label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
|---|---|---|---|
0 | private String handleRequest(String url, boolean get) { HttpURLConnection c = null; InputStream is = null; ByteArrayInputStream bais; byte[] buf; String temp, ret = ""; int response, len, i; try { c = (HttpURLConnection) new URL(url).openConnection(); if (get) c.setRequestMethod("GET"); else c.setRequestMethod("HEAD"); response = c.getResponseCode(); if (get) { is = c.getInputStream(); len = (int) c.getContentLength(); if (len > 0) { byte[] data = new byte[len]; for (i = 0; i < len; i++) { data[i] = (byte) is.read(); } bytein += data.length; bais = new ByteArrayInputStream(data); while (bais.available() > 0) { buf = Utils.readLine(bais); if (buf != null) { temp = byteArrayToString(buf, encoding, utf8detect); inqueue.addElement(temp); } } } } if (is != null) is.close(); if (c != null) c.disconnect(); } catch (Exception e) { ret += "Request failed, continuing..."; return ret; } if (response != HttpStatus.SC_OK) { if (response != HttpStatus.SC_NOT_FOUND) { ret += "Error in connection to IRC server, aborting... "; ret += "Error: HTTP response code: " + response; } connected = false; return ret; } else return null; } | protected synchronized AbstractBaseObject insert(AbstractBaseObject obj) throws ApplicationException { PreparedStatement preStat = null; StringBuffer sqlStat = new StringBuffer(); DmsRelationalWord tmpDmsRelationalWord = (DmsRelationalWord) ((DmsRelationalWord) obj).clone(); synchronized (dbConn) { try { Integer nextID = getNextPrimaryID(); Timestamp currTime = Utility.getCurrentTimestamp(); sqlStat.append("INSERT "); sqlStat.append("INTO DMS_RELATIONAL_WORD(ID, RECORD_STATUS, UPDATE_COUNT, CREATOR_ID, CREATE_DATE, UPDATER_ID, UPDATE_DATE, WORD, PARENT_ID, TYPE) "); sqlStat.append("VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?) "); preStat = dbConn.prepareStatement(sqlStat.toString(), ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); setPrepareStatement(preStat, 1, nextID); setPrepareStatement(preStat, 2, tmpDmsRelationalWord.getRecordStatus()); setPrepareStatement(preStat, 3, new Integer(0)); setPrepareStatement(preStat, 4, tmpDmsRelationalWord.getCreatorID()); setPrepareStatement(preStat, 5, currTime); setPrepareStatement(preStat, 6, tmpDmsRelationalWord.getUpdaterID()); setPrepareStatement(preStat, 7, currTime); if (tmpDmsRelationalWord.getWord() == null || "".equals(tmpDmsRelationalWord.getWord().trim())) { return null; } setPrepareStatement(preStat, 8, tmpDmsRelationalWord.getWord()); setPrepareStatement(preStat, 9, tmpDmsRelationalWord.getParentID()); setPrepareStatement(preStat, 10, tmpDmsRelationalWord.getType()); preStat.executeUpdate(); tmpDmsRelationalWord.setID(nextID); tmpDmsRelationalWord.setCreatorID(tmpDmsRelationalWord.getCreatorID()); tmpDmsRelationalWord.setCreateDate(currTime); tmpDmsRelationalWord.setUpdaterID(tmpDmsRelationalWord.getUpdaterID()); tmpDmsRelationalWord.setUpdateDate(currTime); tmpDmsRelationalWord.setUpdateCount(new Integer(0)); tmpDmsRelationalWord.setCreatorName(UserInfoFactory.getUserFullName(tmpDmsRelationalWord.getCreatorID())); tmpDmsRelationalWord.setUpdaterName(UserInfoFactory.getUserFullName(tmpDmsRelationalWord.getUpdaterID())); dbConn.commit(); return (tmpDmsRelationalWord); } catch (Exception e) { try { dbConn.rollback(); } catch (Exception ee) { } log.error(e, e); throw new ApplicationException(ErrorConstant.DB_INSERT_ERROR, e); } finally { try { preStat.close(); } catch (Exception ignore) { } finally { preStat = null; } } } } | 14,700 |
1 | public void copyFile(File sourceFile, File destFile) throws IOException { Log.level3("Copying " + sourceFile.getPath() + " to " + destFile.getPath()); if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } } if (destination != null) { destination.close(); } } | private void foundNewVersion() { updater = new UpdaterView(); updater.setLabelText("Initiating Updater..."); updater.setProgress(0); updater.setLocationRelativeTo(null); updater.setVisible(true); URL pathUrl = ClassLoader.getSystemResource("img/icon.png"); String path = pathUrl.toString(); path = path.substring(4, path.length() - 14); try { file = new File(new URI(path)); updaterFile = new File(new URI(path.substring(0, path.length() - 4) + "Updater.jar")); if (updaterFile.exists()) { updaterFile.delete(); } updater.setProgress(25); SwingUtilities.invokeLater(new Runnable() { public void run() { try { FileChannel in = (new FileInputStream(file)).getChannel(); FileChannel out = (new FileOutputStream(updaterFile)).getChannel(); in.transferTo(0, file.length(), out); updater.setProgress(50); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } startUpdater(); } }); } catch (URISyntaxException e) { e.printStackTrace(); JOptionPane.showMessageDialog(null, "Update error! Could not create Updater. Check folder permission.", "Error", JOptionPane.ERROR_MESSAGE); } } | 14,701 |
1 | private void sort() { for (int i = 0; i < density.length; i++) { for (int j = density.length - 2; j >= i; j--) { if (density[j] > density[j + 1]) { KDNode n = nonEmptyNodesArray[j]; nonEmptyNodesArray[j] = nonEmptyNodesArray[j + 1]; nonEmptyNodesArray[j + 1] = n; double d = density[j]; density[j] = density[j + 1]; density[j + 1] = d; } } } } | public static int[] sortAscending(double input[]) { int[] order = new int[input.length]; for (int i = 0; i < order.length; i++) order[i] = i; for (int i = input.length; --i >= 0; ) { for (int j = 0; j < i; j++) { if (input[j] > input[j + 1]) { double mem = input[j]; input[j] = input[j + 1]; input[j + 1] = mem; int id = order[j]; order[j] = order[j + 1]; order[j + 1] = id; } } } return order; } | 14,702 |
0 | private static String getDocumentAt(String urlString) { StringBuffer html_text = new StringBuffer(); try { URL url = new URL(urlString); URLConnection conn = url.openConnection(); BufferedReader reader = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line = null; while ((line = reader.readLine()) != null) html_text.append(line + "\n"); reader.close(); } catch (MalformedURLException e) { System.out.println("����URL: " + urlString); } catch (IOException e) { e.printStackTrace(); } return html_text.toString(); } | private void sendData(HttpServletResponse response, MediaBean mediaBean) throws IOException { if (logger.isInfoEnabled()) logger.info("sendData[" + mediaBean + "]"); response.setContentLength(mediaBean.getContentLength()); response.setContentType(mediaBean.getContentType()); response.addHeader("Last-Modified", mediaBean.getLastMod()); response.addHeader("Cache-Control", "must-revalidate"); response.addHeader("content-disposition", "attachment, filename=" + (new Date()).getTime() + "_" + mediaBean.getFileName()); byte[] content = mediaBean.getContent(); InputStream is = null; OutputStream os = null; try { os = response.getOutputStream(); is = new ByteArrayInputStream(content); IOUtils.copy(is, os); } catch (IOException e) { logger.error(e, e); } finally { if (is != null) try { is.close(); } catch (IOException e) { } if (os != null) try { os.close(); } catch (IOException e) { } } } | 14,703 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void testBeAbleToDownloadAndUpload() throws IOException { OutputStream outputStream = fileSystem.createOutputStream(_("hello"), OutputMode.OVERWRITE); outputStream.write(new byte[] { 1, 2, 3 }); outputStream.close(); InputStream inputStream = fileSystem.createInputStream(_("hello")); ByteArrayOutputStream buffer = new ByteArrayOutputStream(); IOUtils.copy(inputStream, buffer); inputStream.close(); ensure.that(buffer.toByteArray()).eq(new byte[] { 1, 2, 3 }); } | 14,704 |
0 | @Override public TDSScene loadScene(URL url) throws IOException, IncorrectFormatException, ParsingErrorException { boolean baseURLWasNull = setBaseURLFromModelURL(url); TDSScene scene = loadScene(url.openStream()); if (baseURLWasNull) { popBaseURL(); } return (scene); } | private void saveFile(Folder folder, Object key, InputStream stream) throws FileManagerException { File file = new File(folder, key.toString()); LOGGER.debug("Writing file: " + file.getAbsolutePath()); Writer writer = null; Writer encodedWriter = null; try { encodedWriter = new OutputStreamWriter(new FileOutputStream(file), getEncodeCharset()); IOUtils.copy(stream, encodedWriter, getDecodeCharset()); LOGGER.info("saveFile(), decode charset: " + getDecodeCharset() + ", encode charset: " + getEncodeCharset()); } catch (IOException e) { throw new FileManagerException("Unable to write to file: " + file.getAbsolutePath(), e); } finally { try { encodedWriter.close(); } catch (IOException e) { throw new FileManagerException("Unable to write to file: " + file.getAbsolutePath(), e); } } } | 14,705 |
1 | private synchronized Frame addFrame(INSERT_TYPE type, File source) throws IOException { if (source == null) throw new NullPointerException("Parameter 'source' is null"); if (!source.exists()) throw new IOException("File does not exist: " + source.getAbsolutePath()); if (source.length() <= 0) throw new IOException("File is empty: " + source.getAbsolutePath()); File newLocation = new File(Settings.getPropertyString(ConstantKeys.project_dir), formatFileName(frames_.size())); if (newLocation.compareTo(source) != 0) { switch(type) { case MOVE: source.renameTo(newLocation); break; case COPY: FileChannel inChannel = new FileInputStream(source).getChannel(); FileChannel outChannel = new FileOutputStream(newLocation).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); break; } } Frame f = new Frame(newLocation); f.createThumbNail(); frames_.add(f); return f; } | private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } } | 14,706 |
1 | public static void unzipFile(File zipFile, File destFile, boolean removeSrcFile) throws Exception { ZipInputStream zipinputstream = new ZipInputStream(new FileInputStream(zipFile)); ZipEntry zipentry = zipinputstream.getNextEntry(); int BUFFER_SIZE = 4096; while (zipentry != null) { String entryName = zipentry.getName(); log.info("<<<<<< ZipUtility.unzipFile - Extracting: " + zipentry.getName()); File newFile = null; if (destFile.isDirectory()) newFile = new File(destFile, entryName); else newFile = destFile; if (zipentry.isDirectory() || entryName.endsWith(File.separator + ".")) { newFile.mkdirs(); } else { ByteBuffer buffer = ByteBuffer.allocate(BUFFER_SIZE); byte[] bufferArray = buffer.array(); FileUtilities.createDirectory(newFile.getParentFile()); FileChannel destinationChannel = new FileOutputStream(newFile).getChannel(); while (true) { buffer.clear(); int lim = zipinputstream.read(bufferArray); if (lim == -1) break; buffer.flip(); buffer.limit(lim); destinationChannel.write(buffer); } destinationChannel.close(); zipinputstream.closeEntry(); } zipentry = zipinputstream.getNextEntry(); } zipinputstream.close(); if (removeSrcFile) { if (zipFile.exists()) zipFile.delete(); } } | public void save(File f, AudioFileFormat.Type t) throws IOException { if (t.getExtension().equals("raw")) { IOUtils.copy(makeInputStream(), new FileOutputStream(f)); } else { AudioSystem.write(makeStream(), t, f); } } | 14,707 |
1 | public void zipUp() throws PersistenceException { ZipOutputStream out = null; try { if (!backup.exists()) backup.createNewFile(); out = new ZipOutputStream(new FileOutputStream(backup)); out.setLevel(Deflater.DEFAULT_COMPRESSION); for (String file : backupDirectory.list()) { logger.debug("Deflating: " + file); FileInputStream in = null; try { in = new FileInputStream(new File(backupDirectory, file)); out.putNextEntry(new ZipEntry(file)); IOUtils.copy(in, out); } finally { out.closeEntry(); if (null != in) in.close(); } } FileUtils.deleteDirectory(backupDirectory); } catch (Exception ex) { logger.error("Unable to ZIP the backup {" + backupDirectory.getAbsolutePath() + "}.", ex); throw new PersistenceException(ex); } finally { try { if (null != out) out.close(); } catch (IOException e) { logger.error("Unable to close ZIP output stream.", e); } } } | String extractTiffFile(String path) throws IOException { ZipInputStream in = new ZipInputStream(new FileInputStream(path)); OutputStream out = new FileOutputStream(dir + TEMP_NAME); byte[] buf = new byte[1024]; int len; ZipEntry entry = in.getNextEntry(); if (entry == null) return null; String name = entry.getName(); if (!name.endsWith(".tif")) throw new IOException("This ZIP archive does not appear to contain a TIFF file"); while ((len = in.read(buf)) > 0) out.write(buf, 0, len); out.close(); in.close(); return name; } | 14,708 |
0 | public static String rename_file(String sessionid, String key, String newFileName) { String jsonstring = ""; try { Log.d("current running function name:", "rename_file"); HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost("https://mt0-app.cloud.cm/rpc/json"); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(2); nameValuePairs.add(new BasicNameValuePair("c", "Storage")); nameValuePairs.add(new BasicNameValuePair("m", "rename_file")); nameValuePairs.add(new BasicNameValuePair("new_name", newFileName)); nameValuePairs.add(new BasicNameValuePair("key", key)); httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); httppost.setHeader("Cookie", "PHPSESSID=" + sessionid); HttpResponse response = httpclient.execute(httppost); jsonstring = EntityUtils.toString(response.getEntity()); Log.d("jsonStringReturned:", jsonstring); return jsonstring; } catch (Exception e) { e.printStackTrace(); } return jsonstring; } | public static boolean cpy(File a, File b) { try { FileInputStream astream = null; FileOutputStream bstream = null; try { astream = new FileInputStream(a); bstream = new FileOutputStream(b); long flength = a.length(); int bufsize = (int) Math.min(flength, 1024); byte buf[] = new byte[bufsize]; long n = 0; while (n < flength) { int naread = astream.read(buf); bstream.write(buf, 0, naread); n += naread; } } finally { if (astream != null) astream.close(); if (bstream != null) bstream.close(); } } catch (IOException e) { e.printStackTrace(); return false; } return true; } | 14,709 |
0 | private URLConnection openConnection(final URL url) throws IOException { try { return (URLConnection) AccessController.doPrivileged(new PrivilegedExceptionAction() { public Object run() throws IOException { return url.openConnection(); } }); } catch (PrivilegedActionException e) { throw (IOException) e.getException(); } } | protected void zipFile(File from, File to) throws IOException { FileInputStream in = new FileInputStream(from); ZipOutputStream out = new ZipOutputStream(new FileOutputStream(to)); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = in.read(buffer)) != -1) out.write(buffer, 0, bytes_read); in.close(); out.close(); } | 14,710 |
0 | public void echo(HttpRequest request, HttpResponse response) throws IOException { InputStream in = request.getInputStream(); if ("gzip".equals(request.getField("Content-Encoding"))) { in = new GZIPInputStream(in); } IOUtils.copy(in, response.getOutputStream()); } | protected final Properties getResourceProperties(Long id, String baseURL) { try { URL url = getClass().getResource(baseURL + id + ".properties"); if (url == null) { url = new URL(baseURL + id + ".properties"); } Properties props = new Properties(); InputStream is = url.openStream(); props.load(is); is.close(); return props; } catch (IOException e) { e.printStackTrace(); return null; } } | 14,711 |
1 | public static void copyFile(File file, String destDir) throws IOException { if (!isCanReadFile(file)) throw new RuntimeException("The File can't read:" + file.getPath()); if (!isCanWriteDirectory(destDir)) throw new RuntimeException("The Directory can't write:" + destDir); FileChannel srcChannel = null; FileChannel dstChannel = null; try { srcChannel = new FileInputStream(file).getChannel(); dstChannel = new FileOutputStream(destDir + "/" + file.getName()).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); } catch (IOException e) { throw e; } finally { if (srcChannel != null) try { srcChannel.close(); } catch (IOException e) { } if (dstChannel != null) try { dstChannel.close(); } catch (IOException e) { } } } | public void gzip(File from, File to) { OutputStream out_zip = null; ArchiveOutputStream os = null; try { try { out_zip = new FileOutputStream(to); os = new ArchiveStreamFactory().createArchiveOutputStream("zip", out_zip); os.putArchiveEntry(new ZipArchiveEntry(from.getName())); IOUtils.copy(new FileInputStream(from), os); os.closeArchiveEntry(); } finally { if (os != null) { os.close(); } } out_zip.close(); } catch (IOException ex) { fatal("IOException", ex); } catch (ArchiveException ex) { fatal("ArchiveException", ex); } } | 14,712 |
0 | public Dbf(URL url) throws java.io.IOException, DbfFileException { if (DEBUG) System.out.println("---->uk.ac.leeds.ccg.dbffile.Dbf constructed. Will identify itself as " + DBC); URLConnection uc = url.openConnection(); InputStream in = uc.getInputStream(); EndianDataInputStream sfile = new EndianDataInputStream(in); init(sfile); } | @Nullable public LSInput resolveResource(String type, String namespaceURI, String publicId, String systemId, String baseURI) { if (logger.isLoggable(Level.FINE)) { logger.fine("Try to resolve the resource with the public ID: " + publicId + ", system ID: " + systemId + " and baseURI " + baseURI + "."); } InputSource inputSource = null; try { inputSource = resolveIntern(publicId, systemId); } catch (IOException e) { logger.log(Level.SEVERE, "", e); } if (inputSource != null) { return new LSInputSAXWrapper(inputSource); } if (baseURI != null) { String resolved = baseURI.substring(0, baseURI.lastIndexOf('/') + 1) + systemId; try { URL url = new URL(resolved); url.openConnection().connect(); if (logger.isLoggable(Level.FINE)) { logger.fine("Resolve with help of baseURI to: " + resolved); } inputSource = new InputSource(resolved); return new LSInputSAXWrapper(inputSource); } catch (MalformedURLException e) { } catch (IOException e) { } } if (logger.isLoggable(Level.WARNING)) { logger.warning("Failed to resolve the resource with the public ID: " + publicId + ", system ID: " + systemId + " and baseURI " + baseURI + "."); } return null; } | 14,713 |
0 | public static String toMD5String(String plainText) { if (TextUtils.isEmpty(plainText)) { plainText = ""; } StringBuilder text = new StringBuilder(); for (int i = plainText.length() - 1; i >= 0; i--) { text.append(plainText.charAt(i)); } plainText = text.toString(); MessageDigest mDigest; try { mDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return plainText; } mDigest.update(plainText.getBytes()); byte d[] = mDigest.digest(); StringBuffer hash = new StringBuffer(); for (int i = 0; i < d.length; i++) { hash.append(Integer.toHexString(0xFF & d[i])); } return hash.toString(); } | private String transferWSDL(String wsdlURL, String userPassword) throws WiseConnectionException { String filePath = null; try { URL endpoint = new URL(wsdlURL); HttpURLConnection conn = (HttpURLConnection) endpoint.openConnection(); conn.setDoOutput(false); conn.setDoInput(true); conn.setUseCaches(false); conn.setRequestMethod("GET"); conn.setRequestProperty("Accept", "text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"); conn.setRequestProperty("Connection", "close"); if (userPassword != null) { conn.setRequestProperty("Authorization", "Basic " + (new BASE64Encoder()).encode(userPassword.getBytes())); } InputStream is = null; if (conn.getResponseCode() == 200) { is = conn.getInputStream(); } else { is = conn.getErrorStream(); InputStreamReader isr = new InputStreamReader(is); StringWriter sw = new StringWriter(); char[] buf = new char[200]; int read = 0; while (read != -1) { read = isr.read(buf); sw.write(buf); } throw new WiseConnectionException("Remote server's response is an error: " + sw.toString()); } File file = new File(tmpDeployDir, new StringBuffer("Wise").append(IDGenerator.nextVal()).append(".xml").toString()); OutputStream fos = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copyStream(fos, is); fos.close(); is.close(); filePath = file.getPath(); } catch (WiseConnectionException wce) { throw wce; } catch (Exception e) { throw new WiseConnectionException("Wsdl download failed!", e); } return filePath; } | 14,714 |
0 | public static void zip() throws Exception { System.out.println("zip()"); ZipOutputStream zipout = new ZipOutputStream(new FileOutputStream(new File("/zip/myzip.zip"))); ZipEntry entry = new ZipEntry("asdf.script"); zipout.putNextEntry(entry); byte buffer[] = new byte[BLOCKSIZE]; FileInputStream in = new FileInputStream(new File("/zip/asdf.script")); for (int length; (length = in.read(buffer, 0, BLOCKSIZE)) != -1; ) zipout.write(buffer, 0, length); in.close(); zipout.closeEntry(); zipout.close(); } | public DataSet guessAtUnknowns(String filename) { TasselFileType guess = TasselFileType.Sequence; DataSet tds = null; try { BufferedReader br = null; if (filename.startsWith("http")) { URL url = new URL(filename); br = new BufferedReader(new InputStreamReader(url.openStream())); } else { br = new BufferedReader(new FileReader(filename)); } String line1 = br.readLine().trim(); String[] sval1 = line1.split("\\s"); String line2 = br.readLine().trim(); String[] sval2 = line2.split("\\s"); boolean lociMatchNumber = false; if (!sval1[0].startsWith("<") && (sval1.length == 2) && (line1.indexOf(':') < 0)) { int countLoci = Integer.parseInt(sval1[1]); if (countLoci == sval2.length) { lociMatchNumber = true; } } if (sval1[0].equalsIgnoreCase("<Annotated>")) { guess = TasselFileType.Annotated; } else if (line1.startsWith("<") || line1.startsWith("#")) { boolean isTrait = false; boolean isMarker = false; boolean isNumeric = false; boolean isMap = false; Pattern tagPattern = Pattern.compile("[<>\\s]+"); String[] info1 = tagPattern.split(line1); String[] info2 = tagPattern.split(line2); if (info1.length > 1) { if (info1[1].toUpperCase().startsWith("MARKER")) { isMarker = true; } else if (info1[1].toUpperCase().startsWith("TRAIT")) { isTrait = true; } else if (info1[1].toUpperCase().startsWith("NUMER")) { isNumeric = true; } else if (info1[1].toUpperCase().startsWith("MAP")) { isMap = true; } } if (info2.length > 1) { if (info2[1].toUpperCase().startsWith("MARKER")) { isMarker = true; } else if (info2[1].toUpperCase().startsWith("TRAIT")) { isTrait = true; } else if (info2[1].toUpperCase().startsWith("NUMER")) { isNumeric = true; } else if (info2[1].toUpperCase().startsWith("MAP")) { isMap = true; } } else { guess = null; String inline = br.readLine(); while (guess == null && inline != null && (inline.startsWith("#") || inline.startsWith("<"))) { if (inline.startsWith("<")) { String[] info = tagPattern.split(inline); if (info[1].toUpperCase().startsWith("MARKER")) { isMarker = true; } else if (info[1].toUpperCase().startsWith("TRAIT")) { isTrait = true; } else if (info[1].toUpperCase().startsWith("NUMER")) { isNumeric = true; } else if (info[1].toUpperCase().startsWith("MAP")) { isMap = true; } } } } if (isTrait || (isMarker && isNumeric)) { guess = TasselFileType.Phenotype; } else if (isMarker) { guess = TasselFileType.Polymorphism; } else if (isMap) { guess = TasselFileType.GeneticMap; } else { throw new IOException("Improperly formatted header. Data will not be imported."); } } else if ((line1.startsWith(">")) || (line1.startsWith(";"))) { guess = TasselFileType.Fasta; } else if (sval1.length == 1) { guess = TasselFileType.SqrMatrix; } else if (line1.indexOf(':') > 0) { guess = TasselFileType.Polymorphism; } else if ((sval1.length == 2) && (lociMatchNumber)) { guess = TasselFileType.Polymorphism; } else if ((line1.startsWith("#Nexus")) || (line1.startsWith("#NEXUS")) || (line1.startsWith("CLUSTAL")) || ((sval1.length == 2) && (sval2.length == 2))) { guess = TasselFileType.Sequence; } else if (sval1.length == 3) { guess = TasselFileType.Numerical; } myLogger.info("guessAtUnknowns: type: " + guess); tds = processDatum(filename, guess); br.close(); } catch (Exception e) { } return tds; } | 14,715 |
