label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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1 | public static String getDigest(String user, String realm, String password, String method, String uri, String nonce, String nc, String cnonce, String qop) { String digest1 = user + ":" + realm + ":" + password; String digest2 = method + ":" + uri; try { MessageDigest digestOne = MessageDigest.getInstance("md5"); digestOne.update(digest1.getBytes()); String hexDigestOne = getHexString(digestOne.digest()); MessageDigest digestTwo = MessageDigest.getInstance("md5"); digestTwo.update(digest2.getBytes()); String hexDigestTwo = getHexString(digestTwo.digest()); String digest3 = hexDigestOne + ":" + nonce + ":" + nc + ":" + cnonce + ":" + qop + ":" + hexDigestTwo; MessageDigest digestThree = MessageDigest.getInstance("md5"); digestThree.update(digest3.getBytes()); String hexDigestThree = getHexString(digestThree.digest()); return hexDigestThree; } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (Exception e) { e.printStackTrace(); } return null; } | public void mouseClicked(MouseEvent e) { String userNameString; String passwordString; String md5String = ""; MessageDigest md; userNameString = userNameJTextField.getText(); passwordString = passwordJTextField.getText(); try { md = MessageDigest.getInstance("MD5"); md.update(passwordString.getBytes()); md5String = new String(md.digest()); md5String = Base64.encode(md5String.getBytes()); System.out.println(md5String); } catch (NoSuchAlgorithmException e1) { e1.printStackTrace(); System.out.println("ʧ��"); } if (userNameString.equals("zouwulingde") && md5String.equals("aKdtP09kSTkWCD/cylk=")) { JOptionPane.showMessageDialog(null, "��ӭʹ��ѧ���ڹ���ϵͳ��"); } else { JOptionPane.showMessageDialog(null, "�û�������벻��ȷ!!!!"); } } | 16,000 |
0 | private void getDownloadLink() throws Exception { status = UploadStatus.GETTINGLINK; NULogger.getLogger().info("Now Getting Download link..."); HttpClient client = new DefaultHttpClient(); HttpGet h = new HttpGet(uploadresponse); h.setHeader("Referer", postURL); if (zShareAccount.loginsuccessful) { h.setHeader("Cookie", zShareAccount.getSidcookie() + ";" + zShareAccount.getMysessioncookie()); } else { h.setHeader("Cookie", sidcookie + ";" + mysessioncookie); } HttpResponse res = client.execute(h); HttpEntity entity = res.getEntity(); linkpage = EntityUtils.toString(entity); linkpage = linkpage.replaceAll("\n", ""); downloadlink = CommonUploaderTasks.parseResponse(linkpage, "value=\"", "\""); deletelink = CommonUploaderTasks.parseResponse(linkpage, "delete.html?", "\""); deletelink = "http://www.zshare.net/delete.html?" + deletelink; downURL = downloadlink; delURL = deletelink; NULogger.getLogger().log(Level.INFO, "Download link : {0}", downloadlink); NULogger.getLogger().log(Level.INFO, "Delete Link : {0}", deletelink); uploadFinished(); } | private OSD downloadList() throws IOException, IllegalStateException, ParseException, URISyntaxException { OSD osd = null; HttpClient client = new DefaultHttpClient(); HttpGet getMethod = new HttpGet(new URI(listUri)); try { HttpResponse response = client.execute(getMethod); if (response.getStatusLine().getStatusCode() != HttpStatus.SC_OK) { throw new HttpResponseException(response.getStatusLine().getStatusCode(), response.getStatusLine().getReasonPhrase()); } HttpEntity entity = response.getEntity(); if (entity != null) { InputStream stream = entity.getContent(); String charset = null; if (entity.getContentType() != null) { HeaderElement values[] = entity.getContentType().getElements(); if (values.length > 0) { NameValuePair param = values[0].getParameterByName("charset"); if (param != null) { charset = param.getValue(); } } } if (charset == null) { charset = HTTP.DEFAULT_CONTENT_CHARSET; } osd = OSD.parse(stream, charset); } } finally { getMethod.abort(); } return osd; } | 16,001 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | private void regattaBackup() { SwingWorker sw = new SwingWorker() { Regatta lRegatta = fRegatta; public Object construct() { String fullName = lRegatta.getSaveDirectory() + lRegatta.getSaveName(); System.out.println(MessageFormat.format(res.getString("MainMessageBackingUp"), new Object[] { fullName + BAK })); try { FileInputStream fis = new FileInputStream(new File(fullName)); FileOutputStream fos = new FileOutputStream(new File(fullName + BAK)); int bufsize = 1024; byte[] buffer = new byte[bufsize]; int n = 0; while ((n = fis.read(buffer, 0, bufsize)) >= 0) fos.write(buffer, 0, n); fos.flush(); fos.close(); } catch (java.io.IOException ex) { Util.showError(ex, true); } return null; } }; sw.start(); } | 16,002 |
0 | @Override public void run() { try { if (!Util.isSufficienDataForUpload(recordedGeoPoints)) return; final InputStream gpxInputStream = new ByteArrayInputStream(RecordedRouteGPXFormatter.create(recordedGeoPoints).getBytes()); final HttpClient httpClient = new DefaultHttpClient(); final HttpPost request = new HttpPost(UPLOADSCRIPT_URL); final MultipartEntity requestEntity = new MultipartEntity(); requestEntity.addPart("gpxfile", new InputStreamBody(gpxInputStream, "" + System.currentTimeMillis() + ".gpx")); httpClient.getParams().setBooleanParameter("http.protocol.expect-continue", false); request.setEntity(requestEntity); final HttpResponse response = httpClient.execute(request); final int status = response.getStatusLine().getStatusCode(); if (status != HttpStatus.SC_OK) { logger.error("GPXUploader", "status != HttpStatus.SC_OK"); } else { final Reader r = new InputStreamReader(new BufferedInputStream(response.getEntity().getContent())); final char[] buf = new char[8 * 1024]; int read; final StringBuilder sb = new StringBuilder(); while ((read = r.read(buf)) != -1) sb.append(buf, 0, read); logger.debug("GPXUploader", "Response: " + sb.toString()); } } catch (final Exception e) { } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 16,003 |
0 | private static byte[] Md5f(String plainText) { byte[] ab = new byte[16]; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(plainText.getBytes()); byte b[] = md.digest(); ab = b; } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return ab; } | public static void BubbleSortLong2(long[] num) { int last_exchange; int right_border = num.length - 1; do { last_exchange = 0; for (int j = 0; j < num.length - 1; j++) { if (num[j] > num[j + 1]) { long temp = num[j]; num[j] = num[j + 1]; num[j + 1] = temp; last_exchange = j; } } right_border = last_exchange; } while (right_border > 0); } | 16,004 |
0 | private static InputStream download(String url) { try { HttpClient httpclient = new DefaultHttpClient(); HttpGet httpget = new HttpGet(url); HttpResponse httpresponse = httpclient.execute(httpget); HttpEntity httpentity = httpresponse.getEntity(); if (httpentity != null) { return httpentity.getContent(); } } catch (Exception e) { Log.e("Android", e.getMessage()); } return null; } | public static void save(String from, String recipient, InputStream in, MimeMessage message) throws IOException, MessagingException, DocumentVideException { ConversationManager conversationManager = FGDSpringUtils.getConversationManager(); conversationManager.beginConversation(); FGDDelegate delegate = new FGDDelegate(); UtilisateurIFGD utilisateur = delegate.getUtilisateurParCourriel(from); if (utilisateur == null) { String responseEmailSubject = "Votre adresse ne correspond pas à celle d'un utilisateur d'IntelliGID"; String responseEmailMessage = "<h3>Pour sauvegarder un courriel, vous devez être un utilisateur d'IntelliGID et l'adresse de courrier électronique utilisée doit être celle apparaissant dans votre profil.</h3>"; String sender = recipient.endsWith("localhost") ? FGDSpringUtils.getExpediteurSupport() : recipient; Map<String, String> recipients = new HashMap<String, String>(); recipients.put(from, null); MailUtils.sendSimpleHTMLMessage(recipients, responseEmailSubject, responseEmailMessage, sender); return; } File tempFile = File.createTempFile("email", ".eml"); tempFile.deleteOnExit(); BufferedInputStream bis = new BufferedInputStream(in); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(tempFile)); IOUtils.copy(bis, bos); IOUtils.closeQuietly(bis); IOUtils.closeQuietly(bos); if (message == null) { GestionnaireProprietesMimeMessageParser gestionnaire = new GestionnaireProprietesMimeMessageParser(); message = gestionnaire.asMimeMessage(new BufferedInputStream(new FileInputStream(tempFile))); } String subject; try { subject = message.getSubject().replace("Fwd:", "").trim(); } catch (MessagingException e) { subject = "Message sans sujet"; } File tempDir = new File(System.getProperty("java.io.tmpdir")); if (!tempDir.exists()) { tempDir.mkdirs(); } File emailFile = new File(tempDir, FilenameUtils.normalize(subject) + ".eml"); FileUtils.copyFile(tempFile, emailFile); FicheDocument ficheDocument = new FicheDocument(); ficheDocument.setFicheCompletee(false); ficheDocument.setDateCreationHorodatee(new Date()); ficheDocument.setUtilisateurSoumetteur(utilisateur); ficheDocument.getLangues().addAll(getLanguesDefaut()); ficheDocument.setCourriel(true); FileIOContenuFichierElectronique contenuFichier = new FileIOContenuFichierElectronique(emailFile, "multipart/alternative"); SupportDocument support = new SupportDocument(); support.setFicheDocument(ficheDocument); FichierElectroniqueUtils.setContenu(ficheDocument, support, contenuFichier, utilisateur); ficheDocument.setTitre(subject); delegate.sauvegarder(ficheDocument, utilisateur); String modifyEmail = "http://" + FGDSpringUtils.getServerHost() + ":" + FGDSpringUtils.getServerPort() + "/" + FGDSpringUtils.getApplicationName() + "/app/modifierDocument/id/" + ficheDocument.getId(); System.out.println(modifyEmail); String responseEmailSubject = "Veuillez compléter la fiche du courriel «" + subject + "»"; String responseEmailMessage = "<h3>Le courrier électronique a été sauvegardé, mais il est nécessaire de <a href=\"" + modifyEmail + "\">compléter sa fiche</a>.</h3>"; String sender = recipient.endsWith("localhost") ? FGDSpringUtils.getExpediteurSupport() : recipient; try { MailUtils.sendSimpleHTMLMessage(utilisateur, responseEmailSubject, responseEmailMessage, sender); } catch (Throwable e) { e.printStackTrace(); } conversationManager.commitTransaction(); tempFile.delete(); } | 16,005 |
1 | private void setInlineXML(Entry entry, DatastreamXMLMetadata ds) throws UnsupportedEncodingException, StreamIOException { String content; if (m_obj.hasContentModel(Models.SERVICE_DEPLOYMENT_3_0) && (ds.DatastreamID.equals("SERVICE-PROFILE") || ds.DatastreamID.equals("WSDL"))) { content = DOTranslationUtility.normalizeInlineXML(new String(ds.xmlContent, m_encoding), m_transContext); } else { content = new String(ds.xmlContent, m_encoding); } if (m_format.equals(ATOM_ZIP1_1)) { String name = ds.DSVersionID + ".xml"; try { m_zout.putNextEntry(new ZipEntry(name)); InputStream is = new ByteArrayInputStream(content.getBytes(m_encoding)); IOUtils.copy(is, m_zout); m_zout.closeEntry(); is.close(); } catch (IOException e) { throw new StreamIOException(e.getMessage(), e); } IRI iri = new IRI(name); entry.setSummary(ds.DSVersionID); entry.setContent(iri, ds.DSMIME); } else { entry.setContent(content, ds.DSMIME); } } | public static void main(String[] args) throws IOException { MSPack pack = new MSPack(new FileInputStream(args[0])); String[] files = pack.getFileNames(); for (int i = 0; i < files.length; i++) System.out.println(i + ": " + files[i] + ": " + pack.getLengths()[i]); System.out.println("Writing " + files[files.length - 1]); InputStream is = pack.getInputStream(files.length - 1); OutputStream os = new FileOutputStream(files[files.length - 1]); int n; byte[] buf = new byte[4096]; while ((n = is.read(buf)) != -1) os.write(buf, 0, n); os.close(); is.close(); } | 16,006 |
