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zionist/mon
mon/apps/build/migrations/0012_auto__chg_field_ground_developer__del_field_copybuilding_building_stat.py
# -*- coding: utf-8 -*- from south.utils import datetime_utils as datetime from south.db import db from south.v2 import SchemaMigration from django.db import models class Migration(SchemaMigration): def forwards(self, orm): # Changing field 'Ground.developer' db.alter_column(u'build_ground', 'de...
liamfraser/lantex
parser/grako.py
#!/usr/bin/env python # -*- coding: utf-8 -*- # # CAVEAT UTILITOR # This file was automatically generated by Grako. # https://bitbucket.org/apalala/grako/ # Any changes you make to it will be overwritten the # next time the file is generated. # from __future__ import print_function, division, absolute_import, unico...
colour-science/colour
colour/models/rgb/transfer_functions/cineon.py
""" Kodak Cineon Encoding ===================== Defines the *Kodak Cineon* encoding: - :func:`colour.models.log_encoding_Cineon` - :func:`colour.models.log_decoding_Cineon` References ---------- - :cite:`SonyImageworks2012a` : Sony Imageworks. (2012). make.py. Retrieved November 27, 2014, from https://...
cedriclaunay/gaffer
python/GafferTest/SequencePathTest.py
########################################################################## # # Copyright (c) 2012-2013, Image Engine Design Inc. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are # met: # # * Redi...
DemocracyClub/EveryElection
every_election/apps/elections/migrations/0052_auto_20181005_1645.py
# -*- coding: utf-8 -*- # Generated by Django 1.11.16 on 2018-10-05 16:45 from __future__ import unicode_literals from django.db import migrations class Migration(migrations.Migration): dependencies = [("elections", "0051_auto_20181005_1618")] operations = [ migrations.AlterModelOptions( ...
jokey2k/sentry
src/sentry/utils/pytest.py
from __future__ import absolute_import import mock import os from django.conf import settings def pytest_configure(config): os.environ['RECAPTCHA_TESTING'] = 'True' if not settings.configured: os.environ['DJANGO_SETTINGS_MODULE'] = 'sentry.conf.server' # only configure the db if its not al...
rapidpro/rapidpro-python
temba_client/utils.py
import json import iso8601 import pytz import requests def parse_iso8601(value): """ Parses a datetime as a UTC ISO8601 date """ if not value: return None return iso8601.parse_date(value) def format_iso8601(value): """ Formats a datetime as a UTC ISO8601 date or returns None if...
EtienneCmb/tensorpac
examples/misc/plot_itc.py
""" ================================================ Compute and plot the Inter-Trial Coherence (ITC) ================================================ This example illustrate how to compute and plot the Inter-Trial Coherence (ITC). The ITC can be used to inspect if phases are aligned across trials or said differently,...
nuagenetworks/bambou
tests/functionnal/enterprise/test_create_enterprise.py
# -*- coding: utf-8 -*- from unittest import TestCase from mock import patch from bambou.exceptions import BambouHTTPError from tests.utils import MockUtils from tests.functionnal import start_session, get_valid_enterprise class Create(TestCase): @classmethod def setUpClass(self): self.user = start...
michalbachowski/pyevent
setup.py
#!/usr/bin/env python # -*- coding: utf-8 -*- from setuptools import setup # monkey patch os.link to force using symlinks import os del os.link setup(name='PyEvent', url='https://github.com/michalbachowski/pyevent', version='1.0.0', description='Python implementation of PHP`s (from Symfony Components) E...
ODM2/ODM2WebSDL
src/hydroshare_util/resource.py
import logging import os import json from django.http import Http404 from tempfile import mkstemp from re import search as regex_search from hs_restclient import HydroShareNotFound, HydroShareNotAuthorized from hydroshare_util.adapter import HydroShareAdapter from . import HydroShareUtilityBaseClass from coverage impor...
harvard-vpal/bridge-adaptivity
bridge_adaptivity/config/settings/local.py
# flake8: noqa: F405 from config.settings.base import * # noqa: F403 TEST_RUNNER = 'config.test_runner.PytestTestRunner' SECRET_KEY = secure.SECRET_KEY DATABASES = secure.DATABASES # Configure Bridge host with is used for lis_outcome_service_url composition BRIDGE_HOST = secure.BRIDGE_HOST try: # Engine for A...