1 | public static String hashString(String sPassword) { if (sPassword == null || sPassword.equals("")) { return "empty:"; } else { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(sPassword.getBytes("UTF-8")); byte[] res = md.digest(); return "sha1:" + StringUtils.byte2hex(res); } catch (NoSuchAlgorithmException e) { return "plain:" + sPassword; } catch (UnsupportedEncodingException e) { return "plain:" + sPassword; } } } | public String md5Encode(String pass) { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } md.update(pass.getBytes()); byte[] result = md.digest(); return new String(result); } | 14,716 |
0 | public static final void newRead() { HTMLDocument html = new HTMLDocument(); html.putProperty("IgnoreCharsetDirective", new Boolean(true)); try { HTMLEditorKit kit = new HTMLEditorKit(); URL url = new URL("http://omega.rtu.lv/en/index.html"); kit.read(new BufferedReader(new InputStreamReader(url.openStream())), html, 0); Reader reader = new FileReader(html.getText(0, html.getLength())); List<String> links = HTMLUtils.extractLinks(reader); } catch (Exception e) { e.printStackTrace(); } } | protected void onSubmit() { super.onSubmit(); if (!this.hasError()) { final FileUpload upload = fileUploadField.getFileUpload(); if (upload != null) { try { StringWriter xmlSourceWriter = new StringWriter(); IOUtils.copy(upload.getInputStream(), xmlSourceWriter); processSubmittedDoap(xmlSourceWriter.toString()); } catch (IOException e) { setResponsePage(new ErrorReportPage(new UserReportableException("Unable to add doap using RDF supplied", DoapFormPage.class, e))); } } } } | 14,717 |
0 | public void run() { try { IOUtils.copy(is, os); os.flush(); } catch (IOException ioe) { logger.error("Unable to copy", ioe); } finally { IOUtils.closeQuietly(is); IOUtils.closeQuietly(os); } } | private void load(Runestone stone) throws RunesExceptionRuneExecution, RunesExceptionNoSuchContent { final Tokeniser tokeniser = stone.<Tokeniser>getContent("tokeniser").iterator().next(); rules = new HashMap<Node, List<GazRule>>(); System.out.println("Loading Gaz from: " + _url); if (_url == null) return; BufferedReader typesIn = null, entryIn = null; try { typesIn = new BufferedReader(new InputStreamReader(_url.openStream())); String tData = typesIn.readLine(); while (tData != null) { Map<String, Map> gaz = new HashMap<String, Map>(); String[] data = tData.split(":"); URL listURL = new URL(_url, data[0]); System.err.println("Loading from " + listURL); entryIn = new BufferedReader(new InputStreamReader(listURL.openStream())); String entry = entryIn.readLine(); while (entry != null) { entry = entry.trim(); if (!entry.equals("")) { final List<Token> tokens; try { tokens = tokeniser.tokenise(entry); } catch (IOException e) { throw new RunesExceptionRuneExecution(e, this); } Map<String, Map> m = gaz; for (Token t : tokens) { String token = t.getString(); if (_case_insensitive_gazetteer) token = token.toLowerCase(); @SuppressWarnings("unchecked") Map<String, Map> next = m.get(token); if (next == null) next = new HashMap<String, Map>(); m.put(token, next); m = next; } m.put(STOP, null); } entry = entryIn.readLine(); } for (Map.Entry<String, Map> er : gaz.entrySet()) { NodeAbstract start = new NodeStringImpl(TOKEN_TYPE, null); if (_case_insensitive_gazetteer) { start.addFeature(TOKEN_HAS_STRING, new NodeRegExpImpl(TOKEN_STRING, "(?i:" + er.getKey().toLowerCase() + ")")); } else { start.addFeature(TOKEN_HAS_STRING, new NodeStringImpl(TOKEN_STRING, er.getKey())); } @SuppressWarnings("unchecked") Transition transition = mapToTransition(er.getValue()); String major = data[1]; String minor = (data.length == 3 ? data[2] : null); GazRule gr = new GazRule(major, minor, transition); List<GazRule> rl = rules.get(start); if (rl == null) rl = new ArrayList<GazRule>(); rl.add(gr); rules.put(start, rl); } entryIn.close(); System.err.println(rules.size()); tData = typesIn.readLine(); } } catch (IOException e) { throw new RunesExceptionRuneExecution(e, this); } finally { try { if (typesIn != null) typesIn.close(); } catch (IOException e) { } try { if (entryIn != null) entryIn.close(); } catch (IOException e) { } } } | 14,718 |
1 | private void prepareQueryResultData(ZipEntryRef zer, String nodeDir, String reportDir, Set<ZipEntryRef> statusZers) throws Exception { String jobDir = nodeDir + File.separator + "job_" + zer.getUri(); if (!WorkDirectory.isWorkingDirectoryValid(jobDir)) { throw new Exception("Cannot acces to " + jobDir); } File f = new File(jobDir + File.separator + "result.xml"); if (!f.exists() || !f.isFile() || !f.canRead()) { throw new Exception("Cannot acces to result file " + f.getAbsolutePath()); } String fcopyName = reportDir + File.separator + zer.getName() + ".xml"; BufferedInputStream bis = new BufferedInputStream(new FileInputStream(f)); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(fcopyName)); IOUtils.copy(bis, bos); bis.close(); bos.close(); zer.setUri(fcopyName); f = new File(jobDir + File.separator + "status.xml"); if (!f.exists() || !f.isFile() || !f.canRead()) { throw new Exception("Cannot acces to status file " + f.getAbsolutePath()); } fcopyName = reportDir + File.separator + zer.getName() + "_status.xml"; bis = new BufferedInputStream(new FileInputStream(f)); bos = new BufferedOutputStream(new FileOutputStream(fcopyName)); IOUtils.copy(bis, bos); bis.close(); bos.close(); statusZers.add(new ZipEntryRef(ZipEntryRef.SINGLE_FILE, zer.getName(), fcopyName, ZipEntryRef.WITH_REL)); } | private void insertContent(ImageData imageData, Element element) { URL url = getClass().getResource(imageData.getURL()); try { File imageFileRead = new File(url.toURI()); FileInputStream inputStream = new FileInputStream(imageFileRead); String imageFileWritePath = "htmlReportFiles" + "/" + imageData.getURL(); File imageFileWrite = new File(imageFileWritePath); String[] filePathTokens = imageFileWritePath.split("/"); String directoryPathCreate = filePathTokens[0]; int i = 1; while (i < filePathTokens.length - 1) { directoryPathCreate = directoryPathCreate + "/" + filePathTokens[i]; i++; } File fileDirectoryPathCreate = new File(directoryPathCreate); if (!fileDirectoryPathCreate.exists()) { boolean successfulFileCreation = fileDirectoryPathCreate.mkdirs(); if (successfulFileCreation == false) { throw new ExplanationException("Unable to create folders in path " + directoryPathCreate); } } FileOutputStream fileOutputStream = new FileOutputStream(imageFileWrite); byte[] data = new byte[1024]; int readDataNumberOfBytes = 0; while (readDataNumberOfBytes != -1) { readDataNumberOfBytes = inputStream.read(data, 0, data.length); if (readDataNumberOfBytes != -1) { fileOutputStream.write(data, 0, readDataNumberOfBytes); } } inputStream.close(); fileOutputStream.close(); } catch (Exception ex) { throw new ExplanationException(ex.getMessage()); } String caption = imageData.getCaption(); Element imageElement = element.addElement("img"); if (imageData.getURL().charAt(0) != '/') imageElement.addAttribute("src", "htmlReportFiles" + "/" + imageData.getURL()); else imageElement.addAttribute("src", "htmlReportFiles" + imageData.getURL()); imageElement.addAttribute("alt", "image not available"); if (caption != null) { element.addElement("br"); element.addText(caption); } } | 14,719 |
0 | public List<Mosque> getAllMosquaisFromDataBase() { List<Mosque> mosquais = new ArrayList<Mosque>(); InputStream is = null; String result = ""; ArrayList<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(); if (MyMapActivity.DEVELOPER_MODE) { nameValuePairs.add(new BasicNameValuePair(Param.LATITUDE, MyMapActivity.mLatitude + "")); nameValuePairs.add(new BasicNameValuePair(Param.LONGITUDE, MyMapActivity.mLongitude + "")); } else { nameValuePairs.add(new BasicNameValuePair(Param.LATITUDE, MyMapActivity.myLocation.getLatitude() + "")); nameValuePairs.add(new BasicNameValuePair(Param.LONGITUDE, MyMapActivity.myLocation.getLongitude() + "")); } nameValuePairs.add(new BasicNameValuePair(Param.RAYON, DataBaseQuery.rayon * Param.KM_MARGE + "")); try { HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost(Param.URI_SELECT_ALL_DATA_BASE); httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); HttpResponse response = httpclient.execute(httppost); HttpEntity entity = response.getEntity(); is = entity.getContent(); } catch (Exception e) { Log.e("log_tag", "Error in http connection " + e.toString()); } try { BufferedReader reader = new BufferedReader(new InputStreamReader(is, "iso-8859-1"), 8); StringBuilder sb = new StringBuilder(); String line = null; while ((line = reader.readLine()) != null) { sb.append(line + "\n"); } is.close(); result = sb.toString(); } catch (Exception e) { Log.e("log_tag", "Error converting result " + e.toString()); } try { JSONArray jArray = new JSONArray(result); for (int i = 0; i < jArray.length(); i++) { JSONObject json_data = jArray.getJSONObject(i); Mosque mosquai = new Mosque(json_data.getInt(Param.ID), json_data.getString(Param.NOM), json_data.getDouble(Param.LATITUDE), json_data.getDouble(Param.LONGITUDE), json_data.getString(Param.INFO), json_data.getInt(Param.HAVE_PICTURE) == 1 ? true : false, json_data.getString(Param.PICTURE)); mosquais.add(mosquai); } } catch (JSONException e) { Log.e("log_tag", "Error parsing data " + e.toString()); } return mosquais; } | public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); if (to_file.exists()) { if (!to_file.canWrite()) abort("FileCopy: destination file is unwriteable: " + to_name); System.out.print("Overwrite existing file " + to_name + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) abort("FileCopy: existing file was not overwritten."); } else { String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 14,720 |
0 | public AudioFileFormat getAudioFileFormat(URL url) throws UnsupportedAudioFileException, IOException { if (TDebug.TraceAudioFileReader) { TDebug.out("TAudioFileReader.getAudioFileFormat(URL): begin"); } long lFileLengthInBytes = AudioSystem.NOT_SPECIFIED; InputStream inputStream = url.openStream(); AudioFileFormat audioFileFormat = null; try { audioFileFormat = getAudioFileFormat(inputStream, lFileLengthInBytes); } finally { inputStream.close(); } if (TDebug.TraceAudioFileReader) { TDebug.out("TAudioFileReader.getAudioFileFormat(URL): end"); } return audioFileFormat; } | public static void copyFile(File source, File destination) throws IOException { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(destination).getChannel(); long size = in.size(); MappedByteBuffer buffer = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buffer); } finally { if (in != null) { in.close(); } if (out != null) { out.close(); } } } | 14,721 |
0 | private void copyThemeProviderClass() throws Exception { InputStream is = getClass().getResourceAsStream("/zkthemer/ThemeProvider.class"); if (is == null) throw new RuntimeException("Cannot find ThemeProvider.class"); File outFile = new File(theme.getJarRootFile(), "zkthemer/ThemeProvider.class"); outFile.getParentFile().mkdirs(); FileOutputStream out = new FileOutputStream(outFile); IOUtils.copy(is, out); out.close(); FileUtils.writeStringToFile(new File(theme.getJarRootFile(), "zkthemer.properties"), "theme=" + theme.getName() + "\r\nfileList=" + fileList.deleteCharAt(fileList.length() - 1).toString()); } | public boolean validateLogin(String username, String password) { boolean user_exists = false; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(password.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); String password_hash = hash.toString(16); statement = connect.prepareStatement("SELECT id from toepen.users WHERE username = ? AND password = ?"); statement.setString(1, username); statement.setString(2, password_hash); resultSet = statement.executeQuery(); while (resultSet.next()) { user_exists = true; } } catch (Exception ex) { System.out.println(ex); } finally { close(); return user_exists; } } | 14,722 |
0 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public static int[] rank(double[] data) { int[] rank = new int[data.length]; for (int i = 0; i < data.length; i++) rank[i] = i; boolean swapped; double dtmp; int i, j, itmp; for (i = 0; i < data.length - 1; i++) { swapped = false; for (j = 0; j < data.length - 1 - i; j++) { if (data[j] < data[j + 1]) { dtmp = data[j]; data[j] = data[j + 1]; data[j + 1] = dtmp; itmp = rank[j]; rank[j] = rank[j + 1]; rank[j + 1] = itmp; swapped = true; } } } return rank; } | 14,723 |
1 | public static void main(String[] args) throws IOException { if (args.length == 0) { System.out.println("Usage: \nGZIPcompress file\n" + "\tUses GZIP compression to compress " + "the file to test.gz"); System.exit(1); } BufferedReader in = new BufferedReader(new FileReader(args[0])); BufferedOutputStream out = new BufferedOutputStream(new GZIPOutputStream(new FileOutputStream("test.gz"))); System.out.println("Writing file"); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); System.out.println("Reading file"); BufferedReader in2 = new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream("test.gz")))); String s; while ((s = in2.readLine()) != null) System.out.println(s); } | public void notifyTerminated(Writer r) { all_writers.remove(r); if (all_writers.isEmpty()) { all_terminated = true; Iterator iterator = open_files.iterator(); while (iterator.hasNext()) { FileWriter.FileChunk fc = (FileWriter.FileChunk) iterator.next(); do { try { fc.stream.flush(); fc.stream.close(); } catch (IOException e) { } fc = fc.next; } while (fc != null); } iterator = open_files.iterator(); boolean all_ok = true; while (iterator.hasNext()) { FileWriter.FileChunk fc = (FileWriter.FileChunk) iterator.next(); logger.logComment("File chunk <" + fc.name + "> " + fc.start_byte + " " + fc.position + " " + fc.actual_file); boolean ok = true; while (fc.next != null) { ok = ok && (fc.start_byte + fc.actual_file.length()) == fc.next.start_byte; fc = fc.next; } if (ok) { logger.logComment("Received file <" + fc.name + "> is contiguous (and hopefully complete)"); } else { logger.logError("Received file <" + fc.name + "> is NOT contiguous"); all_ok = false; } } if (all_ok) { byte[] buffer = new byte[16384]; iterator = open_files.iterator(); while (iterator.hasNext()) { FileWriter.FileChunk fc = (FileWriter.FileChunk) iterator.next(); try { if (fc.next != null) { FileOutputStream fos = new FileOutputStream(fc.actual_file, true); fc = fc.next; while (fc != null) { FileInputStream fis = new FileInputStream(fc.actual_file); int actually_read = fis.read(buffer); while (actually_read != -1) { fos.write(buffer, 0, actually_read); actually_read = fis.read(buffer); } fc.actual_file.delete(); fc = fc.next; } } } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } } fte.allWritersTerminated(); fte = null; } } | 14,724 |
1 | public static final synchronized String md5(final String data) { try { final MessageDigest md = MessageDigest.getInstance("MD5"); md.update(data.getBytes()); final byte[] b = md.digest(); return toHexString(b); } catch (final Exception e) { } return ""; } | public static String getEncryptedPwd(String password) throws NoSuchAlgorithmException, UnsupportedEncodingException { byte[] pwd = null; SecureRandom random = new SecureRandom(); byte[] salt = new byte[SALT_LENGTH]; random.nextBytes(salt); MessageDigest md = null; md = MessageDigest.getInstance("MD5"); md.update(salt); md.update(password.getBytes("UTF-8")); byte[] digest = md.digest(); pwd = new byte[digest.length + SALT_LENGTH]; System.arraycopy(salt, 0, pwd, 0, SALT_LENGTH); System.arraycopy(digest, 0, pwd, SALT_LENGTH, digest.length); return byteToHexString(pwd); } | 14,725 |
1 | public void addUserToRealm(final NewUser user) { try { connection.setAutoCommit(false); final String pass, salt; final List<RealmWithEncryptedPass> realmPass = new ArrayList<RealmWithEncryptedPass>(); Realm realm; String username; username = user.username.toLowerCase(locale); PasswordHasher ph = PasswordFactory.getInstance().getPasswordHasher(); pass = ph.hashPassword(user.password); salt = ph.getSalt(); realmPass.add(new RealmWithEncryptedPass(cm.getRealm("null"), PasswordFactory.getInstance().getPasswordHasher().hashRealmPassword(username, "", user.password))); if (user.realms != null) { for (String realmName : user.realms) { realm = cm.getRealm(realmName); realmPass.add(new RealmWithEncryptedPass(realm, PasswordFactory.getInstance().getPasswordHasher().hashRealmPassword(username, realm.getFullRealmName(), user.password))); } user.realms = null; } new ProcessEnvelope().executeNull(new ExecuteProcessAbstractImpl(connection, false, false, true, true) { @Override public void executeProcessReturnNull() throws SQLException { psImpl = connImpl.prepareStatement(sqlCommands.getProperty("user.updatePassword")); psImpl.setString(1, pass); psImpl.setString(2, salt); psImpl.setInt(3, user.userId); psImpl.executeUpdate(); } }); new ProcessEnvelope().executeNull(new ExecuteProcessAbstractImpl(connection, false, false, true, true) { @Override public void executeProcessReturnNull() throws SQLException { psImpl = connImpl.prepareStatement(sqlCommands.getProperty("realm.addUser")); RealmWithEncryptedPass rwep; RealmDb realm; Iterator<RealmWithEncryptedPass> iter1 = realmPass.iterator(); while (iter1.hasNext()) { rwep = iter1.next(); realm = (RealmDb) rwep.realm; psImpl.setInt(1, realm.getRealmId()); psImpl.setInt(2, user.userId); psImpl.setInt(3, user.domainId); psImpl.setString(4, rwep.password); psImpl.executeUpdate(); } } }); connection.commit(); cmDB.removeUser(user.userId); } catch (GeneralSecurityException e) { log.error(e); if (connection != null) { try { connection.rollback(); } catch (SQLException ex) { } } throw new RuntimeException("Error updating Realms. Unable to continue Operation."); } catch (SQLException sqle) { log.error(sqle); if (connection != null) { try { connection.rollback(); } catch (SQLException ex) { } } } finally { if (connection != null) { try { connection.setAutoCommit(true); } catch (SQLException ex) { } } } } | public int updatewuliao(Addwuliao aw) { int flag = 0; Connection conn = null; PreparedStatement pm = null; try { conn = Pool.getConnection(); conn.setAutoCommit(false); pm = conn.prepareStatement("update addwuliao set inname=?,innum=?,inprice=?,productsdetail=?where pid=?"); pm.setString(1, aw.getInname()); pm.setInt(2, aw.getInnum()); pm.setDouble(3, aw.getInprice()); pm.setString(4, aw.getProductsdetail()); pm.setString(5, aw.getPid()); flag = pm.executeUpdate(); conn.commit(); Pool.close(pm); Pool.close(conn); } catch (Exception e) { e.printStackTrace(); try { conn.rollback(); } catch (Exception ep) { ep.printStackTrace(); } Pool.close(pm); Pool.close(conn); } finally { Pool.close(pm); Pool.close(conn); } return flag; } | 14,726 |
1 | public void convert(File file, String fromEncoding, String toEncoding) throws IOException { InputStream in = new FileInputStream(file); StringWriter cache = new StringWriter(); Reader reader = new InputStreamReader(in, fromEncoding); char[] buffer = new char[128]; int read; while ((read = reader.read(buffer)) > -1) { cache.write(buffer, 0, read); } reader.close(); in.close(); Log.warn(this, "read from file " + file + " (" + fromEncoding + "):" + cache); OutputStream out = new FileOutputStream(file); OutputStreamWriter writer = new OutputStreamWriter(out, toEncoding); writer.write(cache.toString()); cache.close(); writer.close(); out.close(); } | private FileInputStream getPackageStream(String archivePath) throws IOException, PackageManagerException { final int lastSlashInName = filename.lastIndexOf("/"); final String newFileName = filename.substring(lastSlashInName); File packageFile = new File((new StringBuilder()).append(archivePath).append(newFileName).toString()); if (null != packageFile) return new FileInputStream(packageFile); if (null != packageURL) { final InputStream urlStream = new ConnectToServer(null).getInputStream(packageURL); packageFile = new File((new StringBuilder()).append(getName()).append(".deb").toString()); final OutputStream fileStream = new FileOutputStream(packageFile); final byte buffer[] = new byte[10240]; for (int read = 0; (read = urlStream.read(buffer)) > 0; ) fileStream.write(buffer, 0, read); urlStream.close(); fileStream.close(); return new FileInputStream(packageFile); } else { final String errorMessage = PreferenceStoreHolder.getPreferenceStoreByName("Screen").getPreferenceAsString("package.getPackageStream.packageURLIsNull", "No entry found for package.getPackageStream.packageURLIsNull"); if (pm != null) { pm.addWarning(errorMessage); logger.error(errorMessage); } else logger.error(errorMessage); throw new FileNotFoundException(); } } | 14,727 |