0 | public synchronized String encrypt(final String pPassword) throws NoSuchAlgorithmException, UnsupportedEncodingException { final MessageDigest md = MessageDigest.getInstance("SHA"); md.update(pPassword.getBytes("UTF-8")); final byte raw[] = md.digest(); return BASE64Encoder.encodeBuffer(raw); } | private RSSFeed getFeed(String urlToRssFeed) { try { URL url = new URL(urlToRssFeed); SAXParserFactory factory = SAXParserFactory.newInstance(); SAXParser parser = factory.newSAXParser(); XMLReader xmlreader = parser.getXMLReader(); RSSHandler theRssHandler = new RSSHandler(); xmlreader.setContentHandler(theRssHandler); InputSource is = new InputSource(url.openStream()); xmlreader.parse(is); return theRssHandler.getFeed(); } catch (Exception ee) { return null; } } | 16,007 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public boolean copyFile(File source, File dest) { try { FileReader in = new FileReader(source); FileWriter out = new FileWriter(dest); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return true; } catch (Exception e) { return false; } } | 16,008 |
1 | private void appendAndDelete(FileOutputStream outstream, String file) throws FileNotFoundException, IOException { FileInputStream input = new FileInputStream(file); byte[] buffer = new byte[65536]; int l; while ((l = input.read(buffer)) != -1) outstream.write(buffer, 0, l); input.close(); new File(file).delete(); } | private static void reconfigureDebug() { useFile = false; logValue = 0; String methodString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.method']/@value"); String levelString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.level']/@value"); String quietString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.quiet']/@value"); String fileString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.file']/@value"); String filemodeString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.filemode']/@value"); String calltraceString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.calltrace']/@value"); String rotateTimeoutString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.rotatetimeout']/@value"); String rotateDestString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.rotatedest']/@value"); String rotateCompressString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.rotatecompress']/@value"); String rotateDaysString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.rotatedays']/@value"); String rotateArchiveString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.rotatearchive']/@value"); String rotateDeleteString = NodeUtil.walkNodeTree(Server.getConfig(), "//configuration/object[@type='engine.debug']/property[@type='engine.rotatedelete']/@value"); String dirName = "."; if (rotateTimeoutString != null) { rotateTimeout = Integer.parseInt(rotateTimeoutString); } if (rotateDestString != null) { rotateDest = rotateDestString; } if (rotateCompressString != null && rotateCompressString.equalsIgnoreCase("true")) { rotateCompress = true; } if (rotateDaysString != null) { rotateDays = Integer.parseInt(rotateDaysString); } if (rotateArchiveString != null) { rotateArchive = rotateArchiveString; } if (rotateDeleteString != null && rotateDeleteString.equalsIgnoreCase("true")) { rotateDelete = true; } if (fileString != null && fileString.indexOf("/") != -1) { dirName = fileString.substring(0, fileString.lastIndexOf("/")); (new File(dirName)).mkdirs(); } if (methodString != null) { logMethod = methodString; } else { logMethod = "file"; } if (levelString != null) { logValue = Integer.parseInt(levelString); } else { logValue = 0; } if (calltraceString != null && calltraceString.equalsIgnoreCase("true")) { calltrace = true; } else { calltrace = false; } if (logMethod == null) { logMethod = "file"; } if (quietString != null) { if (quietString.equalsIgnoreCase("true")) { beQuiet = true; } } if (logMethod != null) { if (logMethod.equalsIgnoreCase("file")) { if (fileString != null) { logFile = fileString; } else { logFile = "log.txt"; } useFile = true; } } else { System.err.println("*** A debugging method (debug.method) is required in properties file!"); System.err.println("*** Please refer to configuration documentation."); System.exit(-1); } timesRepeated = 0; lastMessage = null; if (useFile) { logfile = new File(logFile); try { if (filemodeString != null && filemodeString.equalsIgnoreCase("append")) { ps = new PrintStream(new FileOutputStream(logfile, true)); } else { ps = new PrintStream(new FileOutputStream(logfile)); } isFile = true; Calendar calendar = new GregorianCalendar(); Date date = calendar.getTime(); DateFormat format1 = new SimpleDateFormat("yyyy-MM-dd 'at' HH:mm:ss z"); ps.println(); ps.println("--- Log file opened " + format1.format(date) + " ---"); } catch (FileNotFoundException e) { System.out.println("Debug: Unable to instantiate debugger: " + e.getMessage()); System.exit(-1); } catch (Exception e) { System.out.println("Debug: Unable to instantiate debugger - internal error: " + e.getMessage()); System.exit(-1); } } if (!registeredSchedule) { registeredSchedule = true; if (Server.getScheduler() != null) { Server.getScheduler().register("Log File Rotator for '" + logFile + "'", new SchedulerInterface() { public int getScheduleRate() { if (rotateTimeout != 0) { return rotateTimeout / 10; } return 0; } public void handle() { FileChannel srcChannel, destChannel; String destOutFile = logFile + "." + System.currentTimeMillis(); String destOutFileCompressed = logFile + "." + System.currentTimeMillis() + ".gz"; if (rotateDest != null) { (new File(rotateDest)).mkdirs(); if (destOutFile.indexOf("/") != -1) { destOutFile = rotateDest + "/" + destOutFile.substring(destOutFile.lastIndexOf("/") + 1); } if (destOutFileCompressed.indexOf("/") != -1) { destOutFileCompressed = rotateDest + "/" + destOutFileCompressed.substring(destOutFileCompressed.lastIndexOf("/") + 1); } } if (rotateCompress) { try { GZIPOutputStream out = new GZIPOutputStream(new FileOutputStream(destOutFileCompressed)); FileInputStream in = new FileInputStream(logFile); byte buf[] = new byte[1024]; int len; while ((len = in.read(buf)) > 0) { out.write(buf, 0, len); } in.close(); out.finish(); out.close(); buf = null; in = null; out = null; Debug.debug("Rotated log file '" + logFile + "' to '" + destOutFileCompressed + "'"); } catch (Exception e) { Debug.debug("Unable to rotate log file '" + logFile + "': " + e); } } else { try { srcChannel = new FileInputStream(logFile).getChannel(); } catch (IOException e) { Debug.debug("Unable to read log file '" + logFile + "': " + e.getMessage()); return; } try { destChannel = new FileOutputStream(destOutFile).getChannel(); } catch (IOException e) { Debug.debug("Unable to rotate log file to '" + destOutFile + "': " + e.getMessage()); return; } try { destChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); destChannel.close(); srcChannel = null; destChannel = null; } catch (IOException e) { Debug.debug("Unable to copy data for file rotation: " + e.getMessage()); return; } Debug.debug("Rotated log file '" + logFile + "' to '" + destOutFile + "'"); } if (rotateDelete && isFile) { try { ps.close(); } catch (Exception e) { } isFile = false; ps = null; (new File(logFile)).delete(); reconfigureDebug(); } if (rotateDest != null) { long comparisonTime = rotateDays * (60 * 60 * 24 * 1000); long currentTime = System.currentTimeMillis(); File fileList[] = (new File(rotateDest)).listFiles(); DateFormat format1 = new SimpleDateFormat("yyyy-MM-dd"); java.util.Date date = new java.util.Date(currentTime); String archiveFile = format1.format(date).toString() + ".zip"; if (rotateArchive != null) { archiveFile = rotateArchive + "/" + archiveFile; (new File(rotateArchive)).mkdirs(); } Archive archive = new Archive(archiveFile); for (int i = 0; i < fileList.length; i++) { String currentFilename = fileList[i].getName(); long timeDifference = (currentTime - fileList[i].lastModified()); if ((rotateCompress && currentFilename.endsWith(".gz")) || (!rotateCompress && currentFilename.indexOf(logFile + ".") != -1)) { if (rotateDest != null) { currentFilename = rotateDest + "/" + currentFilename; } if (timeDifference > comparisonTime) { archive.addFile(fileList[i].getName(), currentFilename); fileList[i].delete(); } } } archive = null; fileList = null; format1 = null; date = null; } } public String identString() { return "Debug Rotator for logs"; } }); } } } | 16,009 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public void save(File selectedFile) throws IOException { if (storeEntriesInFiles) { boolean moved = false; for (int i = 0; i < tempFiles.size(); i++) { File newFile = new File(selectedFile.getAbsolutePath() + "_" + Integer.toString(i) + ".zettmp"); moved = tempFiles.get(i).renameTo(newFile); if (!moved) { BufferedReader read = new BufferedReader(new FileReader(tempFiles.get(i))); PrintWriter write = new PrintWriter(newFile); String s; while ((s = read.readLine()) != null) write.print(s); read.close(); write.flush(); write.close(); tempFiles.get(i).delete(); } tempFiles.set(i, newFile); } } GZIPOutputStream output = new GZIPOutputStream(new BufferedOutputStream(new FileOutputStream(selectedFile))); XStream xml_convert = new XStream(); xml_convert.setMode(XStream.ID_REFERENCES); xml_convert.toXML(this, output); output.flush(); output.close(); } | 16,010 |
1 | public static void reconstruct(final List files, final Map properties, final OutputStream fout, final String base_url, final String producer, final PageSize[] size, final List hf) throws CConvertException { OutputStream out = fout; OutputStream out2 = fout; boolean signed = false; OutputStream oldOut = null; File tmp = null; File tmp2 = null; try { tmp = File.createTempFile("yahp", "pdf"); tmp2 = File.createTempFile("yahp", "pdf"); oldOut = out; if ("true".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_SIGNING))) { signed = true; out2 = new FileOutputStream(tmp2); } else { out2 = oldOut; } out = new FileOutputStream(tmp); com.lowagie.text.Document document = null; PdfCopy writer = null; boolean first = true; Map mapSizeDoc = new HashMap(); int totalPage = 0; for (int i = 0; i < files.size(); i++) { final File fPDF = (File) files.get(i); final PdfReader reader = new PdfReader(fPDF.getAbsolutePath()); reader.consolidateNamedDestinations(); final int n = reader.getNumberOfPages(); if (first) { first = false; document = new com.lowagie.text.Document(reader.getPageSizeWithRotation(1)); writer = new PdfCopy(document, out); writer.setPdfVersion(PdfWriter.VERSION_1_3); writer.setFullCompression(); if ("true".