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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'candidate_id', 'text_id', 'summary_id', 'ext_idx'})
This happened while the json dataset builder was generating data using
hf://datasets/nianlong/long-doc-extractive-summarization-truncated-pubmed/val.jsonl (at revision f1ffbafd975ea6b0192dfdb4ec05f5d99793f3a4)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2256, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
text: list<item: string>
child 0, item: string
summary: list<item: string>
child 0, item: string
ext_idx: list<item: int64>
child 0, item: int64
indices: list<item: list<item: int64>>
child 0, item: list<item: int64>
child 0, item: int64
score: list<item: double>
child 0, item: double
candidate_id: list<item: list<item: int64>>
child 0, item: list<item: int64>
child 0, item: int64
text_id: list<item: int64>
child 0, item: int64
summary_id: list<item: int64>
child 0, item: int64
to
{'text': Sequence(feature=Value(dtype='string', id=None), length=-1, id=None), 'summary': Sequence(feature=Value(dtype='string', id=None), length=-1, id=None), 'indices': Sequence(feature=Sequence(feature=Value(dtype='int64', id=None), length=-1, id=None), length=-1, id=None), 'score': Sequence(feature=Value(dtype='float64', id=None), length=-1, id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1321, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 935, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1027, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1122, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2013, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'candidate_id', 'text_id', 'summary_id', 'ext_idx'})
This happened while the json dataset builder was generating data using
hf://datasets/nianlong/long-doc-extractive-summarization-truncated-pubmed/val.jsonl (at revision f1ffbafd975ea6b0192dfdb4ec05f5d99793f3a4)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
text sequence | summary sequence | indices sequence | score sequence |
|---|---|---|---|
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"in iran a study among 752 high school girls in si... | [
"background : the present study was carried out to assess the effects of community nutrition intervention based on advocacy approach on malnutrition status among school - aged children in shiraz , iran.materials and methods : this case - control nutritional intervention has been done between 2008 and 2009 on 2897 p... | [
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"it occurs in more than 50 % of patients and may reach 90 % in certain types of cancers , especially in patients undergoing chemotherapy and/or radiation therapy.1 anemia is defined as an inadequate circulating level of hemoglobin ( hb ) ( hb < 12 g / dl ) and may arise as a result of the underlying disease , bleed... | [
"backgroundanemia in patients with cancer who are undergoing active therapy is commonly encountered and may worsen quality of life in these patients . the effect of blood transfusion is often temporary and may be associated with serious adverse events .",
"erythropoiesis - stimulating agents are not effective in ... | [
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"tardive dystonia ( td ) , a rarer side effect after longer exposure to antipsychotics , is characterized by local or general , sustained , involuntary contraction of a muscle or muscle group , with twisting movements , generally slow , which may affect the limbs , trunk , neck , or face .",
"td has been shown to... | [
"tardive dystonia ( td ) is a serious side effect of antipsychotic medications , more with typical antipsychotics , that is potentially irreversible in affected patients .",
"studies show that newer atypical antipsychotics have a lower risk of td . as a result , many clinicians may have developed a false sense of... | [
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"lepidoptera include agricultural pests that , through feeding and other activities , negatively affect stored grains , food and fiber crops [ 2 , 3 ] . since a single lepidoptera adult can produce hundreds of eggs , and their primary food source is typically plant material , they can cause significant damage to ag... | [
"many lepidopteran insects are agricultural pests that affect stored grains , food and fiber crops .",
"these insects have negative ecological and economic impacts since they lower crop yield , and pesticides are expensive and can have off - target effects on beneficial arthropods",
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"clinical features of syncope may include myoclonic jerks which are often multifocal and asynchronous , convulsions , and urin... | [
"we present an unusual case of recurrent cough syncope in a 43-year - old woman , which was initially thought to be seizures .",
"syncopal episodes were triggered by paroxysms of cough and were characterized by unresponsiveness and myoclonic jerks in her extremities .",
