2523475..407b430 100644
--- a/tests/test_descriptors.py
+++ b/tests/test_descriptors.py
@@ -11,7 +11,7 @@ from pyclarity_lims.descriptors import StringDescriptor, StringAttributeDescript
StringDictionaryDescriptor, IntegerDescriptor, BooleanD... | StepAction rework-step take a Step
It currently accept a protocolStep which is incorrect | 0.0 | a03be6eda34f0d8adaf776d2286198a34e40ecf5 | [
"tests/test_descriptors.py::TestXmlAction::test_set"
] | [
"tests/test_descriptors.py::TestStringDescriptor::test__get__",
"tests/test_descriptors.py::TestStringDescriptor::test__set__",
"tests/test_descriptors.py::TestStringDescriptor::test_create",
"tests/test_descriptors.py::TestIntegerDescriptor::test__get__",
"tests/test_descriptors.py::TestIntegerDescriptor::... | {
"failed_lite_validators": [
"has_short_problem_statement"
],
"has_test_patch": true,
"is_lite": false
} | 2019-03-12 12:44:38+00:00 | mit | 227 | |
Electrostatics__mmcif_pdbx-23 | diff --git a/pdbx/reader.py b/pdbx/reader.py
index 2a91215..c5bd339 100644
--- a/pdbx/reader.py
+++ b/pdbx/reader.py
@@ -46,9 +46,7 @@ class PdbxReader:
try:
self.__parser(self.__tokenizer(self.__input_file), container_list)
except StopIteration:
- pass
- else:
- ... | Electrostatics/mmcif_pdbx | 2d5204cb5fb9ec85ae219bcc51a3733a40645687 | diff --git a/tests/reader_test.py b/tests/reader_test.py
index 4307ad9..e1fb3d5 100644
--- a/tests/reader_test.py
+++ b/tests/reader_test.py
@@ -9,9 +9,11 @@
#
##
"""Test cases for reading PDBx/mmCIF data files reader class."""
+import io
import logging
from pathlib import Path
import pytest
+from pdbx.errors imp... | Refactor usage of StopIteration in pdbx.reader
`pdbx.reader` follows a pre-[PEP 479](https://www.python.org/dev/peps/pep-0479/) pattern of `StopIteration` usage with a `RuntimeError` band-aid. This should be refactored.
@sobolevnrm I'd be happy to send a pull request, unless this code is already being worked on. | 0.0 | 2d5204cb5fb9ec85ae219bcc51a3733a40645687 | [
"tests/reader_test.py::test_missing_value_eof",
"tests/reader_test.py::test_empty_loop_body_eof",
"tests/reader_test.py::test_empty_data_block",
"tests/reader_test.py::test_empty_loop_header_eof",
"tests/reader_test.py::test_empty_file",
"tests/reader_test.py::test_incomplete_multiline_string"
] | [
"tests/reader_test.py::test_missing_value_not_eof",
"tests/reader_test.py::test_missing_key",
"tests/reader_test.py::test_empty_loop_body_not_eof",
"tests/reader_test.py::test_empty_loop_header_not_eof",
"tests/reader_test.py::test_structure_factor_file[1kip-sf.cif]",
"tests/reader_test.py::test_data_file... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_hyperlinks",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2020-07-07 18:18:14+00:00 | cc0-1.0 | 228 | |
Electrostatics__mmcif_pdbx-27 | diff --git a/pdbx/__init__.py b/pdbx/__init__.py
index 17ecc8a..1ad970d 100644
--- a/pdbx/__init__.py
+++ b/pdbx/__init__.py
@@ -8,3 +8,31 @@ http://mmcif.wwpdb.org/docs/sw-examples/python/html/.
See http://mmcif.wwpdb.org/docs/sw-examples/python/html/ for more information
about this package, including examples.
"""... | Electrostatics/mmcif_pdbx | aa5510885133259139f355a6a14a080386745dbd | diff --git a/tests/reader_test.py b/tests/reader_test.py
index e1fb3d5..f685180 100644
--- a/tests/reader_test.py
+++ b/tests/reader_test.py
@@ -15,6 +15,7 @@ from pathlib import Path
import pytest
from pdbx.errors import PdbxSyntaxError
from pdbx.reader import PdbxReader
+from pdbx import loads as read_cifstr
... | Distinguish unknown (?) and inapplicable (.) values from strings
CIF has two special values: `?` for unknown data, and `.` for inapplicable data. As far as I can tell, the API in this library doesn't distinguish these values from strings.
I think it would be very useful if these values are represented by a special c... | 0.0 | aa5510885133259139f355a6a14a080386745dbd | [
"tests/reader_test.py::test_data_file[1kip.cif]",
"tests/reader_test.py::test_data_file[1ffk.cif]",
"tests/reader_test.py::test_structure_factor_file[1kip-sf.cif]",
"tests/reader_test.py::test_empty_file",
"tests/reader_test.py::test_empty_data_block",
"tests/reader_test.py::test_missing_value_eof",
"te... | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-07-08 07:32:45+00:00 | cc0-1.0 | 229 | |
EmilStenstrom__conllu-35 | diff --git a/conllu/parser.py b/conllu/parser.py
index 16ec94b..7456879 100644
--- a/conllu/parser.py
+++ b/conllu/parser.py
@@ -141,7 +141,7 @@ def parse_id_value(value):
ANY_ID = re.compile(ID_SINGLE.pattern + "|" + ID_RANGE.pattern + "|" + ID_DOT_ID.pattern)
-DEPS_RE = re.compile("(" + ANY_ID.pattern + r"):[a-z... | EmilStenstrom/conllu | 6da39c07ccafc4c280f10eb51b12165472a609a9 | diff --git a/tests/test_parser.py b/tests/test_parser.py
index 0e13a77..2733b58 100644
--- a/tests/test_parser.py
+++ b/tests/test_parser.py
@@ -361,6 +361,14 @@ class TestParsePairedListValue(unittest.TestCase):
parse_paired_list_value("5:conj:and|8.1:nsubj:pass|9:nsubj:xsubj"),
[("conj:and",... | Column 'deps' is not being parsed most of the time
Given the following sentence:
```
Removed.
```
The code at `parser.py:152` looks like this:
```python
def parse_paired_list_value(value):
if fullmatch(MULTI_DEPS_PATTERN, value):
return [
(part.split(":", 1)[1], parse_id_value(par... | 0.0 | 6da39c07ccafc4c280f10eb51b12165472a609a9 | [
"tests/test_parser.py::TestParsePairedListValue::test_parse_paired_list"
] | [
"tests/test_parser.py::TestParseLine::test_parse_line_nullable_fields",
"tests/test_parser.py::TestParseLine::test_parse_line_with_spaces",
"tests/test_parser.py::TestParseLine::test_parse_line_only_id_head",
"tests/test_parser.py::TestParseLine::test_parse_line_without_spacing",
"tests/test_parser.py::Test... | {
"failed_lite_validators": [
"has_hyperlinks"
],
"has_test_patch": true,
"is_lite": false
} | 2019-09-29 18:14:22+00:00 | mit | 230 | |
EricssonResearch__arms-38 | diff --git a/arms/misc/__init__.py b/arms/misc/__init__.py
new file mode 100644
index 0000000..cb98f04
--- /dev/null
+++ b/arms/misc/__init__.py
@@ -0,0 +1,1 @@
+"""Modules related to misc"""
diff --git a/arms/misc/socket.py b/arms/misc/socket.py
new file mode 100644
index 0000000..0ca3fd3
--- /dev/null
+++ b/arms/misc... | EricssonResearch/arms | 331f9d63bcfee438fada298186e88743fda4e37e | diff --git a/tests/unit/test_socket.py b/tests/unit/test_socket.py
new file mode 100644
index 0000000..a1a9b3c
--- /dev/null
+++ b/tests/unit/test_socket.py
@@ -0,0 +1,270 @@
+"""Tests for arms.misc.socket"""
+
+import pytest
+import socket
+import threading
+from unittest import mock
+from unittest.mock import call
+f... | Create class for socket communication
Provide a python class to be able to connect with a server via socket communication. The class should include the ability to
- establish a connection to a server,
- close the socket in a timely fashion,
- send and receive messages.
In addition, appropriate tests should be i... | 0.0 | 331f9d63bcfee438fada298186e88743fda4e37e | [
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data6]",
"tests/unit/test_socket.py::test_send_fail",
"tests/unit/test_socket.py::test_connect_fail",
"tests/unit/test_socket.py::test_connect",
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data4]",
"tests/unit/test... | [] | {
"failed_lite_validators": [
"has_added_files",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2018-11-21 21:35:48+00:00 | apache-2.0 | 231 | |
EricssonResearch__arms-41 | diff --git a/arms/units/__init__.py b/arms/units/__init__.py
new file mode 100644
index 0000000..631db19
--- /dev/null
+++ b/arms/units/__init__.py
@@ -0,0 +1,1 @@
+"""Modules related to units"""
diff --git a/arms/units/abb.py b/arms/units/abb.py
new file mode 100644
index 0000000..5d39fa1
--- /dev/null
+++ b/arms/unit... | EricssonResearch/arms | 60d720fd6e3f70dc54f5159f645774664663d425 | diff --git a/tests/unit/test_abb.py b/tests/unit/test_abb.py
new file mode 100644
index 0000000..eed3285
--- /dev/null
+++ b/tests/unit/test_abb.py
@@ -0,0 +1,118 @@
+"""Tests for arms.units.abb"""
+
+import pytest
+from unittest import mock
+from arms.units.abb import ABB
+
+
+def test_init():
+ """The instance att... | Communication with the ABB robot (IRC5)
A class that handles the communication with the IRC5. Requirements:
- Creating/ closing the socket.
- Sending/ receiving of messages in a readable way.
- Implementing of some example cases.
In addition, tests shall show that the class works as intended. | 0.0 | 60d720fd6e3f70dc54f5159f645774664663d425 | [
"tests/unit/test_abb.py::test_send_error[a-data0]",
"tests/unit/test_abb.py::test_send_error[1-data3]",
"tests/unit/test_abb.py::test_init",
"tests/unit/test_abb.py::test_send_error[1-aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa]",
"tests/unit/test_abb.py::test_exchange_... | [] | {
"failed_lite_validators": [
"has_added_files"
],
"has_test_patch": true,
"is_lite": false
} | 2018-11-22 14:17:44+00:00 | apache-2.0 | 232 | |
EricssonResearch__arms-60 | diff --git a/arms/misc/socket.py b/arms/misc/socket.py
index 0ca3fd3..a04eb19 100644
--- a/arms/misc/socket.py
+++ b/arms/misc/socket.py
@@ -25,9 +25,10 @@ class SocketClient:
server.
Return:
- - True, if a setting entry belonging to the client (client_name)
- could be found an... | EricssonResearch/arms | f5dd81f13d6035a9a3729862cae1b0b37a5ac44e | diff --git a/tests/unit/test_socket.py b/tests/unit/test_socket.py
index a1a9b3c..a56d6e7 100644
--- a/tests/unit/test_socket.py
+++ b/tests/unit/test_socket.py
@@ -39,11 +39,12 @@ def test_get_config_and_connect():
"""
client = SocketClient("test_socket")
data = {"socket": {"test_socket": {"host": host,... | Refactor of SocketClient.get_config_and_connect
By now the method SocketClient.get_config_and_connect only returns one value, which equals True if the settings to the client could be found and False if not.
It seems necessary that this function returns two values [*1, *2], because usually this function is only call... | 0.0 | f5dd81f13d6035a9a3729862cae1b0b37a5ac44e | [
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data5]",
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data1]",
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data6]",
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data7]",
... | [
"tests/unit/test_socket.py::test_send",
"tests/unit/test_socket.py::test_connect_fail",
"tests/unit/test_socket.py::test_send_fail",
"tests/unit/test_socket.py::test_init",
"tests/unit/test_socket.py::test_get_config_and_connect",
"tests/unit/test_socket.py::test_connect",
"tests/unit/test_socket.py::te... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2018-12-04 10:45:09+00:00 | apache-2.0 | 233 | |
EricssonResearch__arms-63 | diff --git a/arms/misc/socket.py b/arms/misc/socket.py
index 0ca3fd3..a04eb19 100644
--- a/arms/misc/socket.py
+++ b/arms/misc/socket.py
@@ -25,9 +25,10 @@ class SocketClient:
server.
Return:
- - True, if a setting entry belonging to the client (client_name)
- could be found an... | EricssonResearch/arms | f5dd81f13d6035a9a3729862cae1b0b37a5ac44e | diff --git a/tests/unit/test_alarms.py b/tests/unit/test_alarms.py
new file mode 100644
index 0000000..094319a
--- /dev/null
+++ b/tests/unit/test_alarms.py
@@ -0,0 +1,90 @@
+"""Tests for arms.units.alarms.Alarms.listen"""
+
+import pytest
+import requests
+from unittest import mock
+from arms.config import config
+fro... | Fetching and evaluating of DU failure reports
In total two things have to be implemented to fulfill this issue:
- A small script that starts a server and provides the DU link failure. For simplification, the DU failure simply equals the letter _A_. For more details see the example failure report we got from Ericsson... | 0.0 | f5dd81f13d6035a9a3729862cae1b0b37a5ac44e | [
"tests/unit/test_socket.py::TestRecv::test_recv_sock_is_none",
"tests/unit/test_socket.py::TestRecv::test_recv_error",
"tests/unit/test_socket.py::TestRecv::test_recv_no_connection",
"tests/unit/test_socket.py::test_get_config_and_connect_fail[config_data6]",
"tests/unit/test_socket.py::test_get_config_and_... | [] | {
"failed_lite_validators": [
"has_added_files",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2018-12-04 12:06:07+00:00 | apache-2.0 | 234 | |
Erotemic__ubelt-64 | diff --git a/ubelt/util_path.py b/ubelt/util_path.py
index c028ba2..5241209 100644
--- a/ubelt/util_path.py
+++ b/ubelt/util_path.py
@@ -291,9 +291,9 @@ def ensuredir(dpath, mode=0o1777, verbose=None, recreate=False):
>>> assert exists(dpath)
>>> os.rmdir(dpath)
"""
- if verbose is None: # no... | Erotemic/ubelt | 89085f148ace79aa0dfdc17383423e3dfe138017 | diff --git a/tests/test_path.py b/tests/test_path.py
index 49ea0c8..fafadd2 100644
--- a/tests/test_path.py
+++ b/tests/test_path.py
@@ -55,8 +55,31 @@ def test_augpath_dpath():
def test_ensuredir_recreate():
- ub.ensuredir('foo', recreate=True)
- ub.ensuredir('foo/bar')
- assert exists('foo/bar')
- ub... | Request: ensure director verbose mentions if it created a new directory
It would be nice if the verbose mode actually said something like
Ensuring directory ('...') status: existing
Ensuring directory ('...') status: creating
Maybe have a second verbose level if you want to maintain the original way. | 0.0 | 89085f148ace79aa0dfdc17383423e3dfe138017 | [
"tests/test_path.py::test_ensuredir_verbosity"
] | [
"tests/test_path.py::test_augpath_identity",
"tests/test_path.py::test_ensuredir_recreate",
"tests/test_path.py::test_tempdir",
"tests/test_path.py::test_augpath_dpath"
] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2019-10-27 22:57:44+00:00 | apache-2.0 | 235 | |
European-XFEL__EXtra-data-128 | diff --git a/extra_data/reader.py b/extra_data/reader.py
index 263c848..c388030 100644
--- a/extra_data/reader.py
+++ b/extra_data/reader.py
@@ -570,16 +570,54 @@ class DataCollection:
res = defaultdict(set)
if isinstance(selection, dict):
# {source: {key1, key2}}
- # {source: ... | European-XFEL/EXtra-data | 76c30bf18529ed0c3eb9de9c3d1c15494f807ac5 | diff --git a/extra_data/tests/test_reader_mockdata.py b/extra_data/tests/test_reader_mockdata.py
index aa84f1b..8668764 100644
--- a/extra_data/tests/test_reader_mockdata.py
+++ b/extra_data/tests/test_reader_mockdata.py
@@ -476,17 +476,46 @@ def test_select(mock_fxe_raw_run):
assert 'SPB_XTD9_XGM/DOOCS/MAIN' in... | Selected keys can be overridden
`.select()` is meant to always make a narrower selection from the current one, but @daviddoji found a case where it can get broader again:
```python
source = 'FXE_DET_LPD1M-1/DET/2CH0:xtdf'
sel = run.select(source, "image.data")
print(sel.keys_for_source(source))
sel = sel.selec... | 0.0 | 76c30bf18529ed0c3eb9de9c3d1c15494f807ac5 | [
"extra_data/tests/test_reader_mockdata.py::test_select[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_select[0.5]"
] | [
"extra_data/tests/test_reader_mockdata.py::test_train_by_id_fxe_run_selection[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_file_get_series_control[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_read_skip_invalid[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_iterate_trains_fxe[1.0]",... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2021-01-15 18:12:55+00:00 | bsd-3-clause | 236 | |
European-XFEL__EXtra-data-165 | diff --git a/docs/reading_files.rst b/docs/reading_files.rst
index faabbfa..f8b6b4a 100644
--- a/docs/reading_files.rst
+++ b/docs/reading_files.rst
@@ -67,6 +67,8 @@ to refer to all data associated with that 0.1 second window.