0 | public void update(Channel channel) throws Exception { DBOperation dbo = null; Connection connection = null; PreparedStatement preparedStatement = null; ResultSet resultSet = null; String exp = channel.getExtendParent(); String path = channel.getPath(); try { String sqlStr = "UPDATE t_ip_channel SET id=?,name=?,description=?,ascii_name=?,site_id=?,type=?,data_url=?,template_id=?,use_status=?,order_no=?,style=?,creator=?,create_date=?,refresh_flag=?,page_num=? where channel_path=?"; dbo = createDBOperation(); connection = dbo.getConnection(); connection.setAutoCommit(false); String[] selfDefinePath = getSelfDefinePath(path, exp, connection, preparedStatement, resultSet); selfDefineDelete(selfDefinePath, connection, preparedStatement); selfDefineAdd(selfDefinePath, channel, connection, preparedStatement); preparedStatement = connection.prepareStatement(sqlStr); preparedStatement.setInt(1, channel.getChannelID()); preparedStatement.setString(2, channel.getName()); preparedStatement.setString(3, channel.getDescription()); preparedStatement.setString(4, channel.getAsciiName()); preparedStatement.setInt(5, channel.getSiteId()); preparedStatement.setString(6, channel.getChannelType()); preparedStatement.setString(7, channel.getDataUrl()); if (channel.getTemplateId() == null || channel.getTemplateId().trim().equals("")) preparedStatement.setNull(8, Types.INTEGER); else preparedStatement.setInt(8, Integer.parseInt(channel.getTemplateId())); preparedStatement.setString(9, channel.getUseStatus()); preparedStatement.setInt(10, channel.getOrderNo()); preparedStatement.setString(11, channel.getStyle()); preparedStatement.setInt(12, channel.getCreator()); preparedStatement.setTimestamp(13, (Timestamp) channel.getCreateDate()); preparedStatement.setString(14, channel.getRefresh()); preparedStatement.setInt(15, channel.getPageNum()); preparedStatement.setString(16, channel.getPath()); preparedStatement.executeUpdate(); connection.commit(); int resID = channel.getChannelID() + Const.CHANNEL_TYPE_RES; StructResource sr = new StructResource(); sr.setResourceID(Integer.toString(resID)); sr.setOperateID(Integer.toString(1)); sr.setOperateTypeID(Const.OPERATE_TYPE_ID); sr.setTypeID(Const.RES_TYPE_ID); StructAuth sa = new AuthorityManager().getExternalAuthority(sr); int authID = sa.getAuthID(); if (authID == 0) { String resName = channel.getName(); int resTypeID = Const.RES_TYPE_ID; int operateTypeID = Const.OPERATE_TYPE_ID; String remark = ""; AuthorityManager am = new AuthorityManager(); am.createExtResource(Integer.toString(resID), resName, resTypeID, operateTypeID, remark); } } catch (SQLException ex) { connection.rollback(); log.error("����Ƶ��ʧ�ܣ�channelPath=" + channel.getPath()); throw ex; } finally { close(resultSet, null, preparedStatement, connection, dbo); } } | public SWORDEntry ingestDepost(final DepositCollection pDeposit, final ServiceDocument pServiceDocument) throws SWORDException { try { ZipFileAccess tZipFile = new ZipFileAccess(super.getTempDir()); LOG.debug("copying file"); String tZipTempFileName = super.getTempDir() + "uploaded-file.tmp"; IOUtils.copy(pDeposit.getFile(), new FileOutputStream(tZipTempFileName)); Datastream tDatastream = new LocalDatastream(super.getGenericFileName(pDeposit), this.getContentType(), tZipTempFileName); _datastreamList.add(tDatastream); _datastreamList.addAll(tZipFile.getFiles(tZipTempFileName)); int i = 0; boolean found = false; for (i = 0; i < _datastreamList.size(); i++) { if (_datastreamList.get(i).getId().equalsIgnoreCase("mets")) { found = true; break; } } if (found) { SAXBuilder tBuilder = new SAXBuilder(); _mets = new METSObject(tBuilder.build(((LocalDatastream) _datastreamList.get(i)).getPath())); LocalDatastream tLocalMETSDS = (LocalDatastream) _datastreamList.remove(i); new File(tLocalMETSDS.getPath()).delete(); _datastreamList.add(_mets.getMETSDs()); _datastreamList.addAll(_mets.getMetadataDatastreams()); } else { throw new SWORDException("Couldn't find a METS document in the zip file, ensure it is named mets.xml or METS.xml"); } SWORDEntry tEntry = super.ingestDepost(pDeposit, pServiceDocument); tZipFile.removeLocalFiles(); return tEntry; } catch (IOException tIOExcpt) { String tMessage = "Couldn't retrieve METS from deposit: " + tIOExcpt.toString(); LOG.error(tMessage); tIOExcpt.printStackTrace(); throw new SWORDException(tMessage, tIOExcpt); } catch (JDOMException tJDOMExcpt) { String tMessage = "Couldn't build METS from deposit: " + tJDOMExcpt.toString(); LOG.error(tMessage); tJDOMExcpt.printStackTrace(); throw new SWORDException(tMessage, tJDOMExcpt); } } | 14,728 |
1 | public Object construct() { String fullName = lRegatta.getSaveDirectory() + lRegatta.getSaveName(); System.out.println(MessageFormat.format(res.getString("MainMessageBackingUp"), new Object[] { fullName + BAK })); try { FileInputStream fis = new FileInputStream(new File(fullName)); FileOutputStream fos = new FileOutputStream(new File(fullName + BAK)); int bufsize = 1024; byte[] buffer = new byte[bufsize]; int n = 0; while ((n = fis.read(buffer, 0, bufsize)) >= 0) fos.write(buffer, 0, n); fos.flush(); fos.close(); } catch (java.io.IOException ex) { Util.showError(ex, true); } return null; } | public File addFile(File file, String suffix) throws IOException { if (file.exists() && file.isFile()) { File nf = File.createTempFile(prefix, "." + suffix, workdir); nf.delete(); if (!file.renameTo(nf)) { IOUtils.copy(file, nf); } synchronized (fileList) { fileList.add(nf); } if (log.isDebugEnabled()) { log.debug("Add file [" + file.getPath() + "] -> [" + nf.getPath() + "]"); } return nf; } return file; } | 14,729 |
1 | public boolean copier(String source, String nomFichierSource, java.io.File destination) { boolean resultat = false; OutputStream tmpOut; try { tmpOut = new BufferedOutputStream(new FileOutputStream(nomFichierSource + "001.tmp")); InputStream is = getClass().getResourceAsStream(source + nomFichierSource); int i; while ((i = is.read()) != -1) tmpOut.write(i); tmpOut.close(); is.close(); } catch (IOException ex) { ex.printStackTrace(); } FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(new File(nomFichierSource + "001.tmp")).getChannel(); out = new FileOutputStream(destination).getChannel(); in.transferTo(0, in.size(), out); resultat = true; } catch (java.io.FileNotFoundException f) { } catch (java.io.IOException e) { } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } new File(nomFichierSource + "001.tmp").delete(); return (resultat); } | public byte[] read(IFile input) { InputStream contents = null; try { ByteArrayOutputStream baos = new ByteArrayOutputStream(); contents = input.getContents(); IOUtils.copy(contents, baos); return baos.toByteArray(); } catch (IOException e) { Activator.logUnexpected(null, e); } catch (CoreException e) { Activator.logUnexpected(null, e); } finally { IOUtils.closeQuietly(contents); } return null; } | 14,730 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | @Override public String toString() { if (byteArrayOutputStream == null) return "<Unparsed binary data: Content-Type=" + getHeader("Content-Type") + " >"; String charsetName = getCharsetName(); if (charsetName == null) charsetName = "ISO-8859-1"; try { if (unzip) { GZIPInputStream gzipInputStream = new GZIPInputStream(new ByteArrayInputStream(byteArrayOutputStream.toByteArray())); ByteArrayOutputStream unzippedResult = new ByteArrayOutputStream(); IOUtils.copy(gzipInputStream, unzippedResult); return unzippedResult.toString(charsetName); } else { return byteArrayOutputStream.toString(charsetName); } } catch (UnsupportedEncodingException e) { throw new OutputException(e); } catch (IOException e) { throw new OutputException(e); } } | 14,731 |
0 | private void detachFile(File file, Block b) throws IOException { File tmpFile = volume.createDetachFile(b, file.getName()); try { IOUtils.copyBytes(new FileInputStream(file), new FileOutputStream(tmpFile), 16 * 1024, true); if (file.length() != tmpFile.length()) { throw new IOException("Copy of file " + file + " size " + file.length() + " into file " + tmpFile + " resulted in a size of " + tmpFile.length()); } FileUtil.replaceFile(tmpFile, file); } catch (IOException e) { boolean done = tmpFile.delete(); if (!done) { DataNode.LOG.info("detachFile failed to delete temporary file " + tmpFile); } throw e; } } | private static void loadQueryProcessorFactories() { qpFactoryMap = new HashMap<String, QueryProcessorFactoryIF>(); Enumeration<URL> resources = null; try { resources = QueryUtils.class.getClassLoader().getResources(RESOURCE_STRING); } catch (IOException e) { log.error("Error while trying to look for " + "QueryProcessorFactoryIF implementations.", e); } while (resources != null && resources.hasMoreElements()) { URL url = resources.nextElement(); InputStream is = null; try { is = url.openStream(); } catch (IOException e) { log.warn("Error opening stream to QueryProcessorFactoryIF service description.", e); } if (is != null) { BufferedReader rdr = new BufferedReader(new InputStreamReader(is)); String line; try { while ((line = rdr.readLine()) != null) { try { ClassLoader classLoader = Thread.currentThread().getContextClassLoader(); Class<?> c = Class.forName(line, true, classLoader); if (QueryProcessorFactoryIF.class.isAssignableFrom(c)) { QueryProcessorFactoryIF factory = (QueryProcessorFactoryIF) c.newInstance(); qpFactoryMap.put(factory.getQueryLanguage().toUpperCase(), factory); } else { log.warn("Wrong entry for QueryProcessorFactoryIF service " + "description, '" + line + "' is not implementing the " + "correct interface."); } } catch (Exception e) { log.warn("Could not create an instance for " + "QueryProcessorFactoryIF service '" + line + "'."); } } } catch (IOException e) { log.warn("Could not read from QueryProcessorFactoryIF " + "service descriptor.", e); } } } if (!qpFactoryMap.containsKey(DEFAULT_LANGUAGE)) { qpFactoryMap.put(DEFAULT_LANGUAGE, new TologQueryProcessorFactory()); } } | 14,732 |
0 | public static void upper() throws Exception { TrustManager[] trustAllCerts = new TrustManager[] { new X509TrustManager() { public java.security.cert.X509Certificate[] getAcceptedIssuers() { return null; } public void checkClientTrusted(java.security.cert.X509Certificate[] certs, String authType) { } public void checkServerTrusted(java.security.cert.X509Certificate[] certs, String authType) { } } }; SSLContext sc = SSLContext.getInstance("SSL"); sc.init(null, trustAllCerts, new java.security.SecureRandom()); HttpsURLConnection.setDefaultSSLSocketFactory(sc.getSocketFactory()); HostnameVerifier hv = new HostnameVerifier() { public boolean verify(String urlHostName, SSLSession session) { System.out.println("Warning: URL Host: " + urlHostName + " vs. " + session.getPeerHost()); return true; } }; HttpsURLConnection.setDefaultHostnameVerifier(hv); URL url = new URL("https://test.ctpe.net/payment/query"); URLConnection conn = url.openConnection(); String data = "<Request version='1.0'> " + "<Header> " + " <Security sender='ff80808109c5bcc00109c5bce9f1003a'/> " + "</Header> " + "<Query entity='ff80808109c5bcc00109c5bce9f50056' level='CHANNEL' mode='INTEGRATOR_TEST'> " + " <User login='ff80808109c5bcc00109c5bce9f20042' pwd='geheim'/> " + " <Period from='2006-03-04' to='2006-03-04'/> " + " <Types> " + " <Type code='RF'/> " + " <Type code='PA'/> " + " <Type code='RV'/> " + " </Types> " + "</Query> " + "</Request> "; conn.setDoOutput(true); OutputStreamWriter wr = new OutputStreamWriter(conn.getOutputStream()); wr.write("load=" + data); wr.flush(); wr.close(); BufferedReader rd = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = rd.readLine()) != null) { System.out.println(line); } rd.close(); } | @Override public void excluir(Disciplina t) throws Exception { PreparedStatement stmt = null; String sql = "DELETE from disciplina where id_disciplina = ?"; try { stmt = conexao.prepareStatement(sql); stmt.setInt(1, t.getIdDisciplina()); stmt.executeUpdate(); conexao.commit(); } catch (SQLException e) { conexao.rollback(); throw e; } finally { try { stmt.close(); conexao.close(); } catch (SQLException e) { throw e; } } } | 14,733 |
1 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | private void loadMap() { final String wordList = "vietwordlist.txt"; try { File dataFile = new File(supportDir, wordList); if (!dataFile.exists()) { final ReadableByteChannel input = Channels.newChannel(ClassLoader.getSystemResourceAsStream("dict/" + dataFile.getName())); final FileChannel output = new FileOutputStream(dataFile).getChannel(); output.transferFrom(input, 0, 1000000L); input.close(); output.close(); } long fileLastModified = dataFile.lastModified(); if (map == null) { map = new HashMap(); } else { if (fileLastModified <= mapLastModified) { return; } map.clear(); } mapLastModified = fileLastModified; BufferedReader bs = new BufferedReader(new InputStreamReader(new FileInputStream(dataFile), "UTF-8")); String accented; while ((accented = bs.readLine()) != null) { String plain = VietUtilities.stripDiacritics(accented); map.put(plain.toLowerCase(), accented); } bs.close(); } catch (IOException e) { map = null; e.printStackTrace(); JOptionPane.showMessageDialog(this, myResources.getString("Cannot_find_\"") + wordList + myResources.getString("\"_in\n") + supportDir.toString(), VietPad.APP_NAME, JOptionPane.ERROR_MESSAGE); } } | 14,734 |
1 | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | public void copy(final File source, final File dest) throws IOException { final FileInputStream in = new FileInputStream(source); try { final FileOutputStream out = new FileOutputStream(dest); try { final FileChannel inChannel = in.getChannel(); final FileChannel outChannel = out.getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); } finally { out.close(); } } finally { in.close(); } } | 14,735 |
1 | public static void main(String[] argz) { int X, Y, Z; X = 256; Y = 256; Z = 256; try { String work_folder = "C:\\Documents and Settings\\Entheogen\\My Documents\\school\\jung\\vol_data\\CT_HEAD3"; FileOutputStream out_stream = new FileOutputStream(new File(work_folder + "\\converted.dat")); FileChannel out = out_stream.getChannel(); String f_name = "head256.raw"; File file = new File(work_folder + "\\" + f_name); FileChannel in = new FileInputStream(file).getChannel(); ByteBuffer buffa = BufferUtil.newByteBuffer((int) file.length()); in.read(buffa); in.close(); int N = 256; FloatBuffer output_data = BufferUtil.newFloatBuffer(N * N * N); float min = Float.MAX_VALUE; for (int i = 0, j = 0; i < buffa.capacity(); i++, j++) { byte c = buffa.get(i); min = Math.min(min, (float) (c)); output_data.put((float) (c)); } for (int i = 0; i < Y - X; ++i) { for (int j = 0; j < Y; ++j) { for (int k = 0; k < Z; ++k) { output_data.put(min); } } } output_data.rewind(); System.out.println("size of output_data = " + Integer.toString(output_data.capacity())); out.write(BufferUtil.copyFloatBufferAsByteBuffer(output_data)); ByteBuffer buffa2 = BufferUtil.newByteBuffer(2); buffa2.put((byte) '.'); out.close(); } catch (Exception exc) { exc.printStackTrace(); } } | private void fileCopy(File filename) throws IOException { if (this.stdOut) { this.fileDump(filename); return; } File source_file = new File(spoolPath + "/" + filename); File destination_file = new File(copyPath + "/" + filename); FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; try { if (!source_file.exists() || !source_file.isFile()) throw new FileCopyException("no such source file: " + source_file); if (!source_file.canRead()) throw new FileCopyException("source file is unreadable: " + source_file); if (destination_file.exists()) { if (destination_file.isFile()) { BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); if (!destination_file.canWrite()) throw new FileCopyException("destination file is unwriteable: " + destination_file); if (!this.overwrite) { System.out.print("File " + destination_file + " already exists. Overwrite? (Y/N): "); System.out.flush(); if (!in.readLine().toUpperCase().equals("Y")) throw new FileCopyException("copy cancelled."); } } else throw new FileCopyException("destination is not a file: " + destination_file); } else { File parentdir = parent(destination_file); if (!parentdir.exists()) throw new FileCopyException("destination directory doesn't exist: " + destination_file); if (!parentdir.canWrite()) throw new FileCopyException("destination directory is unwriteable: " + destination_file); } source = new FileInputStream(source_file); destination = new FileOutputStream(destination_file); buffer = new byte[1024]; while ((bytes_read = source.read(buffer)) != -1) { destination.write(buffer, 0, bytes_read); } System.out.println("File " + filename + " successfull copied to " + destination_file); if (this.keep == false && source_file.isFile()) { try { source.close(); } catch (Exception e) { } if (source_file.delete()) { new File(this.spoolPath + "/info/" + filename + ".desc").delete(); } } } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.flush(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } | 14,736 |
1 | public static void copyFile(String input, String output) { try { FileChannel srcChannel = new FileInputStream("srcFilename").getChannel(); FileChannel dstChannel = new FileOutputStream("dstFilename").getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException e) { } } | public ResourceMigratorBuilder createResourceMigratorBuilder(NotificationReporter reporter) { return new ResourceMigratorBuilder() { public ResourceMigrator getCompletedResourceMigrator() { return new ResourceMigrator() { public void migrate(InputMetadata meta, InputStream inputStream, OutputCreator outputCreator) throws IOException, ResourceMigrationException { OutputStream outputStream = outputCreator.createOutputStream(); IOUtils.copy(inputStream, outputStream); } }; } public void setTarget(Version version) { } public void startType(String typeName) { } public void setRegexpPathRecogniser(String re) { } public void setCustomPathRecogniser(PathRecogniser pathRecogniser) { } public void addRegexpContentRecogniser(Version version, String re) { } public void addCustomContentRecogniser(Version version, ContentRecogniser contentRecogniser) { } public XSLStreamMigratorBuilder createXSLStreamMigratorBuilder() { return null; } public void addStep(Version inputVersion, Version outputVersion, StreamMigrator streamMigrator) { } public void endType() { } }; } | 14,737 |
0 | public void insertUser(final User user) throws IOException { try { Connection conn = null; boolean autoCommit = false; try { conn = pool.getConnection(); autoCommit = conn.getAutoCommit(); conn.setAutoCommit(false); final PreparedStatement insertUser = conn.prepareStatement("insert into users (userId, mainRoleId) values (?,?)"); log.finest("userId= " + user.getUserId()); insertUser.setString(1, user.getUserId()); log.finest("mainRole= " + user.getMainRole().getId()); insertUser.setInt(2, user.getMainRole().getId()); insertUser.executeUpdate(); final PreparedStatement insertRoles = conn.prepareStatement("insert into userRoles (userId, roleId) values (?,?)"); for (final Role role : user.getRoles()) { insertRoles.setString(1, user.getUserId()); insertRoles.setInt(2, role.getId()); insertRoles.executeUpdate(); } conn.commit(); } catch (Throwable t) { if (conn != null) conn.rollback(); log.log(Level.SEVERE, t.toString(), t); throw new SQLException(t.toString()); } finally { if (conn != null) { conn.setAutoCommit(autoCommit); conn.close(); } } } catch (final SQLException sqle) { log.log(Level.SEVERE, sqle.toString(), sqle); throw new IOException(sqle.toString()); } } | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | 14,738 |
1 | private static boolean validateSshaPwd(String sSshaPwd, String sUserPwd) { boolean b = false; if (sSshaPwd != null && sUserPwd != null) { if (sSshaPwd.startsWith(SSHA_PREFIX)) { sSshaPwd = sSshaPwd.substring(SSHA_PREFIX.length()); try { MessageDigest md = MessageDigest.getInstance("SHA-1"); BASE64Decoder decoder = new BASE64Decoder(); byte[] ba = decoder.decodeBuffer(sSshaPwd); byte[] hash = new byte[FIXED_HASH_SIZE]; byte[] salt = new byte[FIXED_SALT_SIZE]; System.arraycopy(ba, 0, hash, 0, FIXED_HASH_SIZE); System.arraycopy(ba, FIXED_HASH_SIZE, salt, 0, FIXED_SALT_SIZE); md.update(sUserPwd.getBytes()); md.update(salt); byte[] baPwdHash = md.digest(); b = MessageDigest.isEqual(hash, baPwdHash); } catch (Exception exc) { exc.printStackTrace(); } } } return b; } | public void insertQuotation(final String sText, final Source aSource) throws ConfigHandlerError, com.sun.star.uno.Exception { final XTextDocument xTextDocument = (XTextDocument) this.docController.getXInterface(XTextDocument.class, this.docController.getXFrame().getController().getModel()); final XMultiServiceFactory xMultiServiceFactory = (XMultiServiceFactory) this.docController.getXInterface(XMultiServiceFactory.class, xTextDocument); final XText xText = xTextDocument.getText(); final XTextViewCursor xTextViewCursor = ((XTextViewCursorSupplier) this.docController.getXInterface(XTextViewCursorSupplier.class, this.docController.getXFrame().getController())).getViewCursor(); final XTextRange xTextRange = xTextViewCursor.getStart(); if (aSource.getSourceType() == SourceType.QUOTE || aSource.getSourceType() == SourceType.WEBQUOTE || aSource.getSourceType() == SourceType.WEBQUOTE) { final XPropertySet xQuoteProps = (XPropertySet) this.docController.getXInterface(XPropertySet.class, xTextViewCursor); if (this.docController.getTemplateController().isIndentation()) { xText.insertControlCharacter(xTextViewCursor, ControlCharacter.PARAGRAPH_BREAK, false); xQuoteProps.setPropertyValue("ParaStyleName", new String("Quotations")); } xQuoteProps.setPropertyValue("CharStyleName", new String("Citation")); final Object aBookmark = xMultiServiceFactory.createInstance("com.sun.star.text.Bookmark"); this.sourceUtils.setNameToObject(aBookmark, this.docController.getLanguageController().__("Quote: ") + aSource.getShortinfo()); final XTextContent xTextContent = (XTextContent) this.docController.getXInterface(XTextContent.class, aBookmark); xText.insertTextContent(xTextRange, xTextContent, false); this.sourceUtils.insertBibliographyEntry(xMultiServiceFactory, xTextRange, aSource, sText); if (this.docController.getTemplateController().isIndentation()) { xText.insertControlCharacter(xTextViewCursor, ControlCharacter.PARAGRAPH_BREAK, false); xQuoteProps.setPropertyValue("ParaStyleName", new String(this.docController.getLanguageController().__("Default"))); } xQuoteProps.setPropertyValue("CharStyleName", new String(this.docController.getLanguageController().__("Default"))); } else if (aSource.getSourceType() == SourceType.IMAGE || aSource.getSourceType() == SourceType.TABLE) { xText.insertControlCharacter(xTextRange, ControlCharacter.PARAGRAPH_BREAK, false); final XTextFrame xFrame = this.sourceUtils.getTextFrame(aSource.getShortinfo(), xMultiServiceFactory); xText.insertTextContent(xTextRange, xFrame, false); final XText xFrameText = xFrame.getText(); final XTextCursor xFrameCursor = xFrameText.createTextCursor(); final Size aNewSize = new Size(); XPropertySet xBaseFrameProps = null; final Size aPageTextAreaSize = this.sourceUtils.getPageTextAreaSize(xTextDocument, xTextViewCursor); if (aSource.getSourceType() == SourceType.IMAGE) { try { this.sourceUtils.setNameToObject(xFrame, this.docController.getLanguageController().__("Caption illustration: ") + aSource.getShortinfo()); final XNameContainer xBitmapContainer = (XNameContainer) this.docController.getXInterface(XNameContainer.class, xMultiServiceFactory.createInstance("com.sun.star.drawing.BitmapTable")); final XTextContent xImage = (XTextContent) this.docController.getXInterface(XTextContent.class, xMultiServiceFactory.createInstance("com.sun.star.text.TextGraphicObject")); this.sourceUtils.setNameToObject(xImage, this.docController.getLanguageController().