Boberito25/ButlerBot
rosbuild_ws/src/behaviors/src/behaviors/msg/_Completed.py
"""autogenerated by genpy from behaviors/Completed.msg. Do not edit.""" import sys python3 = True if sys.hexversion > 0x03000000 else False import genpy import struct class Completed(genpy.Message): _md5sum = "5360d8dc63ebb508e9d3b0ff75130e31" _type = "behaviors/Completed" _has_header = False #flag to mark the ...
etonello/crnpy
tests/test_complex.py
#!/usr/bin/env python """Tests for Reaction class.""" import unittest import sympy as sp from crnpy.crn import CRN, from_react_file from crnpy.crncomplex import Complex from crnpy.parsereaction import parse_complex, parse_expr __author__ = "Elisa Tonello" __copyright__ = "Copyright (c) 2016, Elisa Tonello" __licen...
bischjer/auxiliary
aux/api/__init__.py
import paramiko from aux.protocol.http import HTTPClient from aux.protocol.ssh import SSHClient # def run(engine, func, *args, **kwargs): # engine.start() # try: # func(*args, **kwargs) # finally: # results = engine.stop() # return results ssh = SSHClient() http = HTTPClient()
ustudio/nose_connection_report
setup.py
#!/usr/bin/env python from setuptools import setup setup( name="nose_connection_report", version="0.2", description = "Nose testing framework plugin for monitoring network connections", author = "Thomas Stephens, John J. Lee, Dan McCombs", author_email = "thomas@ustudio.com", license = "BSD",...
YouNeedToSleep/sleepy
src/sleepy/conf/development.py
from sleepy.conf.base import * DEBUG = True TEMPLATE_DEBUG = True DATABASES = { 'default': { 'ENGINE': 'django.db.backends.postgresql_psycopg2', 'NAME': 'sleepy_dev', } } SOCIAL_AUTH_GOOGLE_OAUTH2_KEY = '' # noqa SOCIAL_AUTH_GOOGLE_OAUTH2_SECRET = '' SOCIAL_AUTH_TWITTER_KEY = '' SOCIAL_AUT...
carrerasrodrigo/torrent_scrapper
torrent_scrapper/Browser.py
import requests from bs4 import BeautifulSoup class Browser: def __init__(self): self.session = requests.Session() def get(self, url, params=None): f = self.session.get(url, params=params) return f.content def post(self, url, params=None): pass def get_soup(self, ur...
sunlightlabs/tcamp
tcamp/camp/management/commands/exportenv.py
import re import json import sys import StringIO from importlib import import_module from optparse import make_option from django.core.management.base import BaseCommand class Command(BaseCommand): help = '''Serializes individual settings items into json-safe strings suitable for dumping into a .en...
kaushik94/sympy
sympy/strategies/core.py
""" Generic SymPy-Independent Strategies """ from __future__ import print_function, division from sympy.core.compatibility import get_function_name identity = lambda x: x def exhaust(rule): """ Apply a rule repeatedly until it has no effect """ def exhaustive_rl(expr): new, old = rule(expr), expr ...
quantmind/pulsar
pulsar/cmds/pypi_version.py
"""Check PyPI version """ from distutils.cmd import Command from distutils.errors import DistutilsError try: from xmlrpc.client import ServerProxy except ImportError: from xmlrpclib import ServerProxy class InvalidVersion(DistutilsError): pass class PyPi(Command): description = ( 'Validate ...
swarna-k/MyDiary
db_repository/versions/005_migration.py
from sqlalchemy import * from migrate import * from migrate.changeset import schema pre_meta = MetaData() post_meta = MetaData() entry = Table('entry', post_meta, Column('id', Integer, primary_key=True, nullable=False), Column('name', String(length=100)), Column('body', String(length=5000)), Column('t...
pdebuyl/pyh5md
pyh5md/h5md_module.py
import numpy as np import h5py CHUNK_0_MAX=32 CHUNK_1_MAX=128 class Element(object): def append(self, *args, **kwargs): raise NotImplementedError class FixedElement(h5py.Dataset, Element): def __init__(self, loc, name, **kwargs): if name in loc: d = loc[name] else: ...
klusta-team/kwiklib
setup.py
from setuptools import setup setup( name='kwiklib', version='0.3.7', author='KwikTeam', author_email='rossant@github', packages=[ 'kwiklib', 'kwiklib.dataio', 'kwiklib.dataio.tests', 'kwiklib.scripts', 'kwiklib.utils', ...
ihuston/pyflation
pyflation/analysis/test/test_nonadiabatic.py
""" test_nonadiabatic - Test functions for nonadiabatic module """ #Author: Ian Huston #For license and copyright information see LICENSE.txt which was distributed with this file. import numpy as np from numpy.testing import assert_, assert_raises, \ assert_equal,\ ...