"she had a left - sided glomus jugulare t... | [
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"although the maternity care system for low - risk pregnant women pecul... | [
"objective .",
"the objective of this study was to describe the recent clinical characteristics of labor using 3 systems of japanese midwife - led primary delivery care , as follows : ( 1 ) those intending to give birth at home managed by midwives who do not belong to our hospital , ( 2 ) those planning to give b... | [
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"diabetes decreases the overall life expectancy and cause a heavy burden on public health ( 1 ) .",
"moreover , the asia - pacific region is considered to be on the verge of an emerging diabetes epidemic ( 2 ) .",
"the development of type 2 diabetes is affected by genetic and environmental determinants ( 3 ) ."... | [
"type 2 diabetes is characterized by insulin resistance , and enpp1 plays an important role in insulin resistance .",
"we investigated the association of the enpp1 k121q polymorphism with both diabetes and obesity ( body mass index [ bmi ] ) in korean male workers .",
"the study design was case - control .",
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"lipid apheresis provides a safe and effective means of treating patients with severe hyperlipidemia . it",
"functions by first separating plasma from blood cells with a cell separator and then using either the adsorption of apolipoprotein b by affinity columns containing anti - apolipoprotein b antibodies or dex... | [
"lipid apheresis is used to treat patients with severe hyperlipidemia by reducing low - density lipoprotein cholesterol ( ldl - c ) .",
"this study examines the effect of apheresis on the lipid panel and cardiac event rates before and after apheresis .",
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"an exponential rise in alzheimer 's disease ( ad ) prevalence rates is predicted to parallel the aging of baby boomers creating a potentially unsustainable economic burden to the healthcare system . delaying the onset or progression of ad , even modestly , by earlier pharmacological intervention could substantiall... | [
"we examined the usefulness of brief neuropsychological tests and serum a as a predictive test for detecting mci / ad in older adults .",
"serum a levels were measured from 208 subjects who were cognitively normal at enrollment and blood draw .",
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"increases in expression and binding of certain wnt ligands to ... | [
"we have previously demonstrated that rad6 and -catenin enhance each other 's expression through a positive feedback loop to promote breast cancer development / progression . while -catenin has been implicated in melanoma pathogenesis , rad6 function has not been investigated . here",
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"the guanine heterocyclic ring is rich in chemical reactivity toward oxidants and adduct - forming species . in dna , 2-deoxyguanosine ( dg , mass = m ) is the chief site for base oxidation due to its low redox potential leading to many products that are characterized by their mass signatures .",
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"upon oxidation of the heterocyclic ring in 2-deoxyguanosine ( dg ) , the initial electrophilic intermediate displays a wide range of reactivities with nucleophiles leading to many downstream products . in the present study ,",
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"agriculture has been one of the primary economic avenues in the philippines contributing to about 20 % to the gross domestic product ( gdp ) .",
"crops comprise about 47.56 % of the total agricultural sector and have contributed to about 510 billion pesos ( p510b ) to the country 's national income .",
"bengue... | [
"this was a cross - sectional study that investigated pesticide exposure and its risk factors targeting vegetable farmers selected through cluster sampling .",
"the sampling size calculated with p = .05 was 211 vegetable farmers and 37 farms .",
"the mean usage of pesticide was 21.35 liters .",
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"primary diffuse leptomeningeal gliomatosis ( pdlg ) is diagnosed when a glioma is located in the subarachnoid space , while intraparenchymal tumor lesions are absent .",
"pdlg must be distinguished from secondary meningeal gliomatosis resulting from a primary gliomatous cns tumor .",
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"objectiveprimary diffuse leptomeningeal gliomatosis ( pdlg ) is a rare neoplasm with a short survival time of a few months .",
"there is currently no standardized therapeutic approach for pdlg.materials and methodswe report on a 53-year - old male patient who presented with epileptic seizures , gait disturbance ... | [