__("Illustration: ") + aSource.getShortinfo()); final String graphicURL = this.docController.getPathUtils().getFileURLFromSystemPath(((Image) aSource).getFile().getPath(), ((Image) aSource).getFile().getPath()); xBaseFrameProps = (XPropertySet) this.docController.getXInterface(XPropertySet.class, xImage); xBaseFrameProps.setPropertyValue("AnchorType", com.sun.star.text.TextContentAnchorType.AT_PARAGRAPH); xBaseFrameProps.setPropertyValue("GraphicURL", graphicURL); final MessageDigest md = MessageDigest.getInstance("MD5"); md.update(graphicURL.getBytes(), 0, graphicURL.length()); final String internalName = new BigInteger(1, md.digest()).toString(16); xBitmapContainer.insertByName(internalName, graphicURL); final String internalURL = (String) (xBitmapContainer.getByName(internalName)); xBaseFrameProps.setPropertyValue("GraphicURL", internalURL); float imageRatio = (float) this.sourceUtils.getImageSize(((Image) aSource).getFile()).Height / (float) this.sourceUtils.getImageSize(((Image) aSource).getFile()).Width; final Size aUsedAreaSize = new Size(this.sourceUtils.getImageSize(((Image) aSource).getFile()).Width * 26, this.sourceUtils.getImageSize(((Image) aSource).getFile()).Height * 26); if (aUsedAreaSize.Width >= aPageTextAreaSize.Width) { aNewSize.Width = aPageTextAreaSize.Width; aNewSize.Height = (int) (aPageTextAreaSize.Width * imageRatio); } else { aNewSize.Width = aUsedAreaSize.Width; aNewSize.Height = aUsedAreaSize.Height; } xFrameText.insertTextContent(xFrameCursor, xImage, false); xBitmapContainer.removeByName(internalName); } catch (final NoSuchAlgorithmException e) { new ASTError(e).severe(); } this.sourceUtils.insertCaption(xFrame, aSource, this.docController.getLanguageController().__("Illustration"), xMultiServiceFactory); } else if (aSource.getSourceType() == SourceType.TABLE) { this.sourceUtils.setNameToObject(xFrame, this.docController.getLanguageController().__("Caption table: ") + aSource.getShortinfo()); xBaseFrameProps = this.sourceUtils.createTextEmbeddedObjectCalc(xMultiServiceFactory); this.sourceUtils.setNameToObject(xBaseFrameProps, this.docController.getLanguageController().__("Table: ") + aSource.getShortinfo()); xFrameText.insertTextContent(xFrameCursor, (XTextContent) this.docController.getXInterface(XTextContent.class, xBaseFrameProps), false); final XEmbeddedObjectSupplier2 xEmbeddedObjectSupplier = (XEmbeddedObjectSupplier2) this.docController.getXInterface(XEmbeddedObjectSupplier2.class, xBaseFrameProps); final XEmbeddedObject xEmbeddedObject = xEmbeddedObjectSupplier.getExtendedControlOverEmbeddedObject(); long nAspect = xEmbeddedObjectSupplier.getAspect(); final Size aVisualAreaSize = xEmbeddedObject.getVisualAreaSize(nAspect); final XComponent xComponent = xEmbeddedObjectSupplier.getEmbeddedObject(); XSpreadsheets xSpreadsheets = ((XSpreadsheetDocument) this.docController.getXInterface(XSpreadsheetDocument.class, xComponent)).getSheets(); final XIndexAccess xIndexAccess = (XIndexAccess) this.docController.getXInterface(XIndexAccess.class, xSpreadsheets); final XSpreadsheet xSpreadsheet = (XSpreadsheet) this.docController.getXInterface(XSpreadsheet.class, xIndexAccess.getByIndex(0)); final XSheetLinkable xSheetLinkable = (XSheetLinkable) this.docController.getXInterface(XSheetLinkable.class, xSpreadsheet); xSheetLinkable.link(this.docController.getPathUtils().getFileURLFromSystemPath(((Table) aSource).getFile().getPath(), ((Table) aSource).getFile().getPath()), "", "", "", com.sun.star.sheet.SheetLinkMode.NORMAL); final CellRangeAddress aUsedArea = this.sourceUtils.getUsedArea(xSpreadsheet); final Size aUsedAreaSize = this.sourceUtils.calcCellRangeSize(xSpreadsheets, aUsedArea); if ((aUsedAreaSize.Width != aVisualAreaSize.Width) || (aUsedAreaSize.Height != aVisualAreaSize.Height)) { aNewSize.Height = (aUsedAreaSize.Height > aPageTextAreaSize.Height) ? aPageTextAreaSize.Height : aUsedAreaSize.Height; aNewSize.Width = (aUsedAreaSize.Width > aPageTextAreaSize.Width) ? aPageTextAreaSize.Width : aUsedAreaSize.Width; xEmbeddedObject.setVisualAreaSize(nAspect, aNewSize); } this.sourceUtils.insertCaption(xFrame, aSource, this.docController.getLanguageController().__("Table"), xMultiServiceFactory); } xBaseFrameProps.setPropertyValue("Width", aNewSize.Width); xBaseFrameProps.setPropertyValue("Height", aNewSize.Height); final XShape xShape = (XShape) this.docController.getXInterface(XShape.class, xFrame); xShape.setSize(aNewSize); } final XTextFieldsSupplier xTextFieldsSupplier = (XTextFieldsSupplier) this.docController.getXInterface(XTextFieldsSupplier.class, xMultiServiceFactory); final XRefreshable xRefreshable = (XRefreshable) this.docController.getXInterface(XRefreshable.class, xTextFieldsSupplier.getTextFields()); xRefreshable.refresh(); } | 14,739 |
1 | public static Drawable fetchCachedDrawable(String url) throws MalformedURLException, IOException { Log.d(LOG_TAG, "Fetching cached : " + url); String cacheName = md5(url); checkAndCreateDirectoryIfNeeded(); File r = new File(CACHELOCATION + cacheName); if (!r.exists()) { InputStream is = (InputStream) fetch(url); FileOutputStream fos = new FileOutputStream(CACHELOCATION + cacheName); int nextChar; while ((nextChar = is.read()) != -1) fos.write((char) nextChar); fos.flush(); } FileInputStream fis = new FileInputStream(CACHELOCATION + cacheName); Drawable d = Drawable.createFromStream(fis, "src"); return d; } | public void loadXML(URL flux, int status, File file) { try { SAXBuilder sbx = new SAXBuilder(); try { if (file.exists()) { file.delete(); } if (!file.exists()) { URLConnection conn = flux.openConnection(); conn.setConnectTimeout(5000); conn.setReadTimeout(10000); InputStream is = conn.getInputStream(); OutputStream out = new FileOutputStream(file); byte buf[] = new byte[1024]; int len; while ((len = is.read(buf)) > 0) out.write(buf, 0, len); out.close(); is.close(); } } catch (Exception e) { Log.e(Constants.PROJECT_TAG, "Exeption retrieving XML", e); } try { document = sbx.build(new FileInputStream(file)); } catch (Exception e) { Log.e(Constants.PROJECT_TAG, "xml error ", e); } } catch (Exception e) { Log.e(Constants.PROJECT_TAG, "TsukiQueryError", e); } if (document != null) { root = document.getRootElement(); PopulateDatabase(root, status); } } | 14,740 |
1 | private void insertService(String table, int type) { Connection con = null; log.info(""); log.info("正在生成" + table + "的服务。。。。。。。"); try { con = DODataSource.getDefaultCon(); con.setAutoCommit(false); Statement stmt = con.createStatement(); Statement stmt2 = con.createStatement(); String serviceUid = UUIDHex.getInstance().generate(); DOBO bo = DOBO.getDOBOByName(StringUtil.getDotName(table)); List props = new ArrayList(); StringBuffer mainSql = null; String name = ""; String l10n = ""; String prefix = StringUtil.getDotName(table); Boolean isNew = null; switch(type) { case 1: name = prefix + ".insert"; l10n = name; props = bo.retrieveProperties(); mainSql = getInsertSql(props, table); isNew = Boolean.TRUE; break; case 2: name = prefix + ".update"; l10n = name; props = bo.retrieveProperties(); mainSql = this.getModiSql(props, table); isNew = Boolean.FALSE; break; case 3: DOBOProperty property = DOBOProperty.getDOBOPropertyByName(bo.getName(), "objuid"); System.out.println("BOBOBO::::::" + bo); System.out.println("Property::::::" + property); if (property == null) { return; } name = prefix + ".delete"; l10n = name; props.add(property); mainSql = new StringBuffer("delete from ").append(table).append(" where objuid = ?"); break; case 4: property = DOBOProperty.getDOBOPropertyByName(bo.getName(), "objuid"); if (property == null) { return; } name = prefix + ".browse"; l10n = name; props.add(property); mainSql = new StringBuffer("select * from ").append(table).append(" where objuid = ?"); break; case 5: name = prefix + ".list"; l10n = name; mainSql = new StringBuffer("select * from ").append(table); } this.setParaLinkBatch(props, stmt2, serviceUid, isNew); StringBuffer aSql = new StringBuffer("insert into DO_Service(objuid,l10n,name,bouid,mainSql) values(").append("'").append(serviceUid).append("','").append(l10n).append("','").append(name).append("','").append(this.getDOBOUid(table)).append("','").append(mainSql).append("')"); log.info("Servcice's Sql:" + aSql.toString()); stmt.executeUpdate(aSql.toString()); stmt2.executeBatch(); con.commit(); } catch (SQLException ex) { try { con.rollback(); } catch (SQLException ex2) { ex2.printStackTrace(); } ex.printStackTrace(); } finally { try { if (!con.isClosed()) { con.close(); } } catch (SQLException ex1) { ex1.printStackTrace(); } } } | protected void update(String sql, Object[] args) { Connection conn = null; PreparedStatement pstmt = null; try { conn = JdbcUtils.getConnection(); conn.setAutoCommit(false); pstmt = conn.prepareStatement(sql); this.setParameters(pstmt, args); pstmt.executeUpdate(); conn.commit(); conn.setAutoCommit(true); } catch (SQLException e) { try { if (conn != null) { conn.rollback(); conn.setAutoCommit(true); } } catch (SQLException ex) { ex.printStackTrace(); } throw new JdbcDaoException(e.getMessage(), e); } finally { JdbcUtils.free(pstmt, conn); } } | 14,741 |
0 | public static byte[] ComputeForText(String ThisString) throws Exception { byte[] Result; MessageDigest MD5Hasher; MD5Hasher = MessageDigest.getInstance("MD5"); MD5Hasher.update(ThisString.replaceAll("\r", "").getBytes("iso-8859-1")); Result = MD5Hasher.digest(); return Result; } | public static void saveDigraph(mainFrame parentFrame, DigraphView digraphView, File tobeSaved) { DigraphFile digraphFile = new DigraphFile(); DigraphTextFile digraphTextFile = new DigraphTextFile(); try { if (!DigraphFile.DIGRAPH_FILE_EXTENSION.equals(getExtension(tobeSaved))) { tobeSaved = new File(tobeSaved.getPath() + "." + DigraphFile.DIGRAPH_FILE_EXTENSION); } File dtdFile = new File(tobeSaved.getParent() + "/" + DigraphFile.DTD_FILE); if (!dtdFile.exists()) { File baseDigraphDtdFile = parentFrame.getDigraphDtdFile(); if (baseDigraphDtdFile != null && baseDigraphDtdFile.exists()) { try { BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(dtdFile)); BufferedInputStream bis = new BufferedInputStream(new FileInputStream(baseDigraphDtdFile)); while (bis.available() > 1) { bos.write(bis.read()); } bis.close(); bos.close(); } catch (IOException ex) { System.out.println("Unable to Write Digraph DTD File: " + ex.getMessage()); } } else { System.out.println("Unable to Find Base Digraph DTD File: "); } } Digraph digraph = digraphView.getDigraph(); digraphFile.saveDigraph(tobeSaved, digraph); String fileName = tobeSaved.getName(); int extensionIndex = fileName.lastIndexOf("."); if (extensionIndex > 0) { fileName = fileName.substring(0, extensionIndex + 1) + "txt"; } else { fileName = fileName + ".txt"; } File textFile = new File(tobeSaved.getParent() + "/" + fileName); digraphTextFile.saveDigraph(textFile, digraph); digraphView.setDigraphDirty(false); parentFrame.setFilePath(tobeSaved.getPath()); parentFrame.setSavedOnce(true); } catch (DigraphFileException exep) { JOptionPane.showMessageDialog(parentFrame, "Error Saving File:\n" + exep.getMessage(), "Save Error", JOptionPane.ERROR_MESSAGE); } catch (DigraphException exep) { JOptionPane.showMessageDialog(parentFrame, "Error Retrieving Digraph from View:\n" + exep.getMessage(), "Save Error", JOptionPane.ERROR_MESSAGE); } } | 14,742 |
0 | public String post(Map<String, String> headersMap, String monitoringRequest) { HttpClient httpClient = new DefaultHttpClient(); httpClient.getParams().setParameter("http.useragent", "sla@soi OCCI Client v0.2"); HttpPost httpPost = new HttpPost("http://" + hostname + ":" + port + resource); List<Header> headersList = this.convert2Headers(headersMap); for (Iterator<Header> iterator = headersList.iterator(); iterator.hasNext(); ) { httpPost.addHeader(iterator.next()); } if (monitoringRequest == null) { logger.info("Monitoring Request has not been specified - "); monitoringRequest = Terms.MONITORING_NOT_CONFIGURED; logger.info("Monitoring Request has not been specified - " + monitoringRequest); } else { logger.info("Monitoring Request is - " + monitoringRequest); } logger.info(httpPost.getRequestLine()); logger.info(httpPost.getAllHeaders()); Header[] headersArray = httpPost.getAllHeaders(); String[] fields = { Response.Location }; HashMap<String, String> occiHeaders = new HashMap<String, String>(); for (int H = 0; H < headersArray.length; H++) { Header header = headersArray[H]; logger.info("header - request -" + header.toString()); logger.info(" headerName - " + header.getName()); logger.info(" headerValue - " + header.getValue()); } String statusLine = null; try { HttpResponse httpResponse = httpClient.execute(httpPost); statusLine = httpResponse.getStatusLine().toString(); int statusCode = httpResponse.getStatusLine().getStatusCode(); logger.info("----------------------------------------"); logger.info("StatusLine - (full) - " + httpResponse.getStatusLine()); logger.info(" StatusCode - " + statusCode); logger.info(" Reason - " + httpResponse.getStatusLine().getReasonPhrase()); logger.info(" Protocol - " + httpResponse.getStatusLine().getProtocolVersion().toString()); logger.info("----------------------------------------"); if (StatusCode.validate(statusCode)) { logger.info("Response Validated"); } else { logger.error("Response NOT Validated"); } Header[] headers = httpResponse.getAllHeaders(); for (int i = 0; i < headers.length; i++) { Header header = headers[i]; logger.info("header - response - " + header.toString()); logger.info(" headerName - " + header.getName()); logger.info(" headerValue - " + header.getValue()); for (int h = 0; h < fields.length; h++) { logger.info(" Looking for - " + fields[h]); if (fields[h].equals(header.getName().toString())) { logger.info(" Found an OCCI Header - " + header.getName()); occiHeaders.put(header.getName(), header.getValue()); } } } } catch (org.apache.http.conn.HttpHostConnectException e) { e.printStackTrace(); logger.error(e); return null; } catch (ClientProtocolException e) { e.printStackTrace(); logger.error(e); return null; } catch (IOException e) { e.printStackTrace(); logger.error(e); return null; } finally { httpClient.getConnectionManager().shutdown(); } logger.info("occiHeaders - " + occiHeaders); if (occiHeaders.containsKey(Response.Location)) { logger.info("Valid Provision"); return occiHeaders.get(Response.Location).toString().replaceAll(Response.jobs, ""); } logger.info("NOT a Valid Provision" + statusLine); return null; } | private String createVisadFile(String fileName) throws FileNotFoundException, IOException { ArrayList<String> columnNames = new ArrayList<String>(); String visadFile = fileName + ".visad"; BufferedReader buf = new BufferedReader(new FileReader(fileName)); String firstLine = buf.readLine().replace('"', ' '); StringTokenizer st = new StringTokenizer(firstLine, ","); while (st.hasMoreTokens()) columnNames.add(st.nextToken()); StringBuilder headerBuilder = new StringBuilder(); headerBuilder.append("(").append(columnNames.get(0)).append("->("); for (int i = 1; i < columnNames.size(); i++) { headerBuilder.append(columnNames.get(i)); if (i < columnNames.size() - 1) headerBuilder.append(","); } headerBuilder.append("))"); BufferedWriter out = new BufferedWriter(new FileWriter(visadFile)); out.write(headerBuilder.toString() + "\n"); out.write(firstLine + "\n"); String line; while ((line = buf.readLine()) != null) out.write(line + "\n"); buf.close(); out.close(); return visadFile; } | 14,743 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static void copyFile(String src, String target) throws IOException { FileChannel ic = new FileInputStream(src).getChannel(); FileChannel oc = new FileOutputStream(target).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } | 14,744 |
1 | protected String readFileUsingHttp(String fileUrlName) { String response = ""; try { URL url = new URL(fileUrlName); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; httpConn.setRequestProperty("Content-Type", "text/html"); httpConn.setRequestProperty("Content-Length", "0"); httpConn.setRequestMethod("GET"); httpConn.setDoOutput(true); httpConn.setDoInput(true); httpConn.setAllowUserInteraction(false); InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader in = new BufferedReader(isr); String inputLine = ""; while ((inputLine = in.readLine()) != null) { response += inputLine + "\n"; } if (response.endsWith("\n")) { response = response.substring(0, response.length() - 1); } in.close(); } catch (Exception x) { x.printStackTrace(); } return response; } | public String getScript(String script, String params) { params = params.replaceFirst("&", "?"); StringBuffer document = new StringBuffer(); try { URL url = new URL(script + params); URLConnection conn = url.openConnection(); BufferedReader reader = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line = null; while ((line = reader.readLine()) != null) { document.append(line + "\n"); } reader.close(); } catch (Exception e) { return e.toString(); } return document.toString(); } | 14,745 |
0 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static void main(String[] args) { Stopwatch.start(""); HtmlParser parser = new HtmlParser(); try { Stopwatch.printTimeReset("", "> ParserDelegator"); ParserDelegator del = new ParserDelegator(); Stopwatch.printTimeReset("", "> url"); URL url = new URL(args[0]); Stopwatch.printTimeReset("", "> openStrem"); InputStream is = url.openStream(); Stopwatch.printTimeReset("", "< parse"); del.parse(new InputStreamReader(is), parser, true); Stopwatch.printTimeReset("", "< parse"); } catch (Throwable t) { t.printStackTrace(); } Stopwatch.printTimeReset("", "> traversal"); TreeTraversal.traverse(parser.startTag, "eachChild", new Function() { String lastPath = null; public void apply(Object obj) { if (obj instanceof String) { System.out.print(lastPath + ":"); System.out.println(obj); return; } Tag t = (Tag) obj; lastPath = Utils.tagPath(t); System.out.println(lastPath); } }); Stopwatch.printTimeReset("", "< traversal"); } | 14,746 |
1 | @Override protected AuthenticationHandlerResponse authenticateInternal(final Connection c, final AuthenticationCriteria criteria) throws LdapException { byte[] hash = new byte[DIGEST_SIZE]; try { final MessageDigest md = MessageDigest.getInstance(passwordScheme); md.update(criteria.getCredential().getBytes()); hash = md.digest(); } catch (NoSuchAlgorithmException e) { throw new LdapException(e); } final LdapAttribute la = new LdapAttribute("userPassword", String.format("{%s}%s", passwordScheme, LdapUtil.base64Encode(hash)).getBytes()); final CompareOperation compare = new CompareOperation(c); final CompareRequest request = new CompareRequest(criteria.getDn(), la); request.setControls(getAuthenticationControls()); final Response<Boolean> compareResponse = compare.execute(request); return new AuthenticationHandlerResponse(compareResponse.getResult(), compareResponse.getResultCode(), c, null, compareResponse.getControls()); } | public static Properties addAttributes(Node node, String[] names, Properties props, LogEvent evt) throws ConfigurationException { if (props == null) props = new Properties(); try { MessageDigest md = MessageDigest.getInstance("MD5"); for (int i = 0; i < names.length; i++) { String value = addProperty(names[i], props, node, evt); if (value != null) { md.update(names[i].getBytes()); md.update(value.getBytes()); } } byte[] digest = md.digest(); evt.addMessage("digest " + ISOUtil.hexString(digest)); props.put(DIGEST_PROPERTY, digest); } catch (NoSuchAlgorithmException e) { throw new ConfigurationException(e); } return props; } | 14,747 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public void zipUp() throws PersistenceException { ZipOutputStream out = null; try { if (!backup.exists()) backup.createNewFile(); out = new ZipOutputStream(new FileOutputStream(backup)); out.setLevel(Deflater.DEFAULT_COMPRESSION); for (String file : backupDirectory.list()) { logger.debug("Deflating: " + file); FileInputStream in = null; try { in = new FileInputStream(new File(backupDirectory, file)); out.putNextEntry(new ZipEntry(file)); IOUtils.copy(in, out); } finally { out.closeEntry(); if (null != in) in.close(); } } FileUtils.deleteDirectory(backupDirectory); } catch (Exception ex) { logger.error("Unable to ZIP the backup {" + backupDirectory.getAbsolutePath() + "}.", ex); throw new PersistenceException(ex); } finally { try { if (null != out) out.close(); } catch (IOException e) { logger.error("Unable to close ZIP output stream.", e); } } } | 14,748 |
0 | public static String extractIconPath(String siteURL) throws IOException { siteURL = siteURL.trim(); if (!siteURL.startsWith("http://")) { siteURL = "http://" + siteURL; } URL url = new URL(siteURL); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String iconURL = null; String iconPath = null; String inputLine; while ((inputLine = in.readLine()) != null) { if (inputLine.contains("type=\"image/x-icon\"") || inputLine.toLowerCase().contains("rel=\"shortcut icon\"")) { String tmp = new String(inputLine); String[] smallLines = inputLine.replace(">", ">\n").split("\n"); for (String smallLine : smallLines) { if (smallLine.contains("type=\"image/x-icon\"") || smallLine.toLowerCase().contains("rel=\"shortcut icon\"")) { tmp = smallLine; break; } } iconURL = tmp.replaceAll("^.*href=\"", ""); iconURL = iconURL.replaceAll("\".*", ""); tmp = null; String originalSiteURL = new String(siteURL); siteURL = getHome(siteURL); if (iconURL.charAt(0) == '/') { if (siteURL.charAt(siteURL.length() - 1) == '/') { iconURL = siteURL + iconURL.substring(1); } else { iconURL = siteURL + iconURL; } } else if (!iconURL.startsWith("http://")) { if (siteURL.charAt(siteURL.length() - 1) == '/') { iconURL = siteURL + iconURL; } else { iconURL = siteURL + "/" + iconURL; } } siteURL = originalSiteURL; break; } if (inputLine.contains("</head>".toLowerCase())) { break; } } in.close(); siteURL = getHome(siteURL); if (iconURL == null || "".equals(iconURL.trim())) { iconURL = "favicon.ico"; if (siteURL.charAt(siteURL.length() - 1) == '/') { iconURL = siteURL + iconURL; } else { iconURL = siteURL + "/" + iconURL; } } try { String iconFileName = siteURL; if (iconFileName.startsWith("http://")) { iconFileName = iconFileName.substring(7); } iconFileName = iconFileName.replaceAll("\\W", " ").trim().replace(" ", "_").concat(".ico"); iconPath = JReader.getConfig().getShortcutIconsDir() + File.separator + iconFileName; InputStream inIcon = new URL(iconURL).openStream(); OutputStream outIcon = new FileOutputStream(iconPath); byte[] buf = new byte[1024]; int len; while ((len = inIcon.read(buf)) > 0) { outIcon.write(buf, 0, len); } inIcon.close(); outIcon.close(); } catch (Exception e) { } return iconPath; } | @Override public void execute(Client client, TaskProperties properties, TaskLog taskLog) throws SearchLibException { String url = properties.getValue(propUrl); URI uri; try { uri = new URI(url); } catch (URISyntaxException e) { throw new SearchLibException(e); } String login = properties.getValue(propLogin); String password = properties.getValue(propPassword); String instanceId = properties.getValue(propInstanceId); HttpParams params = new BasicHttpParams(); HttpProtocolParamBean paramsBean = new HttpProtocolParamBean(params); paramsBean.setVersion(HttpVersion.HTTP_1_1); paramsBean.setContentCharset("UTF-8"); HttpClientParams.setRedirecting(params, true); DefaultHttpClient httpClient = new DefaultHttpClient(params); CredentialsProvider credential = httpClient.getCredentialsProvider(); if (login != null && login.length() > 0 && password != null && password.length() > 0) credential.setCredentials(new AuthScope(uri.getHost(), uri.getPort()), new UsernamePasswordCredentials(login, password)); else credential.clear(); HttpPost httpPost = new HttpPost(uri); MultipartEntity reqEntity = new MultipartEntity(); new Monitor().writeToPost(reqEntity); try { reqEntity.addPart("instanceId", new StringBody(instanceId)); } catch (UnsupportedEncodingException e) { throw new SearchLibException(e); } httpPost.setEntity(reqEntity); try { HttpResponse httpResponse = httpClient.execute(httpPost); HttpEntity resEntity = httpResponse.getEntity(); StatusLine statusLine = httpResponse.getStatusLine(); EntityUtils.consume(resEntity); if (statusLine.getStatusCode() != 200) throw new SearchLibException("Wrong code status:" + statusLine.getStatusCode() + " " + statusLine.getReasonPhrase()); taskLog.setInfo("Monitoring data uploaded"); } catch (ClientProtocolException e) { throw new SearchLibException(e); } catch (IOException e) { throw new SearchLibException(e); } finally { ClientConnectionManager connectionManager = httpClient.getConnectionManager(); if (connectionManager != null) connectionManager.shutdown(); } } | 14,749 |