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_ENCRYPTION))) { final String password = (String) properties.get(IHtmlToPdfTransformer.PDF_ENCRYPTION_PASSWORD); final int securityType = CDocumentReconstructor.getSecurityFlags(properties); writer.setEncryption(PdfWriter.STRENGTH128BITS, password, null, securityType); } final String title = (String) properties.get(IHtmlToPdfTransformer.PDF_TITLE); if (title != null) { document.addTitle(title); } else if (base_url != null) { document.addTitle(base_url); } final String creator = (String) properties.get(IHtmlToPdfTransformer.PDF_CREATOR); if (creator != null) { document.addCreator(creator); } else { document.addCreator(IHtmlToPdfTransformer.VERSION); } final String author = (String) properties.get(IHtmlToPdfTransformer.PDF_AUTHOR); if (author != null) { document.addAuthor(author); } final String sproducer = (String) properties.get(IHtmlToPdfTransformer.PDF_PRODUCER); if (sproducer != null) { document.addProducer(sproducer); } else { document.addProducer(IHtmlToPdfTransformer.VERSION + " - http://www.allcolor.org/YaHPConverter/ - " + producer); } document.open(); } PdfImportedPage page; for (int j = 0; j < n; ) { ++j; totalPage++; mapSizeDoc.put("" + totalPage, "" + i); page = writer.getImportedPage(reader, j); writer.addPage(page); } } document.close(); out.flush(); out.close(); { final PdfReader reader = new PdfReader(tmp.getAbsolutePath()); ; final int n = reader.getNumberOfPages(); final PdfStamper stp = new PdfStamper(reader, out2); int i = 0; BaseFont.createFont(BaseFont.HELVETICA, BaseFont.WINANSI, BaseFont.EMBEDDED); final CHtmlToPdfFlyingSaucerTransformer trans = new CHtmlToPdfFlyingSaucerTransformer(); while (i < n) { i++; int indexSize = Integer.parseInt((String) mapSizeDoc.get("" + i)); final int[] dsize = size[indexSize].getSize(); final int[] dmargin = size[indexSize].getMargin(); for (final Iterator it = hf.iterator(); it.hasNext(); ) { final CHeaderFooter chf = (CHeaderFooter) it.next(); if (chf.getSfor().equals(CHeaderFooter.ODD_PAGES) && (i % 2 == 0)) { continue; } else if (chf.getSfor().equals(CHeaderFooter.EVEN_PAGES) && (i % 2 != 0)) { continue; } final String text = chf.getContent().replaceAll("<pagenumber>", "" + i).replaceAll("<pagecount>", "" + n); final PdfContentByte over = stp.getOverContent(i); final ByteArrayOutputStream bbout = new ByteArrayOutputStream(); if (chf.getType().equals(CHeaderFooter.HEADER)) { trans.transform(new ByteArrayInputStream(text.getBytes("utf-8")), base_url, new PageSize(dsize[0] - (dmargin[0] + dmargin[1]), dmargin[3]), new ArrayList(), properties, bbout); } else if (chf.getType().equals(CHeaderFooter.FOOTER)) { trans.transform(new ByteArrayInputStream(text.getBytes("utf-8")), base_url, new PageSize(dsize[0] - (dmargin[0] + dmargin[1]), dmargin[2]), new ArrayList(), properties, bbout); } final PdfReader readerHF = new PdfReader(bbout.toByteArray()); if (chf.getType().equals(CHeaderFooter.HEADER)) { over.addTemplate(stp.getImportedPage(readerHF, 1), dmargin[0], dsize[1] - dmargin[3]); } else if (chf.getType().equals(CHeaderFooter.FOOTER)) { over.addTemplate(stp.getImportedPage(readerHF, 1), dmargin[0], 0); } readerHF.close(); } } stp.close(); } try { out2.flush(); } catch (Exception ignore) { } finally { try { out2.close(); } catch (Exception ignore) { } } if (signed) { final String keypassword = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_PRIVATE_KEY_PASSWORD); final String password = (String) properties.get(IHtmlToPdfTransformer.PDF_ENCRYPTION_PASSWORD); final String keyStorepassword = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_KEYSTORE_PASSWORD); final String privateKeyFile = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_PRIVATE_KEY_FILE); final String reason = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_REASON); final String location = (String) properties.get(IHtmlToPdfTransformer.PDF_SIGNING_LOCATION); final boolean selfSigned = !"false".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_SELF_SIGNING)); PdfReader reader = null; if (password != null) { reader = new PdfReader(tmp2.getAbsolutePath(), password.getBytes()); } else { reader = new PdfReader(tmp2.getAbsolutePath()); } final KeyStore ks = selfSigned ? KeyStore.getInstance(KeyStore.getDefaultType()) : KeyStore.getInstance("pkcs12"); ks.load(new FileInputStream(privateKeyFile), keyStorepassword.toCharArray()); final String alias = (String) ks.aliases().nextElement(); final PrivateKey key = (PrivateKey) ks.getKey(alias, keypassword.toCharArray()); final Certificate chain[] = ks.getCertificateChain(alias); final PdfStamper stp = PdfStamper.createSignature(reader, oldOut, '\0'); if ("true".equals(properties.get(IHtmlToPdfTransformer.USE_PDF_ENCRYPTION))) { stp.setEncryption(PdfWriter.STRENGTH128BITS, password, null, CDocumentReconstructor.getSecurityFlags(properties)); } final PdfSignatureAppearance sap = stp.getSignatureAppearance(); if (selfSigned) { sap.setCrypto(key, chain, null, PdfSignatureAppearance.SELF_SIGNED); } else { sap.setCrypto(key, chain, null, PdfSignatureAppearance.WINCER_SIGNED); } if (reason != null) { sap.setReason(reason); } if (location != null) { sap.setLocation(location); } stp.close(); oldOut.flush(); } } catch (final Exception e) { throw new CConvertException("ERROR: An Exception occured while reconstructing the pdf document: " + e.getMessage(), e); } finally { try { tmp.delete(); } catch (final Exception ignore) { } try { tmp2.delete(); } catch (final Exception ignore) { } } } | public static void main(String[] a) throws Exception { HashMap<String, Integer> numberOfOccurencesOfThisComboe = new HashMap<String, Integer>(); HashMap<String, String> fileToCATHMapping = new HashMap<String, String>(); ArrayList<String> allFilesToBeCopied = new ArrayList<String>(); new File(outputDir).mkdirs(); FileReader fis = new FileReader(completeFileWithDirToCathFileList); BufferedReader bis = new BufferedReader(fis); String line = ""; String currentCombo = ""; while ((line = bis.readLine()) != null) { String[] allEntries = line.split("\\s+"); String fileName = allEntries[0]; String thisCombo = allEntries[1] + allEntries[2] + allEntries[3] + allEntries[4]; String reducedComboForFilteringOut = allEntries[1] + allEntries[2] + allEntries[3]; fileToCATHMapping.put(fileName, reducedComboForFilteringOut); if (currentCombo.equals(thisCombo)) { } else { System.out.println("merke: " + fileName); allFilesToBeCopied.add(fileName); currentCombo = thisCombo; } } for (String fileName : allFilesToBeCopied) { String reducedComboForFilteringOut = fileToCATHMapping.get(fileName); if (!numberOfOccurencesOfThisComboe.containsKey(reducedComboForFilteringOut)) { numberOfOccurencesOfThisComboe.put(reducedComboForFilteringOut, 1); } else { Integer thisCounter = numberOfOccurencesOfThisComboe.get(reducedComboForFilteringOut); thisCounter = thisCounter + 1; numberOfOccurencesOfThisComboe.put(reducedComboForFilteringOut, thisCounter); } } HashSet<String> isSingleElement = new HashSet<String>(); for (Entry<String, Integer> thisEntry : numberOfOccurencesOfThisComboe.entrySet()) { if (thisEntry.getValue() == 1) { System.out.println("single: " + thisEntry.getKey()); isSingleElement.add(thisEntry.getKey()); } else { System.out.println("not single: " + thisEntry.getKey()); } } System.out.println(allFilesToBeCopied.size()); for (String file : allFilesToBeCopied) { if (!isSingleElement.contains(fileToCATHMapping.get(file))) { try { FileChannel srcChannel = new FileInputStream(CathDir + file).getChannel(); FileChannel dstChannel = new FileOutputStream(outputDir + file).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException e) { e.printStackTrace(); } } } } | 16,011 |
1 | public static void copyURLToFile(URL source, File destination) throws IOException { InputStream input = source.openStream(); try { FileOutputStream output = openOutputStream(destination); try { IOUtils.copy(input, output); } finally { IOUtils.close(output); } } finally { IOUtils.close(input); } } | private File uploadToTmp() { if (fileFileName == null) { return null; } File tmpFile = dataDir.tmpFile(shortname, fileFileName); log.debug("Uploading dwc archive file for new resource " + shortname + " to " + tmpFile.getAbsolutePath()); InputStream input = null; OutputStream output = null; try { input = new FileInputStream(file); output = new FileOutputStream(tmpFile); IOUtils.copy(input, output); output.flush(); log.debug("Uploaded file " + fileFileName + " with content-type " + fileContentType); } catch (IOException e) { log.error(e); return null; } finally { if (output != null) { IOUtils.closeQuietly(output); } if (input != null) { IOUtils.closeQuietly(input); } } return tmpFile; } | 16,012 |
0 | @Override public String post(final FetchInfos fetchInfos, final String data) throws HttpException { URL url = null; try { url = new URL(fetchInfos.getUri()); } catch (MalformedURLException exception) { throw new HttpException("uri is malformed '" + fetchInfos.getUri() + "'", exception); } HttpURLConnection connection = null; try { connection = (HttpURLConnection) url.openConnection(); } catch (IOException exception) { fetchInfos.setResult(FETCHING_RESULT.IO_ERROR); throw new HttpException("get '" + fetchInfos.getUri() + "' failed", exception); } InputStream input = null; try { connection.setRequestMethod("POST"); connection.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); connection.setRequestProperty("Content-Length", "" + Integer.toString(data.getBytes().length)); final DataOutputStream wr = new DataOutputStream(connection.getOutputStream()); wr.writeBytes(data); wr.flush(); wr.close(); input = connection.getInputStream(); if ("gzip".equals(connection.getHeaderField("content-encoding"))) { input = new GZIPInputStream(input); } if (HttpServiceImpl.LOGGER.isDebugEnabled()) { this.logConnection(connection); input = new LoggingInputStream(input); } } catch (SocketTimeoutException exception) { fetchInfos.setResult(FETCHING_RESULT.TIME_OUT); throw new HttpException("get '" + fetchInfos.getUri() + "' timeout", exception); } catch (IOException exception) { fetchInfos.setResult(FETCHING_RESULT.IO_ERROR); throw new HttpException("get '" + fetchInfos.getUri() + "' failed", exception); } fetchInfos.setResult(FETCHING_RESULT.OK); String response = null; try { response = this.toString(input); } catch (IOException exception) { throw new HttpException("converting inputstream to string failed", exception); } return response; } | public static void copyFile(File src, File dest) throws IOException, IllegalArgumentException { if (src.isDirectory()) throw new IllegalArgumentException("Source file is a directory"); if (dest.isDirectory()) throw new IllegalArgumentException("Destination file is a directory"); int bufferSize = 4 * 1024; InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dest); byte[] buffer = new byte[bufferSize]; int bytesRead; while ((bytesRead = in.read(buffer)) >= 0) out.write(buffer, 0, bytesRead); out.close(); in.close(); } | 16,013 |
0 | public synchronized String getEncryptedPassword(String plaintext, String algorithm) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; try { md = MessageDigest.getInstance(algorithm); md.update(plaintext.getBytes("UTF-8")); } catch (NoSuchAlgorithmException nsae) { throw nsae; } catch (UnsupportedEncodingException uee) { throw uee; } return (new BigInteger(1, md.digest())).toString(16); } | public static void copyFile(String f_in, String f_out, boolean remove) throws FileNotFoundException, IOException { if (remove) { PogoString readcode = new PogoString(PogoUtil.readFile(f_in)); readcode = PogoUtil.removeLogMessages(readcode); PogoUtil.writeFile(f_out, readcode.str); } else { FileInputStream fid = new FileInputStream(f_in); FileOutputStream fidout = new FileOutputStream(f_out); int nb = fid.available(); byte[] inStr = new byte[nb]; if (fid.read(inStr) > 0) fidout.write(inStr); fid.close(); fidout.close(); } } | 16,014 |
1 | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String version = null; String build = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim(); } bin.close(); if (version != null && build != null) { if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else { GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]); } } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | public static boolean reportException(Throwable ex, HashMap<String, String> suppl) { if (Activator.getDefault().getPreferenceStore().getBoolean(PreferenceConstants.P_CRASH_REPORTING)) { logger.debug("Report exception to devs..."); String data = "reportType=exception&" + "message=" + ex.getMessage(); data += "&build=" + Platform.getBundle("de.uni_mannheim.swt.codeconjurer").getHeaders().get("Bundle-Version"); int ln = 0; for (StackTraceElement el : ex.getStackTrace()) { data += "&st_line_" + ++ln + "=" + el.getClassName() + "#" + el.getMethodName() + "<" + el.getLineNumber() + ">"; } data += "&lines=" + ln; data += "&Suppl-Description=" + ex.toString(); data += "&Suppl-Server=" + Activator.getDefault().getPreferenceStore().getString(PreferenceConstants.P_SERVER); data += "&Suppl-User=" + Activator.getDefault().getPreferenceStore().getString(PreferenceConstants.P_USERNAME); if (suppl != null) { for (String key : suppl.keySet()) { data += "&Suppl-" + key + "=" + suppl.get(key); } } try { URL url = new URL("http://www.merobase.com:7777/org.code_conjurer.udc/CrashReport"); URLConnection conn = url.openConnection(); conn.setDoOutput(true); OutputStreamWriter writer = new OutputStreamWriter(conn.getOutputStream()); writer.write(data); writer.flush(); StringBuffer answer = new StringBuffer(); BufferedReader reader = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = reader.readLine()) != null) { answer.append(line + "\r\n"); } writer.close(); reader.close(); logger.debug(answer.toString()); } catch (Exception e) { logger.debug("Could not report exception"); return false; } return true; } else { logger.debug("Reporting not wished!"); return false; } } | 16,015 |