.. automethod:: get_data_counts
+ .. automethod:: train_timestamps
+
.. autome... | European-XFEL/EXtra-data | 05de22b55fdc424473127335d2ca6b3a7026ab6d | diff --git a/extra_data/tests/mockdata/base.py b/extra_data/tests/mockdata/base.py
index 0b10de9..ad725cc 100644
--- a/extra_data/tests/mockdata/base.py
+++ b/extra_data/tests/mockdata/base.py
@@ -1,4 +1,4 @@
-from datetime import datetime, timedelta
+from datetime import datetime, timedelta, timezone
import os.path a... | Provide a means to get train timestamps
The new DAQ version adds a timestamp field in the INDEX section, with a timestamp matching each train ID. We should have a way to access these. | 0.0 | 05de22b55fdc424473127335d2ca6b3a7026ab6d | [
"extra_data/tests/test_reader_mockdata.py::test_train_timestamps_nat[0.5]",
"extra_data/tests/test_reader_mockdata.py::test_train_timestamps_nat[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_train_timestamps"
] | [
"extra_data/tests/test_reader_mockdata.py::test_iterate_trains[0.5]",
"extra_data/tests/test_reader_mockdata.py::test_iterate_trains_flat_keys[0.5]",
"extra_data/tests/test_reader_mockdata.py::test_get_train_bad_device_name[0.5]",
"extra_data/tests/test_reader_mockdata.py::test_detector_info_oldfmt[0.5]",
"... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2021-04-09 14:59:14+00:00 | bsd-3-clause | 237 | |
European-XFEL__EXtra-data-175 | diff --git a/.github/dependabot/constraints.txt b/.github/dependabot/constraints.txt
index 7cd24d9..7d680cb 100644
--- a/.github/dependabot/constraints.txt
+++ b/.github/dependabot/constraints.txt
@@ -14,5 +14,5 @@ pyparsing==2.4.7
python-dateutil==2.8.1
pytz==2021.1
pyzmq==22.0.3
-six==1.15.0
-xarray<=0.17.0
+six==... | European-XFEL/EXtra-data | 13a2af8210d71d8a5e97d6e94a36091fc2ebd458 | diff --git a/extra_data/tests/test_components.py b/extra_data/tests/test_components.py
index fa0b125..0454a3f 100644
--- a/extra_data/tests/test_components.py
+++ b/extra_data/tests/test_components.py
@@ -164,6 +164,22 @@ def test_get_array_lpd_parallelgain(mock_lpd_parallelgain_run):
np.testing.assert_array_equal... | Provide a means to access metadata fields
The new DAQ version records a few extra fields in the `METADATA` section of files, including start time and DAQ version. It should be possible to get this information through EXtra-data.
Complication: we allow combining data from more than one run. What should happen where t... | 0.0 | 13a2af8210d71d8a5e97d6e94a36091fc2ebd458 | [
"extra_data/tests/test_reader_mockdata.py::test_run_metadata[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_open_run[1.0]",
"extra_data/tests/test_reader_mockdata.py::test_run_metadata[0.5]",
"extra_data/tests/test_reader_mockdata.py::test_open_run[0.5]"
] | [
"extra_data/tests/test_components.py::test_get_array[1.0]",
"extra_data/tests/test_components.py::test_iterate[1.0]",
"extra_data/tests/test_components.py::test_get_array_pulse_indexes_reduced_data[1.0]",
"extra_data/tests/test_components.py::test_identify_multimod_detectors[1.0]",
"extra_data/tests/test_co... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-05-04 10:10:30+00:00 | bsd-3-clause | 238 | |
European-XFEL__EXtra-data-222 | diff --git a/extra_data/keydata.py b/extra_data/keydata.py
index 86fc141..167b173 100644
--- a/extra_data/keydata.py
+++ b/extra_data/keydata.py
@@ -53,11 +53,14 @@ class KeyData:
"""An ordered list of chunks containing data"""
if self._cached_chunks is None:
self._cached_chunks = sorted(... | European-XFEL/EXtra-data | b738290e6dbb09ed2906f43f985cce9f16513ba3 | diff --git a/extra_data/tests/test_keydata.py b/extra_data/tests/test_keydata.py
index cb7406f..abdf9e8 100644
--- a/extra_data/tests/test_keydata.py
+++ b/extra_data/tests/test_keydata.py
@@ -68,6 +68,10 @@ def test_nodata(mock_fxe_raw_run):
assert arr.shape == (0, 255, 1024)
assert arr.dtype == np.dtype('u2... | Can't instantiate multi-module detector access if any module has no data
This happens a lot with LPD data. It looks like the root cause is a problem with `.data_counts()`.
```python
run = open_run(2729, 44)
LPD1M(run.select_trains(np.s_[:100])
```
```
----------------------------------------------------------... | 0.0 | b738290e6dbb09ed2906f43f985cce9f16513ba3 | [
"extra_data/tests/test_keydata.py::test_data_counts_empty[1.0]",
"extra_data/tests/test_keydata.py::test_nodata[1.0]",
"extra_data/tests/test_keydata.py::test_nodata[0.5]",
"extra_data/tests/test_keydata.py::test_data_counts_empty[0.5]"
] | [
"extra_data/tests/test_keydata.py::test_get_keydata[1.0]",
"extra_data/tests/test_keydata.py::test_drop_empty_trains[1.0]",
"extra_data/tests/test_keydata.py::test_iter_trains[1.0]",
"extra_data/tests/test_keydata.py::test_split_trains[1.0]",
"extra_data/tests/test_keydata.py::test_data_counts[1.0]",
"ext... | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-09-27 11:02:16+00:00 | bsd-3-clause | 239 | |
European-XFEL__EXtra-data-257 | diff --git a/.github/dependabot/constraints.txt b/.github/dependabot/constraints.txt
index ee3a594..7cfce9f 100644
--- a/.github/dependabot/constraints.txt
+++ b/.github/dependabot/constraints.txt
@@ -1,3 +1,4 @@
+coverage==6.1.2
cycler==0.11.0
h5py<3.7.0
karabo-bridge==0.6.1
diff --git a/extra_data/keydata.py b/ext... | European-XFEL/EXtra-data | dac73a279511b033937bde2f1b239c0dd80b657b | diff --git a/extra_data/tests/test_keydata.py b/extra_data/tests/test_keydata.py
index 2d107b1..3930cfb 100644
--- a/extra_data/tests/test_keydata.py
+++ b/extra_data/tests/test_keydata.py
@@ -2,8 +2,11 @@ import os
import numpy as np
import pytest
+import h5py
+
from extra_data import RunDirectory, H5File
from e... | AssertionError in .data_counts(labelled=False)
@yohey-uemura discovered this over the weekend. When writing this method, I had overlooked the possibility of having a selected train which doesn't correspond to any data for the given source. For instance, in this run, LPD08 starts from train 1232492275, but other sources... | 0.0 | dac73a279511b033937bde2f1b239c0dd80b657b | [
"extra_data/tests/test_keydata.py::test_data_counts_missing_train"
] | [
"extra_data/tests/test_keydata.py::test_iter_trains[0.5]",
"extra_data/tests/test_keydata.py::test_drop_empty_trains[0.5]",
"extra_data/tests/test_keydata.py::test_data_counts[0.5]",
"extra_data/tests/test_keydata.py::test_get_keydata[0.5]",
"extra_data/tests/test_keydata.py::test_file_no_trains[0.5]",
"e... | {
"failed_lite_validators": [
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2021-11-29 15:38:38+00:00 | bsd-3-clause | 240 | |
European-XFEL__EXtra-data-375 | diff --git a/extra_data/reader.py b/extra_data/reader.py
index 21ad0f4..90643e5 100644
--- a/extra_data/reader.py
+++ b/extra_data/reader.py
@@ -1398,7 +1398,9 @@ def RunDirectory(
if _use_voview and (sel_files == files):
voview_file_acc = voview.find_file_valid(path)
if voview_file_acc is not No... | European-XFEL/EXtra-data | 2ae9f5eafd9a7661c653cbb57eb6f25373fe519c | diff --git a/extra_data/tests/test_voview.py b/extra_data/tests/test_voview.py
index 3f0bb96..3179802 100644
--- a/extra_data/tests/test_voview.py
+++ b/extra_data/tests/test_voview.py
@@ -35,6 +35,10 @@ def test_use_voview(mock_spb_raw_run, tmp_path):
assert 'SPB_DET_AGIPD1M-1/DET/0CH0:xtdf' in run.instrument_sou... | RunDirectory does not work as context manager when voview file present
[In the Jungfrau correction notebook, the raw run files are opened using a context manager](https://git.xfel.eu/detectors/pycalibration/-/blob/master/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb#L697).
This works fine when no v... | 0.0 | 2ae9f5eafd9a7661c653cbb57eb6f25373fe519c | [
"extra_data/tests/test_voview.py::test_use_voview[0.5]",
"extra_data/tests/test_voview.py::test_use_voview[1.0]"
] | [
"extra_data/tests/test_voview.py::test_main[0.5]",
"extra_data/tests/test_voview.py::test_combine_voview[0.5]",
"extra_data/tests/test_voview.py::test_main[1.0]",
"extra_data/tests/test_voview.py::test_combine_voview[1.0]",
"extra_data/tests/test_voview.py::test_voview_paths"
] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2023-01-26 17:04:14+00:00 | bsd-3-clause | 241 | |
Eyepea__aiosip-111 | diff --git a/aiosip/transaction.py b/aiosip/transaction.py
index da61942..4f2b0ab 100644
--- a/aiosip/transaction.py
+++ b/aiosip/transaction.py
@@ -145,6 +145,9 @@ class FutureTransaction(BaseTransaction):
self.dialog.end_transaction(self)
def _result(self, msg):
+ if self.authentification:
+ ... | Eyepea/aiosip | 3219ca46cdfd115a72101d92cd1f717f78d9f7b9 | diff --git a/tests/test_sip_scenario.py b/tests/test_sip_scenario.py
index d38e7c3..fdb1a89 100644
--- a/tests/test_sip_scenario.py
+++ b/tests/test_sip_scenario.py
@@ -92,6 +92,53 @@ async def test_authentication(test_server, protocol, loop, from_details, to_deta
await app.close()
+async def test_authenticati... | Improper handling of 401 authentication failures
In a call flow such as
* send REGISTER
* get 401 response with auth challenge
* send REGISTER with valid authentication
* get 401 response with no challenge (ie: your credentials are fine, but still denied)
The client will continue to retransmit the request wit... | 0.0 | 3219ca46cdfd115a72101d92cd1f717f78d9f7b9 | [
"tests/test_sip_scenario.py::test_notify[tcp]"
] | [] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2018-04-23 21:51:49+00:00 | apache-2.0 | 242 | |
F5Networks__f5-icontrol-rest-python-115 | diff --git a/icontrol/exceptions.py b/icontrol/exceptions.py
index 81aed7f..c897800 100644
--- a/icontrol/exceptions.py
+++ b/icontrol/exceptions.py
@@ -51,3 +51,9 @@ class InvalidInstanceNameOrFolder(BigIPInvalidURL):
class InvalidSuffixCollection(BigIPInvalidURL):
# must start with a '/' since there may be a pa... | F5Networks/f5-icontrol-rest-python | 5c43b0f6424a5f495c50fd2a318e172d5c3d7e37 | diff --git a/conftest.py b/conftest.py
index d11adba..b882e7b 100644
--- a/conftest.py
+++ b/conftest.py
@@ -93,3 +93,8 @@ def POST_URL(opt_bigip, opt_port):
def FAKE_URL(opt_bigip, opt_port):
fake_url = 'https://' + opt_bigip + ':' + opt_port + '/mgmt/tm/bogus/'
return fake_url
+
+
+@pytest.fixture
+def BAS... | Requests should be able to specify the subPath in addition to partition and name
In order to service the issue https://github.com/F5Networks/f5-common-python/issues/468, the icontrolsession needs to be able to support a subPath keyword argument to requests. This allows a consumer to get access to an object created in a... | 0.0 | 5c43b0f6424a5f495c50fd2a318e172d5c3d7e37 | [
"icontrol/test/test_session.py::test_correct_uri_construction_partitionless_and_nameless_subpath",
"icontrol/test/test_session.py::test_correct_uri_construction_nameless_subpath",
"icontrol/test/test_session.py::test_correct_uri_construction_partitionless_and_suffixless_subpath",
"icontrol/test/test_session.p... | [
"icontrol/test/test_session.py::test_wrapped_delete_207_fail",
"icontrol/test/test_session.py::test_wrapped_post_success_with_json_and_data",
"icontrol/test/test_session.py::test_wrapped_get_207_fail",
"icontrol/test/test_session.py::test_wrapped_put_success_with_data",
"icontrol/test/test_session.py::test_... | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2016-09-21 04:29:30+00:00 | apache-2.0 | 243 | |
F5Networks__f5-icontrol-rest-python-124 | diff --git a/icontrol/session.py b/icontrol/session.py
index 6abdb0a..376541f 100644
--- a/icontrol/session.py
+++ b/icontrol/session.py
@@ -58,7 +58,7 @@ against the BigIP REST Server, by pre- and post- processing the above methods.
"""
from distutils.version import StrictVersion
-import functools
+from icontrol i... | F5Networks/f5-icontrol-rest-python | 4c5067c403a0018bd7b26bc64f43056a1fc54b6e | diff --git a/icontrol/test/unit/test_session.py b/icontrol/test/unit/test_session.py
index e1aa136..240505c 100644
--- a/icontrol/test/unit/test_session.py
+++ b/icontrol/test/unit/test_session.py
@@ -15,8 +15,11 @@
import mock
import pytest
+from icontrol import __version__ as VERSION
from icontrol import session... | Update the User-Agent to include library and version
Add the library and version to the user agent header that is sent to the BIG-IP so that it can be logged to track usage and help debug problems. This needs to be done in a way that allows users of this library to add additional strings to the end of the header.
T... | 0.0 | 4c5067c403a0018bd7b26bc64f43056a1fc54b6e | [
"icontrol/test/unit/test_session.py::test__append_user_agent",
"icontrol/test/unit/test_session.py::test_append_user_agent_empty_start",
"icontrol/test/unit/test_session.py::test___init__user_agent",
"icontrol/test/unit/test_session.py::test___init__with_additional_user_agent"
] | [
"icontrol/test/unit/test_session.py::test_incorrect_uri_construction_bad_scheme",
"icontrol/test/unit/test_session.py::test_correct_uri_construction_partitionless_subpath",
"icontrol/test/unit/test_session.py::test_iCRS_with_invalid_construction",
"icontrol/test/unit/test_session.py::test_incorrect_uri_constr... | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2016-11-23 05:04:06+00:00 | apache-2.0 | 244 | |
F5Networks__f5-icontrol-rest-python-125 | diff --git a/icontrol/session.py b/icontrol/session.py
index 376541f..d05ec3f 100644
--- a/icontrol/session.py
+++ b/icontrol/session.py
@@ -86,11 +86,22 @@ def _validate_icruri(base_uri):
scheme, netloc, path, _, _ = urlsplit(base_uri)
if scheme != 'https':
raise InvalidScheme(scheme)
- if not pa... | F5Networks/f5-icontrol-rest-python | 6499f3c6a59ebaa3863b9230a52c200b4f1762a4 | diff --git a/icontrol/test/unit/test_session.py b/icontrol/test/unit/test_session.py
index 240505c..9742ae4 100644
--- a/icontrol/test/unit/test_session.py
+++ b/icontrol/test/unit/test_session.py
@@ -55,6 +55,26 @@ def uparts_with_subpath():
return parts_dict
+@pytest.fixture()
+def uparts_shared():
+ part... | support rest-proxy URI
iWorkflow / BIG-IQ (?) support REST proxy URI. This makes it possible to apply tenant RBAC on the REST endpoints (i.e. limit a user to only be able to modify a single BIG-IP LTM pool in a single Partition).