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"purpose : to investigate to what degree the presence of hypertension ( htn ) and poor glycemic control ( gc ) influences the likelihood of having microalbuminuria ( mau ) among cuban americans with type 2 diabetes ( t2d ) .methods : a cross - sectional study conducted in cuban americans ( n = 179 ) with t2d .",
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"cancer is the second leading cause of mortality and morbidity in both developed and developing countries . in india ,",
"cancer prevalence is estimated around 2.5 million , with over 0.8 million new cases and 0.5 million deaths occurring each year .",
"there is an increase in the incidence of breast cancer and... | [
"introduction : breast cancer accounts for 19 - 34 % of all cancer cases among women in india .",
"there is high mortality due to late stage diagnosis as patients usually present at an advanced stage because of lack of awareness and nonexistent breast cancer screening programs .",
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"alzheimer 's disease ( ad ) is a neurodegenerative disorder that is clinically characterized by progressive mental decline and histopathologically defined by highly abundant amyloid deposits and neurofibrillary tangles in the brain parenchyma .",
"the identification of mutations within the amyloid precursor prot... | [
"the amyloid cascade hypothesis remains a robust model of ad neurodegeneration .",
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"musculoskeletal tissues show increased bone fragility , loss of cartilage resilience , reduced ligament elasticity , loss of muscular strength , and fat redistribution decreasing the ability of the tissues to carry out their normal functions .",
"the loss of mobility and physical independence resulting from arth... | [
"musculoskeletal disorders are among the most common problems affecting the elderly .",
"the resulting loss of mobility and physical independence can be particularly devastating in this population .",
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"migraine is the leading neurological cause for seeking medical care , and is associated with significant disability in the sufferer .",
"the greatest impact is on migraineurs with headaches on more days than not , a condition defined as chronic migraine ( cm ) .",
"cm is defined as at least 15 days of headache... | [
"although the association between episodic migraine and psychiatric comorbidities is well documented , few studies have focused on the comorbidity with chronic migraine ( cm ) and discrepancies exist between population - based and clinic - based data .",
"the objective of this study is to compare demographic and ... | [
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"oxidative stress triggers dna and lipid peroxidation , leading to the formation of electrophiles that react with dna to form adducts .",
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"crvo is characterized by occlusion of the central retinal vein and consecutive damming of the venous blood flow .",
"the occlusion ma... | [
"purposeto evaluate the association between the size of peripheral retinal nonperfusion and the number of intravitreal ranibizumab injections in patients with treatment - nave central retinal vein occlusion ( crvo ) .methodsfifty - four patients with treatment - nave crvo and macular edema were included .",
"each... | [
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"sbos related to adhesions occur after laparoscopic roux - en - y gastric bypass ( lgb ) , but ih formation ... | [
"background and objectives : there is a wide variation of reported incidence of small bowel obstruction ( sbo ) after laparoscopic roux - en - y gastric bypass ( lgb ) .",
"there is also wide variation in technique , not only in placement of the roux limb , but also regarding closure or nonclosure of the mesenter... | [
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"several studies have revealed that cs is a major contributor to vascular diseases because it accelerates the... | [
"cigarette smoke is considered a major risk factor for vascular diseases .",
"there are many toxic compounds in cigarette smoke , including acrolein and other , -unsaturated aldehydes , which are regarded as mediators of inflammation and vascular dysfunction .",
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"ca - binding proteins such as calmodulin play a pivotal role in ca signal transmission and amplification .",
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"ca2+/calmodulin - dependent protein kinase ii ( camkii ) functions both in regulation of insulin secretion and neurotransmitter release through common downstream mediators .",
"therefore , we hypothesized that pancreatic - cells acquire and store the information contained in calcium pulses as a form of metabolic... | [