DemocracyClub/UK-Polling-Stations
polling_stations/apps/data_importers/management/commands/import_wakefield.py
from data_importers.management.commands import BaseDemocracyCountsCsvImporter class Command(BaseDemocracyCountsCsvImporter): council_id = "WKF" addresses_name = ( "2021-03-24T10:33:03.462547/Democracy Club Polling Districts 24_03_21.csv" ) stations_name = ( "2021-03-24T10:33:03.462547/...
davebridges/ExperimentDB
external/views.py
'''This app contains the views for the external app. ''' from django.views.generic import DetailView, CreateView, UpdateView, DeleteView, ListView from braces.views import LoginRequiredMixin, PermissionRequiredMixin from external.models import Reference, Vendor, Contact class PaperListView(ListView): '''This class...
kfranson/TNODatabase
TNODatabase/TNODatabase.py
from __future__ import print_function from __future__ import division import easyaccess as ea import pandas as pd import numpy as np import ephem from Orbit import Orbit from calendar import monthrange from MPCRecord import MPCToTNO from astropy.coordinates import SkyCoord class Connect: """ Interacts with TN...
GenericMappingTools/gmt-python
examples/projections/misc/misc_mollweide.py
""" Mollweide ========= This pseudo-cylindrical, equal-area projection was developed by the German mathematician and astronomer Karl Brandan Mollweide in 1805. Parallels are unequally spaced straight lines with the meridians being equally spaced elliptical arcs. The scale is only true along latitudes 40°44’ north and ...
pnelson/flask-passport
setup.py
""" Flask-Passport -------------- Flask authorization and authentication helpers. """ from setuptools import setup setup( name="Flask-Passport", version="0.1.0", url="https://github.com/pnelson/flask-passport", license="BSD", author="Philip Nelson", author_email="me@pnelson.ca", descripti...
PacificBiosciences/rDnaTools
src/pbrdna/utils.py
import os import sys import logging from collections import namedtuple BlasrM1 = namedtuple('BlasrM1', ['qname', 'tname', 'qstrand', 'tstrand', 'score', 'pctsimilarity', 'tstart', 'tend', 'tlength', 'qstart', 'qend', 'q...
DLR-SC/DataFinder
test/unittest/datafinder_test/persistence/common/__init__.py
# $Filename$ # $Authors$ # Last Changed: $Date$ $Committer$ $Revision-Id$ # # Copyright (c) 2003-2011, German Aerospace Center (DLR) # All rights reserved. # # #Redistribution and use in source and binary forms, with or without #modification, are permitted provided that the following conditions are #met: # ...
arocchi/Klampt
Python/klampt/cspace.py
"""This module provides convenient access to the motionplanning module functionality by defining the CSpace and MotionPlan classes.""" import motionplanning import random class CSpace: """Used alongside MotionPlan to define a configuration space for motion planning. Attributes: - eps: the collisio...
JohnRandom/django-aggregator
dasdocc/aggregator/templatetags/aggregates.py
try: from settings import aggregate_feeds_template except ImportError: from dasdocc.aggregator.aggregator_settings import aggregate_feeds_template import ttag from django import template from django.conf import settings from dasdocc.aggregator.models import Feed, Entry, StaticContent as StaticContentModel register = ...
stscieisenhamer/ginga
ginga/rv/plugins/Pan.py
# # Pan.py -- Pan plugin for fits viewer # # This is open-source software licensed under a BSD license. # Please see the file LICENSE.txt for details. # import sys import traceback import math from ginga.BaseImage import BaseImage from ginga.gw import Widgets, Viewers from ginga.misc import Bunch from ginga import Ging...
adamrp/american-gut-web
amgut/lib/data_access/ag_data_access.py
from __future__ import division # ----------------------------------------------------------------------------- # Copyright (c) 2014--, The American Gut Development Team. # # Distributed under the terms of the BSD 3-clause License. # # The full license is in the file LICENSE, distributed with this software. # --------...
wrboyce/hueman
docs/conf.py
# -*- coding: utf-8 -*- import hueman # -- General configuration ----------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be extensions # coming with Sphinx (na...
sievetech/hived
tests/test_log.py
import json import unittest import mock from hived.log import json_handler, JsonFormatter class SampleObject: def __repr__(self): return "I'm an object" class ISOObject(SampleObject): def isoformat(self): return "ISOFORMAT" class Record: def __init__(self, msg, event=None): se...