0 | public static String encrypt(String password) { try { MessageDigest digest = MessageDigest.getInstance("SHA-256"); digest.update(password.getBytes()); BASE64Encoder encoder = new BASE64Encoder(); return encoder.encode(digest.digest()); } catch (NoSuchAlgorithmException ns) { ns.printStackTrace(); return password; } } | public void transform(File inputMatrixFile, MatrixIO.Format inputFormat, File outputMatrixFile) throws IOException { FileChannel original = new FileInputStream(inputMatrixFile).getChannel(); FileChannel copy = new FileOutputStream(outputMatrixFile).getChannel(); copy.transferFrom(original, 0, original.size()); original.close(); copy.close(); } | 14,750 |
0 | private synchronized Document executeHttpMethod(final HttpUriRequest httpRequest) throws UnauthorizedException, ThrottledException, ApiException { if (!isNextRequestAllowed()) { try { if (LOGGER.isDebugEnabled()) { LOGGER.debug("Wait " + WAITING_TIME + "ms for request."); } wait(WAITING_TIME); } catch (InterruptedException ie) { throw new ApiException("Waiting for request interrupted.", ie); } } try { if (LOGGER.isDebugEnabled()) { LOGGER.debug("Perform request."); } HttpResponse httpResponse = httpClient.execute(httpRequest); switch(httpResponse.getStatusLine().getStatusCode()) { case HTTP_OK: HttpEntity httpEntity = httpResponse.getEntity(); if (httpEntity != null) { InputStream responseStream = httpEntity.getContent(); if (responseStream == null) { throw new ApiException("TODO"); } else { String response = null; try { response = IOUtils.toString(responseStream, RESPONSE_ENCODING); } catch (IOException ioe) { throw new ApiException("Problem reading response", ioe); } catch (RuntimeException re) { httpRequest.abort(); throw new ApiException("Problem reading response", re); } finally { responseStream.close(); } StringReader responseReader = new StringReader(response); Document document = documentBuilder.parse(new InputSource(responseReader)); return document; } } case HTTP_UNAVAILABLE: throw new ThrottledException("TODO"); case HTTP_UNAUTHORIZED: throw new UnauthorizedException("TODO"); default: throw new ApiException("Unexpected HTTP status code: " + httpResponse.getStatusLine().getStatusCode()); } } catch (SAXException se) { throw new ApiException("TODO", se); } catch (IOException ioe) { throw new ApiException("TODO", ioe); } finally { updateLastRequestTimestamp(); } } | public String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); } | 14,751 |
0 | public void testTransactions0010() throws Exception { Connection cx = getConnection(); dropTable("#t0010"); Statement stmt = cx.createStatement(); stmt.executeUpdate("create table #t0010 " + " (i integer not null, " + " s char(10) not null) "); cx.setAutoCommit(false); PreparedStatement pStmt = cx.prepareStatement("insert into #t0010 values (?, ?)"); int rowsToAdd = 8; final String theString = "abcdefghijklmnopqrstuvwxyz"; int count = 0; for (int i = 1; i <= rowsToAdd; i++) { pStmt.setInt(1, i); pStmt.setString(2, theString.substring(0, i)); count += pStmt.executeUpdate(); } assertTrue(count == rowsToAdd); cx.rollback(); stmt = cx.createStatement(); ResultSet rs = stmt.executeQuery("select s, i from #t0010"); assertNotNull(rs); count = 0; while (rs.next()) { count++; assertTrue(rs.getString(1).trim().length() == rs.getInt(2)); } assertTrue(count == 0); cx.commit(); rowsToAdd = 6; for (int j = 1; j <= 2; j++) { count = 0; for (int i = 1; i <= rowsToAdd; i++) { pStmt.setInt(1, i + ((j - 1) * rowsToAdd)); pStmt.setString(2, theString.substring(0, i)); count += pStmt.executeUpdate(); } assertTrue(count == rowsToAdd); cx.commit(); } rs = stmt.executeQuery("select s, i from #t0010"); count = 0; while (rs.next()) { count++; int i = rs.getInt(2); if (i > rowsToAdd) i -= rowsToAdd; assertTrue(rs.getString(1).trim().length() == i); } assertTrue(count == (2 * rowsToAdd)); cx.commit(); cx.setAutoCommit(true); } | public void load() throws IOException { File file = new File(filename); URL url = file.toURI().toURL(); Properties temp = new Properties(); temp.load(url.openStream()); if (temp.getProperty("Width") != null) try { width = Integer.valueOf(temp.getProperty("Width")); } catch (Exception e) { System.out.println("Error loading Calibration Sheet Width - leaving as default: " + e); } if (temp.getProperty("Height") != null) try { height = Integer.valueOf(temp.getProperty("Height")); } catch (Exception e) { System.out.println("Error loading Calibration Sheet Height - leaving as default: " + e); } if (temp.getProperty("CircleRadius") != null) try { circleradius = Double.valueOf(temp.getProperty("CircleRadius")); } catch (Exception e) { System.out.println("Error loading Calibration Sheet Circle Radius - leaving as default: " + e); } ArrayList<Ellipse> calibrationcircleslist = new ArrayList<Ellipse>(); int i = 0; while ((temp.getProperty("Circle" + i + "CenterX") != null) && (temp.getProperty("Circle" + i + "CenterY") != null)) { Point2d circlecenter = new Point2d(0, 0); circlecenter.x = Double.valueOf(temp.getProperty("Circle" + i + "CenterX")); circlecenter.y = Double.valueOf(temp.getProperty("Circle" + i + "CenterY")); Ellipse element = new Ellipse(circlecenter, circleradius, circleradius, 0); calibrationcircleslist.add(element); i++; } calibrationcircles = new Ellipse[0]; calibrationcircles = calibrationcircleslist.toArray(calibrationcircles); } | 14,752 |
1 | public String getData() throws ValueFormatException, RepositoryException, IOException { InputStream is = getStream(); StringWriter sw = new StringWriter(); IOUtils.copy(is, sw, "UTF-8"); IOUtils.closeQuietly(is); return sw.toString(); } | public static void copyFile(File in, File out) throws FileNotFoundException, IOException { FileChannel sourceChannel = null; FileChannel destinationChannel = null; try { sourceChannel = new FileInputStream(in).getChannel(); destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); } finally { try { sourceChannel.close(); } catch (Exception ex) { } try { destinationChannel.close(); } catch (Exception ex) { } } } | 14,753 |
1 | public static String digest(String algorithm, String text) { MessageDigest mDigest = null; try { mDigest = MessageDigest.getInstance(algorithm); mDigest.update(text.getBytes(ENCODING)); } catch (NoSuchAlgorithmException nsae) { Logger.error(Encryptor.class, nsae.getMessage(), nsae); } catch (UnsupportedEncodingException uee) { Logger.error(Encryptor.class, uee.getMessage(), uee); } byte raw[] = mDigest.digest(); return (new BASE64Encoder()).encode(raw); } | public static void processString(String text) throws Exception { MessageDigest md5 = MessageDigest.getInstance(MD5_DIGEST); md5.reset(); md5.update(text.getBytes()); displayResult(null, md5.digest()); } | 14,754 |
1 | public static void main(String[] args) throws IOException { if (args.length == 0) { System.out.println("Usage: \nGZIPcompress file\n" + "\tUses GZIP compression to compress " + "the file to test.gz"); System.exit(1); } BufferedReader in = new BufferedReader(new FileReader(args[0])); BufferedOutputStream out = new BufferedOutputStream(new GZIPOutputStream(new FileOutputStream("test.gz"))); System.out.println("Writing file"); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); System.out.println("Reading file"); BufferedReader in2 = new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream("test.gz")))); String s; while ((s = in2.readLine()) != null) System.out.println(s); } | public String storeUploadedZip(byte[] zip, String name) { List filesToStore = new ArrayList(); int i = 0; ZipInputStream zipIs = new ZipInputStream(new ByteArrayInputStream(zip)); ZipEntry zipEntry = zipIs.getNextEntry(); while (zipEntry != null) { if (zipEntry.isDirectory() == false) { i++; ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(zipIs, baos); baos.close(); } zipIs.closeEntry(); zipEntry = zipIs.getNextEntry(); } } | 14,755 |
0 | public static void main(String[] argz) { int X, Y, Z; X = 256; Y = 256; Z = 256; try { String work_folder = "C:\\Documents and Settings\\Entheogen\\My Documents\\school\\jung\\vol_data\\CT_HEAD3"; FileOutputStream out_stream = new FileOutputStream(new File(work_folder + "\\converted.dat")); FileChannel out = out_stream.getChannel(); String f_name = "head256.raw"; File file = new File(work_folder + "\\" + f_name); FileChannel in = new FileInputStream(file).getChannel(); ByteBuffer buffa = BufferUtil.newByteBuffer((int) file.length()); in.read(buffa); in.close(); int N = 256; FloatBuffer output_data = BufferUtil.newFloatBuffer(N * N * N); float min = Float.MAX_VALUE; for (int i = 0, j = 0; i < buffa.capacity(); i++, j++) { byte c = buffa.get(i); min = Math.min(min, (float) (c)); output_data.put((float) (c)); } for (int i = 0; i < Y - X; ++i) { for (int j = 0; j < Y; ++j) { for (int k = 0; k < Z; ++k) { output_data.put(min); } } } output_data.rewind(); System.out.println("size of output_data = " + Integer.toString(output_data.capacity())); out.write(BufferUtil.copyFloatBufferAsByteBuffer(output_data)); ByteBuffer buffa2 = BufferUtil.newByteBuffer(2); buffa2.put((byte) '.'); out.close(); } catch (Exception exc) { exc.printStackTrace(); } } | public static String getResourceFromURL(URL url, String acceptHeader) throws java.io.IOException { HttpURLConnection urlConnection = (HttpURLConnection) url.openConnection(); urlConnection.setUseCaches(false); urlConnection.setRequestProperty("Accept", acceptHeader); urlConnection.setInstanceFollowRedirects(true); BufferedReader input = new BufferedReader(new InputStreamReader(urlConnection.getInputStream())); String content = ""; String line; while ((line = input.readLine()) != null) { content += line; } input.close(); return content; } | 14,756 |
1 | protected String getTextResponse(String address, boolean ignoreResponseCode) throws Exception { URL url = new URL(address); HttpURLConnection con = (HttpURLConnection) url.openConnection(); con.setUseCaches(false); BufferedReader in = null; try { con.connect(); if (!ignoreResponseCode) { assertEquals(HttpURLConnection.HTTP_OK, con.getResponseCode()); } in = new BufferedReader(new InputStreamReader(con.getInputStream())); StringBuilder builder = new StringBuilder(); String inputLine = null; while ((inputLine = in.readLine()) != null) { builder.append(inputLine); } return builder.toString(); } finally { if (in != null) { in.close(); } con.disconnect(); } } | public LinkedList<NameValuePair> getScoreboard() { InputStream is = null; String result = ""; LinkedList<NameValuePair> scores = new LinkedList<NameValuePair>(); try { HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost(domain); httppost.setEntity(new UrlEncodedFormEntity(library)); HttpResponse response = httpclient.execute(httppost); HttpEntity entity = response.getEntity(); is = entity.getContent(); } catch (Exception e) { Log.e("log_tag", "Error in http connection " + e.toString()); } try { BufferedReader reader = new BufferedReader(new InputStreamReader(is, "iso-8859-1"), 8); StringBuilder sb = new StringBuilder(); String line = null; while ((line = reader.readLine()) != null) { sb.append(line + ","); } is.close(); result = sb.toString(); if (result.equals("null,")) { return null; } } catch (Exception e) { Log.e("log_tag", "Error converting result " + e.toString()); } try { JSONObject json = new JSONObject(result); JSONArray data = json.getJSONArray("data"); JSONArray me = json.getJSONArray("me"); for (int i = 0; i < data.length(); i++) { JSONObject single = data.getJSONObject(i); String uid = single.getString("uid"); String score = single.getString("score"); scores.add(new BasicNameValuePair(uid, score)); } for (int i = 0; i < me.length(); i++) { JSONObject single = me.getJSONObject(i); String uid = single.getString("uid"); String score = single.getString("score"); scores.add(new BasicNameValuePair(uid, score)); } System.out.println(json); } catch (JSONException e) { Log.e("log_tag", "Error parsing data " + e.toString()); } return scores; } | 14,757 |
0 | public void checkAndDownload(String statsUrl, RDFStatsUpdatableModelExt stats, Date lastDownload, boolean onlyIfNewer) throws DataSourceMonitorException { if (log.isInfoEnabled()) log.info("Checking if update required for statistics of " + ds + "..."); HttpURLConnection urlConnection; try { URL url = new URL(statsUrl); urlConnection = (HttpURLConnection) url.openConnection(); urlConnection.setConnectTimeout(CONNECT_TIMEOUT); urlConnection.setReadTimeout(READ_TIMEOUT); int statusCode = urlConnection.getResponseCode(); if (statusCode / 100 != 2) { String msg = urlConnection.getResponseMessage(); throw new DataSourceMonitorException(statsUrl + " returned HTTP " + statusCode + (msg != null ? msg : "") + "."); } } catch (Exception e) { throw new DataSourceMonitorException("Failed to connect to " + statsUrl + ".", e); } long lastModified = urlConnection.getLastModified(); boolean newer = lastDownload == null || lastModified == 0 || lastModified - TIMING_GAP > lastDownload.getTime(); if (newer || !onlyIfNewer) { Model newStats = retrieveModelData(urlConnection, ds); Date retrievedTimestamp = Calendar.getInstance().getTime(); Date modifiedTimestamp = (urlConnection.getLastModified() > 0) ? new Date(urlConnection.getLastModified()) : null; if (log.isInfoEnabled()) log.info("Attempt to import up-to-date " + ((modifiedTimestamp != null) ? "(from " + modifiedTimestamp + ") " : "") + "statistics for " + ds + "."); try { if (stats.updateFrom(RDFStatsModelFactory.create(newStats), onlyIfNewer)) stats.setLastDownload(ds.getSPARQLEndpointURL(), retrievedTimestamp); } catch (Exception e) { throw new DataSourceMonitorException("Failed to import statistics and set last download for " + ds + ".", e); } } else { if (log.isInfoEnabled()) log.info("Statistics for " + ds + " are up-to-date" + ((lastDownload != null) ? " (" + lastDownload + ")" : "")); } } | public static Document getDocument(URL url, boolean validate) throws QTIParseException { try { return getDocument(new InputSource(url.openStream()), validate, null); } catch (IOException ex) { throw new QTIParseException(ex); } } | 14,758 |
1 | private static void processFile(String file) throws IOException { FileInputStream in = new FileInputStream(file); int read = 0; byte[] buf = new byte[2048]; ByteArrayOutputStream bout = new ByteArrayOutputStream(); while ((read = in.read(buf)) > 0) bout.write(buf, 0, read); in.close(); String converted = bout.toString().replaceAll("@project.name@", projectNameS).replaceAll("@base.package@", basePackageS).replaceAll("@base.dir@", baseDir).replaceAll("@webapp.dir@", webAppDir).replaceAll("path=\"target/classes\"", "path=\"src/main/webapp/WEB-INF/classes\""); FileOutputStream out = new FileOutputStream(file); out.write(converted.getBytes()); out.close(); } | @Override protected void write(InputStream in, OutputStream out, javax.sound.sampled.AudioFormat javaSoundFormat) throws IOException { if (USE_JAVASOUND) { super.write(in, out, javaSoundFormat); } else { try { byte[] header = JavaSoundCodec.createWavHeader(javaSoundFormat); if (header == null) throw new IOException("Unable to create wav header"); out.write(header); IOUtils.copyStream(in, out); } catch (InterruptedIOException e) { logger.log(Level.FINE, "" + e, e); throw e; } catch (IOException e) { logger.log(Level.WARNING, "" + e, e); throw e; } } } | 14,759 |
0 | private ArrayList execAtParentServer(ArrayList paramList) throws Exception { ArrayList outputList = null; String message = ""; try { HashMap serverUrlMap = InitXml.getInstance().getServerMap(); Iterator it = serverUrlMap.keySet().iterator(); while (it.hasNext()) { String server = (String) it.next(); String serverUrl = (String) serverUrlMap.get(server); serverUrl = serverUrl + Primer3Manager.servletName; URL url = new URL(serverUrl); URLConnection uc = url.openConnection(); uc.setDoOutput(true); OutputStream os = uc.getOutputStream(); StringBuffer buf = new StringBuffer(); buf.append("actionType=designparent"); for (int i = 0; i < paramList.size(); i++) { Primer3Param param = (Primer3Param) paramList.get(i); if (i == 0) { buf.append("&sequence=" + param.getSequence()); buf.append("&upstream_size" + upstreamSize); buf.append("&downstreamSize" + downstreamSize); buf.append("&MARGIN_LENGTH=" + marginLength); buf.append("&OVERLAP_LENGTH=" + overlapLength); buf.append("&MUST_XLATE_PRODUCT_MIN_SIZE=" + param.getPrimerProductMinSize()); buf.append("&MUST_XLATE_PRODUCT_MAX_SIZE=" + param.getPrimerProductMaxSize()); buf.append("&PRIMER_PRODUCT_OPT_SIZE=" + param.getPrimerProductOptSize()); buf.append("&PRIMER_MAX_END_STABILITY=" + param.getPrimerMaxEndStability()); buf.append("&PRIMER_MAX_MISPRIMING=" + param.getPrimerMaxMispriming()); buf.append("&PRIMER_PAIR_MAX_MISPRIMING=" + param.getPrimerPairMaxMispriming()); buf.append("&PRIMER_MIN_SIZE=" + param.getPrimerMinSize()); buf.append("&PRIMER_OPT_SIZE=" + param.getPrimerOptSize()); buf.append("&PRIMER_MAX_SIZE=" + param.getPrimerMaxSize()); buf.append("&PRIMER_MIN_TM=" + param.getPrimerMinTm()); buf.append("&PRIMER_OPT_TM=" + param.getPrimerOptTm()); buf.append("&PRIMER_MAX_TM=" + param.getPrimerMaxTm()); buf.append("&PRIMER_MAX_DIFF_TM=" + param.getPrimerMaxDiffTm()); buf.append("&PRIMER_MIN_GC=" + param.getPrimerMinGc()); buf.append("&PRIMER_OPT_GC_PERCENT=" + param.getPrimerOptGcPercent()); buf.append("&PRIMER_MAX_GC=" + param.getPrimerMaxGc()); buf.append("&PRIMER_SELF_ANY=" + param.getPrimerSelfAny()); buf.append("&PRIMER_SELF_END=" + param.getPrimerSelfEnd()); buf.append("&PRIMER_NUM_NS_ACCEPTED=" + param.getPrimerNumNsAccepted()); buf.append("&PRIMER_MAX_POLY_X=" + param.getPrimerMaxPolyX()); buf.append("&PRIMER_GC_CLAMP=" + param.getPrimerGcClamp()); } buf.append("&target=" + param.getPrimerSequenceId() + "," + (param.getTarget())[0] + "," + (param.getTarget())[1]); } PrintStream ps = new PrintStream(os); ps.print(buf.toString()); ps.close(); ObjectInputStream ois = new ObjectInputStream(uc.getInputStream()); outputList = (ArrayList) ois.readObject(); ois.close(); } } catch (IOException e1) { e1.printStackTrace(); } if ((outputList == null || outputList.size() == 0) && message != null && message.length() > 0) { throw new Exception(message); } return outputList; } | public static String encryptPassword(String password) { String hash = null; try { MessageDigest md = null; md = MessageDigest.getInstance("SHA"); md.update(password.getBytes("UTF-8")); byte raw[] = md.digest(); hash = Base64.encode(raw, false); } catch (Exception e) { } return hash; } | 14,760 |
0 | private void createPolicy(String policyName) throws SPLException { URL url = getClass().getResource(policyName + ".spl"); StringBuffer contents = new StringBuffer(); try { BufferedReader input = new BufferedReader(new InputStreamReader(url.openStream())); String line = null; while ((line = input.readLine()) != null) { contents.append(line); contents.append(System.getProperty("line.separator")); } input.close(); System.out.println(policyName); System.out.println(contents.toString()); boolean createReturn = jspl.createPolicy(policyName, contents.toString()); System.out.println("Policy Created : " + policyName + " - " + createReturn); System.out.println(""); } catch (IOException ex) { ex.printStackTrace(); } } | public boolean receiveFile(FileDescriptor fileDescriptor) { try { byte[] block = new byte[1024]; int sizeRead = 0; int totalRead = 0; File dir = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation()); if (!dir.exists()) { dir.mkdirs(); } File file = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation() + fileDescriptor.getName()); if (!file.exists()) { file.createNewFile(); } SSLSocket sslsocket = getFileTransferConectionConnectMode(ServerAdress.getServerAdress()); OutputStream fileOut = new FileOutputStream(file); InputStream dataIn = sslsocket.getInputStream(); while ((sizeRead = dataIn.read(block)) >= 0) { totalRead += sizeRead; fileOut.write(block, 0, sizeRead); propertyChangeSupport.firePropertyChange("fileByte", 0, totalRead); } fileOut.close(); dataIn.close(); sslsocket.close(); if (fileDescriptor.getName().contains(".snapshot")) { try { File fileData = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation() + fileDescriptor.getName()); File dirData = new File(Constants.PREVAYLER_DATA_DIRETORY + Constants.FILE_SEPARATOR); File destino = new File(dirData, fileData.getName()); boolean success = fileData.renameTo(destino); if (!success) { deleteDir(Constants.DOWNLOAD_DIR); return false; } deleteDir(Constants.DOWNLOAD_DIR); } catch (Exception e) { e.printStackTrace(); } } else { if (Server.isServerOpen()) { FileChannel inFileChannel = new FileInputStream(file).getChannel(); File dirServer = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation()); if (!dirServer.exists()) { dirServer.mkdirs(); } File fileServer = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getName()); if (!fileServer.exists()) { fileServer.createNewFile(); } inFileChannel.transferTo(0, inFileChannel.size(), new FileOutputStream(fileServer).getChannel()); inFileChannel.close(); } } if (totalRead == fileDescriptor.getSize()) { return true; } } catch (Exception e) { logger.error("Receive File:", e); } return false; } | 14,761 |