1 | public void setTableBraille(String tableBraille, boolean sys) { fiConf.setProperty(OptNames.fi_braille_table, tableBraille); fiConf.setProperty(OptNames.fi_is_sys_braille_table, Boolean.toString(sys)); FileChannel in = null; FileChannel out = null; try { String fichTable; if (!(tableBraille.endsWith(".ent"))) { tableBraille = tableBraille + ".ent"; } if (sys) { fichTable = ConfigNat.getInstallFolder() + "xsl/tablesBraille/" + tableBraille; } else { fichTable = ConfigNat.getUserBrailleTableFolder() + tableBraille; } in = new FileInputStream(fichTable).getChannel(); out = new FileOutputStream(getUserBrailleTableFolder() + "Brltab.ent").getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } try { String fichTable; if (sys) { fichTable = ConfigNat.getInstallFolder() + "/xsl/tablesEmbosseuse/" + tableBraille; } else { fichTable = ConfigNat.getUserEmbossTableFolder() + "/" + tableBraille; } in = new FileInputStream(fichTable).getChannel(); out = new FileOutputStream(ConfigNat.getUserTempFolder() + "Table_pour_chaines.ent").getChannel(); in.transferTo(0, in.size(), out); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } } | private static void copy(String srcFilename, String dstFilename, boolean override) throws IOException, XPathFactoryConfigurationException, SAXException, ParserConfigurationException, XPathExpressionException { File fileToCopy = new File(rootDir + "test-output/" + srcFilename); if (fileToCopy.exists()) { File newFile = new File(rootDir + "test-output/" + dstFilename); if (!newFile.exists() || override) { try { FileChannel srcChannel = new FileInputStream(rootDir + "test-output/" + srcFilename).getChannel(); FileChannel dstChannel = new FileOutputStream(rootDir + "test-output/" + dstFilename).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException e) { } } } } | 16,016 |
0 | private void updateUser(AddEditUserForm addform, HttpServletRequest request) throws Exception { Session hbsession = HibernateUtil.currentSession(); try { Transaction tx = hbsession.beginTransaction(); NvUsers user = (NvUsers) hbsession.load(NvUsers.class, addform.getLogin()); if (!addform.getPassword().equalsIgnoreCase("")) { MessageDigest md = (MessageDigest) MessageDigest.getInstance("MD5").clone(); md.update(addform.getPassword().getBytes("UTF-8")); byte[] pd = md.digest(); StringBuffer app = new StringBuffer(); for (int i = 0; i < pd.length; i++) { String s2 = Integer.toHexString(pd[i] & 0xFF); app.append((s2.length() == 1) ? "0" + s2 : s2); } user.setPassword(app.toString()); } ActionErrors errors = new ActionErrors(); HashMap cAttrs = addform.getCustomAttrs(); Query q1 = hbsession.createQuery("from org.nodevision.portal.hibernate.om.NvCustomAttrs as a"); Iterator attrs = q1.iterate(); HashMap attrInfos = new HashMap(); while (attrs.hasNext()) { NvCustomAttrs element = (NvCustomAttrs) attrs.next(); attrInfos.put(element.getAttrName(), element.getAttrType()); NvCustomValuesId id = new NvCustomValuesId(); id.setNvUsers(user); NvCustomValues value = new NvCustomValues(); id.setNvCustomAttrs(element); value.setId(id); if (element.getAttrType().equalsIgnoreCase("String")) { ByteArrayOutputStream bout = new ByteArrayOutputStream(); ObjectOutputStream serializer = new ObjectOutputStream(bout); serializer.writeObject(cAttrs.get(element.getAttrName()).toString()); value.setAttrValue(Hibernate.createBlob(bout.toByteArray())); } else if (element.getAttrType().equalsIgnoreCase("Boolean")) { Boolean valueBoolean = Boolean.FALSE; if (cAttrs.get(element.getAttrName()) != null) { valueBoolean = Boolean.TRUE; } ByteArrayOutputStream bout = new ByteArrayOutputStream(); ObjectOutputStream serializer = new ObjectOutputStream(bout); serializer.writeObject(valueBoolean); value.setAttrValue(Hibernate.createBlob(bout.toByteArray())); } else if (element.getAttrType().equalsIgnoreCase("Date")) { Date date = new Date(0); if (!cAttrs.get(element.getAttrName()).toString().equalsIgnoreCase("")) { String bdate = cAttrs.get(element.getAttrName()).toString(); SimpleDateFormat df = new SimpleDateFormat("dd-MM-yyyy"); date = df.parse(bdate); } ByteArrayOutputStream bout = new ByteArrayOutputStream(); ObjectOutputStream serializer = new ObjectOutputStream(bout); serializer.writeObject(date); value.setAttrValue(Hibernate.createBlob(bout.toByteArray())); } hbsession.saveOrUpdate(value); hbsession.flush(); } String bdate = addform.getUser_bdate(); SimpleDateFormat df = new SimpleDateFormat("dd-MM-yyyy"); Date parsedDate = df.parse(bdate); user.setTimezone(addform.getTimezone()); user.setLocale(addform.getLocale()); user.setBdate(new BigDecimal(parsedDate.getTime())); user.setGender(addform.getUser_gender()); user.setEmployer(addform.getEmployer()); user.setDepartment(addform.getDepartment()); user.setJobtitle(addform.getJobtitle()); user.setNamePrefix(addform.getName_prefix()); user.setNameGiven(addform.getName_given()); user.setNameFamily(addform.getName_famliy()); user.setNameMiddle(addform.getName_middle()); user.setNameSuffix(addform.getName_suffix()); user.setHomeName(addform.getHome_name()); user.setHomeStreet(addform.getHome_street()); user.setHomeStateprov(addform.getHome_stateprov()); user.setHomePostalcode(addform.getHome_postalcode().equalsIgnoreCase("") ? new Integer(0) : new Integer(addform.getHome_postalcode())); user.setHomeOrganization(addform.getHome_organization_name()); user.setHomeCountry(addform.getHome_country()); user.setHomeCity(addform.getHome_city()); user.setHomePhoneIntcode((addform.getHome_phone_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_phone_intcode())); user.setHomePhoneLoccode((addform.getHome_phone_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_phone_loccode())); user.setHomePhoneNumber((addform.getHome_phone_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_phone_number())); user.setHomePhoneExt((addform.getHome_phone_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_phone_ext())); user.setHomePhoneComment(addform.getHome_phone_commment()); user.setHomeFaxIntcode((addform.getHome_fax_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_fax_intcode())); user.setHomeFaxLoccode((addform.getHome_fax_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_fax_loccode())); user.setHomeFaxNumber((addform.getHome_fax_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_fax_number())); user.setHomeFaxExt((addform.getHome_fax_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_fax_ext())); user.setHomeFaxComment(addform.getHome_fax_commment()); user.setHomeMobileIntcode((addform.getHome_mobile_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_mobile_intcode())); user.setHomeMobileLoccode((addform.getHome_mobile_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_mobile_loccode())); user.setHomeMobileNumber((addform.getHome_mobile_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_mobile_number())); user.setHomeMobileExt((addform.getHome_mobile_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_mobile_ext())); user.setHomeMobileComment(addform.getHome_mobile_commment()); user.setHomePagerIntcode((addform.getHome_pager_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_pager_intcode())); user.setHomePagerLoccode((addform.getHome_pager_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_pager_loccode())); user.setHomePagerNumber((addform.getHome_pager_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_pager_number())); user.setHomePagerExt((addform.getHome_pager_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getHome_pager_ext())); user.setHomePagerComment(addform.getHome_pager_commment()); user.setHomeUri(addform.getHome_uri()); user.setHomeEmail(addform.getHome_email()); user.setBusinessName(addform.getBusiness_name()); user.setBusinessStreet(addform.getBusiness_street()); user.setBusinessStateprov(addform.getBusiness_stateprov()); user.setBusinessPostalcode((addform.getBusiness_postalcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_postalcode())); user.setBusinessOrganization(addform.getBusiness_organization_name()); user.setBusinessCountry(addform.getBusiness_country()); user.setBusinessCity(addform.getBusiness_city()); user.setBusinessPhoneIntcode((addform.getBusiness_phone_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_phone_intcode())); user.setBusinessPhoneLoccode((addform.getBusiness_phone_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_phone_loccode())); user.setBusinessPhoneNumber((addform.getBusiness_phone_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_phone_number())); user.setBusinessPhoneExt((addform.getBusiness_phone_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_phone_ext())); user.setBusinessPhoneComment(addform.getBusiness_phone_commment()); user.setBusinessFaxIntcode((addform.getBusiness_fax_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_fax_intcode())); user.setBusinessFaxLoccode((addform.getBusiness_fax_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_fax_loccode())); user.setBusinessFaxNumber((addform.getBusiness_fax_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_fax_number())); user.setBusinessFaxExt((addform.getBusiness_fax_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_fax_ext())); user.setBusinessFaxComment(addform.getBusiness_fax_commment()); user.setBusinessMobileIntcode((addform.getBusiness_mobile_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_mobile_intcode())); user.setBusinessMobileLoccode((addform.getBusiness_mobile_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_mobile_loccode())); user.setBusinessMobileNumber((addform.getBusiness_mobile_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_mobile_number())); user.setBusinessMobileExt((addform.getBusiness_mobile_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_mobile_ext())); user.setBusinessMobileComment(addform.getBusiness_mobile_commment()); user.setBusinessPagerIntcode((addform.getBusiness_pager_intcode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_pager_intcode())); user.setBusinessPagerLoccode((addform.getBusiness_pager_loccode().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_pager_loccode())); user.setBusinessPagerNumber((addform.getBusiness_pager_number().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_pager_number())); user.setBusinessPagerExt((addform.getBusiness_pager_ext().equalsIgnoreCase("")) ? new Integer(0) : Integer.valueOf(addform.getBusiness_pager_ext())); user.setBusinessPagerComment(addform.getBusiness_pager_commment()); user.setBusinessUri(addform.getBusiness_uri()); user.setBusinessEmail(addform.getBusiness_email()); String hqlDelete = "delete org.nodevision.portal.hibernate.om.NvUserRoles where login = :login"; int deletedEntities = hbsession.createQuery(hqlDelete).setString("login", user.getLogin()).executeUpdate(); String[] selectedGroups = addform.getSelectedGroups(); Set newGroups = new HashSet(); for (int i = 0; i < selectedGroups.length; i++) { NvUserRolesId userroles = new NvUserRolesId(); userroles.setNvUsers(user); userroles.setNvRoles((NvRoles) hbsession.load(NvRoles.class, selectedGroups[i])); NvUserRoles newRole = new NvUserRoles(); newRole.setId(userroles); newGroups.add(newRole); } user.setSetOfNvUserRoles(newGroups); hbsession.update(user); hbsession.flush(); if (!hbsession.connection().getAutoCommit()) { tx.commit(); } } finally { HibernateUtil.closeSession(); } } | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | 16,017 |