SimonSapin/cairocffi
cairocffi/test_xcb.py
""" cairocffi.test_xcb ~~~~~~~~~~~~~~~~~~ Test suite for cairocffi.xcb. :copyright: Copyright 2014-2019 by Simon Sapin :license: BSD, see LICENSE for details. """ import os import time import pytest xcffib = pytest.importorskip('xcffib') # noqa import xcffib.xproto # noqa isort:skip from xc...
Pytwitcher/pytwitcherapi
test/test_chat_message.py
import pytest from pytwitcherapi import chat from pytwitcherapi.chat import message @pytest.mark.parametrize('text,expected', [('hallo!', 'hallo!'), ('ciao bella', 'ciao ...')]) def test_repr(text, expected): source = chat.Chatter('me') target = '#you' msg = mes...
youtube/cobalt
third_party/llvm-project/lldb/packages/Python/lldbsuite/test/lang/c/bitfields/TestBitfields.py
"""Show bitfields and check that they display correctly.""" from __future__ import print_function import os import time import lldb from lldbsuite.test.decorators import * from lldbsuite.test.lldbtest import * from lldbsuite.test import lldbutil class BitfieldsTestCase(TestBase): mydir = TestBase.compute_mydi...
awesto/django-shop
shop/admin/defaults/commodity.py
from django.conf import settings from django.contrib import admin from django.utils.translation import gettext_lazy as _ from adminsortable2.admin import SortableAdminMixin from cms.admin.placeholderadmin import PlaceholderAdminMixin, FrontendEditableAdminMixin from shop.admin.product import CMSPageAsCategoryMixin, Uni...
cuauv/software
libshm/generate_dshm.py
#!/usr/bin/env python3 # generate_dshm.py parses the file at libshm/vars.conf using libshm/parse.py # and generates: # - dshm_index # - c/dshm.h # - c/dshm.c # Note: this imposes the following additional "restrictions" on vars.conf: # - groups and variables names are case insensitive # - "__" (double underscore) is i...
endlessm/chromium-browser
third_party/catapult/third_party/gsutil/gslib/addlhelp/apis.py
# -*- coding: utf-8 -*- # Copyright 2014 Google Inc. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless require...
unomena/unobase
unobase/support/urls.py
__author__ = 'michael' from django.conf.urls.defaults import patterns, url from unobase.support import views, forms from unobase.mixins import login_required urlpatterns = patterns('', # Case request url(r'^overview/$', views.CaseList.as_view( template_name='support/case/case_list.html')...
WaveBlocks/WaveBlocksND
examples/henon_heiles/eigenstates[eps=0.5].py
dimension = 2 ncomponents = 1 potential = "henon_heiles" eigenstate_of_level = 0 eigenstates_indices = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12] starting_point = [0, 0] eps = 0.5 hawp_template = { "type": "HagedornWavepacket", "dimension": dimension, "ncomponents": ncomponents, "eps": eps, "b...
ConnorMcMahon/geoinference
python/src/geolocate/geolocation/geo_median.py
__author__ = 'joh12041' # Code largely taken from: https://gist.github.com/endolith/2837160 # with some help from https://github.com/ahwolf/meetup_location/blob/master/code/geo_median.py # and adapted to support great circle distances over Euclidean. from geopy.distance import vincenty from geopy.distance import gr...
jbittel/base32-crockford
setup.py
#!/usr/bin/env python from setuptools import setup import base32_crockford setup( name='base32-crockford', version='0.3.0', description=("A Python implementation of Douglas Crockford's " "base32 encoding scheme"), long_description=base32_crockford.__doc__, license='BSD', aut...
andresriancho/billiard
billiard/reduction.py
# # Module which deals with pickling of objects. # # multiprocessing/reduction.py # # Copyright (c) 2006-2008, R Oudkerk # Licensed to PSF under a Contributor Agreement. # from __future__ import absolute_import import functools import io import os import pickle import socket import sys __all__ = ['send_handle', 'recv...
the-it-dude/django_rest_hipchat
django_rest_hipchat/migrations/0006_installation_integration.py
# -*- coding: utf-8 -*- # Generated by Django 1.11.3 on 2017-08-01 07:30 from __future__ import unicode_literals from django.db import migrations, models import django.db.models.deletion class Migration(migrations.Migration): dependencies = [ ('django_rest_hipchat', '0005_installation_uninstalled'), ...