Documented here: https://devcentral.f5.com/wiki/iControl.REST_proxy_APIs.ashx
Example o... | 0.0 | 6499f3c6a59ebaa3863b9230a52c200b4f1762a4 | [
"icontrol/test/unit/test_session.py::test_correct_uri_construction_mgmt_shared",
"icontrol/test/unit/test_session.py::test_incorrect_uri_construction_bad_mgmt_path",
"icontrol/test/unit/test_session.py::test_correct_uri_construction_mgmt_cm"
] | [
"icontrol/test/unit/test_session.py::test_wrapped_delete_207_fail",
"icontrol/test/unit/test_session.py::test_correct_uri_construction_partitionless_and_nameless",
"icontrol/test/unit/test_session.py::test_wrapped_get_success_with_suffix",
"icontrol/test/unit/test_session.py::test_wrapped_post_success_with_js... | {
"failed_lite_validators": [
"has_hyperlinks"
],
"has_test_patch": true,
"is_lite": false
} | 2016-12-22 01:35:09+00:00 | apache-2.0 | 245 | |
FactoryBoy__factory_boy-1006 | diff --git a/docs/reference.rst b/docs/reference.rst
index a7e9be0..9efd1a2 100644
--- a/docs/reference.rst
+++ b/docs/reference.rst
@@ -907,21 +907,22 @@ return value of the method:
Transformer
"""""""""""
-.. class:: Transformer(transform, value)
+.. class:: Transformer(default_value, *, transform)
A :class:`T... | FactoryBoy/factory_boy | 53b34d504fad05dd1887a7eb0056ce9516fd4646 | diff --git a/tests/test_declarations.py b/tests/test_declarations.py
index c9458ff..c49bbba 100644
--- a/tests/test_declarations.py
+++ b/tests/test_declarations.py
@@ -134,7 +134,7 @@ class IteratorTestCase(unittest.TestCase):
class TransformerTestCase(unittest.TestCase):
def test_transform(self):
- t =... | The unreleased `Transformer` has a conflicting API with the overall design
#### Description
For most declarations, I can override the default mechanism by passing an explicit value:
```python
>>> UserFactory().email
"john.doe@example.org"
>>> UserFactory(email="jane.doe@example.org").email
"jane.doe@example.org... | 0.0 | 53b34d504fad05dd1887a7eb0056ce9516fd4646 | [
"tests/test_declarations.py::OrderedDeclarationTestCase::test_errors",
"tests/test_declarations.py::DigTestCase::test_chaining",
"tests/test_declarations.py::MaybeTestCase::test_init",
"tests/test_declarations.py::SelfAttributeTestCase::test_default",
"tests/test_declarations.py::SelfAttributeTestCase::test... | [] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-03-17 19:56:38+00:00 | mit | 246 | |
FactoryBoy__factory_boy-1045 | diff --git a/docs/orms.rst b/docs/orms.rst
index 3839707..5967e1b 100644
--- a/docs/orms.rst
+++ b/docs/orms.rst
@@ -128,7 +128,11 @@ Extra fields
.. method:: __init__(self, password)
- :param str password: Default password.
+ :param str or None password: Default password.
+
+ .. note:: When t... | FactoryBoy/factory_boy | 63c2df43ea640adb08d68c2b09c542667691f588 | diff --git a/tests/test_django.py b/tests/test_django.py
index 19729e0..066d792 100644
--- a/tests/test_django.py
+++ b/tests/test_django.py
@@ -941,6 +941,22 @@ class PreventSignalsTestCase(django_test.TestCase):
self.assertTrue(self.handlers.created_during_instantiation.called)
+ def test_signal_recei... | Unusable password generator for Django
#### The problem
The recently added `Password` generator for Django is helpful, but it's not clear how to use it to create an unusable password (similar to calling `set_unusable_password` on the generated user).
#### Proposed solution
Django's `set_unusable_password` is a... | 0.0 | 63c2df43ea640adb08d68c2b09c542667691f588 | [
"tests/test_django.py::PreventSignalsTestCase::test_signal_receiver_order_restored_after_mute_signals"
] | [
"tests/test_django.py::ModelTests::test_cross_database",
"tests/test_django.py::ModelTests::test_unset_model",
"tests/test_django.py::DjangoPkSequenceTestCase::test_pk_creation",
"tests/test_django.py::DjangoPkSequenceTestCase::test_pk_first",
"tests/test_django.py::DjangoPkSequenceTestCase::test_pk_force_v... | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2023-09-20 14:12:11+00:00 | mit | 247 | |
FactoryBoy__factory_boy-752 | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 0c6043a..5e919bc 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -43,6 +43,10 @@ The following aliases were removed:
- :py:meth:`get_random_state()` now represents the state of Faker and ``factory_boy`` fuzzy attributes.
- Add SQLAlchemy `... | FactoryBoy/factory_boy | 85543a502eed7a3d5de17669a98e761e92a78add | diff --git a/tests/test_dev_experience.py b/tests/test_dev_experience.py
new file mode 100644
index 0000000..6677b08
--- /dev/null
+++ b/tests/test_dev_experience.py
@@ -0,0 +1,58 @@
+# Copyright: See the LICENSE file.
+
+"""Tests about developer experience: help messages, errors, etc."""
+
+import collections
+import ... | 'Options' object has no attribute 'pre_declarations' is too ambiguous
#### The problem
Typo incorrectly specifying the Model for a Factory.
#### Proposed solution
Check if any specified factories are actually Models, in which case give a more clear error message.
#### Extra notes
Thanks for the good work on th... | 0.0 | 85543a502eed7a3d5de17669a98e761e92a78add | [
"tests/test_dev_experience.py::DeclarationTests::test_subfactory_to_factorylike_model",
"tests/test_dev_experience.py::DeclarationTests::test_subfactory_to_model"
] | [] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2020-06-26 08:09:30+00:00 | mit | 248 | |
Fatal1ty__mashumaro-122 | diff --git a/mashumaro/jsonschema/schema.py b/mashumaro/jsonschema/schema.py
index 90fa19f..65c3ec3 100644
--- a/mashumaro/jsonschema/schema.py
+++ b/mashumaro/jsonschema/schema.py
@@ -154,7 +154,7 @@ class Instance:
self.__builder = CodeBuilder(self.origin_type, type_args)
self.__builder.rese... | Fatal1ty/mashumaro | 41b90d2a0505c2a5d463150d880df8cf917227a8 | diff --git a/tests/test_jsonschema/test_jsonschema_generation.py b/tests/test_jsonschema/test_jsonschema_generation.py
index 875d719..626f977 100644
--- a/tests/test_jsonschema/test_jsonschema_generation.py
+++ b/tests/test_jsonschema/test_jsonschema_generation.py
@@ -126,6 +126,7 @@ def test_jsonschema_for_dataclass()... | JSON Schema generator doesn't honor `default_factory`
* mashumaro version: 3.7
* Python version: 3.11 (but 3.10 is the same)
* Operating System: macOS Ventura
### Description
See the full code and output below. When using default value, directly or via `field(default=...)` the schema correctly recognizes the fi... | 0.0 | 41b90d2a0505c2a5d463150d880df8cf917227a8 | [
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_dataclass"
] | [
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_any",
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_literal",
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_special_typing_primitives",
"tests/test_jsonschema/test_jsonschema_gener... | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-06-30 21:12:15+00:00 | apache-2.0 | 249 | |
Fatal1ty__mashumaro-142 | diff --git a/mashumaro/jsonschema/schema.py b/mashumaro/jsonschema/schema.py
index 9dc6edc..34760e8 100644
--- a/mashumaro/jsonschema/schema.py
+++ b/mashumaro/jsonschema/schema.py
@@ -178,7 +178,7 @@ class Instance:
if f_default is MISSING:
f_default = self._self_builder.namespace.get(f_n... | Fatal1ty/mashumaro | 89f4b1ad2048877e72dc4c86a3c532683753ea8a | diff --git a/tests/test_jsonschema/test_jsonschema_generation.py b/tests/test_jsonschema/test_jsonschema_generation.py
index 5e88282..6b5404d 100644
--- a/tests/test_jsonschema/test_jsonschema_generation.py
+++ b/tests/test_jsonschema/test_jsonschema_generation.py
@@ -118,6 +118,30 @@ if PY_39_MIN:
Ts = TypeVarTuple("... | Third party default is not reflected in the generated JSON Schema
* mashumaro version: 3.9
* Python version: 3.11
* Operating System: MacOS 3.13.1
### Description
```python
from dataclasses import dataclass
from mashumaro.config import BaseConfig
from mashumaro.jsonschema import build_json_schema
def as_s... | 0.0 | 89f4b1ad2048877e72dc4c86a3c532683753ea8a | [
"tests/test_jsonschema/test_jsonschema_generation.py::test_third_party_overridden_serialization_method"
] | [
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_dataclass",
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_any",
"tests/test_jsonschema/test_jsonschema_generation.py::test_jsonschema_for_literal",
"tests/test_jsonschema/test_jsonschema_generation.py::test_j... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2023-08-21 15:43:35+00:00 | apache-2.0 | 250 | |
Fatal1ty__mashumaro-146 | diff --git a/mashumaro/core/meta/code/builder.py b/mashumaro/core/meta/code/builder.py
index 7ba9d0e..00c16db 100644
--- a/mashumaro/core/meta/code/builder.py
+++ b/mashumaro/core/meta/code/builder.py
@@ -330,6 +330,7 @@ class CodeBuilder:
# prevent RecursionError
field=discr.f... | Fatal1ty/mashumaro | 8c32badea5a5005e2243fd8c0ec8aa0dcc6b8c5d | diff --git a/tests/test_discriminated_unions/test_parent_by_field.py b/tests/test_discriminated_unions/test_parent_by_field.py
index 1f0b7d0..d1a9b5b 100644
--- a/tests/test_discriminated_unions/test_parent_by_field.py
+++ b/tests/test_discriminated_unions/test_parent_by_field.py
@@ -145,6 +145,33 @@ class Bar(DataClas... | Allow discrimination based on a key that is not part of the model
**Is your feature request related to a problem? Please describe.**
I'am using mashumaro as (de)serialization backend of my [AST library](https://github.com/mishamsk/pyoak/)
What this means is that I (de)serialize huge (millions of nodes) nested datac... | 0.0 | 8c32badea5a5005e2243fd8c0ec8aa0dcc6b8c5d | [
"tests/test_discriminated_unions/test_parent_by_field.py::test_by_subtypes[variant_data0-variant0]",
"tests/test_discriminated_unions/test_parent_by_field.py::test_by_subtypes[variant_data1-variant1]",
"tests/test_discriminated_unions/test_parent_by_field.py::test_by_subtypes[variant_data2-variant2]",
"tests/... | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_issue_reference",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-08-23 20:11:28+00:00 | apache-2.0 | 251 | |
Fatal1ty__mashumaro-185 | diff --git a/README.md b/README.md
index e224048..3dc602a 100644
--- a/README.md
+++ b/README.md
@@ -2020,7 +2020,7 @@ It has the following parameters that affects class selection rules:
by which all the variants can be distinguished
* `include_subtypes` — allow to deserialize subclasses
* `include_supertypes` — a... | Fatal1ty/mashumaro | 6cd3924476872a913faf68b5165e2620c645abbd | diff --git a/tests/test_discriminated_unions/test_parent_via_config.py b/tests/test_discriminated_unions/test_parent_via_config.py
index 6b9dd90..d73f4db 100644
--- a/tests/test_discriminated_unions/test_parent_via_config.py
+++ b/tests/test_discriminated_unions/test_parent_via_config.py
@@ -426,6 +426,52 @@ class _Var... | Allow for more complex logic for subclass Discrimnator field matching
**Is your feature request related to a problem? Please describe.**
In building a deserializer for a large complex configuration file, some subclasses have identical shapes, but it would still be useful to distinguish by a `type` field. Unfortunately... | 0.0 | 6cd3924476872a913faf68b5165e2620c645abbd | [
"tests/test_discriminated_unions/test_parent_via_config.py::test_by_subtypes_with_custom_variant_tagger_and_multiple_tags",
"tests/test_discriminated_unions/test_union_by_field.py::test_by_field_with_subtypes_with_custom_variant_tagger_and_multiple_tags"
] | [
"tests/test_discriminated_unions/test_parent_via_config.py::test_by_subtypes",
"tests/test_discriminated_unions/test_parent_via_config.py::test_by_supertypes",
"tests/test_discriminated_unions/test_parent_via_config.py::test_by_field_with_subtypes",
"tests/test_discriminated_unions/test_parent_via_config.py::... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-12-23 12:39:31+00:00 | apache-2.0 | 252 | |
Fatal1ty__mashumaro-94 | diff --git a/mashumaro/config.py b/mashumaro/config.py
index 719e249..6c8bad4 100644
--- a/mashumaro/config.py
+++ b/mashumaro/config.py
@@ -10,6 +10,15 @@ else:
from typing_extensions import Literal # type: ignore
+__all__ = [
+ "BaseConfig",
+ "TO_DICT_ADD_BY_ALIAS_FLAG",
+ "TO_DICT_ADD_OMIT_NONE_F... | Fatal1ty/mashumaro | 76381804fe0ddd6eec7b9aabb7dddb950eca2b47 | diff --git a/tests/test_config.py b/tests/test_config.py
index 17f0abb..c7ffa68 100644
--- a/tests/test_config.py
+++ b/tests/test_config.py
@@ -142,6 +142,7 @@ def test_serialization_strategy():
class DataClass(DataClassDictMixin):
a: int
b: str
+ c: int
class Config(BaseConfig... | Inconsistent Application of serialization_strategy
* mashumaro version: 3.2 and 3.3
* Python version: 3.10
* Operating System: macOS
### Description
There is an apparent regression in serialization behavior when the serialization_strategy object is being used and there are multiple properties of the same type o... | 0.0 | 76381804fe0ddd6eec7b9aabb7dddb950eca2b47 | [
"tests/test_config.py::test_serialization_strategy",
"tests/test_forward_refs/test_baz.py::test_class_with_base_in_another_module"
] | [
"tests/test_config.py::test_config_without_base_config_base",
"tests/test_config.py::test_debug_false_option",
"tests/test_config.py::test_omit_none_code_generation_flag",
"tests/test_config.py::test_no_omit_none_code_generation_flag",
"tests/test_config.py::test_omit_none_flag_for_inner_class_without_it",
... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-01-06 19:50:23+00:00 | apache-2.0 | 253 | |
GAA-UAM__scikit-fda-142 | diff --git a/skfda/representation/_functional_data.py b/skfda/representation/_functional_data.py
index a1458587..e423b205 100644
--- a/skfda/representation/_functional_data.py
+++ b/skfda/representation/_functional_data.py
@@ -6,16 +6,15 @@ objects of the package and contains some commons methods.