1 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | private String encryptPassword(String password) throws NoSuchAlgorithmException { MessageDigest encript = MessageDigest.getInstance("MD5"); encript.update(password.getBytes()); byte[] b = encript.digest(); int size = b.length; StringBuffer h = new StringBuffer(size); for (int i = 0; i < size; i++) { h.append(b[i]); } return h.toString(); } | 16,018 |
0 | public void modifyDecisionInstruction(int id, int condition, String frameSlot, String linkName, int objectId, String attribute, int positive, int negative) throws FidoDatabaseException, ObjectNotFoundException, InstructionNotFoundException { try { Connection conn = null; Statement stmt = null; try { if ((condition == ConditionalOperatorTable.CONTAINS_LINK) || (condition == ConditionalOperatorTable.NOT_CONTAINS_LINK)) { ObjectTable ot = new ObjectTable(); if (ot.contains(objectId) == false) throw new ObjectNotFoundException(objectId); } conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); if (contains(stmt, positive) == false) throw new InstructionNotFoundException(positive); if (contains(stmt, negative) == false) throw new InstructionNotFoundException(negative); String sql = "update Instructions set Operator = " + condition + ", " + " FrameSlot = '" + frameSlot + "', " + " LinkName = '" + linkName + "', " + " ObjectId = " + objectId + ", " + " AttributeName = '" + attribute + "' " + "where InstructionId = " + id; stmt.executeUpdate(sql); InstructionGroupTable groupTable = new InstructionGroupTable(); groupTable.deleteInstruction(stmt, id); if (positive != -1) groupTable.addInstructionAt(stmt, id, 1, positive); if (negative != -1) groupTable.addInstructionAt(stmt, id, 2, negative); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | public String postFileRequest(String fileName, String internalFileName) throws Exception { status = STATUS_INIT; String responseString = null; String requestStringPostFix = new String(""); if (isThreadStopped) { return ""; } status = STATUS_UPLOADING; if (isThreadStopped) { return ""; } String requestString = new String(""); int contentLength = 0, c = 0, counter = 0; try { for (java.util.Iterator i = parameters.entrySet().iterator(); i.hasNext(); ) { java.util.Map.Entry e = (java.util.Map.Entry) i.next(); requestString = requestString + "-----------------------------7d338a374003ea\n" + "Content-Disposition: form-data; name=\"" + (String) e.getKey() + "\"\n\n" + (String) e.getValue() + "\n\n"; } URL url = new URL(urlString); URLConnection connection = url.openConnection(); HttpURLConnection httpConn = (HttpURLConnection) connection; requestString = requestString + "-----------------------------7d338a374003ea\n" + "Content-Disposition: form-data; name=\"" + internalFileName + "\"; filename=\"" + fileName + "\"\n" + "Content-Type: text/plain\n\n"; requestStringPostFix = requestStringPostFix + "\n\n" + "-----------------------------7d338a374003ea\n" + "\n"; FileInputStream fis = null; String str = null; try { fis = new FileInputStream(fileName); int fileSize = fis.available(); contentLength = requestString.length() + requestStringPostFix.length() + fileSize; httpConn.setRequestProperty("Content-Length", String.valueOf(contentLength)); httpConn.setRequestProperty("Content-Type", "multipart/form-data; boundary=---------------------------7d338a374003ea"); httpConn.setRequestMethod("POST"); httpConn.setDoOutput(true); httpConn.setDoInput(true); try { connection.connect(); } catch (ConnectException ec2) { error = true; finished = true; errorStr = "Cannot connect to: " + urlString; System.out.println("Cannot connect to:" + urlString); } catch (java.io.InterruptedIOException e) { error = true; finished = true; errorStr = "Connection to Portal lost: communication is timeouted."; parentWorkflow.getMenuButtonEventHandler().stopAutomaticRefresh(); } catch (IllegalStateException ei) { error = true; finished = true; errorStr = "IllegalStateException: " + ei.getMessage(); } OutputStream out = httpConn.getOutputStream(); byte[] toTransfer = requestString.getBytes("UTF-8"); for (int i = 0; i < toTransfer.length; i++) { out.write(toTransfer[i]); } int count; int zBUFFER = 8 * 1024; setUploadProgress(fileSize, counter); byte data[] = new byte[zBUFFER]; GZIPOutputStream zos = new GZIPOutputStream(out); while ((count = fis.read(data, 0, zBUFFER)) != -1) { if (isThreadStopped) { return ""; } zos.write(data, 0, count); setUploadProgress(fileSize, counter); counter += count; } zos.flush(); zos.finish(); setUploadProgress(fileSize, counter); toTransfer = requestStringPostFix.getBytes("UTF-8"); for (int i = 0; i < toTransfer.length; i++) { out.write(toTransfer[i]); } out.close(); } catch (IOException e) { finished = true; error = true; errorStr = "Error in Uploading file: " + fileName; } finally { try { fis.close(); } catch (IOException e2) { } } InputStreamReader isr = new InputStreamReader(httpConn.getInputStream()); BufferedReader br = new BufferedReader(isr); String temp; String tempResponse = ""; while ((temp = br.readLine()) != null) { if (isThreadStopped) { return ""; } tempResponse = tempResponse + temp + "\n"; setDecompressStatusAtUpload(temp); } responseString = tempResponse; isr.close(); } catch (ConnectException ec) { error = true; finished = true; errorStr = "Cannot connect to: " + urlString + "\nServer is not responding."; } catch (java.io.InterruptedIOException e) { error = true; finished = true; errorStr = "Connection to Portal lost: communication is timeouted."; parentWorkflow.getMenuButtonEventHandler().stopAutomaticRefresh(); } catch (IOException e2) { finished = true; error = true; errorStr = "IOError in postFileRequest: " + e2.getMessage(); } catch (Exception e4) { finished = true; error = true; errorStr = "Error while trying to communicate the server: " + e4.getMessage(); } return responseString; } | 16,019 |
0 | public Component loadComponent(URI uri, URI origuri) throws ComponentException { if (usePrivMan) PrivilegeManager.enablePrivilege("UniversalConnect"); ConzillaRDFModel model = factory.createModel(origuri, uri); RDFParser parser = new com.hp.hpl.jena.rdf.arp.StanfordImpl(); java.net.URL url = null; try { url = uri.getJavaURL(); } catch (java.net.MalformedURLException e) { throw new ComponentException("Invalid URL " + uri + " for component " + origuri + ":\n " + e.getMessage()); } try { InputSource source = new InputSource(url.openStream()); source.setSystemId(origuri.toString()); parser.parse(source, new ModelConsumer(model)); factory.getTotalModel().addModel(model); } catch (org.xml.sax.SAXException se) { se.getException().printStackTrace(); throw new ComponentException("Format error loading URL " + url + " for component " + origuri + ":\n " + se.getMessage()); } catch (java.io.IOException se) { throw new ComponentException("IO error loading URL " + url + " for component " + origuri + ":\n " + se.getMessage()); } catch (org.w3c.rdf.model.ModelException se) { throw new ComponentException("Model error loading URL " + url + " for component " + origuri + ":\n " + se.getMessage()); } return model; } | public void init() throws IOException { if (this.inputStream == null) this.inputStream = new BufferedInputStream(url.openStream()); else { this.inputStream.close(); this.inputStream = new BufferedInputStream(url.openStream()); } } | 16,020 |
0 | public Gif(URL url) throws BadElementException, IOException { super(url); type = GIF; InputStream is = null; try { is = url.openStream(); if (is.read() != 'G' || is.read() != 'I' || is.read() != 'F') { throw new BadElementException(url.toString() + " is not a valid GIF-file."); } skip(is, 3); scaledWidth = is.read() + (is.read() << 8); setRight((int) scaledWidth); scaledHeight = is.read() + (is.read() << 8); setTop((int) scaledHeight); } finally { if (is != null) { is.close(); } plainWidth = width(); plainHeight = height(); } } | protected KMLRoot parseCachedKMLFile(URL url, String linkBase, String contentType, boolean namespaceAware) throws IOException, XMLStreamException { KMLDoc kmlDoc; InputStream refStream = url.openStream(); if (KMLConstants.KMZ_MIME_TYPE.equals(contentType)) kmlDoc = new KMZInputStream(refStream); else kmlDoc = new KMLInputStream(refStream, WWIO.makeURI(linkBase)); try { KMLRoot refRoot = new KMLRoot(kmlDoc, namespaceAware); refRoot.parse(); return refRoot; } catch (XMLStreamException e) { refStream.close(); throw e; } } | 16,021 |
0 | List HttpPost(URL url, List requestList) throws IOException { List responseList = new ArrayList(); URLConnection con; BufferedReader in; OutputStreamWriter out; StringBuffer req; String line; logInfo("HTTP POST: " + url); con = url.openConnection(); con.setDoInput(true); con.setDoOutput(true); con.setUseCaches(false); con.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); out = new OutputStreamWriter(con.getOutputStream()); req = new StringBuffer(); for (int i = 0, n = requestList.size(); i < n; i++) { if (i != 0) req.append("&"); req.append(((HttpHeader) requestList.get(i)).key); req.append("="); if (((HttpHeader) requestList.get(i)).unicode) { StringBuffer tmp = new StringBuffer(200); byte[] uniBytes = ((HttpHeader) requestList.get(i)).value.getBytes("UnicodeBigUnmarked"); for (int j = 0; j < uniBytes.length; j++) tmp.append(Integer.toHexString(uniBytes[j]).length() == 1 ? "0" + Integer.toHexString(uniBytes[j]) : Integer.toHexString(uniBytes[j])); req.append(tmp.toString().replaceAll("ff", "")); } else req.append(((HttpHeader) requestList.get(i)).value); } out.write(req.toString()); out.flush(); out.close(); in = new BufferedReader(new InputStreamReader((con.getInputStream()))); while ((line = in.readLine()) != null) responseList.add(line); in.close(); return responseList; } | private static String getBase64(String text, String algorithm) throws NoSuchAlgorithmException { AssertUtility.notNull(text); AssertUtility.notNullAndNotSpace(algorithm); String base64; MessageDigest md = MessageDigest.getInstance(algorithm); md.update(text.getBytes()); base64 = new BASE64Encoder().encode(md.digest()); return base64; } | 16,022 |
0 | protected void handleHttp(String path, IProgressMonitor monitor, SchemaGeneratorContext ctx) throws CoreException, DuplicateFileException { InputStream is = null; try { URL url = new URL(path); is = url.openStream(); IFolder folder = getXsdFolder(); String _path = url.getPath(); String[] contents = StringUtils.tokenizeToStringArray(_path, "/"); String file = contents[contents.length - 1]; if (file.indexOf(".") > -1) { IFile f = folder.getFile(file); if (!f.exists()) { f.create(is, false, monitor); String schemaFile = f.getLocation().toFile().getAbsolutePath(); ctx.setSchemaFiles(schemaFile); return; } throw new DuplicateFileException("File " + file + " already exists"); } IStatus status = new Status(IStatus.ERROR, JeeServiceComponentUIPlugin.PLUGIN_ID, IStatus.OK, "I/O Exception", new FileNotFoundException("No file associated to " + url)); throw new CoreException(status); } catch (MalformedURLException e) { IStatus status = new Status(IStatus.ERROR, JeeServiceComponentUIPlugin.PLUGIN_ID, IStatus.OK, "Malformed URL Exception", e); throw new CoreException(status); } catch (IOException e) { IStatus status = new Status(IStatus.ERROR, JeeServiceComponentUIPlugin.PLUGIN_ID, IStatus.OK, "I/O Exception", e); throw new CoreException(status); } finally { if (is != null) { try { is.close(); } catch (IOException e) { } } } } | public static GoogleResponse getElevation(String lat, String lon) throws IOException { String url = "http://maps.google.com/maps/api/elevation/xml?locations="; url = url + String.valueOf(lat); url = url + ","; url = url + String.valueOf(lon); url = url + "&sensor=false"; BufferedReader in = new BufferedReader(new InputStreamReader(new URL(url).openStream())); String line; GoogleResponse googleResponse = new GoogleResponse(); googleResponse.lat = Double.valueOf(lat); googleResponse.lon = Double.valueOf(lon); while ((line = in.readLine()) != null) { line = line.trim(); if (line.startsWith("<status>")) { line = line.replace("<status>", ""); line = line.replace("</status>", ""); googleResponse.status = line; if (!line.toLowerCase().equals("ok")) return googleResponse; } else if (line.startsWith("<elevation>")) { line = line.replace("<elevation>", ""); line = line.replace("</elevation>", ""); googleResponse.elevation = Double.valueOf(line); return googleResponse; } } return googleResponse; } | 16,023 |