qedsoftware/commcare-hq
custom/ilsgateway/zipline/reports/zipline_report.py
from corehq.apps.reports.datatables import DataTablesHeader from corehq.apps.reports.generic import GenericTabularReport from corehq.apps.reports.standard import CustomProjectReport, DatespanMixin from corehq.toggles import EMG_AND_REC_SMS_HANDLERS class ZiplineReport(CustomProjectReport, GenericTabularReport, Datesp...
geggo/pyface
pyface/ui/qt4/tasks/split_editor_area_pane.py
# Standard library imports. import sys # Enthought library imports. from pyface.tasks.i_editor_area_pane import IEditorAreaPane, \ MEditorAreaPane from traits.api import Bool, cached_property, Callable, Dict, Instance, List, \ on_trait_change, Property, provides, Str from pyface.qt import QtCore, QtGui from py...
squirrelo/qiita
qiita_db/base.py
r""" Base objects (:mod: `qiita_db.base`) ==================================== ..currentmodule:: qiita_db.base This module provides base objects for dealing with any qiita_db object that needs to be stored on the database. Classes ------- ..autosummary:: :toctree: generated/ QiitaObject QiitaStatusObje...
sideffect0/django-tastypie
tastypie/resources.py
from __future__ import unicode_literals from __future__ import with_statement from copy import deepcopy from datetime import datetime import logging from time import mktime import warnings from wsgiref.handlers import format_date_time import django from django.conf import settings from django.conf.urls import patterns...
fenceFoil/canopto
tiletest.py
import pygame from pygame.locals import * import wx import sys, os if sys.platform == 'win32' or sys.platform == 'win64': os.environ['SDL_VIDEO_CENTERED'] = '1' pygame.init() icon = pygame.Surface((1,1)); icon.set_alpha(0); pygame.display.set_icon(icon) pygame.display.set_caption("TileTest - Ian Mallett") def Choo...
SEL-Columbia/commcare-hq
corehq/apps/app_manager/exceptions.py
import couchdbkit class AppManagerException(Exception): pass class VersioningError(AppManagerException): """For errors that violate the principles of versioning in VersionedDoc""" pass class ModuleNotFoundException(AppManagerException, IndexError): pass class FormNotFoundException(AppManagerExce...
mmcloughlin/finsky
finsky/protos/legal_message_outer_class_pb2.py
# Generated by the protocol buffer compiler. DO NOT EDIT! # source: legal_message_outer_class.proto import sys _b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1')) from google.protobuf import descriptor as _descriptor from google.protobuf import message as _message from google.protobuf import re...
CGATOxford/CGATPipelines
CGATPipelines/pipeline_docs/pipeline_template/trackers/TemplateReport.py
from CGATReport.Tracker import * from CGATReport.Utils import PARAMS as P ################################################################### ################################################################### # parameterization EXPORTDIR = P['template_exportdir'] DATADIR = P['template_datadir'] DATABASE = P['templ...
pferreir/indico
indico/modules/events/papers/operations.py
# This file is part of Indico. # Copyright (C) 2002 - 2021 CERN # # Indico is free software; you can redistribute it and/or # modify it under the terms of the MIT License; see the # LICENSE file for more details. import mimetypes from operator import attrgetter from flask import session from indico.core.db import db...
waldocollective/swiftwind
swiftwind/core/management/commands/run_scheduler.py
import logging import schedule import time from django.core.management.base import BaseCommand from swiftwind.accounts.tasks import import_tellerio logger = logging.getLogger(__name__) class Command(BaseCommand): help = 'Run the scheduler which executes periodic tasks' def handle(self, *args, **options): ...
toumorokoshi/transmute-core
transmute_core/tests/test_handler.py
import json import pytest from transmute_core.handler import process_result from transmute_core import default_context, APIException, Response CONTENT_TYPE = "application/json" class SomeOtherException(Exception): pass def test_process_result_200(complex_transmute_func): result = {"kind": "dog", "age": 5} ...
vaporry/pydevp2p
devp2p/app.py
from UserDict import IterableUserDict from service import BaseService from slogging import get_logger import utils import crypto from devp2p import __version__ log = get_logger('app') class BaseApp(object): default_config = dict(client_version='pydevp2p {}'.format(__version__), deactiva...
yunlongliukm/chm1_scripts
Genotyping/CombineCountFiles.py
#!/usr/bin/env python import sys import argparse ap = argparse.ArgumentParser(description="Combine multiple .count files into one.") ap.add_argument("--input", help="input files", nargs="+") ap.add_argument("--output", help="output files") args = ap.parse_args() def GetLines(filename): f = open(filename) r...