from abc import AB... | GAA-UAM/scikit-fda | 2e5f88a3ba9c97696fabcf44b86579d879a851d3 | diff --git a/tests/test_grid.py b/tests/test_grid.py
index 483a5cab..52a31d98 100644
--- a/tests/test_grid.py
+++ b/tests/test_grid.py
@@ -1,10 +1,10 @@
import unittest
-import numpy as np
import scipy.stats.mstats
-from skfda.exploratory import stats
+import numpy as np
from skfda import FDataGrid
+from skfda.e... | Problem with pandas methods
After update the neighbors brach (#112), I have an error on this line:
https://github.com/GAA-UAM/scikit-fda/blob/91d96eceee49400962515b8b10ee21d842fdc97f/examples/plot_k_neighbors_classification.py#L61
> Traceback (most recent call last):
File "plot_k_neighbors_classification.py", ... | 0.0 | 2e5f88a3ba9c97696fabcf44b86579d879a851d3 | [
"tests/test_grid.py::TestFDataGrid::test_copy_equals",
"tests/test_pandas.py::TestPandas::test_fdatagrid_series"
] | [
"tests/test_grid.py::TestFDataGrid::test_concatenate",
"tests/test_grid.py::TestFDataGrid::test_concatenate_coordinates",
"tests/test_grid.py::TestFDataGrid::test_coordinates",
"tests/test_grid.py::TestFDataGrid::test_gmean",
"tests/test_grid.py::TestFDataGrid::test_init",
"tests/test_grid.py::TestFDataGr... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2019-07-25 13:46:16+00:00 | bsd-3-clause | 255 | |
GIScience__openrouteservice-py-17 | diff --git a/openrouteservice/isochrones.py b/openrouteservice/isochrones.py
index 5e6850c..14a8d73 100644
--- a/openrouteservice/isochrones.py
+++ b/openrouteservice/isochrones.py
@@ -20,16 +20,17 @@ from openrouteservice import convert
def isochrones(client, locations,
- profile='driving-car',... | GIScience/openrouteservice-py | 0d3a56f242f668429f91f87dc9b4e7baf4fc581c | diff --git a/test/test_client.py b/test/test_client.py
index e45e60d..12aeb1a 100644
--- a/test/test_client.py
+++ b/test/test_client.py
@@ -74,19 +74,13 @@ class ClientTest(_test.TestCase):
# Assume more queries_per_minute than allowed by API policy and
# don't allow retries if API throws 'rate exce... | Implement smoothing parameter for isochrone endpoint | 0.0 | 0d3a56f242f668429f91f87dc9b4e7baf4fc581c | [
"test/test_isochrones.py::DistanceMatrixTest::test_all_params"
] | [
"test/test_isochrones.py::DistanceMatrixTest::test_basic_params",
"test/test_isochrones.py::DistanceMatrixTest::test_units_with_time",
"test/test_distance_matrix.py::DistanceMatrixTest::test_basic_params",
"test/test_distance_matrix.py::DistanceMatrixTest::test_all_params",
"test/test_client.py::ClientTest:... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2018-09-27 08:53:08+00:00 | apache-2.0 | 256 | |
GIScience__openrouteservice-py-31 | diff --git a/openrouteservice/__init__.py b/openrouteservice/__init__.py
index 6f697ff..d88a857 100644
--- a/openrouteservice/__init__.py
+++ b/openrouteservice/__init__.py
@@ -17,7 +17,7 @@
# the License.
#
-__version__ = "1.1.6"
+__version__ = "1.1.7"
# Make sure QGIS plugin can import openrouteservice-py
di... | GIScience/openrouteservice-py | a93c3ac62f31de39e92901598e779dde5ad7a306 | diff --git a/test/test_geocode.py b/test/test_geocode.py
index c4d8ab6..24ecc80 100644
--- a/test/test_geocode.py
+++ b/test/test_geocode.py
@@ -83,7 +83,7 @@ class GeocodingPeliasTest(_test.TestCase):
self.assertEqual(1, len(responses.calls))
self.assertURLEqual(
- 'https://api.openroute... | 'Country' restriction has wrong parameter
`boundary.country` instead of `country` for `/search` and `/reverse`, `/autocomplete` is fine. | 0.0 | a93c3ac62f31de39e92901598e779dde5ad7a306 | [
"test/test_geocode.py::GeocodingPeliasTest::test_full_reverse",
"test/test_geocode.py::GeocodingPeliasTest::test_full_search",
"test/test_isochrones.py::IsochronesTest::test_all_params",
"test/test_isochrones.py::IsochronesTest::test_basic_params"
] | [
"test/test_geocode.py::GeocodingPeliasTest::test_full_autocomplete",
"test/test_geocode.py::GeocodingPeliasTest::test_full_structured"
] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2019-01-24 06:25:17+00:00 | apache-2.0 | 257 | |
GIScience__openrouteservice-py-42 | diff --git a/docs/source/openrouteservice.rst b/docs/source/openrouteservice.rst
index 0139f7b..fff8892 100644
--- a/docs/source/openrouteservice.rst
+++ b/docs/source/openrouteservice.rst
@@ -76,14 +76,6 @@ openrouteservice\.optimization module
:undoc-members:
:show-inheritance:
-openrouteservice\.validato... | GIScience/openrouteservice-py | e8eb1e0ad4e13c810440c087512080b9ecf809b5 | diff --git a/test/test_helper.py b/test/test_helper.py
index 08afc2c..916002e 100644
--- a/test/test_helper.py
+++ b/test/test_helper.py
@@ -27,10 +27,16 @@ ENDPOINT_DICT = {
'suppress_warnings': False,
'instructions': 'false',
'instructions_format': 'html',
+ 'alternative_routes': {
+... | Add skip_segments and alternative_routes parameters | 0.0 | e8eb1e0ad4e13c810440c087512080b9ecf809b5 | [
"test/test_optimization.py::OptimizationTest::test_jobs_vehicles_classes",
"test/test_optimization.py::OptimizationTest::test_full_optimization"
] | [] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-05-11 19:29:16+00:00 | apache-2.0 | 258 | |
GIScience__openrouteservice-py-67 | diff --git a/openrouteservice/client.py b/openrouteservice/client.py
index ea763c4..3711d80 100644
--- a/openrouteservice/client.py
+++ b/openrouteservice/client.py
@@ -20,6 +20,7 @@
from datetime import datetime
from datetime import timedelta
+import cgi
import functools
import requests
import json
@@ -257,10 +... | GIScience/openrouteservice-py | ed5e5cd8ec406fad05381bf7bda64a77ce4bfe89 | diff --git a/test/test_directions.py b/test/test_directions.py
index b6e2db8..6fb3b66 100644
--- a/test/test_directions.py
+++ b/test/test_directions.py
@@ -25,7 +25,7 @@ import test as _test
from copy import deepcopy
from openrouteservice import exceptions
-from test.test_helper import ENDPOINT_DICT
+from test.tes... | JSONDecodeError when requesting directions in gpx format
<!-- If you have a question rather than an actual issue, pls use our forum:-->
<!-- https://ask.openrouteservice.org/c/sdks-->
#### Here's what I did
<!-- best paste the results of 'dry_run' (see README.md), so we can see your configuration -->
```coord... | 0.0 | ed5e5cd8ec406fad05381bf7bda64a77ce4bfe89 | [
"test/test_directions.py::DirectionsTest::test_directions_gpx",
"test/test_directions.py::DirectionsTest::test_optimized_waypoints"
] | [
"test/test_directions.py::DirectionsTest::test_format_out_deprecation",
"test/test_directions.py::DirectionsTest::test_optimized_waypoints_shuffle"
] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2021-07-25 19:39:05+00:00 | apache-2.0 | 259 | |
GSTT-CSC__hazen-312 | diff --git a/hazenlib/tasks/acr_geometric_accuracy.py b/hazenlib/tasks/acr_geometric_accuracy.py
new file mode 100644
index 0000000..b71f00b
--- /dev/null
+++ b/hazenlib/tasks/acr_geometric_accuracy.py
@@ -0,0 +1,241 @@
+"""
+ACR Geometric Accuracy
+https://www.acraccreditation.org/-/media/acraccreditation/documents/mr... | GSTT-CSC/hazen | 8aaa233168a543c493961f193802fc4607ac4997 | diff --git a/.github/workflows/test_cli.yml b/.github/workflows/test_cli.yml
index 9082b13..203650d 100644
--- a/.github/workflows/test_cli.yml
+++ b/.github/workflows/test_cli.yml
@@ -55,6 +55,11 @@ jobs:
run: |
hazen acr_ghosting tests/data/acr/Siemens --report
+ - name: test acr_geometric_... | [ACR5] Geometric accuracy
For the geometric accuracy - currently under slice width in hazen - use slice 1 and slice 5 of an ACR_TRA_T1_NORMOFF series. In slice 1, measure the diameter of the phantom: top-to-bottom and left-to-right and on slice 5 measure the diameter of the phantom in 4 directions: top-to-bottom, left... | 0.0 | 8aaa233168a543c493961f193802fc4607ac4997 | [
"tests/test_acr_geometric_accuracy.py::TestACRGeometricAccuracySiemens::test_geo_accuracy_slice1",
"tests/test_acr_geometric_accuracy.py::TestACRGeometricAccuracySiemens::test_geo_accuracy_slice5",
"tests/test_acr_geometric_accuracy.py::TestACRGeometricAccuracySiemens::test_object_centre",
"tests/test_acr_geo... | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_media",
"has_added_files"
],
"has_test_patch": true,
"is_lite": false
} | 2023-01-18 12:44:41+00:00 | apache-2.0 | 260 | |
GSTT-CSC__hazen-363 | diff --git a/hazenlib/__init__.py b/hazenlib/__init__.py
index dafcf1a..309c585 100644
--- a/hazenlib/__init__.py
+++ b/hazenlib/__init__.py
@@ -112,7 +112,7 @@ import importlib
import inspect
import logging
import sys
-import pprint
+import json
import os
from docopt import docopt
@@ -156,7 +156,6 @@ def init_t... | GSTT-CSC/hazen | 5d9e4d747ccd1c908ac5cc0bfbbdb60c470e9bfb | diff --git a/tests/test_uniformity.py b/tests/test_uniformity.py
index 8fe2611..2fa43ec 100644
--- a/tests/test_uniformity.py
+++ b/tests/test_uniformity.py
@@ -18,8 +18,8 @@ class TestUniformity(unittest.TestCase):
def test_uniformity(self):
results = self.uniformity_task.run()
key = self.unifor... | Improve displaying results on terminal
PrettyPrinter could be replaced with `json.dumps()` that can format and display the result dictionary in a simple structured way with less configuration needed.
currently with PrettyPrint: (more compact)
<img width="759" alt="Screenshot 2023-07-15 at 18 27 16" src="https://git... | 0.0 | 5d9e4d747ccd1c908ac5cc0bfbbdb60c470e9bfb | [
"tests/test_uniformity.py::TestUniformity::test_uniformity",
"tests/test_uniformity.py::TestSagUniformity::test_uniformity",
"tests/test_uniformity.py::TestCorUniformity::test_uniformity"
] | [] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-07-28 18:22:43+00:00 | apache-2.0 | 261 | |
GazzolaLab__PyElastica-123 | diff --git a/docs/api/damping.rst b/docs/api/damping.rst
index 510496e..3daa919 100644
--- a/docs/api/damping.rst
+++ b/docs/api/damping.rst
@@ -15,6 +15,7 @@ Damping is used to numerically stabilize the simulations.
DamperBase
ExponentialDamper
+ LaplaceDissipationFilter
Compatibility
~~~~~~~~~~~~~
@@ ... | GazzolaLab/PyElastica | 2008f299028561d232f80e7bd993585e96615309 | diff --git a/tests/test_dissipation.py b/tests/test_dissipation.py
index cfa1637..9ea021a 100644
--- a/tests/test_dissipation.py
+++ b/tests/test_dissipation.py
@@ -1,11 +1,15 @@
__doc__ = """ Test Dissipation module for in Elastica implementation"""
# System imports
+from elastica.dissipation import DamperBase, Ex... | Filter Damping addition to the damping module
The Filter Damping method (adapted from [here](https://aip.scitation.org/doi/full/10.1063/1.2728935?casa_token=9v62oae0XN0AAAAA%3AhfV-OcYFBb_uB6cE0yBfsdf9HMIem1vZ0JJVhoJT-WNgxoM5jPXAPfqctpkn3aXP5wN75sVnHLFw)), which basically damps velocities similar to a low pass filter, h... | 0.0 | 2008f299028561d232f80e7bd993585e96615309 | [
"tests/test_dissipation.py::test_exponential_damper",
"tests/test_dissipation.py::test_laplace_dissipation_filter_for_constant_field[2]",
"tests/test_dissipation.py::test_laplace_dissipation_filter_init[3]",
"tests/test_dissipation.py::test_damper_base_properties_access",
"tests/test_dissipation.py::test_la... | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_issue_reference",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2022-07-04 00:44:47+00:00 | mit | 262 | |
GazzolaLab__PyElastica-249 | diff --git a/elastica/__init__.py b/elastica/__init__.py
index 7622bf2..f60bc90 100644
--- a/elastica/__init__.py
+++ b/elastica/__init__.py
@@ -71,3 +71,4 @@ from elastica.timestepper import (
)
from elastica.memory_block.memory_block_rigid_body import MemoryBlockRigidBody
from elastica.memory_block.memory_block_ro... | GazzolaLab/PyElastica | b271ad41fbeaa78fbd03887573b9a364c949ef5b | diff --git a/tests/test_restart.py b/tests/test_restart.py
index 0ba52df..0f814b2 100644
--- a/tests/test_restart.py
+++ b/tests/test_restart.py
@@ -12,6 +12,7 @@ from elastica.modules import (
CallBacks,
)
from elastica.restart import save_state, load_state
+import elastica as ea
class GenericSimulatorClas... | Possible Bug: Test restart functionality and applying constrains
We should test the below line in the restart code. We suspect it creates incorrect results, when we load and time-step.
https://github.com/GazzolaLab/PyElastica/blob/7b3fe2d0204a175c9e5e64265c70b9577b4ca8c9/elastica/restart.py#L92-L93 | 0.0 | b271ad41fbeaa78fbd03887573b9a364c949ef5b | [
"tests/test_restart.py::TestRestartFunctionsWithFeaturesUsingCosseratRod::test_save_restart_run_sim[1.0]",
"tests/test_restart.py::TestRestartFunctionsWithFeaturesUsingCosseratRod::test_save_restart_run_sim[0.2]"
] | [
"tests/test_restart.py::TestRestartFunctionsWithFeaturesUsingRigidBodies::test_restart_save_load",
"tests/test_restart.py::TestRestartFunctionsWithFeaturesUsingCosseratRod::test_restart_save_load"
] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-05-11 16:58:29+00:00 | mit | 263 | |
GazzolaLab__PyElastica-98 | diff --git a/elastica/interaction.py b/elastica/interaction.py
index 7504670..587598d 100644
--- a/elastica/interaction.py
+++ b/elastica/interaction.py
@@ -8,14 +8,11 @@ __all__ = [
import numpy as np
-from elastica.utils import MaxDimension
from elastica.external_forces import NoForces
-import numba
from n... | GazzolaLab/PyElastica | cbc24d9865532d5dbc87e1c5bd18645a02e1c498 | diff --git a/tests/test_interaction.py b/tests/test_interaction.py
index 82ac01a..a7c7a84 100644
--- a/tests/test_interaction.py
+++ b/tests/test_interaction.py
@@ -8,6 +8,7 @@ from elastica.interaction import (
InteractionPlane,
find_slipping_elements,
AnisotropicFrictionalPlane,
+ node_to_element_ma... | Converting nodal velocities to element velocities
In PyElastica we store `velocity` on nodes and for some computations (i.e. rod damping, plane damping or stokes flow) we have to convert `velocity` from `nodes` to `elements`. Currently we are averaging the neigboring node velocity to compute element velocity using the ... | 0.0 | cbc24d9865532d5dbc87e1c5bd18645a02e1c498 | [
"tests/test_interaction.py::TestInteractionPlane::test_interaction_without_contact[2]",
"tests/test_interaction.py::TestInteractionPlane::test_interaction_without_contact[3]",
"tests/test_interaction.py::TestInteractionPlane::test_interaction_without_contact[5]",
"tests/test_interaction.py::TestInteractionPla... | [] | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2022-06-01 04:26:40+00:00 | mit | 264 | |
GeneralMills__pytrends-409 | diff --git a/README.md b/README.md
index d348f16..3d4d350 100644
--- a/README.md
+++ b/README.md
@@ -39,7 +39,7 @@ Only good until Google changes their backend again :-P. When that happens feel f
## Requirements
-* Written for both Python 2.7+ and Python 3.3+
+* Written for Python 3.3+
* Requires Requests, lxml, ... | GeneralMills/pytrends | 938ab0b7f71ce3827605322cf4475d1756f40909 | diff --git a/pytrends/test_trendReq.py b/pytrends/test_trendReq.py
index 80a4748..8c3efd3 100644
--- a/pytrends/test_trendReq.py
+++ b/pytrends/test_trendReq.py
@@ -1,4 +1,5 @@
from unittest import TestCase
+import pandas.api.types as ptypes
from pytrends.request import TrendReq
@@ -29,6 +30,31 @@ class TestTrend... | Pytrends error 400
Hi all,
I am trying to pull some data from Google Trends but I keep getting the error "The request failed: Google returned a response with code 400.". I think it might has something to do with pytrend.interest_over_time() but I haven't been able to fix it.
import csv
import time
import pand... | 0.0 | 938ab0b7f71ce3827605322cf4475d1756f40909 | [
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_time_bad_gprop",
"pytrends/test_trendReq.py::TestTrendReq::test_ispartial_dtype",
"pytrends/test_trendReq.py::TestTrendReq::test_ispartial_dtype_timeframe_all"
] | [
"pytrends/test_trendReq.py::TestTrendReq::test__get_data",
"pytrends/test_trendReq.py::TestTrendReq::test__tokens",
"pytrends/test_trendReq.py::TestTrendReq::test_build_payload",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_by_region",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2020-06-09 14:34:48+00:00 | apache-2.0 | 265 | |
GeneralMills__pytrends-410 | diff --git a/README.md b/README.md
index d348f16..3d4d350 100644
--- a/README.md
+++ b/README.md
@@ -39,7 +39,7 @@ Only good until Google changes their backend again :-P. When that happens feel f
## Requirements
-* Written for both Python 2.7+ and Python 3.3+
+* Written for Python 3.3+
* Requires Requests, lxml, ... | GeneralMills/pytrends | 938ab0b7f71ce3827605322cf4475d1756f40909 | diff --git a/pytrends/test_trendReq.py b/pytrends/test_trendReq.py
index 80a4748..1a70d6b 100644
--- a/pytrends/test_trendReq.py
+++ b/pytrends/test_trendReq.py
@@ -1,4 +1,5 @@
from unittest import TestCase
+import pandas.api.types as ptypes
from pytrends.request import TrendReq
@@ -47,14 +48,27 @@ class TestTren... | isPartial field dtype is "object" instead of "bool" for gprop='news' and timeframe='all'
pytrends 4.7.2
from pytrends.request import TrendReq
pytrend = TrendReq()
pytrend.build_payload(kw_list=["apple"], gprop='news', timeframe='all')
result = pytrend.interest_over_time()
print(result.dtypes)
Output:
apple ... | 0.0 | 938ab0b7f71ce3827605322cf4475d1756f40909 | [
"pytrends/test_trendReq.py::TestTrendReq::test_ispartial_dtype",
"pytrends/test_trendReq.py::TestTrendReq::test_ispartial_dtype_timeframe_all"
] | [
"pytrends/test_trendReq.py::TestTrendReq::test__get_data",
"pytrends/test_trendReq.py::TestTrendReq::test__tokens",
"pytrends/test_trendReq.py::TestTrendReq::test_build_payload",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_by_region",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-06-09 15:05:02+00:00 | apache-2.0 | 266 | |
GeneralMills__pytrends-478 | diff --git a/README.md b/README.md
index 7515d36..d7cf567 100644
--- a/README.md
+++ b/README.md
@@ -7,10 +7,10 @@ Unofficial API for Google Trends
Allows simple interface for automating downloading of reports from Google Trends.