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"health is not only related to the absence of the disease , therefore we need to conceptualize and operationalize what health is . increasingly , we have come to understand that information about functional status is needed in order to appreciate the full picture regarding the health of an individual or a populatio... | [
"a common framework for describing functional status information ( fsi ) in health records is needed in order to make this information comparable and of value .",
"the world health organization 's ( who 's ) international classification of functioning , disability and health ( icf ) , which has been approved by a... | [
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"the centers for disease control and prevention ( cdc ) and united states preventive services task force ( uspstf ) recommend universal hiv screening for all pregnant women entering prenatal care [ 1 , 2 ] .",
"this screening enables hiv - infected women and their infants to benefit from appropriate and timely in... | [
"objective . to examine risk factors for false positive hiv enzyme immunoassay ( eia ) testing at delivery",
". study design .",
"a review of pregnant women who delivered at parkland hospital between 2005 and 2008 was performed .",
"patients routinely received serum hiv eia testing at delivery , with positive... | [
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"the increasing occurrence of disorders such as type 2 diabetes during childhood is believed to be a consequence of this obesity epidemic .",
"in addition to several behavioral and dietary risk fact... | [
"the present study was designed to explore the effects of gas6 and axl gene polymorphisms on adiposity , systemic inflammation , and insulin resistance in adolescents .",
"after multistage sampling from the data of the taipei children heart study - iii , we collected 358 boys and 369 girls with an average age of ... | [
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"couples , who are faced with this critical situation , are prone to depression , a... | [
"introduction : the process of assisted reproductive treatment is a stressful situation in the treatment of infertile couples and it would harm the mental health of women .",
"fertile women who started infertility treatment due to male factor infertility have reported to experience less stress and depression than... | [
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"postural sway has been shown in older adults to be strongly related to other measures of balance .",
"multivaria... | [
"introduction .",
"low serum vitamin d levels are associated with increased postural sway .",
"vitamin d varies seasonally .",
"this study investigates whether postural sway varies seasonally and is associated with serum vitamin d and falls",
". methods . in a longitudinal observational study , eighty - eig... | [
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"lead com... | [
"backgroundthe abortifacient claim of senna alata ( s. alata ) was scientifically validated recently with alkaloids speculated to be the bioactive agent .",
"this speculation is yet to be substantiated or refuted by scientific evidence .",
"the present study was aimed to investigate the pregnancy terminating ef... | [
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"erg protein expression has been recently suggested to be reflective of erg gene rearrangements in prostate cancer ( pca ) documenting remarkable concordance between the two [ 16 ] .",
"the rearrangements between the androgen receptor - regulated gene tmprss2 ( 21q22.3 ) and members of the ets family member of tr... | [
"background .",
"the prognostic significance of erg expression in prostate cancer ( pca ) has generated mixed results .",
"we sought to investigate the prognostic significance of erg expression in a localized cohort of men with pca .",
"material and methods .",
"we investigated erg protein expression in a c... | [
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"the three main arteries of the leg , the anterior tibial artery ( ata ) , posterior tibial artery and peroneal artery , form a dense vascular network around the distal leg , ankle , and foot , which ramifies perforators as the basis of all kinds of pedicle flaps such as lateral or medial malleolar perforator flaps... | [
"purpose : a further understanding of the anterior supramalleolar artery ( asma ) and its potential applications in reconstructive surgery.materials and methods : a total of 24 fresh lower limbs from fresh cadavers were injected with red latex for dissection . the type of origin , course , diameter of the pedicle ,... | [
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"ankle dorsiflexion passive range of motion ( df prom ) measurements are performed in the field of physical therapy to estimate ankle motion during functional activities1 and to prevent lower extremity injuries2 .",
"although in the clinical setting , ankle df prom is frequently measured under non - weight - bear... | [