engineer0x47/SCONS
engine/SCons/Tool/gdc.py
"""SCons.Tool.gdc Tool-specific initialization for the GDC compiler. (https://github.com/D-Programming-GDC/GDC) Developed by Russel Winder (russel@winder.org.uk) 2012-05-09 onwards Compiler variables: DC - The name of the D compiler to use. Defaults to gdc. DPATH - List of paths to search for import modules...
spacy-io/spaCy
spacy/lang/nb/syntax_iterators.py
from typing import Union, Iterator from ...symbols import NOUN, PROPN, PRON from ...errors import Errors from ...tokens import Doc, Span def noun_chunks(doclike: Union[Doc, Span]) -> Iterator[Span]: """Detect base noun phrases from a dependency parse. Works on Doc and Span.""" # fmt: off labels = ["nsubj...
edx/django-oauth2-provider
provider/oauth2/admin.py
from django.contrib import admin from provider.oauth2.models import AccessToken, Grant, Client, RefreshToken @admin.register(AccessToken) class AccessTokenAdmin(admin.ModelAdmin): list_display = ('user', 'client', 'token', 'expires', 'scope',) raw_id_fields = ('user',) @admin.register(Grant) class GrantAdm...
bittner/django-allauth
allauth/socialaccount/providers/ynab/views.py
import requests from allauth.socialaccount.providers.oauth2.views import ( OAuth2Adapter, OAuth2CallbackView, OAuth2LoginView, ) from .provider import YNABProvider class YNABOAuth2Adapter(OAuth2Adapter): provider_id = YNABProvider.id access_token_url = 'https://app.youneedabudget.com/oauth/token...
nlgcoin/guldencoin-official
contrib/zmq/zmq_sub.py
#!/usr/bin/env python3 # Copyright (c) 2014-2016 The Bitcoin Core developers # Distributed under the MIT software license, see the accompanying # file COPYING or http://www.opensource.org/licenses/mit-license.php. """ ZMQ example using python3's asyncio Bitcoin should be started with the command line argument...
jemdwood/cs234_proj
viewer.py
import pyglet class SimpleImageViewer(object): """ Modified version of gym viewer to chose format (RBG or I) see source here https://github.com/openai/gym/blob/master/gym/envs/classic_control/rendering.py """ def __init__(self, display=None): self.window = None self.isope...
chilland/scraper
scraper_sched.py
from functools import wraps import errno import os import signal from scraper import run_scraper from apscheduler.schedulers.blocking import BlockingScheduler from apscheduler.triggers.cron import CronTrigger class TimeoutError(Exception): pass def timeout(seconds=10, error_message=os.strerror(errno.ETIME)): ...
Cyberbio-Lab/bcbio-nextgen
bcbio/variation/recalibrate.py
"""Perform quality score recalibration with the GATK toolkit. Corrects read quality scores post-alignment to provide improved estimates of error rates based on alignments to the reference genome. http://www.broadinstitute.org/gsa/wiki/index.php/Base_quality_score_recalibration """ import os import toolz as tz from ...
romansalin/django-seo
djangoseo/admin.py
from __future__ import unicode_literals from django import forms from django.contrib import admin from django.contrib.contenttypes.forms import BaseGenericInlineFormSet from django.contrib.contenttypes.admin import GenericStackedInline from django.contrib.contenttypes.models import ContentType from django.utils.encodi...
p-lauer/spotpy
spotpy/examples/spot_setup_cmf1d.py
''' Copyright 2015 by Tobias Houska This file is part of Statistical Parameter Estimation Tool (SPOTPY). :author: Tobias Houska A one dimensional cmf model analysing data from the FACE experiment. You need to have cmf installed on your system: svn checkout svn://fb09-pasig.umwelt.uni-giessen.de/cmf/trunk cmf ''' imp...
barthisrael/OmniDB
OmniDB/OmniDB/runtime_settings.py
import os, shutil from . import custom_settings BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) if custom_settings.DEV_MODE: HOME_DIR = BASE_DIR elif custom_settings.HOME_DIR: HOME_DIR = custom_settings.HOME_DIR else: if custom_settings.DESKTOP_MODE: HOME_DIR = os.path.join(...
parlar/calls2xls
external/CrossMap/usr/lib64/python2.7/site-packages/cmmodule/annoGene.py
import collections from bx.intervals import * from cmmodule import BED '''Compare given bed entry to reference gene model''' def getCDSExonFromFile(bedfile): '''Only Extract CDS exon regions from input bed file (must be 12-column).''' ret_lst=[] for f in open(bedfile,'r'): f = f.strip().split() chrom = f[0...