0 | public String grabId(String itemName) throws Exception { StringBuffer modified = new StringBuffer(itemName); for (int i = 0; i <= modified.length() - 1; i++) { char ichar = modified.charAt(i); if (ichar == ' ') modified = modified.replace(i, i + 1, "+"); } itemName = modified.toString(); try { URL url = new URL(searchURL + itemName); InputStream urlStream = url.openStream(); BufferedReader reader = new BufferedReader(new InputStreamReader(urlStream, "UTF-8")); while (reader.ready()) { String htmlLine = reader.readLine(); int indexOfSearchStart = htmlLine.indexOf(searchForItemId); if (indexOfSearchStart != -1) { int idStart = htmlLine.indexOf("=", indexOfSearchStart); idStart++; int idEnd = htmlLine.indexOf("'", idStart); id = htmlLine.substring(idStart, idEnd); } } if (id == "") return null; else return id; } catch (Exception ex) { System.out.println("Exception in lookup: " + ex); throw (ex); } } | @Override public void run() { while (true) { StringBuilder buffer = new StringBuilder(128); buffer.append("insert into DOMAIN ( ").append(LS); buffer.append(" DOMAIN_ID, TOP_DOMAIN_ID, DOMAIN_HREF, ").append(LS); buffer.append(" DOMAIN_RANK, DOMAIN_TYPE, DOMAIN_STATUS, ").append(LS); buffer.append(" DOMAIN_ICO_CREATED, DOMAIN_CDATE ").append(LS); buffer.append(") values ( ").append(LS); buffer.append(" null ,null, ?,").append(LS); buffer.append(" 1, 2, 1, ").append(LS); buffer.append(" 0, now() ").append(LS); buffer.append(") ").append(LS); String sqlInsert = buffer.toString(); boolean isAutoCommit = false; int i = 0; Connection conn = null; PreparedStatement pstmt = null; ResultSet rs = null; try { conn = ConnHelper.getConnection(); conn.setAutoCommit(isAutoCommit); pstmt = conn.prepareStatement(sqlInsert); for (i = 0; i < 10; i++) { String lock = "" + ((int) (Math.random() * 100000000)) % 100; pstmt.setString(1, lock); pstmt.executeUpdate(); } if (!isAutoCommit) conn.commit(); rs = pstmt.executeQuery("select max(DOMAIN_ID) from DOMAIN"); if (rs.next()) { String str = System.currentTimeMillis() + " " + rs.getLong(1); } } catch (Exception e) { try { if (!isAutoCommit) conn.rollback(); } catch (SQLException ex) { ex.printStackTrace(System.out); } String msg = System.currentTimeMillis() + " " + Thread.currentThread().getName() + " - " + i + " " + e.getMessage() + LS; FileIO.writeToFile("D:/DEAD_LOCK.txt", msg, true, "GBK"); } finally { ConnHelper.close(conn, pstmt, rs); } } } | 14,762 |
1 | public static boolean installMetricsCfg(Db db, String xmlFileName) throws Exception { String xmlText = FileHelper.asString(xmlFileName); Bundle bundle = new Bundle(); loadMetricsCfg(bundle, xmlFileName, xmlText); try { db.begin(); PreparedStatement psExists = db.prepareStatement("SELECT e_bundle_id, xml_decl_path, xml_text FROM sdw.e_bundle WHERE xml_decl_path = ?;"); psExists.setString(1, xmlFileName); ResultSet rsExists = db.executeQuery(psExists); if (rsExists.next()) { db.rollback(); return false; } PreparedStatement psId = db.prepareStatement("SELECT currval('sdw.e_bundle_serial');"); PreparedStatement psAdd = db.prepareStatement("INSERT INTO sdw.e_bundle (xml_decl_path, xml_text, sdw_major_version, sdw_minor_version, file_major_version, file_minor_version) VALUES (?, ?, ?, ?, ?, ?);"); psAdd.setString(1, xmlFileName); psAdd.setString(2, xmlText); FileInformation fi = bundle.getSingleFileInformation(); if (!xmlFileName.equals(fi.filename)) throw new IllegalStateException("FileInformation bad for " + xmlFileName); psAdd.setInt(3, Globals.SDW_MAJOR_VER); psAdd.setInt(4, Globals.SDW_MINOR_VER); psAdd.setInt(5, fi.majorVer); psAdd.setInt(6, fi.minorVer); if (1 != db.executeUpdate(psAdd)) { throw new IllegalStateException("Could not add " + xmlFileName); } int bundleId = DbHelper.getIntKey(psId); PreparedStatement psGroupId = db.prepareStatement("SELECT currval('sdw.e_metric_group_serial');"); PreparedStatement psAddGroup = db.prepareStatement("INSERT INTO sdw.e_metric_group (bundle_id, metric_group_name) VALUES (?, ?);"); psAddGroup.setInt(1, bundleId); PreparedStatement psMetricId = db.prepareStatement("SELECT currval('sdw.e_metric_name_serial');"); PreparedStatement psAddMetric = db.prepareStatement("INSERT INTO sdw.e_metric_name (bundle_id, metric_name) VALUES (?, ?);"); psAddMetric.setInt(1, bundleId); PreparedStatement psAddGroup2Metric = db.prepareStatement("INSERT INTO sdw.e_metric_groups (metric_name_id, metric_group_id) VALUES (?, ?);"); Iterator<MetricGroup> i = bundle.getAllMetricGroups(); while (i.hasNext()) { MetricGroup grp = i.next(); psAddGroup.setString(2, grp.groupName); if (1 != db.executeUpdate(psAddGroup)) throw new IllegalStateException("Could not add group " + grp.groupName + " from " + xmlFileName); int groupId = DbHelper.getIntKey(psGroupId); psAddGroup2Metric.setInt(2, groupId); Iterator<String> j = grp.getAllMetricNames(); while (j.hasNext()) { String metricName = j.next(); psAddMetric.setString(2, metricName); if (1 != db.executeUpdate(psAddMetric)) throw new IllegalStateException("Could not add " + metricName + " from " + xmlFileName); int metricId = DbHelper.getIntKey(psMetricId); psAddGroup2Metric.setInt(1, metricId); if (1 != db.executeUpdate(psAddGroup2Metric)) throw new IllegalStateException("Could not add group " + grp.groupName + " -> " + metricName + " from " + xmlFileName); } } return true; } catch (Exception e) { db.rollback(); throw e; } finally { db.commitUnless(); } } | private void runUpdate(String sql, boolean transactional) { log().info("Vacuumd executing statement: " + sql); Connection dbConn = null; boolean commitRequired = false; boolean autoCommitFlag = !transactional; try { dbConn = getDataSourceFactory().getConnection(); dbConn.setAutoCommit(autoCommitFlag); PreparedStatement stmt = dbConn.prepareStatement(sql); int count = stmt.executeUpdate(); stmt.close(); if (log().isDebugEnabled()) { log().debug("Vacuumd: Ran update " + sql + ": this affected " + count + " rows"); } commitRequired = transactional; } catch (SQLException ex) { log().error("Vacuumd: Database error execuating statement " + sql, ex); } finally { if (dbConn != null) { try { if (commitRequired) { dbConn.commit(); } else if (transactional) { dbConn.rollback(); } } catch (SQLException ex) { } finally { if (dbConn != null) { try { dbConn.close(); } catch (Exception e) { } } } } } } | 14,763 |
0 | public void include(String href) throws ProteuException { try { if (href.toLowerCase().startsWith("http://")) { java.net.URLConnection urlConn = (new java.net.URL(href)).openConnection(); Download.sendInputStream(this, urlConn.getInputStream()); } else { requestHead.set("JCN_URL_INCLUDE", href); Url.build(this); } } catch (ProteuException pe) { throw pe; } catch (Throwable t) { logger.error("Include", t); throw new ProteuException(t.getMessage(), t); } } | public static String getSSHADigest(String password, String salt) { String digest = null; MessageDigest sha = null; try { sha = MessageDigest.getInstance("SHA-1"); sha.reset(); sha.update(password.getBytes()); sha.update(salt.getBytes()); byte[] pwhash = sha.digest(); digest = "{SSHA}" + new String(Base64.encode(concatenate(pwhash, salt.getBytes()))); } catch (NoSuchAlgorithmException nsae) { CofaxToolsUtil.log("Algorithme SHA-1 non supporte a la creation du hashage" + nsae + id); } return digest; } | 14,764 |
0 | public void copiarMidias(final File vidDir, final File imgDir) { for (int i = 0; i < getMidias().size(); i++) { try { FileChannel src = new FileInputStream(getMidias().get(i).getUrl().trim()).getChannel(); FileChannel dest; if (getMidias().get(i).getTipo().equals("video")) { FileChannel vidDest = new FileOutputStream(vidDir + "/" + processaString(getMidias().get(i).getTitulo()) + "." + retornaExtensaoMidia(getMidias().get(i))).getChannel(); dest = vidDest; } else { FileChannel midDest = new FileOutputStream(imgDir + "/" + processaString(getMidias().get(i).getTitulo()) + "." + retornaExtensaoMidia(getMidias().get(i))).getChannel(); dest = midDest; } dest.transferFrom(src, 0, src.size()); src.close(); dest.close(); } catch (Exception e) { System.err.print(e.getMessage()); e.printStackTrace(); } } } | public RandomAccessFileOrArray(URL url) throws IOException { InputStream is = url.openStream(); try { this.arrayIn = InputStreamToArray(is); } finally { try { is.close(); } catch (IOException ioe) { } } } | 14,765 |
1 | public void removeExifTag(File jpegImageFile, File dst) throws IOException, ImageReadException, ImageWriteException { OutputStream os = null; try { TiffOutputSet outputSet = null; IImageMetadata metadata = Sanselan.getMetadata(jpegImageFile); JpegImageMetadata jpegMetadata = (JpegImageMetadata) metadata; if (null != jpegMetadata) { TiffImageMetadata exif = jpegMetadata.getExif(); if (null != exif) { outputSet = exif.getOutputSet(); } } if (null == outputSet) { IOUtils.copyFileNio(jpegImageFile, dst); return; } { outputSet.removeField(TiffConstants.EXIF_TAG_APERTURE_VALUE); TiffOutputDirectory exifDirectory = outputSet.getExifDirectory(); if (null != exifDirectory) exifDirectory.removeField(TiffConstants.EXIF_TAG_APERTURE_VALUE); } os = new FileOutputStream(dst); os = new BufferedOutputStream(os); new ExifRewriter().updateExifMetadataLossless(jpegImageFile, os, outputSet); os.close(); os = null; } finally { if (os != null) try { os.close(); } catch (IOException e) { } } } | @Override protected final void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { if (beforeServingFile(req, resp)) { String pathInfo = req.getPathInfo(); Validate.notNull(pathInfo, "the path info is null -> the sevlet should be mapped with /<mapping>/*"); String resurouce = pathInfo.substring(1); if (log.isDebugEnabled()) { log.debug("resource to expose: " + resurouce); } String extension = resurouce.substring(resurouce.lastIndexOf('.') + 1); MimeType mimeType = MimeTypeRegistry.getByExtension(extension); Validate.notNull(mimeType, "no mimetype found for extension: " + extension); if (log.isDebugEnabled()) { log.debug("the mime type to set: " + mimeType.getMimeType()); } File f = new File(mappedFolder, resurouce); Validate.isTrue(f.exists(), "file: " + f + " does not exist"); Validate.isTrue(f.canRead(), "can not read the file: " + f); if (log.isDebugEnabled()) { log.debug("exposing the file: " + f); } resp.setContentType(mimeType.getMimeType()); FileInputStream fis = new FileInputStream(f); ServletOutputStream os = resp.getOutputStream(); IOUtils.copy(fis, os); os.flush(); IOUtils.closeQuietly(fis); IOUtils.closeQuietly(os); } } | 14,766 |
0 | public static boolean update(Departamento objDepartamento) { int result = 0; Connection c = DBConnection.getConnection(); PreparedStatement pst = null; if (c == null) { return false; } try { c.setAutoCommit(false); String sql = "update departamento set nome = ?, sala = ?, telefone = ?, id_orgao = ? where id_departamento= ?"; pst = c.prepareStatement(sql); pst.setString(1, objDepartamento.getNome()); pst.setString(2, objDepartamento.getSala()); pst.setString(3, objDepartamento.getTelefone()); pst.setLong(4, (objDepartamento.getOrgao()).getCodigo()); pst.setInt(5, objDepartamento.getCodigo()); result = pst.executeUpdate(); c.commit(); } catch (SQLException e) { try { c.rollback(); } catch (SQLException e1) { e1.printStackTrace(); } System.out.println("[DepartamentoDAO.update] Erro ao atualizar -> " + e.getMessage()); } finally { DBConnection.closePreparedStatement(pst); DBConnection.closeConnection(c); } if (result > 0) { return true; } else { return false; } } | public static boolean copyFile(String fromfile, String tofile) { File from = new File(fromfile); File to = new File(tofile); if (!from.exists()) return false; if (to.exists()) { log.error(tofile + "exists already"); return false; } BufferedInputStream in = null; BufferedOutputStream out = null; FileInputStream fis = null; FileOutputStream ois = null; boolean flag = true; try { to.createNewFile(); fis = new FileInputStream(from); ois = new FileOutputStream(to); in = new BufferedInputStream(fis); out = new BufferedOutputStream(ois); byte[] buf = new byte[2048]; int readBytes = 0; while ((readBytes = in.read(buf, 0, buf.length)) != -1) { out.write(buf, 0, readBytes); } } catch (IOException e) { log.error(e); flag = false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { log.error(e); flag = false; } } return flag; } | 14,767 |
0 | private static MapEntry<String, Properties> loadFpmConf() throws ConfigurationReadException { MapEntry<String, Properties> ret = null; Scanner sc = new Scanner(CONF_PATHS).useDelimiter(SEP_P); String prev = ""; while (sc.hasNext() && !hasLoaded) { Properties fpmConf = null; boolean relative = false; String path = sc.next(); if (path.startsWith(PREV_P)) { path = path.replace(PREV_P, prev.substring(0, prev.length() - 1)); } else if (path.startsWith(REL_P)) { path = path.replace(REL_P + FS, ""); relative = true; } else if (path.contains(HOME_P)) { path = path.replace(HOME_P, USER_HOME); } prev = path; path = path.concat(MAIN_CONF_FILE); try { InputStream is = null; if (relative) { is = ClassLoader.getSystemResourceAsStream(path); path = getSystemConfDir(); Strings.getOne().createPath(path); path += MAIN_CONF_FILE; FileOutputStream os = new FileOutputStream(path); IOUtils.copy(is, os); os.flush(); os.close(); os = null; } else { is = new FileInputStream(path); } fpmConf = new Properties(); fpmConf.load(is); if (fpmConf.isEmpty()) { throw new ConfigurationReadException(); } ret = new MapEntry<String, Properties>(path, fpmConf); hasLoaded = true; } catch (FileNotFoundException e) { fpmConf = null; singleton = null; hasLoaded = false; } catch (IOException e) { throw new ConfigurationReadException(); } } return ret; } | public boolean performFinish() { try { IJavaProject javaProject = JavaCore.create(getProject()); final IProjectDescription projectDescription = ResourcesPlugin.getWorkspace().newProjectDescription(projectPage.getProjectName()); projectDescription.setLocation(null); getProject().create(projectDescription, null); List<IClasspathEntry> classpathEntries = new ArrayList<IClasspathEntry>(); projectDescription.setNatureIds(getNatures()); List<String> builderIDs = new ArrayList<String>(); addBuilders(builderIDs); ICommand[] buildCMDS = new ICommand[builderIDs.size()]; int i = 0; for (String builderID : builderIDs) { ICommand build = projectDescription.newCommand(); build.setBuilderName(builderID); buildCMDS[i++] = build; } projectDescription.setBuildSpec(buildCMDS); getProject().open(null); getProject().setDescription(projectDescription, null); addClasspaths(classpathEntries, getProject()); javaProject.setRawClasspath(classpathEntries.toArray(new IClasspathEntry[classpathEntries.size()]), null); javaProject.setOutputLocation(new Path("/" + projectPage.getProjectName() + "/bin"), null); createFiles(); return true; } catch (Exception exception) { StatusManager.getManager().handle(new Status(IStatus.ERROR, getPluginID(), "Problem creating " + getProjectTypeName() + " project. Ignoring.", exception)); try { getProject().delete(true, null); } catch (Exception e) { } return false; } } | 14,768 |
0 | public static String getMD5(String password) { MessageDigest md5; try { md5 = MessageDigest.getInstance("MD5"); md5.update(password.getBytes()); String pwd = new BigInteger(1, md5.digest()).toString(16); return pwd; } catch (Exception e) { logger.error(e.getMessage()); } return password; } | private void copyFile(File in, File out) throws IOException { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | 14,769 |
0 | @Override public String getFeedFeed(String sUrl) { try { URL url = new URL(sUrl); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String result = ""; String line; for (; (line = reader.readLine()) != null; result += line) { } reader.close(); return result; } catch (MalformedURLException e) { } catch (IOException e) { } return null; } | @SuppressWarnings("unchecked") private final D loadMeta(URL url) throws IOException { SAXParser saxParser; try { saxParser = SAX_PARSER_FACTORY.newSAXParser(); } catch (ParserConfigurationException e) { throw new Error(e); } catch (SAXException e) { throw new Error(e); } try { saxParser.setProperty("http://xml.org/sax/features/validation", false); } catch (SAXNotRecognizedException e) { e.printStackTrace(); } catch (SAXNotSupportedException e) { e.printStackTrace(); } MetaParser handler = new MetaParser(); try { saxParser.parse(url.openStream(), handler); } catch (SAXException e) { throw new ParsingException(e); } return ((D) handler.getMetaData()); } | 14,770 |
0 | public HttpResponse execute(HttpRequest request) throws IOException { this.request = request; buildParams(); String l = request.getUrl(); if (request instanceof HttpGet) { l = l + "?" + params; } URL url = new URL(l); conn = (HttpURLConnection) url.openConnection(); conn.setConnectTimeout(connectTimeout); conn.setReadTimeout(readTimeout); buildHeader(); if (request instanceof HttpPost) { sendRequest(); } readResponse(); return this.response; } | public void test_UseCache_HttpURLConnection_NoCached_GetOutputStream() throws Exception { ResponseCache.setDefault(new MockNonCachedResponseCache()); uc = (HttpURLConnection) url.openConnection(); uc.setChunkedStreamingMode(10); uc.setDoOutput(true); uc.getOutputStream(); assertTrue(isGetCalled); assertFalse(isPutCalled); assertFalse(isAbortCalled); uc.disconnect(); } | 14,771 |
0 | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | protected void setOuterIP() { try { URL url = new URL("http://elm-ve.sf.net/ipCheck/ipCheck.cgi"); InputStreamReader isr = new InputStreamReader(url.openStream()); BufferedReader br = new BufferedReader(isr); String ip = br.readLine(); ip = ip.trim(); bridgeOutIPTF.setText(ip); } catch (Exception e) { e.printStackTrace(); } } | 14,772 |
1 | private void copy(File source, File dest) throws IOException { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { close(in); close(out); } } | public static void main(String[] args) throws IOException, WrongFormatException, URISyntaxException { System.out.println(new URI("google.com.ua.css").toString()); Scanner scc = new Scanner(System.in); System.err.print(scc.nextLine().substring(1)); ServerSocket s = new ServerSocket(5354); while (true) { Socket client = s.accept(); InputStream iStream = client.getInputStream(); BufferedReader bf = new BufferedReader(new InputStreamReader(iStream)); String line = ""; while (!(line = bf.readLine()).equals("")) { System.out.println(line); } System.out.println("end of request"); new PrintWriter(client.getOutputStream()).println("hi"); bf.close(); } } | 14,773 |
1 | private void createJarArchive(File archiveFile, List<File> filesToBeJared, File base) throws Exception { FileOutputStream stream = new FileOutputStream(archiveFile); JarOutputStream out = new JarOutputStream(stream); for (File tobeJared : filesToBeJared) { if (tobeJared == null || !tobeJared.exists() || tobeJared.isDirectory()) continue; String entryName = tobeJared.getAbsolutePath().substring(base.getAbsolutePath().length() + 1).replace("\\", "/"); JarEntry jarEntry = new JarEntry(entryName); jarEntry.setTime(tobeJared.lastModified()); out.putNextEntry(jarEntry); FileInputStream in = new FileInputStream(tobeJared); IOUtils.copy(in, out); IOUtils.closeQuietly(in); out.closeEntry(); } out.close(); stream.close(); System.out.println("Generated file: " + archiveFile); } | public static String sendScripts(Session session) { Channel channel = null; String tempDirectory = ""; Logger.getLogger(RsyncHelper.class.getName()).log(Level.INFO, "Start sendScripts."); try { { channel = session.openChannel("exec"); final String command = "mktemp -d /tmp/scipionXXXXXXXX"; ((ChannelExec) channel).setCommand(command); InputStream in = channel.getInputStream(); channel.connect(); String[] result = inputStreamToString(in, channel); tempDirectory = result[1]; tempDirectory = tempDirectory.replaceAll("\n", ""); Logger.getLogger(RsyncHelper.class.getName()).log(Level.INFO, "status:" + result[0] + "-command:" + command + "-result:" + tempDirectory); IOUtils.closeQuietly(in); channel.disconnect(); } { channel = session.openChannel("exec"); final String command = "chmod 700 " + tempDirectory; ((ChannelExec) channel).setCommand(command); InputStream in = channel.getInputStream(); channel.connect(); String[] result = inputStreamToString(in, channel); Logger.getLogger(RsyncHelper.class.getName()).log(Level.INFO, "status:" + result[0] + "-command:" + command + "-result:" + result[1]); IOUtils.closeQuietly(in); channel.disconnect(); } { InputStream rsyncHelperContentInput = Thread.currentThread().getContextClassLoader().getResourceAsStream("scripts/" + RSYNC_HELPER_SCRIPT); channel = session.openChannel("exec"); final String command = "cat > " + tempDirectory + "/" + RSYNC_HELPER_SCRIPT; ((ChannelExec) channel).setCommand(command); OutputStream out = channel.getOutputStream(); channel.connect(); IOUtils.copy(rsyncHelperContentInput, out); IOUtils.closeQuietly(out); channel.disconnect(); } { channel = session.openChannel("exec"); final String command = "chmod 700 " + tempDirectory + "/" + RSYNC_HELPER_SCRIPT; ((ChannelExec) channel).setCommand(command); InputStream in = channel.getInputStream(); channel.connect(); String[] result = inputStreamToString(in, channel); Logger.getLogger(RsyncHelper.class.getName()).log(Level.INFO, "status:" + result[0] + "-command:" + command + "-result:" + result[1]); IOUtils.closeQuietly(in); channel.disconnect(); } { InputStream askPassContentInput = Thread.currentThread().getContextClassLoader().getResourceAsStream("scripts/" + RSYNC_ASKPASS_SCRIPT); channel = session.openChannel("exec"); final String command = "cat > " + tempDirectory + "/" + RSYNC_ASKPASS_SCRIPT; ((ChannelExec) channel).setCommand(command); OutputStream out = channel.getOutputStream(); channel.connect(); IOUtils.copy(askPassContentInput, out); IOUtils.closeQuietly(out); channel.disconnect(); } { channel = session.openChannel("exec"); final String command = "chmod 700 " + tempDirectory + "/" + RSYNC_ASKPASS_SCRIPT; ((ChannelExec) channel).setCommand(command); InputStream in = channel.getInputStream(); channel.connect(); String[] result = inputStreamToString(in, channel); Logger.getLogger(RsyncHelper.class.getName()).log(Level.INFO, "status:" + result[0] + "-command:" + command + "-result:" + result[1]); IOUtils.closeQuietly(in); channel.disconnect(); } } catch (IOException ex) { Logger.getLogger(RsyncHelper.class.getName()).log(Level.SEVERE, null, ex); } catch (JSchException ex) { Logger.getLogger(RsyncHelper.class.getName()).log(Level.SEVERE, null, ex); } Logger.getLogger(RsyncHelper.class.getName()).log(Level.INFO, "End sendScripts."); return tempDirectory; } | 14,774 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static final void main(String[] args) throws FileNotFoundException, IOException { ArrayList<String[]> result = new ArrayList<String[]>(); IStream is = new StreamImpl(); IOUtils.copy(new FileInputStream("H:\\7-项目预算表.xlsx"), is.getOutputStream()); int count = loadExcel(result, is, 0, 0, -1, 16, 1); System.out.println(count); for (String[] rs : result) { for (String r : rs) { System.out.print(r + "\t"); } System.out.println(); } } | 14,775 |