"[ purpose ] the purpose of this study was to investigate the effect of gastrocnemius stretching combined with talocrural joint mobilization on weight - bearing ankle dorsiflexion passive range of motion .",
"[ subjects ] eleven male subjects with bilateral limited ankle dorsiflexion passive range of motion with ... | [
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"dox is an antibiotic anthracycline that was isolated from a pigment of streptomyces peucetius in the early 1960s and it had been employed for more than 30 years in the battle ag... | [
"nephrotoxicity is one of the limiting factors for using doxorubicin ( dox ) .",
"interleukin 1 has major role in dox - induced nephrotoxicity , so we investigated the effect of interleukin 1 receptor antagonist diacerein ( dia ) on dox - induced nephrotoxicity .",
"dia ( 25 and 50 mg / kg / day ) was administe... | [
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"statistics korea report 2014 showed that suicide is the cause of 28.4 % of adolescent deaths in 2013 , and it was the number one cause of death among adolescents ( 2 ) .",
"furthermore , s... | [
"suicide is a leading cause of death among adolescents globally , and body weight is also a recognized reason for adolescent suicide .",
"therefore , we investigated the association between weight control behaviors ( wcb ) and suicide ideation and attempt , focusing on inappropriate weight control measures .",
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"in the past 15 years , green fluorescent protein ( gfp ) has changed from a nearly unknown protein to a commonly used molecular imaging tool in biology , chemistry , genetics , and medicine . in 2006 , more than 10 000 papers",
"gfps and gfp - like proteins ( i.e . , chromoproteins and fluorescent proteins ) are... | [
"green fluorescent protein ( gfp ) and gfp - like fluorescent proteins owe their photophysical properties to an autocatalytically formed intrinsic chromophore . according to quantum mechanical calculations ,",
"the excited state of chromophore model systems has significant dihedral freedom , which may lead to flu... | [
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"these tumors are classified as typical net ( tnet ) , goblet cell carcinoid ( gcc ) , and atypical gcc histologies .",
"ex - goblet or composite - goblet are further classified into signet ring cell carcinoid ( srcc ) and poorly differentiated adenocarcinoid of the appendix .",
"these tumors have a distinctive... | [
"purposeappendiceal tumors are a heterogeneous group of diseases that include typical neuroendocrine tumors ( tnet ) , goblet cell carcinoids ( gcc ) , and atypical gcc .",
"atypical gcc are classified into signet - ring cell cancers ( srcc ) and poorly differentiated appendiceal adenocarcinoids .",
"the progno... | [
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"an estimated 170 million people worldwide have hepatitis c virus ( hcv ) infection and over 20,000 new cases emerge every year . hcv infection frequently persists and may cause cirrhosis and hepatocellular carcinoma . in the us and most developed nations , where the prevalence of infection is 1 % 2 % , hcv is the ... | [
"purposeto evaluate retinopathy associated with interferon therapy in patients with chronic hepatitis c.methodsone hundred patients with chronic hepatitis c undergoing interferon therapy were examined for the presence of cotton wool spots , retinal hemorrhages , cystoid macular edema , capillary non - perfusion , a... | [
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"women require special need - based health care programs as they pass through the menopausal transition . with this vision , a multisystem multispecialty health check - up and follow - up care program ( maitreyi health care program [ hcp ] )",
"was initiated by our team about a decade ago , and this has been cont... | [
"objective : to determine the prevalence of premenstrual cyclic symptoms in perimenopausal age.subjects and methods : women attending bhavan 's sparc maitreyi 's health care programme ( hcp ) for women around 40 years of age were included in the study . last 200 women who attended from april 2002 to october 2004 ar... | [
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"according to the korean national statistical office , the main cause of death in korea was cancer in 2012 .",
"the total number of deaths due to cancer in 2012 was 267,221 , which was increased by 9,825 ( 3.8 % ) compared to 2011.1 this was the all - time high since 1983 .",
"currently , the treatment of cance... | [
"the number of death due to cancer has been increasing in korea .",
"chemotherapy is known to cause side effects because it damages not only cancerous cells but healthy cells . recently",
", attention has focused on food - derived chemopreventive and anti - tumor agents or formulations with fewer side effects .... | [
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