lmazuel/azure-sdk-for-python
azure-cognitiveservices-search-websearch/azure/cognitiveservices/search/websearch/models/web_page.py
# coding=utf-8 # -------------------------------------------------------------------------- # Copyright (c) Microsoft Corporation. All rights reserved. # Licensed under the MIT License. See License.txt in the project root for # license information. # # Code generated by Microsoft (R) AutoRest Code Generator. # Changes ...
jontyjashan/PiNN_Caffe2
pinn/exporter.py
import caffe2_paths import numpy as np from caffe2.python import workspace, core, model_helper, brew, optimizer, utils from caffe2.proto import caffe2_pb2 def load_net(INIT_NET, PREDICT_NET): init_def = caffe2_pb2.NetDef() with open(INIT_NET, 'r') as f: init_def.ParseFromString(f.read()) #init_def.devic...
jmluy/xpython
exercises/concept/ghost-gobble-arcade-game/.meta/exemplar.py
def eat_ghost(power_pellet_active, touching_ghost): """ :param power_pellet_active: bool - does the player have an active power pellet? :param touching_ghost: bool - is the player touching a ghost? :return: bool """ return power_pellet_active and touching_ghost def score(touching_power_pell...
PIVX-Project/PIVX
test/functional/rpc_spork.py
#!/usr/bin/env python3 # Copyright (c) 2019-2020 The PIVX developers # Distributed under the MIT software license, see the accompanying # file COPYING or http://www.opensource.org/licenses/mit-license.php. from time import sleep from test_framework.test_framework import PivxTestFramework from test_framework.util impo...
futureshocked/RaspberryPi-FullStack
env_log.py
#!/usr/bin/env python ''' FILE NAME env_log.py 1. WHAT IT DOES Takes a reading from a DHT sensor and records the values in an SQLite3 database using a Raspberry Pi. 2. REQUIRES * Any Raspberry Pi * A DHT sensor * A 10kOhm resistor * Jumper wires 3. ORIGINAL WORK Raspberry Full stack 2015, Peter Dalmaris 4. HARDW...
shl198/Pipeline
RibosomeProfilePipeline/04_Proteomaps.py
from __future__ import division import os import pandas as pd from natsort import natsorted from f02_RiboDataModule import * #=============================================================================== # 1. generate count data for day3 and day6 proteomaps #=================================...
Schevo/schevo
bootstrap.py
############################################################################## # # Copyright (c) 2006 Zope Corporation and Contributors. # All Rights Reserved. # # This software is subject to the provisions of the Zope Public License, # Version 2.1 (ZPL). A copy of the ZPL should accompany this distribution. # THIS SO...
dvro/UnbalancedDataset
imblearn/under_sampling/tests/test_cluster_centroids.py
"""Test the module cluster centroids.""" from __future__ import print_function import numpy as np from numpy.testing import assert_raises from numpy.testing import assert_equal from numpy.testing import assert_array_equal from numpy.testing import assert_array_almost_equal from numpy.testing import assert_warns from ...
michaelBenin/django-pipeline
setup.py
# -*- coding: utf-8 -*- from setuptools import setup, find_packages setup( name='django-pipeline', version='1.3.12', description='Pipeline is an asset packaging library for Django.', long_description=open('README.rst').read() + '\n\n' + open('HISTORY.rst').read(), author='Timothée Peignier...
datalogics/scons
test/Builder/multi/same-overrides.py
#!/usr/bin/env python # # __COPYRIGHT__ # # Permission is hereby granted, free of charge, to any person obtaining # a copy of this software and associated documentation files (the # "Software"), to deal in the Software without restriction, including # without limitation the rights to use, copy, modify, merge, publish, ...
anuragpapineni/Hearthbreaker-evolved-agent
neat-python-read-only/neat/chromosome.py
import random import math from .config import Config from . import genome # Temporary workaround - default settings #node_gene_type = genome.NodeGene conn_gene_type = genome.ConnectionGene class Chromosome(object): """ A chromosome for general recurrent neural networks. """ _id = 0 def __init__(self, pare...
bussiere/pypyjs
website/demo/home/rfk/repos/pypy/lib_pypy/pyrepl/reader.py
# Copyright 2000-2010 Michael Hudson-Doyle <micahel@gmail.com> # Antonio Cuni # Armin Rigo # # All Rights Reserved # # # Permission to use, copy, modify, and distribute this software and # its documentation for any purpose is hereby granted without fe...