1 | public static String getMD5(String password) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(password.getBytes()); byte[] digest = md.digest(); String out = ""; for (int i = 0; i < digest.length; i++) { out += digest[i]; } return out; } catch (NoSuchAlgorithmException e) { System.err.println("Manca l'MD5 (piuttosto strano)"); } return ""; } | public static String hash(String password) { try { MessageDigest digest = MessageDigest.getInstance(digestAlgorithm); digest.update(password.getBytes(charset)); byte[] rawHash = digest.digest(); return new String(Hex.encodeHex(rawHash)); } catch (Exception e) { throw new RuntimeException(e); } } | 16,024 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { closeQuietly(in); closeQuietly(out); } return success; } | protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { String pathInfo = request.getPathInfo(); getLog().info("Process request " + pathInfo); if (null != pathInfo) { String pathId = getPathId(pathInfo); JobResources res = ContextUtil.getJobResource(pathId); if (null != res) { RequestType requType = getRequestType(request); ResultAccess access = new ResultAccess(res); Collection<Long> uIdColl = res.getUniqIds(); boolean isFiltered = false; { List<String> postSeqIds = getSeqList(request); if (!postSeqIds.isEmpty()) { isFiltered = true; uIdColl = access.loadIds(postSeqIds); } } try { if ((requType.equals(RequestType.FASTA)) || (requType.equals(RequestType.SWISSPROT))) { OutputStreamWriter out = null; out = new OutputStreamWriter(response.getOutputStream()); for (Long uid : uIdColl) { if (requType.equals(RequestType.FASTA)) { SwissProt sw = access.getSwissprotEntry(uid); if (null != sw) { PrintFactory.instance().print(ConvertFactory.instance().SwissProt2fasta(sw), out); } else { System.err.println("Not able to read Swissprot entry " + uid + " in project " + res.getBaseDir()); } } else if (requType.equals(RequestType.SWISSPROT)) { File swissFile = res.getSwissprotFile(uid); if (swissFile.exists()) { InputStream in = null; try { in = new FileInputStream(swissFile); IOUtils.copy(in, out); } catch (IOException e) { e.printStackTrace(); System.err.println("Problems with reading file to output stream " + swissFile); } finally { IOUtils.closeQuietly(in); } } else { System.err.println("Swissprot file does not exist: " + swissFile); } } } out.flush(); } else { if (uIdColl.size() <= 2) { isFiltered = false; uIdColl = res.getUniqIds(); } Tree tree = access.getTreeByUniquId(uIdColl); if (requType.equals(RequestType.TREE)) { response.getWriter().write(tree.toNewHampshireX()); } else if (requType.equals(RequestType.PNG)) { List<SwissProt> sp = access.getSwissprotEntriesByUniquId(uIdColl); ImageMap map = ImageFactory.instance().createProteinCard(sp, tree, true, res); response.setContentType("image/png"); response.addHeader("Content-Disposition", "filename=ProteinCards.png"); ImageFactory.instance().printPNG(map.getImage(), response.getOutputStream()); response.getOutputStream().flush(); } else if (requType.equals(RequestType.HTML)) { List<SwissProt> sp = access.getSwissprotEntriesByUniquId(uIdColl); createHtml(res, access, tree, request, response, sp, isFiltered); } } } catch (Exception e) { e.printStackTrace(); getLog().error("Problem with Request: " + pathInfo + "; type " + requType, e); } } else { getLog().error("Resource is null: " + pathId + "; path " + pathInfo); } } else { getLog().error("PathInfo is null!!!"); } } | 16,025 |
1 | private String hashSong(Song s) { if (s == null) return null; try { MessageDigest digest = MessageDigest.getInstance("SHA-256"); digest.update(s.getTitle().getBytes()); digest.update(s.getAllLyrics().getBytes()); String hash = Base64.encodeBytes(digest.digest()); return hash; } catch (NoSuchAlgorithmException e) { e.printStackTrace(); return null; } } | public synchronized String getEncryptedPassword(String plaintext, String algorithm) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; md = MessageDigest.getInstance(algorithm); md.update(plaintext.getBytes("UTF-8")); return bytesToHexString(md.digest()); } | 16,026 |
0 | public void loadJarFile(String jarFileNameParam) throws KExceptionClass { jarFileName = jarFileNameParam; { String message = "Loading resource file ["; message += jarFileName; message += "]..."; log.log(this, message); } try { URL url = new URL(jarFileName); JarURLConnection jarConnection = (JarURLConnection) url.openConnection(); jarConnection.setUseCaches(false); JarFile jarFile = jarConnection.getJarFile(); Enumeration jarEntries = jarFile.entries(); while (jarEntries.hasMoreElements()) { ZipEntry zipEntrie = (ZipEntry) jarEntries.nextElement(); { String message = "Scanning ["; message += jarFileName; message += "] found ["; message += describeEntry(zipEntrie); message += "]"; log.log(this, message); } htSizes.put(zipEntrie.getName(), new Integer((int) zipEntrie.getSize())); } ; jarFile.close(); BufferedInputStream inputBuffer = new BufferedInputStream(jarConnection.getJarFileURL().openStream()); ZipInputStream input = new ZipInputStream(inputBuffer); ZipEntry zipEntrie = null; while ((zipEntrie = input.getNextEntry()) != null) { if (zipEntrie.isDirectory()) continue; { String message = "Scanning ["; message += jarFileName; message += "] loading ["; message += zipEntrie.getName(); message += "] for ["; message += zipEntrie.getSize(); message += "] bytes."; log.log(this, message); } int size = (int) zipEntrie.getSize(); if (size == -1) { size = ((Integer) htSizes.get(zipEntrie.getName())).intValue(); } ; byte[] entrieData = new byte[(int) size]; int offset = 0; int dataRead = 0; while (((int) size - offset) > 0) { dataRead = input.read(entrieData, offset, (int) size - offset); if (dataRead == -1) break; offset += dataRead; } htJarContents.put(zipEntrie.getName(), entrieData); if (debugOn) { System.out.println(zipEntrie.getName() + " offset=" + offset + ",size=" + size + ",csize=" + zipEntrie.getCompressedSize()); } ; } ; } catch (Exception error) { String message = "Error loading data from JAR file ["; message += error.toString(); message += "]"; throw new KExceptionClass(message, new KExceptionClass(error.toString(), null)); } ; } | public static String getUrl(String urlString) { int retries = 0; String result = ""; while (true) { try { URL url = new URL(urlString); BufferedReader rdr = new BufferedReader(new InputStreamReader(url.openStream())); String line = rdr.readLine(); while (line != null) { result += line; line = rdr.readLine(); } return result; } catch (IOException ex) { if (retries == 5) { logger.debug("Problem getting url content exhausted"); return result; } else { logger.debug("Problem getting url content retrying..." + urlString); try { Thread.sleep((int) Math.pow(2.0, retries) * 1000); } catch (InterruptedException e) { } retries++; } } } } | 16,027 |
0 | private void downloadFile(File file, String url) { String state = Environment.getExternalStorageState(); if (Environment.MEDIA_MOUNTED.equals(state)) { InputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new URL(url).openStream(), IO_BUFFER_SIZE); final FileOutputStream outStream = new FileOutputStream(file); out = new BufferedOutputStream(outStream, IO_BUFFER_SIZE); byte[] bytes = new byte[IO_BUFFER_SIZE]; while (in.read(bytes) > 0) { out.write(bytes); } } catch (IOException e) { e.printStackTrace(); } finally { if (in != null) { try { in.close(); } catch (IOException e) { e.printStackTrace(); } } if (out != null) { try { out.close(); } catch (IOException e) { e.printStackTrace(); } } } } } | public Object construct() { Object result; try { if (getParameter("data") != null && getParameter("data").length() > 0) { NanoXMLDOMInput domi = new NanoXMLDOMInput(new UMLFigureFactory(), new StringReader(getParameter("data"))); result = domi.readObject(0); } else if (getParameter("datafile") != null) { InputStream in = null; try { URL url = new URL(getDocumentBase(), getParameter("datafile")); in = url.openConnection().getInputStream(); NanoXMLDOMInput domi = new NanoXMLDOMInput(new UMLFigureFactory(), in); result = domi.readObject(0); } finally { if (in != null) in.close(); } } else { result = null; } } catch (Throwable t) { result = t; } return result; } | 16,028 |
0 | private void sendFile(File file, HttpServletResponse response) throws IOException { response.setContentLength((int) file.length()); InputStream inputStream = null; try { inputStream = new FileInputStream(file); IOUtils.copy(inputStream, response.getOutputStream()); } finally { IOUtils.closeQuietly(inputStream); } } | public void run() { try { Debug.log("Integrity test", "Getting MD5 instance"); MessageDigest m = MessageDigest.getInstance("MD5"); Debug.log("Integrity test", "Creating URL " + target); URL url = new URL(this.target); Debug.log("Integrity test", "Setting up connection"); URLConnection urlConnection = url.openConnection(); InputStream in = urlConnection.getInputStream(); byte[] buffer = new byte[1024]; int numRead; int fileSize = 0; Debug.log("Integrity test", "Reading file"); while ((numRead = in.read(buffer)) != -1) { m.update(buffer, 0, numRead); fileSize += numRead; } in.close(); Debug.log("Integrity test", "File read: " + fileSize + " bytes"); Debug.log("Integrity test", "calculating Hash"); String fileHash = new BigInteger(1, m.digest()).toString(16); if (fileHash.equals(this.hash)) { Debug.log("Integrity test", "Test OK"); this.result.put("Integrity", "OK"); } else { Debug.log("Integrity test", "Test failed: different hashes (" + fileHash + " but expected " + hash + ")"); this.result.put("Integrity", "FAIL"); } } catch (Exception e) { Debug.log("Integrity test", "Test failed"); this.result.put("Integrity", "FAIL"); } } | 16,029 |
0 | public void testResponseTimeout() throws Exception { server.enqueue(new MockResponse().setBody("ABC").clearHeaders().addHeader("Content-Length: 4")); server.enqueue(new MockResponse().setBody("DEF")); server.play(); URLConnection urlConnection = server.getUrl("/").openConnection(); urlConnection.setReadTimeout(1000); InputStream in = urlConnection.getInputStream(); assertEquals('A', in.read()); assertEquals('B', in.read()); assertEquals('C', in.read()); try { in.read(); fail(); } catch (SocketTimeoutException expected) { } URLConnection urlConnection2 = server.getUrl("/").openConnection(); InputStream in2 = urlConnection2.getInputStream(); assertEquals('D', in2.read()); assertEquals('E', in2.read()); assertEquals('F', in2.read()); assertEquals(-1, in2.read()); assertEquals(0, server.takeRequest().getSequenceNumber()); assertEquals(0, server.takeRequest().getSequenceNumber()); } | private void loadDefaultDrivers() { final URL url = _app.getResources().getDefaultDriversUrl(); try { InputStreamReader isr = new InputStreamReader(url.openStream()); try { _cache.load(isr); } finally { isr.close(); } } catch (Exception ex) { final Logger logger = _app.getLogger(); logger.showMessage(Logger.ILogTypes.ERROR, "Error loading default driver file: " + url != null ? url.toExternalForm() : ""); logger.showMessage(Logger.ILogTypes.ERROR, ex); } } | 16,030 |
1 | public static void copy(File in, File out) throws IOException { FileChannel ic = new FileInputStream(in).getChannel(); FileChannel oc = new FileOutputStream(out).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } | public void updateDb(int scriptNumber) throws SQLException, IOException { String pathName = updatesPackage.replace(".", "/"); InputStream in = getClass().getClassLoader().getResourceAsStream(pathName + "/" + scriptNumber + ".sql"); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); String script = out.toString("UTF-8"); String[] statements = script.split(";"); for (String statement : statements) { getJdbcTemplate().execute(statement); } } | 16,031 |