Only good until Google changes their backend again :-P. When that happens feel free to ... | GeneralMills/pytrends | bac0caea18817630e98b503a38e9b445e7b5add1 | diff --git a/pytrends/test_trendReq.py b/pytrends/test_trendReq.py
index 8c3efd3..3e774b9 100644
--- a/pytrends/test_trendReq.py
+++ b/pytrends/test_trendReq.py
@@ -75,6 +75,11 @@ class TestTrendReq(TestCase):
pytrend.build_payload(kw_list=['pizza', 'bagel'])
self.assertIsNotNone(pytrend.trending_sear... | Example in readme for extracting topic doesn't work
See [notebook](https://colab.research.google.com/drive/13tOcn6AyUGMBqRXcm6hcsVDT8qpEUOld#scrollTo=d057Oqr7GIE2), which follows the topic example in the readme:
```
from pytrends.request import TrendReq
pytrend = TrendReq(hl='en-US', tz=360)
pytrend.build_paylo... | 0.0 | bac0caea18817630e98b503a38e9b445e7b5add1 | [
"pytrends/test_trendReq.py::TestTrendReq::test_realtime_trending_searches"
] | [
"pytrends/test_trendReq.py::TestTrendReq::test__get_data",
"pytrends/test_trendReq.py::TestTrendReq::test__tokens",
"pytrends/test_trendReq.py::TestTrendReq::test_build_payload",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_by_region",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_... | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-06-02 05:08:47+00:00 | apache-2.0 | 267 | |
GeneralMills__pytrends-509 | diff --git a/pytrends/request.py b/pytrends/request.py
index 6cb9f8d..446cf41 100644
--- a/pytrends/request.py
+++ b/pytrends/request.py
@@ -299,13 +299,17 @@ class TrendReq(object):
return df
# rename the column with the search keyword
- df = df[['geoName', 'geoCode', 'value']].set_index... | GeneralMills/pytrends | e1eec7a4822f1a2005a2ab12236c411a1b0ca3c7 | diff --git a/pytrends/test_trendReq.py b/pytrends/test_trendReq.py
index 3e774b9..6a9f178 100644
--- a/pytrends/test_trendReq.py
+++ b/pytrends/test_trendReq.py
@@ -60,6 +60,11 @@ class TestTrendReq(TestCase):
pytrend.build_payload(kw_list=['pizza', 'bagel'])
self.assertIsNotNone(pytrend.interest_by_r... | "['geoCode'] not in index" when request CITY LEVEL interest_by_region Google trends
Hi, the pytrends API developers and maintainers,
Thank you for developing this great API and I'm now just starting to use it for my research.
I recently ran into a key error when I tried to get Google treands data on city level.
M... | 0.0 | e1eec7a4822f1a2005a2ab12236c411a1b0ca3c7 | [
"pytrends/test_trendReq.py::TestTrendReq::test_interest_by_region_city_resolution"
] | [
"pytrends/test_trendReq.py::TestTrendReq::test__get_data",
"pytrends/test_trendReq.py::TestTrendReq::test__tokens",
"pytrends/test_trendReq.py::TestTrendReq::test_build_payload",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_by_region",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2022-02-18 20:36:49+00:00 | apache-2.0 | 268 | |
GeneralMills__pytrends-518 | diff --git a/pytrends/request.py b/pytrends/request.py
index 446cf41..4644102 100644
--- a/pytrends/request.py
+++ b/pytrends/request.py
@@ -428,8 +428,7 @@ class TrendReq(object):
# forms = {'ajax': 1, 'pn': pn, 'htd': '', 'htv': 'l'}
req_json = self._get_data(
url=TrendReq.TRENDING_SEAR... | GeneralMills/pytrends | 0e887b8510c3023fb57796cb253fef03d688b2f7 | diff --git a/pytrends/test_trendReq.py b/pytrends/test_trendReq.py
index 6a9f178..ee2253c 100644
--- a/pytrends/test_trendReq.py
+++ b/pytrends/test_trendReq.py
@@ -85,6 +85,15 @@ class TestTrendReq(TestCase):
pytrend.build_payload(kw_list=['pizza', 'bagel'])
self.assertIsNotNone(pytrend.realtime_tren... | Bug on "suggestions" when "requests_args" is not empty
If requests_args is not empty, then in line 453 of the requests.py, the "self.requests_args" is included as kwargs and line 126 of the _get_data method includes it again. So it causes an error. | 0.0 | 0e887b8510c3023fb57796cb253fef03d688b2f7 | [
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_time_news",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_time_youtube",
"pytrends/test_trendReq.py::TestTrendReq::test_ispartial_dtype",
"pytrends/test_trendReq.py::TestTrendReq::test_ispartial_dtype_timeframe_all",
"pytrends/test_... | [
"pytrends/test_trendReq.py::TestTrendReq::test__get_data",
"pytrends/test_trendReq.py::TestTrendReq::test__tokens",
"pytrends/test_trendReq.py::TestTrendReq::test_build_payload",
"pytrends/test_trendReq.py::TestTrendReq::test_interest_over_time_bad_gprop",
"pytrends/test_trendReq.py::TestTrendReq::test_inte... | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2022-06-09 11:10:03+00:00 | apache-2.0 | 269 | |
GreenBuildingRegistry__usaddress-scourgify-12 | diff --git a/scourgify/normalize.py b/scourgify/normalize.py
index 4270b68..8827088 100644
--- a/scourgify/normalize.py
+++ b/scourgify/normalize.py
@@ -535,7 +535,8 @@ def normalize_occupancy_type(parsed_addr, default=None):
default = default if default is not None else 'UNIT'
occupancy_type_label = 'Occupan... | GreenBuildingRegistry/usaddress-scourgify | 29912c8c00bbb3d5c899fb64772ecf07d9020b1e | diff --git a/scourgify/tests/test_address_normalization.py b/scourgify/tests/test_address_normalization.py
index ac8ea09..66a9c42 100644
--- a/scourgify/tests/test_address_normalization.py
+++ b/scourgify/tests/test_address_normalization.py
@@ -263,6 +263,34 @@ class TestAddressNormalization(TestCase):
result ... | Valid occupancy types replaced by 'UNIT'
HI there, I appreciate your work on normalizing the US Address library!
I notice the following issue:
```
>>> from scourgify import normalize_address_record
>>> normalize_address_record('12345 Somewhere Street Apt 1, Town, MA 12345')
{'address_line_1': '12345 SOMEWHERE... | 0.0 | 29912c8c00bbb3d5c899fb64772ecf07d9020b1e | [
"scourgify/tests/test_address_normalization.py::TestAddressNormalization::test_normalize_occupancies"
] | [
"scourgify/tests/test_address_normalization.py::TestAddressNormalization::test_normalize_addr_dict",
"scourgify/tests/test_address_normalization.py::TestAddressNormalization::test_normalize_addr_str",
"scourgify/tests/test_address_normalization.py::TestAddressNormalization::test_normalize_address_record",
"sc... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2020-05-14 16:25:16+00:00 | mit | 270 | |
HBehrens__fixup_shaper_svg-3 | diff --git a/fixup_shaper_svg.py b/fixup_shaper_svg.py
index 2d304c5..0436b9c 100644
--- a/fixup_shaper_svg.py
+++ b/fixup_shaper_svg.py
@@ -61,13 +61,14 @@ def fixup_svg(infile, outfile):
svg = xml.etree.ElementTree.parse(infile)
for elem in svg.iter():
fixup_element(elem)
- svg.write(outfile, en... | HBehrens/fixup_shaper_svg | f28e93229db60d18bf6520e900b0ab84da5b6da5 | diff --git a/fixup_shaper_svg_tests.py b/fixup_shaper_svg_tests.py
index 362aa80..9e91696 100644
--- a/fixup_shaper_svg_tests.py
+++ b/fixup_shaper_svg_tests.py
@@ -1,6 +1,7 @@
import unittest
+import io
-from fixup_shaper_svg import length_value_without_spaces, style_attribute_without_fill_rule
+from fixup_shaper_s... | Improvement Request: Modification to get SVG preview working on the Origin
The current script (fixup_shaper_svg.py) is working as such.
Converted SVG files can be used and inserted on Origin.
However the SVG image preview is not working.
Reason for this is that in the output file the following information will be ... | 0.0 | f28e93229db60d18bf6520e900b0ab84da5b6da5 | [
"fixup_shaper_svg_tests.py::XmlFileEncoding::test_does_force_utf8"
] | [
"fixup_shaper_svg_tests.py::LengthWithUnit::test_ignore_invalid_numbers",
"fixup_shaper_svg_tests.py::LengthWithUnit::test_ignores_complex_attributes",
"fixup_shaper_svg_tests.py::LengthWithUnit::test_number_formats",
"fixup_shaper_svg_tests.py::LengthWithUnit::test_spacing",
"fixup_shaper_svg_tests.py::Sty... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2024-04-21 16:45:13+00:00 | mit | 271 | |
HDembinski__jacobi-16 | diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index d7ba3ca..d787190 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -47,5 +47,12 @@ repos:
rev: 'v0.971'
hooks:
- id: mypy
- args: [--allow-redefinition, --ignore-missing-imports, src]
+ args: [src]
pass_filename... | HDembinski/jacobi | 9b3811bb96b43f2a28f0d2c05ef570214ce50bf1 | diff --git a/test/test_propagate.py b/test/test_propagate.py
index 4975c5e..3f2e139 100644
--- a/test/test_propagate.py
+++ b/test/test_propagate.py
@@ -75,3 +75,66 @@ def test_11():
else:
xcov2 = xcov
assert_allclose(ycov, np.linalg.multi_dot([jac, xcov2, jac.T]))
+
+
+@pytest.mark.param... | propagate: support functions with multiple independent arguments
Often, one has a function that takes independent arguments. Propagating this currently is a bit cumbersome, one has to combine the arguments into a vector and the covariances into joint block covariance matrix. `propagate` could be made more flexible to m... | 0.0 | 9b3811bb96b43f2a28f0d2c05ef570214ce50bf1 | [
"test/test_propagate.py::test_two_arguments_1",
"test/test_propagate.py::test_two_arguments_2"
] | [
"test/test_propagate.py::test_00",
"test/test_propagate.py::test_01",
"test/test_propagate.py::test_10",
"test/test_propagate.py::test_11",
"test/test_propagate.py::test_cov_1d_2d[1]",
"test/test_propagate.py::test_cov_1d_2d[2]"
] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2022-08-14 11:00:32+00:00 | mit | 272 | |
HEPCloud__decisionengine-391 | diff --git a/package/rpm/install_section b/package/rpm/install_section
index 82c2966f..aa7d0ad1 100644
--- a/package/rpm/install_section
+++ b/package/rpm/install_section
@@ -28,3 +28,7 @@ echo "%dir %attr(0750,decisionengine,decisionengine) %{_sysconfdir}/decisionengi
mkdir -p %{buildroot}/%{_sysconfdir}/sysconfig
t... | HEPCloud/decisionengine | f6258c09a6452e1e2de324c828d8f4c990bd9664 | diff --git a/src/decisionengine/framework/modules/tests/test_translate_product_name.py b/src/decisionengine/framework/modules/tests/test_translate_product_name.py
new file mode 100644
index 00000000..cae42936
--- /dev/null
+++ b/src/decisionengine/framework/modules/tests/test_translate_product_name.py
@@ -0,0 +1,24 @@
... | Add postgresql.sql to distributed decisionengine rpm
There is a file src/decisionengine/framework/dataspace/datasources/postgresql.sql
which is needed to initialize the Postgres database. This is not currently packaged with the RPM.
Please add it to the RPM again.
Steve Timm
| 0.0 | f6258c09a6452e1e2de324c828d8f4c990bd9664 | [
"src/decisionengine/framework/modules/tests/test_translate_product_name.py::test_translate_none",
"src/decisionengine/framework/modules/tests/test_translate_product_name.py::test_translate_simple",
"src/decisionengine/framework/modules/tests/test_translate_product_name.py::test_translate_with_underscores",
"s... | [] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_added_files",
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2021-06-17 19:27:53+00:00 | bsd-3-clause | 273 | |
HEPData__hepdata_lib-259 | diff --git a/README.md b/README.md
index 6f9ba74..4b716ce 100644
--- a/README.md
+++ b/README.md
@@ -72,8 +72,8 @@ There are a few more examples available that can directly be run using the [bind
- [Reading TGraph and TGraphError from '.C' files](https://github.com/HEPData/hepdata_lib/blob/main/examples/read_c_file.ip... | HEPData/hepdata_lib | db53815f4963bd11cc62f88c9111f45134ccac67 | diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 251d276..b560594 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -25,7 +25,7 @@ jobs:
strategy:
matrix:
os: [ubuntu-latest]
- root-version: ["6.24", "6.26", "6.28", "6.30"]
+ roo... | Add flag to disable features requiring ROOT
There are use cases where the tool is used but no ROOT installation is available. We should add an option that disables all features that use ROOT to make the other features work independently (e.g. reading in a text file). For ROOT TTrees, we could fall back to uproot. | 0.0 | db53815f4963bd11cc62f88c9111f45134ccac67 | [
"tests/test_cfilereader.py::TestCFileReader::test_cfile_setter",
"tests/test_cfilereader.py::TestCFileReader::test_check_for_comments",
"tests/test_cfilereader.py::TestCFileReader::test_find_graphs",
"tests/test_cfilereader.py::TestCFileReader::test_read_graph",
"tests/test_notebooks.py::test_scikithep_hist... | [] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2024-03-15 04:27:20+00:00 | mit | 274 | |
HK3-Lab-Team__pytrousse-66 | diff --git a/src/trousse/dataset.py b/src/trousse/dataset.py
index 450f923..ce949a1 100644
--- a/src/trousse/dataset.py
+++ b/src/trousse/dataset.py
@@ -141,7 +141,6 @@ class Dataset:
feature_cols: Tuple = None,
data_file: str = None,
df_object: pd.DataFrame = None,
- nan_percentage_th... | HK3-Lab-Team/pytrousse | 28ae6abc5c1c743050789c0e2be66161e8ee3073 | diff --git a/tests/integration/test_dataset.py b/tests/integration/test_dataset.py
index bfcb88a..6b4111d 100644
--- a/tests/integration/test_dataset.py
+++ b/tests/integration/test_dataset.py
@@ -25,7 +25,7 @@ from ..fixtures import CSV
class Describe_Dataset:
@pytest.mark.parametrize(
- "nan_ratio, n_c... | Dataset method: nan_columns
nan_columns(tolerance) [2c]
Tolerance is a (optional, default=1) float number (0 to 1) representing the ratio “nan samples”/”total samples” for the column to be considered a “nan column”.
| 0.0 | 28ae6abc5c1c743050789c0e2be66161e8ee3073 | [
"tests/integration/test_dataset.py::Describe_Dataset::test_nan_columns[0.8-2-expected_nan_columns0]",
"tests/integration/test_dataset.py::Describe_Dataset::test_nan_columns[0.8-1-expected_nan_columns1]",
"tests/integration/test_dataset.py::Describe_Dataset::test_nan_columns[0.8-0-expected_nan_columns2]",
"tes... | [
"tests/integration/test_dataset.py::Describe_Dataset::test_get_categorical_cols[50-expected_categ_cols0]",
"tests/integration/test_dataset.py::Describe_Dataset::test_get_categorical_cols[100-expected_categ_cols1]",
"tests/integration/test_dataset.py::Describe_Dataset::test_get_categorical_cols[3000-expected_cat... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-09-21 16:04:46+00:00 | mit | 275 | |
HTTP-APIs__hydra-python-core-91 | diff --git a/hydra_python_core/doc_maker.py b/hydra_python_core/doc_maker.py
index 31996c4..aa80d4a 100644
--- a/hydra_python_core/doc_maker.py
+++ b/hydra_python_core/doc_maker.py
@@ -332,6 +332,17 @@ def create_property(supported_property: Dict[str, Any]) -> Union[HydraLink, Hydr
prop_require = supported_propert... | HTTP-APIs/hydra-python-core | f191e9e58a7ab81552814303031aaa3bf90ff514 | diff --git a/tests/test_doc_writer.py b/tests/test_doc_writer.py
index e37e805..d497658 100644
--- a/tests/test_doc_writer.py
+++ b/tests/test_doc_writer.py
@@ -23,6 +23,7 @@ class TestDocWriter(unittest.TestCase):
'supportedOperation': 'hydra:supportedOperation',
'label': 'rdfs:label',
... | Implement copying of data types properties
### I'm submitting a
- [x ] feature request.