JohnTroony/nikola
nikola/plugins/loghandler/stderr.py
# -*- coding: utf-8 -*- # Copyright © 2012-2015 Daniel Devine and others. # Permission is hereby granted, free of charge, to any # person obtaining a copy of this software and associated # documentation files (the "Software"), to deal in the # Software without restriction, including without limitation # the rights to...
pbanaszkiewicz/amy
amy/workshops/migrations/0190_auto_20190728_1118.py
# Generated by Django 2.1.7 on 2019-07-28 11:18 from django.db import migrations, models import django.db.models.deletion def new_mix_match_curriculum(apps, schema_editor): """Add new mix & match Curriculum entry.""" Curriculum = apps.get_model('workshops', 'Curriculum') Curriculum.objects.create( ...
filipeximenes/talk_testing_web_apis
awesomebikes/awesomebikes/urls.py
"""awesomebikes URL Configuration The `urlpatterns` list routes URLs to views. For more information please see: https://docs.djangoproject.com/en/1.9/topics/http/urls/ Examples: Function views 1. Add an import: from my_app import views 2. Add a URL to urlpatterns: url(r'^$', views.home, name='home') Clas...
sightmachine/LightGBM
examples/python-guide/advanced_example.py
# coding: utf-8 # pylint: disable = invalid-name, C0111 import lightgbm as lgb import pandas as pd import numpy as np # load or create your dataset print('Load data...') df_train = pd.read_csv('../binary_classification/binary.train', header=None, sep='\t') df_test = pd.read_csv('../binary_classification/binary.test', ...
diorcety/translate
translate/tools/podebug.py
# -*- coding: utf-8 -*- # # Copyright 2004-2006,2008-2010 Zuza Software Foundation # # This file is part of the Translate Toolkit. # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either versio...
FUB-HCC/neonion
accounts/tests.py
from django.test import TestCase from models import WorkingGroup, Membership from backends import EmailAuthBackend from accounts.models import User from django.core.urlresolvers import reverse from accounts import views def create_test_user(email='test@neonin.org'): if not WorkingGroup.objects.filter(name="Public...
SDSG-Invenio/invenio
invenio/modules/records/views.py
# -*- coding: utf-8 -*- # # This file is part of Invenio. # Copyright (C) 2012, 2013, 2014, 2015 CERN. # # Invenio is free software; you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation; either version 2 of the # License, or (at your...
dahaic/outerspace
server/lib/ige/SQLiteDatabase.py
# # Copyright 2001 - 2016 Ludek Smid [http://www.ospace.net/] # # This file is part of Outer Space. # # Outer Space is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (...
kohnle-lernmodule/palama
exe/webui/appletblock.py
# -- coding: utf-8 -- # =========================================================================== # eXe # Copyright 2004-2005, University of Auckland # Copyright 2004-2007 eXe Project http://eXeLearning.org/ # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU Gen...
AstroVPK/libcarma
tests/test_carma.py
import math import numpy as np import copy import unittest import random import psutil import sys import pdb import matplotlib.pyplot as plt import matplotlib.cm as colormap try: import kali.carma except ImportError: print 'Cannot import kali.carma! kali is not setup. Setup kali by sourcing bin/setup.sh' ...
blissland/blissflixx
lib/player/omxproc.py
import os, time, locations from processpipe import ExternalProcess, ProcessException OMX_CMD = "omxplayer --timeout 120 -I --no-keys " _DBUS_PATH = os.path.join(locations.BIN_PATH, "dbus.sh") _INPUT_TIMEOUT = 10 _START_TIMEOUT = 120 class OmxplayerProcess(ExternalProcess): def __init__(self): ExternalProcess._...
vrutkovs/gnome-music
gnomemusic/searchbar.py
# Copyright (c) 2013 Seif Lotfy <seif@lotfy.com> # Copyright (c) 2013 Vadim Rutkovsky <vrutkovs@redhat.com> # Copyright (c) 2014 Arnel A. Borja <kyoushuu@yahoo.com> # # GNOME Music is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free S...
hpcuantwerpen/easybuild-easyblocks
easybuild/easyblocks/i/imkl.py
# # # Copyright 2009-2021 Ghent University # # This file is part of EasyBuild, # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), # with support of Ghent University (http://ugent.be/hpc), # the Flemish Supercomputer Centre (VSC) (https://www.vscentrum.be), # Flemish Research Foundation (...