0 | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public Reader getConfResourceAsReader(String name) { try { URL url = getResource(name); if (url == null) { LOG.info(name + " not found"); return null; } else { LOG.info("found resource " + name + " at " + url); } return new InputStreamReader(url.openStream()); } catch (Exception e) { return null; } } | 14,776 |
0 | public String hash(String plainTextPassword) { try { MessageDigest digest = MessageDigest.getInstance(digestAlgorithm); digest.update(plainTextPassword.getBytes(charset)); byte[] rawHash = digest.digest(); return new String(org.jboss.seam.util.Hex.encodeHex(rawHash)); } catch (NoSuchAlgorithmException e) { log.error("Digest algorithm #0 to calculate the password hash will not be supported.", digestAlgorithm); throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { log.error("The Character Encoding #0 is not supported", charset); throw new RuntimeException(e); } } | public void store(Component component, String componentName, int currentPilot) { try { PreparedStatement psta = jdbc.prepareStatement("UPDATE component_prop " + "SET size_height = ?, size_width = ?, pos_x = ?, pos_y = ? " + "WHERE pilot_id = ? " + "AND component_name = ?"); psta.setInt(1, component.getHeight()); psta.setInt(2, component.getWidth()); Point point = component.getLocation(); psta.setInt(3, point.x); psta.setInt(4, point.y); psta.setInt(5, currentPilot); psta.setString(6, componentName); int update = psta.executeUpdate(); if (update == 0) { psta = jdbc.prepareStatement("INSERT INTO component_prop " + "(size_height, size_width, pos_x, pos_y, pilot_id, component_name) " + "VALUES (?,?,?,?,?,?)"); psta.setInt(1, component.getHeight()); psta.setInt(2, component.getWidth()); psta.setInt(3, point.x); psta.setInt(4, point.y); psta.setInt(5, currentPilot); psta.setString(6, componentName); psta.executeUpdate(); } jdbc.commit(); } catch (SQLException e) { jdbc.rollback(); log.debug(e); } } | 14,777 |
1 | public static void copy(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } } | public String doAdd(ActionMapping mapping, ActionForm form, HttpServletRequest request, HttpServletResponse response) throws Exception { UploadFileForm vo = (UploadFileForm) form; String review = request.getParameter("review"); String realpath = getServlet().getServletContext().getRealPath("/"); realpath = realpath.replaceAll("\\\\", "/"); String inforId = request.getParameter("inforId"); request.setAttribute("id", inforId); String str_postFIX = ""; int i_p = 0; if (null == review) { FormFile file = vo.getFile(); if (file != null) { String rootFilePath = getServlet().getServletContext().getRealPath(request.getContextPath()); rootFilePath = (new StringBuilder(String.valueOf(rootFilePath))).append(UploadFileOne.strPath).toString(); String strAppend = (new StringBuilder(String.valueOf(UUIDGenerator.nextHex()))).append(UploadFileOne.getFileType(file)).toString(); if (file.getFileSize() != 0) { file.getInputStream(); String name = file.getFileName(); i_p = file.getFileName().lastIndexOf("."); str_postFIX = file.getFileName().substring(i_p, file.getFileName().length()); String fullPath = realpath + "attach/" + strAppend + str_postFIX; t_attach attach = new t_attach(); attach.setAttach_fullname(fullPath); attach.setAttach_name(name); attach.setInfor_id(Integer.parseInt(inforId)); attach.setInsert_day(new Date()); attach.setUpdate_day(new Date()); t_attach_EditMap attachEdit = new t_attach_EditMap(); attachEdit.add(attach); File sysfile = new File(fullPath); if (!sysfile.exists()) { sysfile.createNewFile(); } java.io.OutputStream out = new FileOutputStream(sysfile); org.apache.commons.io.IOUtils.copy(file.getInputStream(), out); out.close(); } } request.setAttribute("operating-status", "�����ɹ�! ��ӭ����ʹ�á�"); return "editsave"; } else { String rootFilePath = getServlet().getServletContext().getRealPath(request.getContextPath()); rootFilePath = (new StringBuilder(String.valueOf(rootFilePath))).append(UploadFileOne.strPath).toString(); FormFile file = vo.getFile(); FormFile file2 = vo.getFile2(); FormFile file3 = vo.getFile3(); t_infor_review newreview = new t_infor_review(); String content = request.getParameter("content"); newreview.setContent(content); if (null != inforId) newreview.setInfor_id(Integer.parseInt(inforId)); newreview.setInsert_day(new Date()); UserDetails user = LoginUtils.getLoginUser(request); newreview.setCreate_name(user.getUsercode()); if (null != file.getFileName() && !"".equals(file.getFileName())) { newreview.setAttachname1(file.getFileName()); String strAppend1 = (new StringBuilder(String.valueOf(UUIDGenerator.nextHex()))).append(UploadFileOne.getFileType(file)).toString(); i_p = file.getFileName().lastIndexOf("."); str_postFIX = file.getFileName().substring(i_p, file.getFileName().length()); newreview.setAttachfullname1(realpath + "attach/" + strAppend1 + str_postFIX); saveFile(file.getInputStream(), realpath + "attach/" + strAppend1 + str_postFIX); } if (null != file2.getFileName() && !"".equals(file2.getFileName())) { newreview.setAttachname2(file2.getFileName()); String strAppend2 = (new StringBuilder(String.valueOf(UUIDGenerator.nextHex()))).append(UploadFileOne.getFileType(file)).toString(); i_p = file2.getFileName().lastIndexOf("."); str_postFIX = file2.getFileName().substring(i_p, file2.getFileName().length()); newreview.setAttachfullname2(realpath + "attach/" + strAppend2 + str_postFIX); saveFile(file2.getInputStream(), realpath + "attach/" + strAppend2 + str_postFIX); } if (null != file3.getFileName() && !"".equals(file3.getFileName())) { newreview.setAttachname3(file3.getFileName()); String strAppend3 = (new StringBuilder(String.valueOf(UUIDGenerator.nextHex()))).append(UploadFileOne.getFileType(file)).toString(); i_p = file3.getFileName().lastIndexOf("."); str_postFIX = file3.getFileName().substring(i_p, file3.getFileName().length()); newreview.setAttachfullname3(realpath + "attach/" + strAppend3 + str_postFIX); saveFile(file3.getInputStream(), realpath + "attach/" + strAppend3 + str_postFIX); } t_infor_review_EditMap reviewEdit = new t_infor_review_EditMap(); reviewEdit.add(newreview); request.setAttribute("review", "1"); return "aftersave"; } } | 14,778 |
0 | private static String deviceIdFromCombined_Device_ID(Context context) { StringBuilder builder = new StringBuilder(); builder.append(deviceIdFromIMEI(context)); builder.append(deviceIdFromPseudo_Unique_Id()); builder.append(deviceIdFromAndroidId(context)); builder.append(deviceIdFromWLAN_MAC_Address(context)); builder.append(deviceIdFromBT_MAC_Address(context)); String m_szLongID = builder.toString(); MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } m.update(m_szLongID.getBytes(), 0, m_szLongID.length()); byte p_md5Data[] = m.digest(); String m_szUniqueID = new String(); for (int i = 0; i < p_md5Data.length; i++) { int b = (0xFF & p_md5Data[i]); if (b <= 0xF) m_szUniqueID += "0"; m_szUniqueID += Integer.toHexString(b); } return m_szUniqueID; } | public static long toFile(final DigitalObject object, final File file) { try { FileOutputStream fOut = new FileOutputStream(file); long bytesCopied = IOUtils.copyLarge(object.getContent().getInputStream(), fOut); fOut.close(); return bytesCopied; } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return 0; } | 14,779 |
0 | public void loginOAuth() throws OAuthMessageSignerException, OAuthExpectationFailedException, OAuthCommunicationException, ClientProtocolException, IOException, IllegalStateException, SAXException, ParserConfigurationException, FactoryConfigurationError, AndroidException { String url = getAuthentificationURL(); HttpGet reqLogin = new HttpGet(url); consumer = new CommonsHttpOAuthConsumer(getConsumerKey(), getConsumerSecret()); consumer.sign(reqLogin); HttpClient httpClient = new DefaultHttpClient(); HttpResponse resLogin = httpClient.execute(reqLogin); if (resLogin.getEntity() == null) { throw new AuthRemoteException(); } Document document = DocumentBuilderFactory.newInstance().newDocumentBuilder().parse(resLogin.getEntity().getContent()); Element eOAuthToken = (Element) document.getElementsByTagName("oauth_token").item(0); if (eOAuthToken == null) { throw new AuthRemoteException(); } Node e = eOAuthToken.getFirstChild(); String sOAuthToken = e.getNodeValue(); System.out.println("token: " + sOAuthToken); Element eOAuthTokenSecret = (Element) document.getElementsByTagName("oauth_token_secret").item(0); if (eOAuthTokenSecret == null) { throw new AuthRemoteException(); } e = eOAuthTokenSecret.getFirstChild(); String sOAuthTokenSecret = e.getNodeValue(); System.out.println("Secret: " + sOAuthTokenSecret); consumer.setTokenWithSecret(sOAuthToken, sOAuthTokenSecret); } | public static Coordinate getCoordenadas(String RCoURL) { Coordinate coord = new Coordinate(); String pURL; String iniPC1 = "<pc1>"; String iniPC2 = "<pc2>"; String finPC1 = "</pc1>"; String finPC2 = "</pc2>"; String iniX = "<xcen>"; String iniY = "<ycen>"; String finX = "</xcen>"; String finY = "</ycen>"; String iniCuerr = "<cuerr>"; String finCuerr = "</cuerr>"; String iniDesErr = "<des>"; String finDesErr = "</des>"; boolean error = false; int ini, fin; if (RCoURL.contains("/") || RCoURL.contains("\\") || RCoURL.contains(".")) pURL = RCoURL; else { if (RCoURL.length() > 14) pURL = baseURL[1].replace("<RC>", RCoURL.substring(0, 14)); else pURL = baseURL[1].replace("<RC>", RCoURL); } try { URL url = new URL(pURL); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String str; while ((str = in.readLine()) != null) { if (str.contains(iniCuerr)) { ini = str.indexOf(iniCuerr) + iniCuerr.length(); fin = str.indexOf(finCuerr); if (Integer.parseInt(str.substring(ini, fin)) > 0) error = true; } if (error) { if (str.contains(iniDesErr)) { ini = str.indexOf(iniDesErr) + iniDesErr.length(); fin = str.indexOf(finDesErr); throw (new Exception(str.substring(ini, fin))); } } else { if (str.contains(iniPC1)) { ini = str.indexOf(iniPC1) + iniPC1.length(); fin = str.indexOf(finPC1); coord.setDescription(str.substring(ini, fin)); } if (str.contains(iniPC2)) { ini = str.indexOf(iniPC2) + iniPC2.length(); fin = str.indexOf(finPC2); coord.setDescription(coord.getDescription().concat(str.substring(ini, fin))); } if (str.contains(iniX)) { ini = str.indexOf(iniX) + iniX.length(); fin = str.indexOf(finX); coord.setLongitude(Double.parseDouble(str.substring(ini, fin))); } if (str.contains(iniY)) { ini = str.indexOf(iniY) + iniY.length(); fin = str.indexOf(finY); coord.setLatitude(Double.parseDouble(str.substring(ini, fin))); } } } in.close(); } catch (Exception e) { System.err.println(e); } return coord; } | 14,780 |
1 | public String parse(String queryText) throws ParseException { try { StringBuilder sb = new StringBuilder(); queryText = Val.chkStr(queryText); if (queryText.length() > 0) { URL url = new URL(getUrl(queryText)); InputStream in = url.openStream(); BufferedReader reader = new BufferedReader(new InputStreamReader(in)); String line = null; while ((line = reader.readLine()) != null) { if (sb.length() > 0) { sb.append("\r\n"); } sb.append(line); } } return sb.toString(); } catch (IOException ex) { throw new ParseException("Ontology parser is unable to parse term: \"" + queryText + "\" due to internal error: " + ex.getMessage()); } } | public String parse() { try { URL url = new URL(mUrl); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.setRequestMethod("GET"); connection.setDoOutput(true); connection.connect(); BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); String line; boolean flag1 = false; while ((line = reader.readLine()) != null) { line = line.trim(); if (!flag1 && line.contains("</center>")) flag1 = true; if (flag1 && line.contains("<br><center>")) break; if (flag1) { mText.append(line); } } } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return mText.toString(); } | 14,781 |
1 | public GEItem lookup(final String itemName) { try { URL url = new URL(GrandExchange.HOST + "/m=itemdb_rs/results.ws?query=" + itemName + "&price=all&members="); BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); String input; while ((input = br.readLine()) != null) { if (input.contains("<div id=\"search_results_text\">")) { input = br.readLine(); if (input.contains("Your search for")) { return null; } } else if (input.startsWith("<td><img src=")) { Matcher matcher = GrandExchange.PATTERN.matcher(input); if (matcher.find()) { if (matcher.group(2).contains(itemName)) { return lookup(Integer.parseInt(matcher.group(1))); } } } } } catch (IOException ignored) { } return null; } | private static List retrieveQuotes(Report report, Symbol symbol, TradingDate startDate, TradingDate endDate) throws ImportExportException { List quotes = new ArrayList(); String URLString = constructURL(symbol, startDate, endDate); EODQuoteFilter filter = new YahooEODQuoteFilter(symbol); PreferencesManager.ProxyPreferences proxyPreferences = PreferencesManager.loadProxySettings(); try { URL url = new URL(URLString); InputStreamReader input = new InputStreamReader(url.openStream()); BufferedReader bufferedInput = new BufferedReader(input); String line = bufferedInput.readLine(); while (line != null) { line = bufferedInput.readLine(); if (line != null) { try { EODQuote quote = filter.toEODQuote(line); quotes.add(quote); verify(report, quote); } catch (QuoteFormatException e) { report.addError(Locale.getString("YAHOO") + ":" + symbol + ":" + Locale.getString("ERROR") + ": " + e.getMessage()); } } } bufferedInput.close(); } catch (BindException e) { throw new ImportExportException(Locale.getString("UNABLE_TO_CONNECT_ERROR", e.getMessage())); } catch (ConnectException e) { throw new ImportExportException(Locale.getString("UNABLE_TO_CONNECT_ERROR", e.getMessage())); } catch (UnknownHostException e) { throw new ImportExportException(Locale.getString("UNKNOWN_HOST_ERROR", e.getMessage())); } catch (NoRouteToHostException e) { throw new ImportExportException(Locale.getString("DESTINATION_UNREACHABLE_ERROR", e.getMessage())); } catch (MalformedURLException e) { throw new ImportExportException(Locale.getString("INVALID_PROXY_ERROR", proxyPreferences.host, proxyPreferences.port)); } catch (FileNotFoundException e) { } catch (IOException e) { throw new ImportExportException(Locale.getString("ERROR_DOWNLOADING_QUOTES")); } return quotes; } | 14,782 |
0 | public OutputStream createOutputStream(URI uri, Map<?, ?> options) throws IOException { try { URL url = new URL(uri.toString()); final URLConnection urlConnection = url.openConnection(); urlConnection.setDoOutput(true); if (urlConnection instanceof HttpURLConnection) { final HttpURLConnection httpURLConnection = (HttpURLConnection) urlConnection; httpURLConnection.setRequestMethod("PUT"); return new FilterOutputStream(urlConnection.getOutputStream()) { @Override public void close() throws IOException { super.close(); int responseCode = httpURLConnection.getResponseCode(); switch(responseCode) { case HttpURLConnection.HTTP_OK: case HttpURLConnection.HTTP_CREATED: case HttpURLConnection.HTTP_NO_CONTENT: { break; } default: { throw new IOException("PUT failed with HTTP response code " + responseCode); } } } }; } else { OutputStream result = urlConnection.getOutputStream(); final Map<Object, Object> response = getResponse(options); if (response != null) { result = new FilterOutputStream(result) { @Override public void close() throws IOException { try { super.close(); } finally { response.put(URIConverter.RESPONSE_TIME_STAMP_PROPERTY, urlConnection.getLastModified()); } } }; } return result; } } catch (RuntimeException exception) { throw new Resource.IOWrappedException(exception); } } | protected void setUp() throws Exception { testOutputDirectory = new File(getClass().getResource("/").getPath()); zipFile = new File(this.testOutputDirectory, "/plugin.zip"); zipOutputDirectory = new File(this.testOutputDirectory, "zip"); zipOutputDirectory.mkdir(); logger.fine("zip dir created"); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(zipFile)); zos.putNextEntry(new ZipEntry("css/")); zos.putNextEntry(new ZipEntry("css/system.properties")); System.getProperties().store(zos, null); zos.closeEntry(); zos.putNextEntry(new ZipEntry("js/")); zos.putNextEntry(new ZipEntry("js/system.properties")); System.getProperties().store(zos, null); zos.closeEntry(); zos.putNextEntry(new ZipEntry("WEB-INF/")); zos.putNextEntry(new ZipEntry("WEB-INF/classes/")); zos.putNextEntry(new ZipEntry("WEB-INF/classes/system.properties")); System.getProperties().store(zos, null); zos.closeEntry(); zos.putNextEntry(new ZipEntry("WEB-INF/lib/")); zos.putNextEntry(new ZipEntry("WEB-INF/lib/mylib.jar")); File jarFile = new File(this.testOutputDirectory.getPath() + "/mylib.jar"); JarOutputStream jos = new JarOutputStream(new FileOutputStream(jarFile)); jos.putNextEntry(new ZipEntry("vqwiki/")); jos.putNextEntry(new ZipEntry("vqwiki/plugins/")); jos.putNextEntry(new ZipEntry("vqwiki/plugins/system.properties")); System.getProperties().store(jos, null); jos.closeEntry(); jos.close(); IOUtils.copy(new FileInputStream(jarFile), zos); zos.closeEntry(); zos.close(); jarFile.delete(); } | 14,783 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private void copyTemplateFile(String sourceRoot, String targetRoot, String extension) throws Exception { String inputFileName = sourceRoot + extension; String outputFileName = targetRoot + extension; System.out.println("Copying resource file: " + outputFileName); File inputFile = new File(inputFileName); if (!inputFile.exists() || !inputFile.canRead()) { throw new Exception("Could not read from the file " + inputFileName); } File outputFile = new File(outputFileName); if (!outputFile.exists()) { if (!outputFile.createNewFile() || !outputFile.canWrite()) throw new Exception("Could not write to the file " + outputFileName); } FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); try { char[] buffer = new char[1024]; int nread = 0; while ((nread = in.read(buffer)) != -1) { out.write(buffer, 0, nread); } } finally { in.close(); out.close(); } } | 14,784 |
1 | protected void copy(File source, File destination) throws IOException { final FileChannel inChannel = new FileInputStream(source).getChannel(); final FileChannel outChannel = new FileOutputStream(destination).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } finally { if (inChannel != null) { inChannel.close(); } if (outChannel != null) { outChannel.close(); } } } | private void addAuditDatastream() throws ObjectIntegrityException, StreamIOException { if (m_obj.getAuditRecords().size() == 0) { return; } String dsId = m_pid.toURI() + "/AUDIT"; String dsvId = dsId + "/" + DateUtility.convertDateToString(m_obj.getCreateDate()); Entry dsEntry = m_feed.addEntry(); dsEntry.setId(dsId); dsEntry.setTitle("AUDIT"); dsEntry.setUpdated(m_obj.getCreateDate()); dsEntry.addCategory(MODEL.STATE.uri, "A", null); dsEntry.addCategory(MODEL.CONTROL_GROUP.uri, "X", null); dsEntry.addCategory(MODEL.VERSIONABLE.uri, "false", null); dsEntry.addLink(dsvId, Link.REL_ALTERNATE); Entry dsvEntry = m_feed.addEntry(); dsvEntry.setId(dsvId); dsvEntry.setTitle("AUDIT.0"); dsvEntry.setUpdated(m_obj.getCreateDate()); ThreadHelper.addInReplyTo(dsvEntry, m_pid.toURI() + "/AUDIT"); dsvEntry.addCategory(MODEL.FORMAT_URI.uri, AUDIT1_0.uri, null); dsvEntry.addCategory(MODEL.LABEL.uri, "Audit Trail for this object", null); if (m_format.equals(ATOM_ZIP1_1)) { String name = "AUDIT.0.xml"; try { m_zout.putNextEntry(new ZipEntry(name)); Reader r = new StringReader(DOTranslationUtility.getAuditTrail(m_obj)); IOUtils.copy(r, m_zout, m_encoding); m_zout.closeEntry(); r.close(); } catch (IOException e) { throw new StreamIOException(e.getMessage(), e); } IRI iri = new IRI(name); dsvEntry.setSummary("AUDIT.0"); dsvEntry.setContent(iri, "text/xml"); } else { dsvEntry.setContent(DOTranslationUtility.getAuditTrail(m_obj), "text/xml"); } } | 14,785 |
0 | public static InputStream download_file(String sessionid, String key) { InputStream is = null; String urlString = "https://s2.cloud.cm/rpc/raw?c=Storage&m=download_file&key=" + key; try { String apple = ""; URL url = new URL(urlString); Log.d("current running function name:", "download_file"); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setRequestProperty("Cookie", "PHPSESSID=" + sessionid); conn.setRequestMethod("POST"); conn.setDoInput(true); is = conn.getInputStream(); return is; } catch (Exception e) { e.printStackTrace(); Log.d("download problem", "download problem"); } return is; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 14,786 |
1 | @Test public void test() throws JDOMException, IOException { InputStream is = this.getClass().getResourceAsStream("putRegularVehicle.xml"); ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream(); IOUtils.copy(is, byteArrayOutputStream); TrafficModelDefinition def = MDFReader.read(byteArrayOutputStream.toByteArray()); TrafficSimulationEngine se = new TrafficSimulationEngine(); se.init(def); int linkId = 2; int segmentId = 3; Map<Integer, Set<Integer>> linkSegments = new HashMap<Integer, Set<Integer>>(); Set<Integer> segments = new HashSet<Integer>(); segments.add(segmentId); linkSegments.put(linkId, segments); FrameProperties frameProperties = new FrameProperties(linkSegments, new HashSet<Integer>()); se.setFrameProperties(frameProperties); for (float time = 0; time < 60; time += 0.1f) { se.step(0.1f); System.out.println("*** Time: " + time); for (RoadObject roadObject : se.getDynamicObjects()) { Vehicle vehicle = (Vehicle) roadObject; System.out.println(vehicle.getVehicleId() + ":\tX=" + vehicle.getPosition() + "\tV=" + vehicle.getSpeed()); } } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 14,787 |
0 | public static void addProviders(URL url) { Reader reader = null; Properties prop = new Properties(); try { reader = new InputStreamReader(url.openStream()); prop.load(reader); } catch (Throwable t) { } finally { if (reader != null) { try { reader.close(); } catch (Throwable t) { } } } for (Map.Entry<Object, Object> entry : prop.entrySet()) { try { Class<?> cla = Class.forName((String) entry.getValue(), true, Thread.currentThread().getContextClassLoader()); providers.put(((String) entry.getKey()).toUpperCase(), (CharsetProvider) cla.newInstance()); } catch (Throwable t) { } } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 14,788 |