If the declaration of a type for a field is present in the original ontology, it should be copied in the ApiDoc to allow `hydrus` to read it and genreate the right column type.
Necessary for https://github.com/HTTP-APIs/hydr... | 0.0 | f191e9e58a7ab81552814303031aaa3bf90ff514 | [
"tests/test_doc_writer.py::TestDocWriter::test_context_with_nothing"
] | [
"tests/test_doc_writer.py::TestDocWriter::test_context_with_class",
"tests/test_doc_writer.py::TestDocWriter::test_context_with_collection"
] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-07-01 13:33:02+00:00 | mit | 276 | |
IAMconsortium__nomenclature-9 | diff --git a/nomenclature/core.py b/nomenclature/core.py
index 93180ed..cb40464 100644
--- a/nomenclature/core.py
+++ b/nomenclature/core.py
@@ -7,10 +7,13 @@ from nomenclature.validation import validate
class Nomenclature:
"""A nomenclature with codelists for all dimensions used in the IAMC data format"""
- ... | IAMconsortium/nomenclature | 979ce2aeb281396110ab2a08ed734cf075fca8b6 | diff --git a/tests/test_core.py b/tests/test_core.py
new file mode 100644
index 0000000..58e5d9c
--- /dev/null
+++ b/tests/test_core.py
@@ -0,0 +1,8 @@
+import pytest
+import nomenclature as nc
+
+
+def test_nonexisting_path_raises():
+ """Check that initializing a Nomenclature with a non-existing path raises"""
+ ... | Relative definition of path in Nomenclature
The relative definition of the `path` variable in the `__init__` of `Nomenclature` `def __init__(self, path="definitions")` can lead to problems when the workflow where it is used is not started from the parent directory of `definitions`.
One possible fix would be to remo... | 0.0 | 979ce2aeb281396110ab2a08ed734cf075fca8b6 | [
"tests/test_core.py::test_nonexisting_path_raises"
] | [] | {
"failed_lite_validators": [
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2021-06-29 09:08:32+00:00 | apache-2.0 | 277 | |
IAMconsortium__pyam-697 | diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md
index 1f98daf..757e2f8 100644
--- a/RELEASE_NOTES.md
+++ b/RELEASE_NOTES.md
@@ -2,6 +2,7 @@
## Individual updates
+- [#697](https://github.com/IAMconsortium/pyam/pull/697) Add warning if IIASA API returns empty result
- [#695](https://github.com/IAMconsortium/pyam/... | IAMconsortium/pyam | 7f00c7951f5aae42238461506572163adb0697e2 | diff --git a/tests/test_iiasa.py b/tests/test_iiasa.py
index 8478e09..727e643 100644
--- a/tests/test_iiasa.py
+++ b/tests/test_iiasa.py
@@ -167,39 +167,71 @@ def test_meta_columns(conn):
npt.assert_array_equal(conn.meta_columns, META_COLS)
+@pytest.mark.parametrize("kwargs", [{}, dict(model="model_a")])
@pyt... | Unexpected failures with incorrect permissions in the IIASA database system
When a user has access to a Scenario Explorer database instance but no permission to view any models (or no scenarios exist), querying data from the API fails with an error similar to
```
if nmissing == len(indexer):
if use_interva... | 0.0 | 7f00c7951f5aae42238461506572163adb0697e2 | [
"tests/test_iiasa.py::test_index[True-kwargs1]",
"tests/test_iiasa.py::test_index[False-kwargs1]",
"tests/test_iiasa.py::test_index_empty",
"tests/test_iiasa.py::test_index_illegal_column",
"tests/test_iiasa.py::test_meta[True-kwargs1]",
"tests/test_iiasa.py::test_meta[False-kwargs1]",
"tests/test_iiasa... | [
"tests/test_iiasa.py::test_unknown_conn",
"tests/test_iiasa.py::test_valid_connections",
"tests/test_iiasa.py::test_anon_conn",
"tests/test_iiasa.py::test_conn_nonexisting_creds_file",
"tests/test_iiasa.py::test_conn_invalid_creds_file[creds0-Credentials",
"tests/test_iiasa.py::test_conn_invalid_creds_fil... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2022-08-31 13:12:38+00:00 | apache-2.0 | 278 | |
ICB-DCM__pyABC-295 | diff --git a/pyabc/acceptor/acceptor.py b/pyabc/acceptor/acceptor.py
index cc8ca36..3c6acac 100644
--- a/pyabc/acceptor/acceptor.py
+++ b/pyabc/acceptor/acceptor.py
@@ -19,7 +19,7 @@ import pandas as pd
from typing import Callable
import logging
-from ..distance import Distance, SCALE_LIN
+from ..distance import Di... | ICB-DCM/pyABC | 45369a69df3fbb982529f5b2188e64783efe613a | diff --git a/test/test_distance_function.py b/test/test_distance_function.py
index e40c2fc..ef95c37 100644
--- a/test/test_distance_function.py
+++ b/test/test_distance_function.py
@@ -1,5 +1,8 @@
import numpy as np
import scipy as sp
+import scipy.stats
+import tempfile
+
from pyabc.distance import (
Percentil... | Log distance weights
Until the near future, the distance weights will not be stored in the history due to legacy reasons. Thus, it may be good to add a callback function which is called after each update method.
Sidenote: Always possible by creating a SubClass, or, to some degree, using the `logging.getLogger("Dista... | 0.0 | 45369a69df3fbb982529f5b2188e64783efe613a | [
"test/test_distance_function.py::test_store_weights"
] | [
"test/test_distance_function.py::test_single_parameter",
"test/test_distance_function.py::test_two_parameters_but_only_one_used",
"test/test_distance_function.py::test_two_parameters_and_two_used",
"test/test_distance_function.py::test_single_parameter_percentile",
"test/test_distance_function.py::test_pnor... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-05-07 22:33:57+00:00 | bsd-3-clause | 279 | |
ICB-DCM__pyABC-367 | diff --git a/.github/workflows/ci_push.yml b/.github/workflows/ci_push.yml
index 52bc7d5..635cb1d 100644
--- a/.github/workflows/ci_push.yml
+++ b/.github/workflows/ci_push.yml
@@ -8,7 +8,7 @@ jobs:
runs-on: ubuntu-latest
strategy:
matrix:
- python-version: [3.8]
+ python-version: [3.8, 3... | ICB-DCM/pyABC | 70e669604c57e4f0a9d4bfad441aefcae4c3266a | diff --git a/test/base/test_transition.py b/test/base/test_transition.py
index 2aad858..c0632c7 100644
--- a/test/base/test_transition.py
+++ b/test/base/test_transition.py
@@ -265,16 +265,16 @@ def test_discrete_jump_transition():
def freq(weight):
return p_stay * weight + p_move * (1 - weight)
- as... | Cloudpickle >=1.5.0 breaks on python<=3.7
TBD what changed in 1.5.0 https://github.com/cloudpipe/cloudpickle
Also, add a base test on legacy python versions as these are still quite popular. | 0.0 | 70e669604c57e4f0a9d4bfad441aefcae4c3266a | [
"test/base/test_transition.py::test_rvs_return_type[LocalTransition]",
"test/base/test_transition.py::test_rvs_return_type[MultivariateNormalTransition]",
"test/base/test_transition.py::test_rvs_return_type[SimpleAggregatedTransition]",
"test/base/test_transition.py::test_rvs_return_type[SimpleAggregatedTrans... | [] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_hyperlinks",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-11-27 21:44:03+00:00 | bsd-3-clause | 280 | |
ICB-DCM__pyPESTO-658 | diff --git a/pypesto/problem.py b/pypesto/problem.py
index d43693f..445a0bc 100644
--- a/pypesto/problem.py
+++ b/pypesto/problem.py
@@ -200,10 +200,11 @@ class Problem:
raise AssertionError(f"{attr} dimension invalid.")
if self.x_guesses_full.shape[1] != self.dim_full:
- x_guesse... | ICB-DCM/pyPESTO | 69e834d8df4863becac9d92edfc6d70bf45df28b | diff --git a/test/profile/test_validation_intervals.py b/test/profile/test_validation_intervals.py
new file mode 100644
index 0000000..623153c
--- /dev/null
+++ b/test/profile/test_validation_intervals.py
@@ -0,0 +1,64 @@
+"""
+This is for testing profile based validation intervals.
+"""
+
+import numpy as np
+import u... | Prediction profiles
At some point in the more or less near future, we will want to have prediction profiles in pyPESTO. Pretty much of the parameter profiling code could be reused, I think/hope... | 0.0 | 69e834d8df4863becac9d92edfc6d70bf45df28b | [
"test/profile/test_validation_intervals.py::ValidationIntervalTest::test_validation_intervals"
] | [] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_added_files",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2021-05-07 12:28:41+00:00 | bsd-3-clause | 281 | |
ICB-DCM__pyPESTO-676 | diff --git a/pypesto/profile/validation_intervals.py b/pypesto/profile/validation_intervals.py
index 15de409..c60a437 100644
--- a/pypesto/profile/validation_intervals.py
+++ b/pypesto/profile/validation_intervals.py
@@ -125,13 +125,13 @@ def validation_profile_significance(
# => survival function chi.sf
if r... | ICB-DCM/pyPESTO | 5cce409f5c053ed257329f74c31f050bfcfe938c | diff --git a/test/profile/test_validation_intervals.py b/test/profile/test_validation_intervals.py
index 623153c..a129b19 100644
--- a/test/profile/test_validation_intervals.py
+++ b/test/profile/test_validation_intervals.py
@@ -16,18 +16,18 @@ class ValidationIntervalTest(unittest.TestCase):
@classmethod
def... | Add more tests to validation intervals
**Feature description**
It would be nice to check, if the prediction for `x_opt` leads to the significance `1` and if the significance approaches zero for larger and larger deviations. (I had some problems with that for one application of mine, but I would not exclude that the i... | 0.0 | 5cce409f5c053ed257329f74c31f050bfcfe938c | [
"test/profile/test_validation_intervals.py::ValidationIntervalTest::test_validation_intervals"
] | [] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2021-05-25 13:56:38+00:00 | bsd-3-clause | 282 | |
INCATools__ontology-access-kit-183 | diff --git a/src/__init__.py b/src/__init__.py
deleted file mode 100644
index e69de29b..00000000
diff --git a/src/oaklib/cli.py b/src/oaklib/cli.py
index 1f3b0fc5..f92e7dd5 100644
--- a/src/oaklib/cli.py
+++ b/src/oaklib/cli.py
@@ -2354,10 +2354,25 @@ def apply_obsolete(output, output_type, terms):
show_default=Tr... | INCATools/ontology-access-kit | 98812ee4d1046f10938704b303d870a3ecf77b75 | diff --git a/tests/test_utilities/test_cross_ontology_diff.py b/tests/test_utilities/test_cross_ontology_diff.py
index 33a3e800..09ace3de 100644
--- a/tests/test_utilities/test_cross_ontology_diff.py
+++ b/tests/test_utilities/test_cross_ontology_diff.py
@@ -4,6 +4,7 @@ import yaml
from linkml_runtime.dumpers import y... | --verbose option no longer working
Previously `-v` logged at INFO level, `-vv` at debug, but now this has stopped working | 0.0 | 98812ee4d1046f10938704b303d870a3ecf77b75 | [
"tests/test_utilities/test_cross_ontology_diff.py::TestStructuralDiff::test_restrict_to_sources",
"tests/test_utilities/test_cross_ontology_diff.py::TestStructuralDiff::test_structural_diff_with_preds"
] | [
"tests/test_utilities/test_cross_ontology_diff.py::TestStructuralDiff::test_structural_diff"
] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_added_files",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2022-07-12 02:45:06+00:00 | apache-2.0 | 283 | |
INM-6__python-odmltables-120 | diff --git a/odmltables/odml_table.py b/odmltables/odml_table.py
index 7ac58aa..f6bf460 100644
--- a/odmltables/odml_table.py
+++ b/odmltables/odml_table.py
@@ -399,6 +399,8 @@ class OdmlTable(object):
# create a inverted header_titles dictionary for an inverted lookup
inv_header_titles = {v: k for (k... | INM-6/python-odmltables | f9787990e4865f222fb072e8c5c84f96a2bada6c | diff --git a/odmltables/tests/test_odml_csv_table.py b/odmltables/tests/test_odml_csv_table.py
index aee45c0..9d07022 100644
--- a/odmltables/tests/test_odml_csv_table.py
+++ b/odmltables/tests/test_odml_csv_table.py
@@ -76,6 +76,22 @@ class TestOdmlCsvTable(unittest.TestCase):
self.assertEqual(len(table._odml... | Error when converting empty (apart from header) csv file
'row_id' is undefined here when the csv file only contains a header:
https://github.com/INM-6/python-odmltables/blob/f9787990e4865f222fb072e8c5c84f96a2bada6c/odmltables/odml_table.py#L492 | 0.0 | f9787990e4865f222fb072e8c5c84f96a2bada6c | [
"odmltables/tests/test_odml_csv_table.py::TestOdmlCsvTable::test_saveload_empty_header"
] | [
"odmltables/tests/test_odml_xls_table.py::TestShowallOdmlXlsTable::test_tf",
"odmltables/tests/test_odml_xls_table.py::TestShowallOdmlXlsTable::test_ft",
"odmltables/tests/test_odml_xls_table.py::TestShowallOdmlXlsTable::test_tt",
"odmltables/tests/test_odml_xls_table.py::TestShowallOdmlXlsTable::test_ff",
... | {
"failed_lite_validators": [
"has_short_problem_statement"
],
"has_test_patch": true,
"is_lite": false
} | 2020-12-11 08:57:12+00:00 | bsd-3-clause | 284 | |
ImagingDataCommons__highdicom-211 | diff --git a/src/highdicom/content.py b/src/highdicom/content.py
index 844cdee..ddbed2a 100644
--- a/src/highdicom/content.py
+++ b/src/highdicom/content.py
@@ -1867,7 +1867,7 @@ class VOILUTTransformation(Dataset):
)
for exp in window_explanation:
_check_long_... | ImagingDataCommons/highdicom | eea1f075a5bf5159e80b4cd16a9a19aa295b2719 | diff --git a/tests/test_pr.py b/tests/test_pr.py
index 8139f1b..b77007d 100644
--- a/tests/test_pr.py
+++ b/tests/test_pr.py
@@ -1348,6 +1348,73 @@ class TestXSoftcopyPresentationState(unittest.TestCase):
assert gsps.SoftcopyVOILUTSequence[1].WindowWidth == expected_width
assert gsps.SoftcopyVOILUTSeq... | Failure to create GSPS when reference DICOM uses "MultiValue" for WindowCenter, WindowWidth
When I go to create a GSPS using hd.pr.GrayscaleSoftcopyPresentationState() I get an error for certain DICOM where WindowWidth and WindowCenter are not floats in the reference DICOM.
Here's the error I get:
```
~/anaconda3... | 0.0 | eea1f075a5bf5159e80b4cd16a9a19aa295b2719 | [
"tests/test_pr.py::TestXSoftcopyPresentationState::test_construction_with_copy_voi_lut_multival",
"tests/test_pr.py::TestXSoftcopyPresentationState::test_construction_with_copy_voi_lut_multival_with_expl"
] | [
"tests/test_pr.py::TestSoftcopyVOILUTTransformation::test_construction_basic",
"tests/test_pr.py::TestSoftcopyVOILUTTransformation::test_construction_both",
"tests/test_pr.py::TestSoftcopyVOILUTTransformation::test_construction_explanation",
"tests/test_pr.py::TestSoftcopyVOILUTTransformation::test_constructi... | {
"failed_lite_validators": [
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2022-12-28 18:49:28+00:00 | mit | 285 | |
ImagingDataCommons__highdicom-226 | diff --git a/src/highdicom/sr/coding.py b/src/highdicom/sr/coding.py
index d4305b6..3301e86 100644
--- a/src/highdicom/sr/coding.py
+++ b/src/highdicom/sr/coding.py
@@ -126,7 +126,14 @@ class CodedConcept(Dataset):
raise TypeError(
'Dataset must be a pydicom.dataset.Dataset.'
... | ImagingDataCommons/highdicom | 5cb05291d59378919de3c53f9c315f38c51121ce | diff --git a/tests/test_sr.py b/tests/test_sr.py
index e1ccb7c..d4b94aa 100644
--- a/tests/test_sr.py
+++ b/tests/test_sr.py
@@ -444,6 +444,12 @@ class TestCodedConcept(unittest.TestCase):
def setUp(self):
super().setUp()
self._value = '373098007'
+ self._long_code_value = 'some_code_value... | Coded Concept with Long Code Value
The CodedConcept `__init()` assigns the value to a LongCodeValue tag if it is >16 characters, and the `value()` method also supports retrieving the value from either CodeValue, LongCodeValue, or URNCodeValue. But the `from_dataset()` classmethod raises an attribute error if the passe... | 0.0 | 5cb05291d59378919de3c53f9c315f38c51121ce | [
"tests/test_sr.py::TestCodedConcept::test_from_dataset_long_value",
"tests/test_sr.py::TestCodedConcept::test_from_dataset_multiple_value",
"tests/test_sr.py::TestCodedConcept::test_from_dataset_urn_value"
] | [
"tests/test_sr.py::TestImageRegion::test_construction_ct_image",
"tests/test_sr.py::TestImageRegion::test_construction_sm_image_with_pixel_origin_interpretation",
"tests/test_sr.py::TestImageRegion::test_construction_sm_image_with_wrong_pixel_origin_interpretation",
"tests/test_sr.py::TestImageRegion::test_co... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2023-04-24 21:16:46+00:00 | mit | 286 | |
ImperialCollegeLondon__django-drf-filepond-54 | diff --git a/django_drf_filepond/apps.py b/django_drf_filepond/apps.py
index 4309bc3..c5904ca 100644
--- a/django_drf_filepond/apps.py
+++ b/django_drf_filepond/apps.py
@@ -14,9 +14,20 @@ class DjangoDrfFilepondConfig(AppConfig):
verbose_name = 'FilePond Server-side API'
def ready(self):
+ # Get BASE... | ImperialCollegeLondon/django-drf-filepond | 5cb99531523609c77762288ac09552651e431688 | diff --git a/tests/settings.py b/tests/settings.py
index 5c29306..892b914 100644
--- a/tests/settings.py
+++ b/tests/settings.py
@@ -14,6 +14,12 @@ import os
# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
+# For testing ... | Problem with Pathlib based paths
Hello and thanks a lot for this awesome app. it makes lives so much easier!
I recently started a new django project (Django 3.1) and as you know, django has moved from **os.path** to **Pathlib**. unfortunately, this breaks this app's functionality.
It throws an error in :
django_drf_... | 0.0 | 5cb99531523609c77762288ac09552651e431688 | [
"tests/test_utils.py::UtilsTestCase::test_get_file_id",
"tests/test_utils.py::UtilsTestCase::test_get_base_dir_with_path",
"tests/test_utils.py::UtilsTestCase::test_get_base_dir_with_str",
"tests/test_utils.py::UtilsTestCase::test_get_user_anonymous",
"tests/test_utils.py::UtilsTestCase::test_get_user_regul... | [] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-06-23 18:38:27+00:00 | bsd-3-clause | 287 | |
Infinidat__munch-52 | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 424148a..8823bcc 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,8 @@ Changelog
Next Version
------------
+* Support ``fromYAML`` classmethod for all Munch subclasses (PR [#52](https://github.com/Infinidat/munch/pull/52) fixes [#34](https://github.com/Infinidat... | Infinidat/munch | dede29c5e8bde7ca575365d50dd44f8fc12a5991 | diff --git a/tests/test_yaml.py b/tests/test_yaml.py
index 92054a8..6d15261 100644
--- a/tests/test_yaml.py
+++ b/tests/test_yaml.py
@@ -1,5 +1,5 @@
import pytest
-from munch import Munch
+from munch import Munch, DefaultMunch
def test_from_yaml(yaml):
@@ -39,7 +39,22 @@ def test_toYAML(yaml):
@pytest.mark.use... | DefaultMunch.fromYAML should take default argument
Currently, `DefaultMunch.fromYAML` is the same as `Munch.fromYAML`. This is confusing, and it is a pitty because a real `DefaultMunch.fromYAML` would add functionality which, FWIW, I could use. Thus, I propose to create a dedicated `DefaultMunch.fromYAML` function wit... | 0.0 | dede29c5e8bde7ca575365d50dd44f8fc12a5991 | [
"tests/test_yaml.py::test_fromYAML_default_munch"
] | [
"tests/test_yaml.py::test_to_yaml",
"tests/test_yaml.py::test_fromYAML",
"tests/test_yaml.py::test_to_yaml_safe",
"tests/test_yaml.py::test_from_yaml",
"tests/test_yaml.py::test_toYAML"
] | {
"failed_lite_validators": [
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2019-10-29 15:16:08+00:00 | mit | 288 | |
Infinidat__munch-54 | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 424148a..3f5a26d 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,9 @@ Changelog
Next Version
------------
+* Fix return value of DefaultMunch and DefaultFactoryMunch's get method (fixes [#53](https://github.com/Infinidat/munch/issues/53))
+
+* Support ``fromYAM... | Infinidat/munch | dede29c5e8bde7ca575365d50dd44f8fc12a5991 | diff --git a/tests/conftest.py b/tests/conftest.py
index 259071a..45d6b23 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -1,4 +1,5 @@
import pytest
+import munch
@pytest.fixture(name='yaml')
@@ -9,3 +10,12 @@ def yaml_module():
except ImportError:
pass
pytest.skip("Module 'PyYAML' is... | DefaultMunch getter now returns None instead of DefaultValue
If a DefaultMunch has a default value of None, munch.get(attr_name, default_value) will now return None instead of default_value
```
>>> from munch import DefaultMunch
>>> d = DefaultMunch(None, {'a': 1})
>>> d.get('a')
1
>>> d.get('b')
>>> d.get('b'... | 0.0 | dede29c5e8bde7ca575365d50dd44f8fc12a5991 | [
"tests/test_munch.py::test_get_default_value[DefaultFactoryMunch]",
"tests/test_munch.py::test_get_default_value[DefaultMunch]",
"tests/test_yaml.py::test_fromYAML_default_munch"
] | [
"tests/test_munch.py::test_repr_default",
"tests/test_munch.py::test_getattr_default_factory",
"tests/test_munch.py::test_reserved_attributes[__getitem__]",
"tests/test_munch.py::test_reserved_attributes[__iter__]",
"tests/test_munch.py::test_reserved_attributes[__contains__]",
"tests/test_munch.py::test_... | {
"failed_lite_validators": [
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2019-10-29 17:36:12+00:00 | mit | 289 | |
Infinidat__munch-93 | diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 3880744..64954bd 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -40,11 +40,15 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- - uses: actions/setup-python@v4
- # Install the testing ... | Infinidat/munch | 28c1256e76c00f42aa9315015283f0bba8819c4c | diff --git a/tests/test_munch.py b/tests/test_munch.py
index 9114e3d..c80b757 100644
--- a/tests/test_munch.py
+++ b/tests/test_munch.py
@@ -557,3 +557,17 @@ def test_get_default_value(munch_obj):
munch_cls = type(munch_obj)
kwargs = {} if munch_cls != DefaultFactoryMunch else {"default_factory": munch_obj.de... | munchify broken?
Here is a minimal working example, which is broken. Is this already fixed?
`munchify((1,2,[{'A': 'B'}]))
Result: (1, 2, [Munch({'A': 'B'}), Munch({'A': 'B'})])
Expected: (1, 2, [Munch({'A': 'B'})])` | 0.0 | 28c1256e76c00f42aa9315015283f0bba8819c4c | [
"tests/test_munch.py::test_munchify_tuple_list",
"tests/test_munch.py::test_munchify_tuple_list_more_elements"
] | [
"tests/test_munch.py::test_copy",
"tests/test_munch.py::test_reserved_attributes[__getattribute__]",
"tests/test_munch.py::test_dict_property",
"tests/test_munch.py::test_get_default_value[Munch]",
"tests/test_munch.py::test_reserved_attributes[fromYAML]",
"tests/test_munch.py::test_pickling_unpickling_ne... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2023-01-17 07:12:19+00:00 | mit | 290 | |
Informasjonsforvaltning__datacatalogtordf-69 | diff --git a/src/datacatalogtordf/dataset.py b/src/datacatalogtordf/dataset.py
index 419f9be..92eb7bb 100644
--- a/src/datacatalogtordf/dataset.py
+++ b/src/datacatalogtordf/dataset.py
@@ -54,7 +54,8 @@ class Dataset(Resource):
spatial_resolution (Decimal): Minimum spatial separation resolvable \
... | Informasjonsforvaltning/datacatalogtordf | 20d2ddbf36c19a2bd6621dec3ecf64e50d021866 | diff --git a/tests/test_dataset.py b/tests/test_dataset.py
index 0a8c0c9..c7467cf 100644
--- a/tests/test_dataset.py
+++ b/tests/test_dataset.py
@@ -311,7 +311,7 @@ def test_to_graph_should_return_temporal_resolution() -> None:
"""It returns a temporal resolution graph isomorphic to spec."""
dataset = Dataset... | temporal_resolution property should be a list | 0.0 | 20d2ddbf36c19a2bd6621dec3ecf64e50d021866 | [
"tests/test_dataset.py::test_to_graph_should_return_temporal_resolution",
"tests/test_distribution.py::test_to_graph_should_return_temporal_resolution"
] | [
"tests/test_dataset.py::test_to_graph_should_return_identifier_set_at_constructor",
"tests/test_dataset.py::test_to_graph_should_return_skolemization",
"tests/test_dataset.py::test_to_graph_should_return_distribution_as_graph",
"tests/test_dataset.py::test_to_graph_should_return_distribution_skolemized",
"t... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2022-05-23 09:01:29+00:00 | apache-2.0 | 291 | |
Instagram__LibCST-356 | diff --git a/libcst/matchers/_matcher_base.py b/libcst/matchers/_matcher_base.py
index 27475d5..0cf281c 100644
--- a/libcst/matchers/_matcher_base.py
+++ b/libcst/matchers/_matcher_base.py
@@ -932,6 +932,24 @@ def SaveMatchedNode(matcher: _OtherNodeT, name: str) -> _OtherNodeT:
return cast(_OtherNodeT, _ExtractMat... | Instagram/LibCST | 3ada79ebcb14224e0c0cd4e40a622540656cc0e3 | diff --git a/libcst/matchers/tests/test_extract.py b/libcst/matchers/tests/test_extract.py
index 5c3cf12..77c134a 100644
--- a/libcst/matchers/tests/test_extract.py
+++ b/libcst/matchers/tests/test_extract.py
@@ -322,6 +322,34 @@ class MatchersExtractTest(UnitTest):
)
self.assertEqual(nodes, {})
+ ... | [BUG] SavedMatchedNode affects matching
Wrapping a matcher with `SaveMatchedNode` sometimes breaks the matching.
`libcst` version: 0.3.7 (installed with pip)
See the test below
```py
import libcst.matchers as m
import libcst
node = libcst.parse_expression("[1, 2, 3]")
matcher = m.List(
elements=[
... | 0.0 | 3ada79ebcb14224e0c0cd4e40a622540656cc0e3 | [
"libcst/matchers/tests/test_extract.py::MatchersExtractTest::test_extract_optional_wildcard_tail"
] | [
"libcst/matchers/tests/test_extract.py::MatchersExtractTest::test_extract_precedence_sequence_wildcard",
"libcst/matchers/tests/test_extract.py::MatchersExtractTest::test_extract_sequence",
"libcst/matchers/tests/test_extract.py::MatchersExtractTest::test_extract_sentinel",
"libcst/matchers/tests/test_extract... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2020-08-02 14:27:42+00:00 | mit | 292 | |
Instagram__LibCST-417 | diff --git a/libcst/_parser/conversions/expression.py b/libcst/_parser/conversions/expression.py
index 8edbf26..e66f836 100644
--- a/libcst/_parser/conversions/expression.py
+++ b/libcst/_parser/conversions/expression.py
@@ -1441,8 +1441,16 @@ def convert_arg_assign_comp_for(
elt, for_in = children
re... | Instagram/LibCST | 7478d738ea4911b51fe8c0758a6a405f7ce9c98a | diff --git a/libcst/_nodes/tests/test_namedexpr.py b/libcst/_nodes/tests/test_namedexpr.py
index 4ba1485..3949bbe 100644
--- a/libcst/_nodes/tests/test_namedexpr.py
+++ b/libcst/_nodes/tests/test_namedexpr.py
@@ -101,6 +101,71 @@ class NamedExprTest(CSTNodeTest):
"parser": _parse_statement_force_38,
... | Function call with walrus loses colon in roundtrip
This input
```
f(x:=1)
```
is roundtripped as
```
f(x=1)
```
due to a parse error.