0 | protected URLConnection openURLConnection() throws IOException { final String locator = getMediaLocator(); if (locator == null) { return null; } final URL url; try { url = new URL(locator); } catch (MalformedURLException ex) { throw new IllegalArgumentException(ex); } final URLConnection connection = url.openConnection(); connection.connect(); return connection; } | private InputStream classpathStream(String path) { InputStream in = null; URL url = getClass().getClassLoader().getResource(path); if (url != null) { try { in = url.openStream(); } catch (IOException e) { e.printStackTrace(); } } return in; } | 14,789 |
0 | private static void testIfModified() throws IOException { HttpURLConnection c2 = (HttpURLConnection) url.openConnection(); c2.setIfModifiedSince(System.currentTimeMillis() + 1000); c2.connect(); int code = c2.getResponseCode(); System.out.print("If-Modified-Since : "); boolean supported = (code == 304); System.out.println(b2s(supported) + " - " + code + " (" + c2.getResponseMessage() + ")"); } | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | 14,790 |
1 | private static void generateFile(String inputFilename, String outputFilename) throws Exception { File inputFile = new File(inputFilename); if (inputFile.exists() == false) { throw new Exception(Messages.getString("ScriptDocToBinary.Input_File_Does_Not_Exist") + inputFilename); } Environment environment = new Environment(); environment.initBuiltInObjects(); NativeObjectsReader reader = new NativeObjectsReader(environment); InputStream input = new FileInputStream(inputFile); System.out.println(Messages.getString("ScriptDocToBinary.Reading_Documentation") + inputFilename); reader.loadXML(input); checkFile(outputFilename); File binaryFile = new File(outputFilename); FileOutputStream outputStream = new FileOutputStream(binaryFile); TabledOutputStream output = new TabledOutputStream(outputStream); reader.getScriptDoc().write(output); output.close(); System.out.println(Messages.getString("ScriptDocToBinary.Finished")); System.out.println(); } | private void handleUpload(CommonsMultipartFile file, String newFileName, String uploadDir) throws IOException, FileNotFoundException { File dirPath = new File(uploadDir); if (!dirPath.exists()) { dirPath.mkdirs(); } InputStream stream = file.getInputStream(); OutputStream bos = new FileOutputStream(uploadDir + newFileName); IOUtils.copy(stream, bos); } | 14,791 |
0 | private String generateFilename() { byte[] hash = null; try { MessageDigest digest = MessageDigest.getInstance("MD5"); try { digest.update(InetAddress.getLocalHost().toString().getBytes()); } catch (UnknownHostException e) { } digest.update(String.valueOf(System.currentTimeMillis()).getBytes()); digest.update(String.valueOf(Runtime.getRuntime().freeMemory()).getBytes()); byte[] foo = new byte[128]; new SecureRandom().nextBytes(foo); digest.update(foo); hash = digest.digest(); } catch (NoSuchAlgorithmException e) { Debug.assrt(false); } return hexEncode(hash); } | private void initialize() { if (!initialized) { if (context.getJavadocLinks() != null) { for (String url : context.getJavadocLinks()) { if (!url.endsWith("/")) { url += "/"; } StringWriter writer = new StringWriter(); try { IOUtils.copy(new URL(url + "package-list").openStream(), writer); } catch (Exception e) { e.printStackTrace(); continue; } StringTokenizer tokenizer2 = new StringTokenizer(writer.toString()); while (tokenizer2.hasMoreTokens()) { javadocByPackage.put(tokenizer2.nextToken(), url); } } } initialized = true; } } | 14,792 |
1 | public void scan() throws Throwable { client = new FTPClient(); log.info("connecting to " + host + "..."); client.connect(host); log.info(client.getReplyString()); log.info("logging in..."); client.login("anonymous", ""); log.info(client.getReplyString()); Date date = Calendar.getInstance().getTime(); xmlDocument = new XMLDocument(host, dir, date); scanDirectory(dir); } | public void run() { if (currentNode == null || currentNode.equals("")) { JOptionPane.showMessageDialog(null, "Please select a genome to download first", "Error", JOptionPane.ERROR_MESSAGE); return; } String localFile = parameter.getTemporaryFilesPath() + currentNode; String remotePath = NCBI_FTP_PATH + currentPath; String remoteFile = remotePath + "/" + currentNode; try { ftp.connect(NCBI_FTP_HOST); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); JOptionPane.showMessageDialog(null, "FTP server refused connection", "Error", JOptionPane.ERROR_MESSAGE); } ftp.login("anonymous", "anonymous@big.ac.cn"); inProgress = true; ftp.setFileType(FTPClient.BINARY_FILE_TYPE); long size = getFileSize(remotePath, currentNode); if (size == -1) throw new FileNotFoundException(); BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(localFile)); BufferedInputStream in = new BufferedInputStream(ftp.retrieveFileStream(remoteFile), ftp.getBufferSize()); byte[] b = new byte[1024]; long bytesTransferred = 0; int tick = 0; int oldTick = 0; int len; while ((len = in.read(b)) != -1) { out.write(b, 0, len); bytesTransferred += 1024; if ((tick = new Long(bytesTransferred * 100 / size).intValue()) > oldTick) { progressBar.setValue(tick < 100 ? tick : 99); oldTick = tick; } } in.close(); out.close(); ftp.completePendingCommand(); progressBar.setValue(100); fileDownloaded = localFile; JOptionPane.showMessageDialog(null, "File successfully downloaded", "Congratulation!", JOptionPane.INFORMATION_MESSAGE); ftp.logout(); } catch (SocketException ex) { JOptionPane.showMessageDialog(null, "Error occurs while trying to connect server", "Error", JOptionPane.ERROR_MESSAGE); } catch (FileNotFoundException ex) { JOptionPane.showMessageDialog(null, "This file is not found on the server", "Error", JOptionPane.ERROR_MESSAGE); } catch (IOException ex) { JOptionPane.showMessageDialog(null, "Error occurs while fetching data", "Error", JOptionPane.ERROR_MESSAGE); } finally { inProgress = false; if (ftp.isConnected()) { try { ftp.disconnect(); } catch (IOException ioe) { } } } } | 14,793 |
0 | public boolean addSiteScore(ArrayList<InitScoreTable> siteScores, InitScoreTable scoreTable, String filePath, String strTime) { boolean bResult = false; String strSql = ""; Connection conn = null; Statement stm = null; try { conn = db.getConnection(); conn.setAutoCommit(false); stm = conn.createStatement(); strSql = "delete from t_siteScore where strTaskId = '" + scoreTable.getStrSiteScoreTaskId() + "'"; stm.executeUpdate(strSql); for (int i = 0; i < siteScores.size(); i++) { InitScoreTable temp = siteScores.get(i); String tempSql = "select * from t_tagConf where strTagName='" + temp.getStrSiteScoreTagName() + "' and strTagYear='" + temp.getStrSiteScoreYear() + "' "; System.out.println(tempSql); ResultSet rst = stm.executeQuery(tempSql); if (rst.next()) { temp.setStrSiteScoreTagId(rst.getString("strId")); temp.setStrSiteinfoScoreParentId(rst.getString("strParentId")); } rst = null; } Iterator<InitScoreTable> it = siteScores.iterator(); String strCreatedTime = com.siteeval.common.Format.getDateTime(); String taskId = ""; while (it.hasNext()) { InitScoreTable thebean = it.next(); taskId = thebean.getStrSiteScoreTaskId(); String strId = UID.getID(); strSql = "INSERT INTO " + strTableName3 + "(strId,strTaskId,strTagId," + "strTagType,strTagName,strParentId,flaTagScore,strYear,datCreatedTime,strCreator) " + "VALUES('" + strId + "','" + taskId + "','" + thebean.getStrSiteScoreTagId() + "','" + thebean.getStrSiteScoreTagType() + "','" + thebean.getStrSiteScoreTagName() + "','" + thebean.getStrSiteinfoScoreParentId() + "','" + thebean.getFlaSiteScoreTagScore() + "','" + thebean.getStrSiteScoreYear() + "','" + strCreatedTime + "','" + thebean.getStrSiteScoreCreator() + "')"; stm.executeUpdate(strSql); } strSql = "update t_siteTotalScore set strSiteState=1,flaSiteScore='" + scoreTable.getFlaSiteScore() + "',flaInfoDisclosureScore='" + scoreTable.getFlaInfoDisclosureScore() + "',flaOnlineServicesScore='" + scoreTable.getFlaOnlineServicesScore() + "',flaPublicParticipationSore='" + scoreTable.getFlaPublicParticipationSore() + "',flaWebDesignScore='" + scoreTable.getFlaWebDesignScore() + "',strSiteFeature='" + scoreTable.getStrTotalScoreSiteFeature() + "',strSiteAdvantage='" + scoreTable.getStrTotalScoreSiteAdvantage() + "',strSiteFailure='" + scoreTable.getStrTotalScoreSiteFailure() + "' where strTaskId='" + scoreTable.getStrSiteScoreTaskId() + "'"; stm.executeUpdate(strSql); strSql = "update " + strTableName1 + " set templateUrl='" + filePath + "',dTaskBeginTime='" + strTime + "',dTaskEndTime='" + strTime + "' where strid = '" + scoreTable.getStrSiteScoreTaskId() + "'"; stm.executeUpdate(strSql); conn.commit(); bResult = true; } catch (Exception e) { try { conn.rollback(); } catch (Exception eee) { } System.out.println("������վ���ֱ���Ϣʱ���?"); } finally { try { conn.setAutoCommit(true); if (stm != null) { stm.close(); } if (conn != null) { conn.close(); } } catch (Exception ee) { } } return bResult; } | @Test public void test01_ok_failed_500() throws Exception { DefaultHttpClient client = new DefaultHttpClient(); try { HttpPost post = new HttpPost(chartURL); HttpResponse response = client.execute(post); assertEquals("failed code for ", 500, response.getStatusLine().getStatusCode()); } finally { client.getConnectionManager().shutdown(); } } | 14,794 |
0 | public static byte[] readFromURI(URI uri) throws IOException { if (uri.toString().contains("http:")) { URL url = uri.toURL(); URLConnection urlConnection = url.openConnection(); int length = urlConnection.getContentLength(); System.out.println("length of content in URL = " + length); if (length > -1) { byte[] pureContent = new byte[length]; DataInputStream dis = new DataInputStream(urlConnection.getInputStream()); dis.readFully(pureContent, 0, length); dis.close(); return pureContent; } else { throw new IOException("Unable to determine the content-length of the document pointed at " + url.toString()); } } else { return readWholeFile(uri).getBytes("UTF-8"); } } | public APIResponse create(User user) throws Exception { APIResponse response = new APIResponse(); connection = (HttpURLConnection) new URL(url + "/api/user/create").openConnection(); connection.setDoOutput(true); connection.setRequestMethod("POST"); connection.setRequestProperty("Content-Type", "application/json; charset=utf-8"); connection.setUseCaches(false); connection.setConnectTimeout(TIMEOUT); connection.connect(); marshaller.marshal(user, new MappedXMLStreamWriter(new MappedNamespaceConvention(new Configuration()), new OutputStreamWriter(connection.getOutputStream(), "utf-8"))); connection.getOutputStream().flush(); connection.getOutputStream().close(); if (connection.getResponseCode() == HttpURLConnection.HTTP_OK) { JSONObject obj = new JSONObject(new String(new BufferedReader(new InputStreamReader(connection.getInputStream(), "utf-8")).readLine())); response.setDone(true); response.setMessage(unmarshaller.unmarshal(new MappedXMLStreamReader(obj, new MappedNamespaceConvention(new Configuration())))); connection.getInputStream().close(); } else { response.setDone(false); response.setMessage("Create User Error Code: Http (" + connection.getResponseCode() + ")"); } connection.disconnect(); return response; } | 14,795 |
0 | private void retrieveData() { StringBuffer obsBuf = new StringBuffer(); try { URL url = new URL(getProperty("sourceURL")); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String lineIn = null; while ((lineIn = in.readLine()) != null) { if (GlobalProps.DEBUG) { logger.log(Level.FINE, "WebSource retrieveData: " + lineIn); } obsBuf.append(lineIn); } String fmt = getProperty("dataFormat"); if (GlobalProps.DEBUG) { logger.log(Level.FINE, "Raw: " + obsBuf.toString()); } if ("NWS XML".equals(fmt)) { obs = new NWSXmlObservation(obsBuf.toString()); } } catch (Exception e) { logger.log(Level.SEVERE, "Can't connect to: " + getProperty("sourceURL")); if (GlobalProps.DEBUG) { e.printStackTrace(); } } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 14,796 |
0 | public synchronized AbstractBaseObject update(AbstractBaseObject obj) throws ApplicationException { PreparedStatement preStat = null; StringBuffer sqlStat = new StringBuffer(); MailSetting tmpMailSetting = (MailSetting) ((MailSetting) obj).clone(); synchronized (dbConn) { try { int updateCnt = 0; Timestamp currTime = Utility.getCurrentTimestamp(); sqlStat.append("UPDATE MAIL_SETTING "); sqlStat.append("SET USER_RECORD_ID=?, PROFILE_NAME=?, MAIL_SERVER_TYPE=?, DISPLAY_NAME=?, EMAIL_ADDRESS=?, REMEMBER_PWD_FLAG=?, SPA_LOGIN_FLAG=?, INCOMING_SERVER_HOST=?, INCOMING_SERVER_PORT=?, INCOMING_SERVER_LOGIN_NAME=?, INCOMING_SERVER_LOGIN_PWD=?, OUTGOING_SERVER_HOST=?, OUTGOING_SERVER_PORT=?, OUTGOING_SERVER_LOGIN_NAME=?, OUTGOING_SERVER_LOGIN_PWD=?, PARAMETER_1=?, PARAMETER_2=?, PARAMETER_3=?, PARAMETER_4=?, PARAMETER_5=?, UPDATE_COUNT=?, UPDATER_ID=?, UPDATE_DATE=? "); sqlStat.append("WHERE ID=? AND UPDATE_COUNT=? "); preStat = dbConn.prepareStatement(sqlStat.toString(), ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); setPrepareStatement(preStat, 1, tmpMailSetting.getUserRecordID()); setPrepareStatement(preStat, 2, tmpMailSetting.getProfileName()); setPrepareStatement(preStat, 3, tmpMailSetting.getMailServerType()); setPrepareStatement(preStat, 4, tmpMailSetting.getDisplayName()); setPrepareStatement(preStat, 5, tmpMailSetting.getEmailAddress()); setPrepareStatement(preStat, 6, tmpMailSetting.getRememberPwdFlag()); setPrepareStatement(preStat, 7, tmpMailSetting.getSpaLoginFlag()); setPrepareStatement(preStat, 8, tmpMailSetting.getIncomingServerHost()); setPrepareStatement(preStat, 9, tmpMailSetting.getIncomingServerPort()); setPrepareStatement(preStat, 10, tmpMailSetting.getIncomingServerLoginName()); setPrepareStatement(preStat, 11, tmpMailSetting.getIncomingServerLoginPwd()); setPrepareStatement(preStat, 12, tmpMailSetting.getOutgoingServerHost()); setPrepareStatement(preStat, 13, tmpMailSetting.getOutgoingServerPort()); setPrepareStatement(preStat, 14, tmpMailSetting.getOutgoingServerLoginName()); setPrepareStatement(preStat, 15, tmpMailSetting.getOutgoingServerLoginPwd()); setPrepareStatement(preStat, 16, tmpMailSetting.getParameter1()); setPrepareStatement(preStat, 17, tmpMailSetting.getParameter2()); setPrepareStatement(preStat, 18, tmpMailSetting.getParameter3()); setPrepareStatement(preStat, 19, tmpMailSetting.getParameter4()); setPrepareStatement(preStat, 20, tmpMailSetting.getParameter5()); setPrepareStatement(preStat, 21, new Integer(tmpMailSetting.getUpdateCount().intValue() + 1)); setPrepareStatement(preStat, 22, sessionContainer.getUserRecordID()); setPrepareStatement(preStat, 23, currTime); setPrepareStatement(preStat, 24, tmpMailSetting.getID()); setPrepareStatement(preStat, 25, tmpMailSetting.getUpdateCount()); updateCnt = preStat.executeUpdate(); dbConn.commit(); if (updateCnt == 0) { throw new ApplicationException(ErrorConstant.DB_CONCURRENT_ERROR); } else { tmpMailSetting.setUpdaterID(sessionContainer.getUserRecordID()); tmpMailSetting.setUpdateDate(currTime); tmpMailSetting.setUpdateCount(new Integer(tmpMailSetting.getUpdateCount().intValue() + 1)); tmpMailSetting.setCreatorName(UserInfoFactory.getUserFullName(tmpMailSetting.getCreatorID())); tmpMailSetting.setUpdaterName(UserInfoFactory.getUserFullName(tmpMailSetting.getUpdaterID())); return (tmpMailSetting); } } catch (Exception e) { try { dbConn.rollback(); } catch (Exception ex) { } log.error(e, e); throw new ApplicationException(ErrorConstant.DB_UPDATE_ERROR, e); } finally { try { preStat.close(); } catch (Exception ignore) { } finally { preStat = null; } } } } | public Map<? extends ClassLoader, Set<String>> getClassNamesByClassLoader() throws IOException { final Map<? extends ClassLoader, Set<URL>> urlsByClassLoader = getClassNameListURLsByClassLoader(); final LinkedHashMap<ClassLoader, Set<String>> map = new LinkedHashMap<ClassLoader, Set<String>>(urlsByClassLoader.size()); final HashSet<String> allNames = new HashSet<String>(map.size()); for (final Map.Entry<? extends ClassLoader, Set<URL>> e : urlsByClassLoader.entrySet()) { LinkedHashSet<String> names = null; for (final URL url : e.getValue()) { InputStream bin = null; try { bin = url.openStream(); final LineNumberReader in = new LineNumberReader(new InputStreamReader(bin)); for (String line; (line = in.readLine()) != null; ) { line = line.trim(); if ((line.length() > 0) && (line.charAt(0) != '#') && allNames.add(line) && acceptClassName(e.getKey(), url, line)) { if (names == null) names = new LinkedHashSet<String>(e.getValue().size()); names.add(line); } } in.close(); bin = null; } catch (IOException ex) { handleIOException(e.getKey(), url, ex); } finally { if (bin != null) { try { bin.close(); } catch (IOException ex) { } } } } if (names != null) map.put(e.getKey(), names); } return map; } | 14,797 |
0 | private static String hash(String string) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (Exception e) { return null; } try { md.update(string.getBytes("UTF-8")); } catch (Exception e) { return null; } byte raw[] = md.digest(); return (new BASE64Encoder()).encode(raw); } | public static byte[] request(String remoteUrl, boolean keepalive) throws Exception { Log.d(TAG, String.format("started request(remote=%s)", remoteUrl)); Process.setThreadPriority(Process.THREAD_PRIORITY_LOWEST); byte[] buffer = new byte[1024]; URL url = new URL(remoteUrl); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.setAllowUserInteraction(false); connection.setRequestProperty("Viewer-Only-Client", "1"); connection.setRequestProperty("Client-Daap-Version", "3.10"); connection.setRequestProperty("Accept-Encoding", "gzip, deflate"); if (!keepalive) { connection.setConnectTimeout(1200000); connection.setReadTimeout(1200000); } else { connection.setReadTimeout(0); } connection.connect(); if (connection.getResponseCode() >= HttpURLConnection.HTTP_UNAUTHORIZED) throw new RequestException("HTTP Error Response Code: " + connection.getResponseCode(), connection.getResponseCode()); String encoding = connection.getContentEncoding(); InputStream inputStream = null; if (encoding != null && encoding.equalsIgnoreCase("gzip")) { inputStream = new GZIPInputStream(connection.getInputStream()); } else if (encoding != null && encoding.equalsIgnoreCase("deflate")) { inputStream = new InflaterInputStream(connection.getInputStream(), new Inflater(true)); } else { inputStream = connection.getInputStream(); } ByteArrayOutputStream os = new ByteArrayOutputStream(); try { int bytesRead; while ((bytesRead = inputStream.read(buffer)) != -1) { os.write(buffer, 0, bytesRead); } } finally { if (os != null) { os.flush(); os.close(); } if (inputStream != null) { inputStream.close(); } } return os.toByteArray(); } | 14,798 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public void saveToPackage() { boolean inPackage = false; String className = IconEditor.className; if (!checkPackage()) { JOptionPane.showMessageDialog(this, "No package selected. Aborting.", "Package not selected!", JOptionPane.WARNING_MESSAGE); return; } File iconFile = new File(getPackageFile().getParent() + File.separator + classIcon); File prevIconFile = new File(prevPackagePath + File.separator + classIcon); if ((IconEditor.getClassIcon() == null) || !prevIconFile.exists()) { IconEditor.setClassIcon("default.gif"); } else if (prevIconFile.exists() && (prevIconFile.compareTo(iconFile) != 0)) { FileFuncs.copyImageFile(prevIconFile, iconFile); } ci = new ClassImport(getPackageFile(), packageClassNamesList, packageClassList); for (int i = 0; i < packageClassList.size(); i++) { if (IconEditor.className.equalsIgnoreCase(packageClassList.get(i).getName())) { inPackage = true; classX = 0 - classX; classY = 0 - classY; shapeList.shift(classX, classY); packageClassList.get(i).setBoundingbox(boundingbox); packageClassList.get(i).setDescription(IconEditor.classDescription); if (IconEditor.getClassIcon() == null) { packageClassList.get(i).setIconName("default.gif"); } else { packageClassList.get(i).setIconName(IconEditor.getClassIcon()); } packageClassList.get(i).setIsRelation(IconEditor.classIsRelation); packageClassList.get(i).setName(IconEditor.className); packageClassList.get(i).setPorts(ports); packageClassList.get(i).shiftPorts(classX, classY); packageClassList.get(i).setShapeList(shapeList); if (dbrClassFields != null && dbrClassFields.getRowCount() > 0) { fields.clear(); for (int j = 0; j < dbrClassFields.getRowCount(); j++) { String fieldName = dbrClassFields.getValueAt(j, iNAME); String fieldType = dbrClassFields.getValueAt(j, iTYPE); String fieldValue = dbrClassFields.getValueAt(j, iVALUE); ClassField field = new ClassField(fieldName, fieldType, fieldValue); fields.add(field); } } packageClassList.get(i).setFields(fields); packageClassList.add(packageClassList.get(i)); packageClassList.remove(i); break; } } try { BufferedReader in = new BufferedReader(new FileReader(getPackageFile())); String str; StringBuffer content = new StringBuffer(); while ((str = in.readLine()) != null) { if (inPackage && str.trim().startsWith("<class")) { break; } else if (!inPackage) { if (str.equalsIgnoreCase("</package>")) break; content.append(str + "\n"); } else if (inPackage) content.append(str + "\n"); } if (!inPackage) { content.append(getShapesInXML(false)); } else { for (int i = 0; i < packageClassList.size(); i++) { classX = 0; classY = 0; makeClass(packageClassList.get(i)); content.append(getShapesInXML(false)); } } content.append("</package>"); in.close(); File javaFile = new File(getPackageFile().getParent() + File.separator + className + ".java"); File prevJavaFile = new File(prevPackagePath + File.separator + className + ".java"); int overwriteFile = JOptionPane.YES_OPTION; if (javaFile.exists()) { overwriteFile = JOptionPane.showConfirmDialog(null, "Java class already exists. Overwrite?"); } if (overwriteFile != JOptionPane.CANCEL_OPTION) { FileOutputStream out = new FileOutputStream(new File(getPackageFile().getAbsolutePath())); out.write(content.toString().getBytes()); out.flush(); out.close(); if (overwriteFile == JOptionPane.YES_OPTION) { String fileText = null; if (prevJavaFile.exists()) { fileText = FileFuncs.getFileContents(prevJavaFile); } else { fileText = "class " + className + " {"; fileText += "\n /*@ specification " + className + " {\n"; for (int i = 0; i < dbrClassFields.getRowCount(); i++) { String fieldName = dbrClassFields.getValueAt(i, iNAME); String fieldType = dbrClassFields.getValueAt(i, iTYPE); if (fieldType != null) { fileText += " " + fieldType + " " + fieldName + ";\n"; } } fileText += " }@*/\n \n}"; } FileFuncs.writeFile(javaFile, fileText); } JOptionPane.showMessageDialog(null, "Saved to package: " + getPackageFile().getName(), "Saved", JOptionPane.INFORMATION_MESSAGE); } } catch (IOException e) { e.printStackTrace(); } } | 14,799 |
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