I'm fairly certain the problem is the grammar on https://github.com/Instagram/LibCST/blob/master/libcst/_parser/conversions/expression.py#L1430 not matching namedexpr_... | 0.0 | 7478d738ea4911b51fe8c0758a6a405f7ce9c98a | [
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_8",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_6",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_7"
] | [
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_invalid_1",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_1",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_4",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_invalid_0",
"libcst/_nodes/tests/tes... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2020-11-11 22:25:05+00:00 | mit | 293 | |
Instagram__LibCST-419 | diff --git a/libcst/_parser/conversions/expression.py b/libcst/_parser/conversions/expression.py
index 8edbf26..b7e5c18 100644
--- a/libcst/_parser/conversions/expression.py
+++ b/libcst/_parser/conversions/expression.py
@@ -1038,12 +1038,12 @@ def convert_fstring_equality(
@with_production(
"fstring_expr",
- ... | Instagram/LibCST | 7478d738ea4911b51fe8c0758a6a405f7ce9c98a | diff --git a/libcst/_nodes/tests/test_atom.py b/libcst/_nodes/tests/test_atom.py
index 452c9f7..1a14e37 100644
--- a/libcst/_nodes/tests/test_atom.py
+++ b/libcst/_nodes/tests/test_atom.py
@@ -668,6 +668,35 @@ class AtomTest(CSTNodeTest):
"parser": parse_expression,
"expected_position"... | parse error for comprehensions in f-strings
```
❯ cat test.py
x = [1, 2]
print(f"List of: {y for y in x}")
❯ python3 test.py ... | 0.0 | 7478d738ea4911b51fe8c0758a6a405f7ce9c98a | [
"libcst/_nodes/tests/test_atom.py::AtomTest::test_valid_68",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_7",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_8",
"libcst/_nodes/tests/test_namedexpr.py::NamedExprTest::test_valid_6"
] | [
"libcst/_nodes/tests/test_atom.py::AtomTest::test_invalid_7",
"libcst/_nodes/tests/test_atom.py::AtomTest::test_valid_57",
"libcst/_nodes/tests/test_atom.py::AtomTest::test_invalid_23",
"libcst/_nodes/tests/test_atom.py::AtomTest::test_invalid_18",
"libcst/_nodes/tests/test_atom.py::AtomTest::test_invalid_8... | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2020-11-13 03:15:50+00:00 | mit | 294 | |
Instagram__LibCST-429 | diff --git a/libcst/matchers/_visitors.py b/libcst/matchers/_visitors.py
index 301e675..be50edf 100644
--- a/libcst/matchers/_visitors.py
+++ b/libcst/matchers/_visitors.py
@@ -79,8 +79,18 @@ def _get_possible_match_classes(matcher: BaseMatcherNode) -> List[Type[cst.CSTNo
return [getattr(cst, matcher.__class__... | Instagram/LibCST | 2f117f0bc3f718b9cc203dfbd6c9f0530ec043c1 | diff --git a/libcst/matchers/tests/test_decorators.py b/libcst/matchers/tests/test_decorators.py
index c102f2a..b1ff3d0 100644
--- a/libcst/matchers/tests/test_decorators.py
+++ b/libcst/matchers/tests/test_decorators.py
@@ -6,6 +6,7 @@
from ast import literal_eval
from textwrap import dedent
from typing import List... | make @m.leave() recognize function return using new Union syntax |
`@m.leave` throws an exception when function return use new union syntax:
```
@m.call_if_inside(m.ImportFrom(module=m.Name(value="typing")))
@m.leave(m.ImportFrom(module=m.Name(value="typing")))
def test(
self, original_node:... | 0.0 | 2f117f0bc3f718b9cc203dfbd6c9f0530ec043c1 | [
"libcst/matchers/tests/test_decorators.py::MatchersUnionDecoratorsTest::test_init_with_new_union_annotation",
"libcst/metadata/tests/test_scope_provider.py::ScopeProviderTest::test_for_scope_ordering",
"libcst/metadata/tests/test_scope_provider.py::ScopeProviderTest::test_no_out_of_order_references_in_global_sc... | [
"libcst/matchers/tests/test_decorators.py::MatchersGatingDecoratorsTest::test_call_if_inside_collect_simple",
"libcst/matchers/tests/test_decorators.py::MatchersGatingDecoratorsTest::test_call_if_inside_transform_simple",
"libcst/matchers/tests/test_decorators.py::MatchersGatingDecoratorsTest::test_call_if_insi... | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false
} | 2020-12-08 17:56:12+00:00 | mit | 295 | |
Instagram__LibCST-626 | diff --git a/libcst/_nodes/statement.py b/libcst/_nodes/statement.py
index ded7c7c..e4b8d28 100644
--- a/libcst/_nodes/statement.py
+++ b/libcst/_nodes/statement.py
@@ -2687,11 +2687,6 @@ class Match(BaseCompoundStatement):
if len(self.cases) == 0:
raise CSTValidationError("A match statement must ... | Instagram/LibCST | 2345848d4a0f92af27f292befaccb11f87b7caa1 | diff --git a/libcst/_nodes/tests/test_match.py b/libcst/_nodes/tests/test_match.py
index edf51d8..a203ffe 100644
--- a/libcst/_nodes/tests/test_match.py
+++ b/libcst/_nodes/tests/test_match.py
@@ -39,6 +39,39 @@ class MatchTest(CSTNodeTest):
+ ' case "foo": pass\n',
"parser": parser... | CST node validation is broken for parenthesized MatchAs objects
Simple reproducer:
```py
match x:
case (1) as z:
pass
```
```
thread '<unnamed>' panicked at 'conversion failed for MatchValue: PyErr { type: <class 'libcst._nodes.base.CSTValidationError'>, value: CSTValidationError('Cannot have left ... | 0.0 | 2345848d4a0f92af27f292befaccb11f87b7caa1 | [
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_0",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_1",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_2",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_3",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_4"... | [] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2022-01-23 15:59:56+00:00 | mit | 296 | |
Instagram__LibCST-628 | diff --git a/libcst/_nodes/statement.py b/libcst/_nodes/statement.py
index ded7c7c..0e1cefe 100644
--- a/libcst/_nodes/statement.py
+++ b/libcst/_nodes/statement.py
@@ -2687,11 +2687,6 @@ class Match(BaseCompoundStatement):
if len(self.cases) == 0:
raise CSTValidationError("A match statement must ... | Instagram/LibCST | 2345848d4a0f92af27f292befaccb11f87b7caa1 | diff --git a/libcst/_nodes/tests/test_match.py b/libcst/_nodes/tests/test_match.py
index edf51d8..5ceea72 100644
--- a/libcst/_nodes/tests/test_match.py
+++ b/libcst/_nodes/tests/test_match.py
@@ -425,6 +425,34 @@ class MatchTest(CSTNodeTest):
+ " case None | False | True: pass\n",
... | CST node validation error for match without whitespace
Short reproducer:
```
match(x):
case(y):
pass
```
Crash:
```
thread '<unnamed>' panicked at 'conversion failed for Match: PyErr { type: <class 'libcst._nodes.base.CSTValidationError'>, value: CSTValidationError("Must have at least one space af... | 0.0 | 2345848d4a0f92af27f292befaccb11f87b7caa1 | [
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_0",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_1",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_2",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_3",
"libcst/_nodes/tests/test_match.py::MatchTest::test_valid_4"... | [] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2022-01-23 19:55:45+00:00 | mit | 297 | |
J-CPelletier__webcomix-7 | diff --git a/webcomix/main.py b/webcomix/main.py
index 0053bbb..cba546d 100644
--- a/webcomix/main.py
+++ b/webcomix/main.py
@@ -56,7 +56,12 @@ def download(name, cbz):
default=False,
is_flag=True,
help="Outputs the comic as a cbz file")
-def search(name, start_url, cbz):
+@click.option(
+ "-y",
+ ... | J-CPelletier/webcomix | 25d394314ce26816302e9c878f5cebfb853c16fb | diff --git a/webcomix/tests/test_main.py b/webcomix/tests/test_main.py
index ec2c718..c2dcf42 100644
--- a/webcomix/tests/test_main.py
+++ b/webcomix/tests/test_main.py
@@ -100,7 +100,7 @@ def test_custom(monkeypatch):
assert result.exit_code == 0
assert result.output.strip() == "\n".join([
"Verified... | Custom: Add a -y (yes) option
Looking to use this as a replacement for Dosage, as this allows for custom comics. I'd like to run this daily (or every few days) on a number of comics to pull latest comic. The prompting on Custom Comics (are you sure) is a stumbling block to script it. Can you maybe add a -y to custom, f... | 0.0 | 25d394314ce26816302e9c878f5cebfb853c16fb | [
"webcomix/tests/test_main.py::test_custom",
"webcomix/tests/test_main.py::test_custom_make_cbz",
"webcomix/tests/test_main.py::test_search"
] | [
"webcomix/tests/test_main.py::test_print_verification",
"webcomix/tests/test_main.py::test_comics",
"webcomix/tests/test_main.py::test_good_download",
"webcomix/tests/test_main.py::test_bad_download",
"webcomix/tests/test_main.py::test_good_download_makecbz",
"webcomix/tests/test_main.py::test_bad_downloa... | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2018-07-27 20:03:35+00:00 | mit | 298 | |
J535D165__pyalex-13 | diff --git a/pyalex/api.py b/pyalex/api.py
index 034bafe..c2e95b4 100644
--- a/pyalex/api.py
+++ b/pyalex/api.py
@@ -21,21 +21,55 @@ class AlexConfig(dict):
config = AlexConfig(email=None, api_key=None, openalex_url="https://api.openalex.org")
-def _flatten_kv(k, v):
+def _flatten_kv(d, prefix=""):
- if isins... | J535D165/pyalex | c16060b29717b364be52bf4c2f935926c6b3b4f9 | diff --git a/tests/test_pyalex.py b/tests/test_pyalex.py
index 54a01ef..2ba60a8 100644
--- a/tests/test_pyalex.py
+++ b/tests/test_pyalex.py
@@ -348,3 +348,35 @@ def test_ngrams_with_metadata():
def test_random_publishers():
assert isinstance(Publishers().random(), dict)
+
+
+def test_and_operator():
+
+ # h... | Add example for boolean operators to documentation
Thanks for providing pyalex! It would be helpful to have an example for the use of different boolean filters in the Readme.
Example URL: https://api.openalex.org/works?filter=institutions.country_code:tw,institutions.country_code:hk | 0.0 | c16060b29717b364be52bf4c2f935926c6b3b4f9 | [
"tests/test_pyalex.py::test_and_operator"
] | [
"tests/test_pyalex.py::test_config",
"tests/test_pyalex.py::test_meta_entities",
"tests/test_pyalex.py::test_works_params",
"tests/test_pyalex.py::test_works",
"tests/test_pyalex.py::test_per_page",
"tests/test_pyalex.py::test_W4238809453_works",
"tests/test_pyalex.py::test_W4238809453_works_abstract",
... | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_hyperlinks",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2023-03-27 11:45:10+00:00 | mit | 299 | |
Jc2k__aiohomekit-233 | diff --git a/aiohomekit/zeroconf.py b/aiohomekit/zeroconf.py
index 51b6b48..030b99c 100644
--- a/aiohomekit/zeroconf.py
+++ b/aiohomekit/zeroconf.py
@@ -25,7 +25,7 @@ from ipaddress import ip_address
import logging
import async_timeout
-from zeroconf import ServiceListener, ServiceStateChange, Zeroconf
+from zeroco... | Jc2k/aiohomekit | 0b846304e45bb9b8b6118abedddadac4e8d938ff | diff --git a/tests/conftest.py b/tests/conftest.py
index 7472d30..2fbb52f 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -10,7 +10,7 @@ from unittest import mock
from unittest.mock import AsyncMock, MagicMock, patch
import pytest
-from zeroconf import SignalRegistrationInterface
+from zeroconf import DNS... | Invalid HomeKit Zeroconf record
Getting the following in home assistant logs...
022-11-02 17:33:30.752 DEBUG (MainThread) [aiohomekit.protocol.tlv] sending [
1 (Identifier): (2 bytes/<class 'bytes'>) b'\x01\x00'
2 (Salt): (1 bytes/<class 'bytes'>) b'\x01'
]
2022-11-02 17:33:33.767 DEBUG (MainThread) [aiohomekit.... | 0.0 | 0b846304e45bb9b8b6118abedddadac4e8d938ff | [
"tests/test_controller_ip_controller.py::test_discover_find_one",
"tests/test_controller_ip_controller.py::test_discover_find_one_unpaired",
"tests/test_controller_ip_controller.py::test_find_device_id_case_lower",
"tests/test_controller_ip_controller.py::test_find_device_id_case_upper",
"tests/test_control... | [
"tests/test_controller_ip_controller.py::test_discover_find_none",
"tests/test_controller_ip_controller.py::test_discover_none"
] | {
"failed_lite_validators": [],
"has_test_patch": true,
"is_lite": true
} | 2022-11-03 00:42:54+00:00 | apache-2.0 | 300 | |
JelleZijlstra__ast_decompiler-34 | diff --git a/CHANGELOG b/CHANGELOG
index 62b8063..3d37564 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,4 +1,5 @@
unreleased
+- Preserve literal newlines in docstrings
- Fix decompilation of complex infinity
- Add support for Python 3.10 pattern matching
- Fix incorrect decompilation of lambdas in comprehension guar... | JelleZijlstra/ast_decompiler | f347ea7ddf9162d5b0e89edec73b4af0fa5fc9f7 | diff --git a/tests/test_basic.py b/tests/test_basic.py
index 5b39dbc..72a8ecb 100644
--- a/tests/test_basic.py
+++ b/tests/test_basic.py
@@ -1,6 +1,6 @@
import ast
from ast_decompiler import decompile
-from .tests import check, only_on_version
+from .tests import assert_decompiles, check, only_on_version
def tes... | Docstrings are not preserved correctly.
Currently it's impossible to correctly preserve docstrings. This test shows the issue:
```
from .tests import assert_decompiles
def test_docstrings():
assert_decompiles('''
def a():
"""
Docstring.
"""
return 1
''', '''def a():
"""
Docstring.
... | 0.0 | f347ea7ddf9162d5b0e89edec73b4af0fa5fc9f7 | [
"tests/test_basic.py::test_Str"
] | [
"tests/test_basic.py::test_non_module",
"tests/test_basic.py::test_FunctionDef",
"tests/test_basic.py::test_ClassDef",
"tests/test_basic.py::test_Return",
"tests/test_basic.py::test_Delete",
"tests/test_basic.py::test_Assign",
"tests/test_basic.py::test_AugAssign",
"tests/test_basic.py::test_Print",
... | {
"failed_lite_validators": [
"has_many_modified_files"
],
"has_test_patch": true,
"is_lite": false
} | 2022-05-11 03:53:35+00:00 | apache-2.0 | 301 | |
JeschkeLab__DeerLab-88 | diff --git a/deerlab/fitsignal.py b/deerlab/fitsignal.py
index f1e66978..61466142 100644
--- a/deerlab/fitsignal.py
+++ b/deerlab/fitsignal.py
@@ -16,7 +16,7 @@ from deerlab.utils import isempty, goodness_of_fit, Jacobian
def fitsignal(Vexp, t, r, dd_model='P', bg_model=bg_hom3d, ex_model=ex_4pdeer,
dd... | JeschkeLab/DeerLab | 182ef2fef45d98c19cf436b2388f0d96b135922e | diff --git a/test/test_fitsignal.py b/test/test_fitsignal.py
index 2d66362b..a5101f1a 100644
--- a/test/test_fitsignal.py
+++ b/test/test_fitsignal.py
@@ -332,28 +332,30 @@ def assert_confidence_intervals(pci50,pci95,pfit,lb,ub):
assert not errors, "Errors occured:\n{}".format("\n".join(errors))
#---------------... | Internalize bootstrapping for fitsignal quantities
At the moment `fitsignal` does only return uncertainty quantification based on asymptotic approximation (covariance-based). If the user wants to get bootstrapped confidence intervals the `bootan` must be used. While for advanced users this might be simple:
```` python... | 0.0 | 182ef2fef45d98c19cf436b2388f0d96b135922e | [
"test/test_fitsignal.py::test_4pdeer",
"test/test_fitsignal.py::test_5pdeer",
"test/test_fitsignal.py::test_7pdeer",
"test/test_fitsignal.py::test_ovl4pdeer",
"test/test_fitsignal.py::test_ridme1",
"test/test_fitsignal.py::test_ridme3",
"test/test_fitsignal.py::test_ridme5",
"test/test_fitsignal.py::t... | [] | {
"failed_lite_validators": [
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2021-03-12 10:46:14+00:00 | mit | 302 | |
JoshData__python-email-validator-58 | diff --git a/README.md b/README.md
index 2ef35de..929b525 100644
--- a/README.md
+++ b/README.md
@@ -14,7 +14,7 @@ Key features:
login forms or other uses related to identifying users.
* Gives friendly error messages when validation fails (appropriate to show
to end users).
-* (optionally) Checks deliverability:... | JoshData/python-email-validator | ad53fb4166a10a09b76b4a9861a305017a98f5fc | diff --git a/tests/test_main.py b/tests/test_main.py
index af975ba..d2fd923 100644
--- a/tests/test_main.py
+++ b/tests/test_main.py
@@ -1,7 +1,9 @@
+from unittest import mock
+import dns.resolver
import pytest
from email_validator import EmailSyntaxError, EmailUndeliverableError, \
valid... | Idea: cache successful dns lookups?
Would it make sense to cache (in memory) dns records that got a match to prevent a large amount of dns lookups for common email providers like gmail.com, hotmail.com etc?
If also caching non matches is fine `functools.lru_cache` decorator could be added to validate_email_deliverab... | 0.0 | ad53fb4166a10a09b76b4a9861a305017a98f5fc | [
"tests/test_main.py::test_email_valid[Abc@example.com-output0]",
"tests/test_main.py::test_email_valid[Abc.123@example.com-output1]",
"tests/test_main.py::test_email_valid[user+mailbox/department=shipping@example.com-output2]",
"tests/test_main.py::test_email_valid[!#$%&'*+-/=?^_`.{|}~@example.com-output3]",
... | [] | {
"failed_lite_validators": [
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2020-11-14 22:04:36+00:00 | cc0-1.0 | 303 | |
JrGoodle__clowder-224 | diff --git a/clowder/cmd.py b/clowder/cmd.py
index cf55992f..940b8ff6 100644
--- a/clowder/cmd.py
+++ b/clowder/cmd.py
@@ -646,7 +646,7 @@ def exit_unrecognized_command(parser):
def exit_clowder_not_found():
"""Print clowder not found message and exit"""
- cprint('No clowder found in the current directory\n'... | JrGoodle/clowder | ba94600aa61ce6bc866644c461c89fe9ca67375b | diff --git a/test/test_git_utilities.py b/test/test_git_utilities.py
index 8b887c39..4bab4333 100644
--- a/test/test_git_utilities.py
+++ b/test/test_git_utilities.py
@@ -3,9 +3,9 @@ import os
import unittest
from clowder.utility.git_utilities import (
git_current_branch,
- git_current_sha,
git_is_detach... | Support short commit hashes
Use for output display | 0.0 | ba94600aa61ce6bc866644c461c89fe9ca67375b | [
"test/test_git_utilities.py::GitUtilitiesTest::test_ref_type_branch",
"test/test_git_utilities.py::GitUtilitiesTest::test_ref_type_sha",
"test/test_git_utilities.py::GitUtilitiesTest::test_ref_type_tag",
"test/test_git_utilities.py::GitUtilitiesTest::test_ref_type_unknown",
"test/test_git_utilities.py::GitU... | [] | {
"failed_lite_validators": [
"has_short_problem_statement",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false
} | 2017-09-16 23:42:03+00:00 | mit | 304 |
Subsets and Splits
Long Problem Statements
Retrieves a subset of problem statements within a specific length range, ordered by length, which provides basic filtering but limited analytical value.