1 | public static void copyTo(File inFile, File outFile) throws IOException { char[] cbuff = new char[32768]; BufferedReader reader = new BufferedReader(new FileReader(inFile)); BufferedWriter writer = new BufferedWriter(new FileWriter(outFile)); int readedBytes = 0; long absWrittenBytes = 0; while ((readedBytes = reader.read(cbuff, 0, cbuff.length)) != -1) { writer.write(cbuff, 0, readedBytes); absWrittenBytes += readedBytes; } reader.close(); writer.close(); } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 16,032 |
0 | protected byte[] createFileID() { try { COSDocument cosDoc = cosGetDoc(); if (cosDoc == null) { return null; } ILocator locator = cosDoc.getLocator(); if (locator == null) { return null; } IRandomAccess ra = cosDoc.stGetDoc().getRandomAccess(); if (ra == null) { ra = new RandomAccessByteArray(StringTools.toByteArray("DummyValue")); } MessageDigest digest = MessageDigest.getInstance("MD5"); long time = System.currentTimeMillis(); digest.update(String.valueOf(time).getBytes()); digest.update(locator.getFullName().getBytes()); digest.update(String.valueOf(ra.getLength()).getBytes()); COSInfoDict infoDict = getInfoDict(); if (infoDict != null) { for (Iterator it = infoDict.cosGetDict().iterator(); it.hasNext(); ) { COSObject object = (COSObject) it.next(); digest.update(object.stringValue().getBytes()); } } return digest.digest(); } catch (Exception e) { throw new IllegalStateException(e); } } | public APIResponse delete(String id) throws Exception { APIResponse response = new APIResponse(); connection = (HttpURLConnection) new URL(url + "/api/record/delete/" + id).openConnection(); connection.setRequestMethod("DELETE"); connection.setConnectTimeout(TIMEOUT); connection.connect(); if (connection.getResponseCode() == HttpURLConnection.HTTP_OK) { response.setDone(true); response.setMessage("Record Deleted!"); } else { response.setDone(false); response.setMessage("Delete Record Error Code: Http (" + connection.getResponseCode() + ")"); } connection.disconnect(); return response; } | 16,033 |
1 | public static void main(String[] args) throws Exception { String infile = "C:\\copy.sql"; String outfile = "C:\\copy.txt"; FileInputStream fin = new FileInputStream(infile); FileOutputStream fout = new FileOutputStream(outfile); FileChannel fcin = fin.getChannel(); FileChannel fcout = fout.getChannel(); ByteBuffer buffer = ByteBuffer.allocate(1024); while (true) { buffer.clear(); int r = fcin.read(buffer); if (r == -1) { break; } buffer.flip(); fcout.write(buffer); } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 16,034 |
0 | private FTPClient getClient() throws SocketException, IOException { FTPClient ftp = new FTPClient(); ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out))); ftp.setDefaultPort(getPort()); ftp.connect(getIp()); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { log.warn("FTP server refused connection: {}", getIp()); ftp.disconnect(); return null; } if (!ftp.login(getUsername(), getPassword())) { log.warn("FTP server refused login: {}, user: {}", getIp(), getUsername()); ftp.logout(); ftp.disconnect(); return null; } ftp.setControlEncoding(getEncoding()); ftp.setFileType(FTP.BINARY_FILE_TYPE); ftp.enterLocalPassiveMode(); return ftp; } | private int mergeFiles(Merge merge) throws MojoExecutionException { String encoding = DEFAULT_ENCODING; if (merge.getEncoding() != null && merge.getEncoding().length() > 0) { encoding = merge.getEncoding(); } int numMergedFiles = 0; Writer ostream = null; FileOutputStream fos = null; try { fos = new FileOutputStream(merge.getTargetFile(), true); ostream = new OutputStreamWriter(fos, encoding); BufferedWriter output = new BufferedWriter(ostream); for (String orderingName : this.orderingNames) { List<File> files = this.orderedFiles.get(orderingName); if (files != null) { getLog().info("Appending: " + files.size() + " files that matched the name: " + orderingName + " to the target file: " + merge.getTargetFile().getAbsolutePath() + "..."); for (File file : files) { String fileName = file.getName(); getLog().info("Appending file: " + fileName + " to the target file: " + merge.getTargetFile().getAbsolutePath() + "..."); InputStream input = null; try { input = new FileInputStream(file); if (merge.getSeparator() != null && merge.getSeparator().trim().length() > 0) { String replaced = merge.getSeparator().trim(); replaced = replaced.replace("\n", ""); replaced = replaced.replace("\t", ""); replaced = replaced.replace("#{file.name}", fileName); replaced = replaced.replace("#{parent.name}", file.getParentFile() != null ? file.getParentFile().getName() : ""); replaced = replaced.replace("\\n", "\n"); replaced = replaced.replace("\\t", "\t"); getLog().debug("Appending separator: " + replaced); IOUtils.copy(new StringReader(replaced), output); } IOUtils.copy(input, output, encoding); } catch (IOException ioe) { throw new MojoExecutionException("Failed to append file: " + fileName + " to output file", ioe); } finally { IOUtils.closeQuietly(input); } numMergedFiles++; } } } output.flush(); } catch (IOException ioe) { throw new MojoExecutionException("Failed to open stream file to output file: " + merge.getTargetFile().getAbsolutePath(), ioe); } finally { if (fos != null) { IOUtils.closeQuietly(fos); } if (ostream != null) { IOUtils.closeQuietly(ostream); } } return numMergedFiles; } | 16,035 |
0 | public void elimina(Pedido pe) throws errorSQL, errorConexionBD { System.out.println("GestorPedido.elimina()"); int id = pe.getId(); String sql; Statement stmt = null; try { gd.begin(); sql = "DELETE FROM pedido WHERE id=" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); System.out.println("executeUpdate"); gd.commit(); System.out.println("commit"); stmt.close(); } catch (SQLException e) { gd.rollback(); throw new errorSQL(e.toString()); } catch (errorConexionBD e) { System.err.println("Error en GestorPedido.elimina(): " + e); } catch (errorSQL e) { System.err.println("Error en GestorPedido.elimina(): " + e); } } | private HttpURLConnection makeGetRequest(String action, Object... parameters) throws IOException { StringBuffer request = new StringBuffer(remoteUrl); HTMLUtils.appendQuery(request, VERSION_PARAM, CLIENT_VERSION); HTMLUtils.appendQuery(request, ACTION_PARAM, action); for (int i = 0; i < parameters.length; i += 2) { HTMLUtils.appendQuery(request, String.valueOf(parameters[i]), String.valueOf(parameters[i + 1])); } String requestStr = request.toString(); URLConnection conn; if (requestStr.length() < MAX_URL_LENGTH) { URL url = new URL(requestStr); conn = url.openConnection(); } else { int queryPos = requestStr.indexOf('?'); byte[] query = requestStr.substring(queryPos + 1).getBytes(HTTPUtils.DEFAULT_CHARSET); URL url = new URL(requestStr.substring(0, queryPos)); conn = url.openConnection(); conn.setDoOutput(true); conn.setDoInput(true); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); conn.setRequestProperty("Content-Length", Integer.toString(query.length)); OutputStream outputStream = new BufferedOutputStream(conn.getOutputStream()); outputStream.write(query); outputStream.close(); } return (HttpURLConnection) conn; } | 16,036 |
1 | public static void rewrite(String[] args) throws IOException, CodeCheckException { ClassWriter writer = new ClassWriter(); writer.readClass(new FileInputStream(args[0])); for (Iterator i = writer.getMethods().iterator(); i.hasNext(); ) { MethodInfo method = (MethodInfo) i.next(); CodeAttribute attribute = method.getCodeAttribute(); int origStack = attribute.getMaxStack(); System.out.print(method.getName()); attribute.codeCheck(); System.out.println(" " + origStack + " " + attribute.getMaxStack()); } BufferedOutputStream outStream = new BufferedOutputStream(new FileOutputStream(args[1])); writer.writeClass(outStream); outStream.close(); } | @Override public String transformSingleFile(X3DEditorSupport.X3dEditor xed) { Node[] node = xed.getActivatedNodes(); X3DDataObject dob = (X3DDataObject) xed.getX3dEditorSupport().getDataObject(); FileObject mySrc = dob.getPrimaryFile(); File mySrcF = FileUtil.toFile(mySrc); File myOutF = new File(mySrcF.getParentFile(), mySrc.getName() + ".x3d.gz"); TransformListener co = TransformListener.getInstance(); co.message(NbBundle.getMessage(getClass(), "Gzip_compression_starting")); co.message(NbBundle.getMessage(getClass(), "Saving_as_") + myOutF.getAbsolutePath()); co.moveToFront(); co.setNode(node[0]); try { FileInputStream fis = new FileInputStream(mySrcF); GZIPOutputStream gzos = new GZIPOutputStream(new FileOutputStream(myOutF)); byte[] buf = new byte[4096]; int ret; while ((ret = fis.read(buf)) > 0) gzos.write(buf, 0, ret); gzos.close(); } catch (Exception ex) { co.message(NbBundle.getMessage(getClass(), "Exception:__") + ex.getLocalizedMessage()); return null; } co.message(NbBundle.getMessage(getClass(), "Gzip_compression_complete")); return myOutF.getAbsolutePath(); } | 16,037 |
0 | private static void salvarArtista(Artista artista) throws Exception { Connection conn = null; PreparedStatement ps = null; try { conn = C3P0Pool.getConnection(); String sql = "insert into artista VALUES (?,?,?,?,?,?,?)"; ps = conn.prepareStatement(sql); ps.setInt(1, artista.getNumeroInscricao()); ps.setString(2, artista.getNome()); ps.setBoolean(3, artista.isSexo()); ps.setString(4, artista.getEmail()); ps.setString(5, artista.getObs()); ps.setString(6, artista.getTelefone()); ps.setNull(7, Types.INTEGER); ps.executeUpdate(); salvarEndereco(conn, ps, artista); conn.commit(); } catch (Exception e) { if (conn != null) conn.rollback(); throw e; } finally { close(conn, ps); } } | public static String getSHA1(String s) { try { MessageDigest sha1 = MessageDigest.getInstance("SHA1"); sha1.update(s.toLowerCase().getBytes()); return HexString.bufferToHex(sha1.digest()); } catch (NoSuchAlgorithmException e) { System.err.println("Error grave al inicializar SHA1"); e.printStackTrace(); return "!!"; } } | 16,038 |
0 | private void _PostParser(Document document, AnnotationManager annoMan, Document htmldoc, String baseurl) { xformer = annoMan.getTransformer(); builder = annoMan.getBuilder(); String annohash = ""; if (document == null) return; NodeList ndlist = document.getElementsByTagNameNS(annoNS, "body"); if (ndlist.getLength() != 1) { System.out.println("Sorry Annotation Body was found " + ndlist.getLength() + " times"); return; } Element bodynode = (Element) ndlist.item(0); Node htmlNode = bodynode.getElementsByTagName("html").item(0); if (htmlNode == null) htmlNode = bodynode.getElementsByTagName("HTML").item(0); Document newdoc = builder.newDocument(); Element rootelem = newdoc.createElementNS(rdfNS, "r:RDF"); rootelem.setAttribute("xmlns:r", rdfNS); rootelem.setAttribute("xmlns:a", annoNS); rootelem.setAttribute("xmlns:d", dubNS); rootelem.setAttribute("xmlns:t", threadNS); newdoc.appendChild(rootelem); Element tmpelem; NodeList tmpndlist; Element annoElem = newdoc.createElementNS(annoNS, "a:Annotation"); rootelem.appendChild(annoElem); tmpelem = (Element) document.getElementsByTagNameNS(annoNS, "context").item(0); String context = tmpelem.getChildNodes().item(0).getNodeValue(); annoElem.setAttributeNS(annoNS, "a:context", context); NodeList elemcontl = tmpelem.getElementsByTagNameNS(alNS, "context-element"); Node ncontext_element = null; if (elemcontl.getLength() > 0) { Node old_context_element = elemcontl.item(0); ncontext_element = newdoc.importNode(old_context_element, true); } tmpndlist = document.getElementsByTagNameNS(dubNS, "title"); annoElem.setAttributeNS(dubNS, "d:title", tmpndlist.getLength() > 0 ? tmpndlist.item(0).getChildNodes().item(0).getNodeValue() : "Default"); tmpelem = (Element) document.getElementsByTagNameNS(dubNS, "creator").item(0); annoElem.setAttributeNS(dubNS, "d:creator", tmpelem.getChildNodes().item(0).getNodeValue()); tmpelem = (Element) document.getElementsByTagNameNS(annoNS, "created").item(0); annoElem.setAttributeNS(annoNS, "a:created", tmpelem.getChildNodes().item(0).getNodeValue()); tmpelem = (Element) document.getElementsByTagNameNS(dubNS, "date").item(0); annoElem.setAttributeNS(dubNS, "d:date", tmpelem.getChildNodes().item(0).getNodeValue()); tmpndlist = document.getElementsByTagNameNS(dubNS, "language"); String language = (tmpndlist.getLength() > 0 ? tmpndlist.item(0).getChildNodes().item(0).getNodeValue() : "en"); annoElem.setAttributeNS(dubNS, "d:language", language); Node typen = newdoc.importNode(document.getElementsByTagNameNS(rdfNS, "type").item(0), true); annoElem.appendChild(typen); Element contextn = newdoc.createElementNS(annoNS, "a:context"); contextn.setAttributeNS(rdfNS, "r:resource", context); annoElem.appendChild(contextn); Node annotatesn = newdoc.importNode(document.getElementsByTagNameNS(annoNS, "annotates").item(0), true); annoElem.appendChild(annotatesn); Element newbodynode = newdoc.createElementNS(annoNS, "a:body"); annoElem.appendChild(newbodynode); if (ncontext_element != null) { contextn.appendChild(ncontext_element); } else { System.out.println("No context element found, we create one..."); try { XPointer xptr = new XPointer(htmldoc); NodeRange xprange = xptr.getRange(context, htmldoc); Element context_elem = newdoc.createElementNS(alNS, "al:context-element"); context_elem.setAttributeNS(alNS, "al:text", xprange.getContentString()); context_elem.appendChild(newdoc.createTextNode(annoMan.generateContextString(xprange))); contextn.appendChild(context_elem); } catch (XPointerRangeException e2) { e2.printStackTrace(); } } WordFreq wf = new WordFreq(annoMan.extractTextFromNode(htmldoc)); Element docident = newdoc.createElementNS(alNS, "al:document-identifier"); annotatesn.appendChild(docident); docident.setAttributeNS(alNS, "al:orig-url", ((Element) annotatesn).getAttributeNS(rdfNS, "resource")); docident.setAttributeNS(alNS, "al:version", "1"); Iterator it = null; it = wf.getSortedWordlist(); Map.Entry ent; String word; int count; int i = 0; while (it.hasNext()) { ent = (Map.Entry) it.next(); word = ((String) ent.getKey()); count = ((Counter) ent.getValue()).count; if ((word.length() > 4) && (i < 10)) { Element wordelem = newdoc.createElementNS(alNS, "al:word"); wordelem.setAttributeNS(alNS, "al:freq", Integer.toString(count)); wordelem.appendChild(newdoc.createTextNode(word)); docident.appendChild(wordelem); i++; } } try { StringWriter strw = new StringWriter(); MessageDigest messagedigest = MessageDigest.getInstance("MD5"); xformer.transform(new DOMSource(newdoc), new StreamResult(strw)); messagedigest.update(strw.toString().getBytes()); byte[] md5bytes = messagedigest.digest(); annohash = ""; for (int b = 0; b < md5bytes.length; b++) { String s = Integer.toHexString(md5bytes[b] & 0xFF); annohash = annohash + ((s.length() == 1) ? "0" + s : s); } this.annohash = annohash; annoElem.setAttribute("xmlns:al", alNS); annoElem.setAttributeNS(alNS, "al:id", getAnnohash()); Location = (baseurl + "/annotation/" + getAnnohash()); annoElem.setAttributeNS(rdfNS, "r:about", Location); newbodynode.setAttributeNS(rdfNS, "r:resource", baseurl + "/annotation/body/" + getAnnohash()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (TransformerException e) { e.printStackTrace(); } annoMan.store(newdoc.getDocumentElement()); annoMan.createAnnoResource(newdoc.getDocumentElement(), getAnnohash()); if (htmlNode != null) annoMan.createAnnoBody(htmlNode, getAnnohash()); Location = (this.baseurl + "/annotation/" + getAnnohash()); annoElem.setAttributeNS(rdfNS, "r:about", Location); this.responseDoc = newdoc; } | public void SetRoles(Connection conn, User user, String[] roles) throws NpsException { if (!IsSysAdmin() && !IsLocalAdmin()) throw new NpsException(ErrorHelper.ACCESS_NOPRIVILEGE); PreparedStatement pstmt = null; ResultSet rs = null; try { String sql = "delete from userrole where userid=?"; pstmt = conn.prepareStatement(sql); pstmt.setString(1, user.id); pstmt.executeUpdate(); if (roles != null && roles.length > 0) { try { pstmt.close(); } catch (Exception e1) { } sql = "insert into userrole(userid,roleid) values(?,?)"; pstmt = conn.prepareStatement(sql); for (int i = 0; i < roles.length; i++) { if (roles[i] != null && roles[i].length() > 0) { pstmt.setString(1, user.GetId()); pstmt.setString(2, roles[i]); pstmt.executeUpdate(); } } } try { pstmt.close(); } catch (Exception e1) { } if (user.roles_by_name != null) user.roles_by_name.clear(); if (user.roles_by_id != null) user.roles_by_id.clear(); if (roles != null && roles.length > 0) { sql = "select b.* from UserRole a,Role b where a.roleid = b.id and a.userid=?"; pstmt = conn.prepareStatement(sql); pstmt.setString(1, user.id); rs = pstmt.executeQuery(); while (rs.next()) { if (user.roles_by_name == null) user.roles_by_name = new Hashtable(); if (user.roles_by_id == null) user.roles_by_id = new Hashtable(); user.roles_by_name.put(rs.getString("name"), rs.getString("id")); user.roles_by_id.put(rs.getString("id"), rs.getString("name")); } } } catch (Exception e) { try { conn.rollback(); } catch (Exception e1) { } com.microfly.util.DefaultLog.error(e); } finally { if (rs != null) try { rs.close(); } catch (Exception e) { } if (pstmt != null) try { pstmt.close(); } catch (Exception e1) { } } } | 16,039 |
0 | @Override public void run() { File file = new File(LogHandler.path); FileFilter filter = new FileFilter() { @Override public boolean accept(File file) { GregorianCalendar cal = new GregorianCalendar(); cal.setTime(new Date()); cal.add(GregorianCalendar.DAY_OF_YEAR, -1); String oldTime = LogHandler.dateFormat.format(cal.getTime()); return file.getName().toLowerCase().startsWith(oldTime); } }; File[] list = file.listFiles(filter); if (list.length > 0) { FileInputStream in; int read = 0; byte[] data = new byte[1024]; for (int i = 0; i < list.length; i++) { try { in = new FileInputStream(LogHandler.path + list[i].getName()); GZIPOutputStream out = new GZIPOutputStream(new FileOutputStream(LogHandler.path + list[i].getName() + ".temp")); while ((read = in.read(data, 0, 1024)) != -1) out.write(data, 0, read); in.close(); out.close(); new File(LogHandler.path + list[i].getName() + ".temp").renameTo(new File(LogHandler.path + list[i].getName() + ".gz")); list[i].delete(); } catch (FileNotFoundException e) { TrackingServer.incExceptionCounter(); e.printStackTrace(); } catch (IOException ioe) { } } } } | public static String urlPost(Map<String, String> paraMap, String urlStr) throws IOException { String strParam = ""; for (Map.Entry<String, String> entry : paraMap.entrySet()) { strParam = strParam + (entry.getKey() + "=" + entry.getValue()) + "&"; } URL url = new URL(urlStr); URLConnection connection = url.openConnection(); connection.setDoOutput(true); OutputStreamWriter out = new OutputStreamWriter(connection.getOutputStream(), "utf-8"); out.write(strParam); out.flush(); out.close(); String sCurrentLine; String sTotalString; sCurrentLine = ""; sTotalString = ""; InputStream l_urlStream; l_urlStream = connection.getInputStream(); BufferedReader l_reader = new BufferedReader(new InputStreamReader(l_urlStream)); while ((sCurrentLine = l_reader.readLine()) != null) { sTotalString += sCurrentLine + "\r\n"; } System.out.println(sTotalString); return sTotalString; } | 16,040 |
0 | protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String servletPath = req.getServletPath(); String requestURI = req.getRequestURI(); String resource = requestURI.substring(requestURI.indexOf(servletPath) + servletPath.length()); URL url = ClassResource.get(resourceDirectory + resource); try { File file = null; JarEntry jarEntry = null; JarFile jarFile = null; if (!url.toExternalForm().startsWith("jar:")) { file = new File(url.toURI()); } else { jarFile = ((JarURLConnection) url.openConnection()).getJarFile(); String[] jarURL = url.toExternalForm().split("!"); jarEntry = jarFile.getJarEntry(jarURL[1].substring(1)); } if (file != null && file.isDirectory()) { PrintWriter writer = resp.getWriter(); resp.setContentType("text/html"); DevelUtils.writePageBegin(writer); DevelUtils.writeTitleAndHeaderEnd(writer, "Makumba resources"); if (SourceViewServlet.redirected(req, resp, servletPath)) { return; } String relativeDirectory = file.getName(); if (file.getAbsolutePath().indexOf(resourceDirectory) != -1) { relativeDirectory = file.getAbsolutePath().substring(file.getAbsolutePath().indexOf(resourceDirectory)); } SourceViewServlet.printDirlistingHeader(writer, file.getCanonicalPath(), relativeDirectory); if (!(relativeDirectory.equals(resourceDirectory))) { writer.println("<b><a href=\"../\">../</a></b> (up one level)"); } SourceViewServlet.processDirectory(writer, file, null); String[] list = file.list(); Arrays.sort(list); for (int i = 0; i < list.length; i++) { String s = list[i]; File f = new File(file.getAbsolutePath() + File.separator + s); if (f.isFile()) { writer.println("<b><a href=\"" + s + "\">" + s + "</a></b>"); } } writer.println("</pre>"); DevelUtils.writePageEnd(writer); resp.setHeader("Last-Modified", dfLastModified.format(new Date())); return; } else if (jarEntry != null && jarEntry.isDirectory()) { Enumeration<JarEntry> entries = jarFile.entries(); ArrayList<String> files = new ArrayList<String>(); ArrayList<String> directories = new ArrayList<String>(); PrintWriter writer = resp.getWriter(); resp.setContentType("text/html"); DevelUtils.writePageBegin(writer); DevelUtils.writeTitleAndHeaderEnd(writer, "Makumba resources"); if (SourceViewServlet.redirected(req, resp, servletPath)) { return; } String relativeDirectory = jarEntry.getName(); SourceViewServlet.printDirlistingHeader(writer, url.toExternalForm(), relativeDirectory); if (!relativeDirectory.equals(resourceDirectory) && !relativeDirectory.equals(resourceDirectory + "/")) { writer.println("<b><a href=\"../\">../</a></b> (up one level)"); } while (entries.hasMoreElements()) { JarEntry entry = (JarEntry) entries.nextElement(); if (entry.getName().startsWith(relativeDirectory)) { String s = entry.getName().substring(relativeDirectory.length()); while (s.length() > 0 && s.startsWith("/")) { s = s.substring(1); } if (s.indexOf("/") == -1) { if (s.length() > 0) { files.add(s); } } else if (s.indexOf("/") == s.lastIndexOf("/") && s.endsWith("/")) { if (s.endsWith("/")) { s = s.substring(0, s.length() - 1); } if (s.length() > 0) { directories.add(s); } } } } for (String string : directories) { writer.println("<b><a href=\"" + string + "/\">" + string + "/</a></b>"); } for (String string : files) { writer.println("<b><a href=\"" + string + "\">" + string + "</a></b>"); } writer.println("</pre>"); DevelUtils.writePageEnd(writer); resp.setHeader("Last-Modified", dfLastModified.format(new Date())); return; } else { final Date lastModified; if (url.toExternalForm().startsWith("jar:")) { JarFile jf = ((JarURLConnection) url.openConnection()).getJarFile(); String[] jarURL = url.toExternalForm().split("!"); lastModified = new Date(jf.getJarEntry(jarURL[1].substring(1)).getTime()); } else { lastModified = new Date(new File(url.toURI()).lastModified()); } resp.setHeader("Last-Modified", dfLastModified.format(lastModified)); resp.setContentType(getContentType(url)); Object cachedResource = NamedResources.getStaticCache(makumbaResources).getResource(resource); ServletOutputStream outputStream = resp.getOutputStream(); if (isBinary(url)) { for (int i = 0; i < ((byte[]) cachedResource).length; i++) { outputStream.write(((byte[]) cachedResource)[i]); } } else { outputStream.print(cachedResource.toString()); } } } catch (URISyntaxException e) { e.printStackTrace(); } } | private String getLatestVersion(URL url) throws IOException { HttpURLConnection con = (HttpURLConnection) url.openConnection(); con.connect(); BufferedReader br = new BufferedReader(new InputStreamReader(new BufferedInputStream(con.getInputStream()))); String lines = ""; String line = null; while ((line = br.readLine()) != null) { lines += line; } con.disconnect(); return lines; } | 16,041 |
1 | private String generateStorageDir(String stringToBeHashed) throws NoSuchAlgorithmException { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(stringToBeHashed.getBytes()); byte[] hashedKey = digest.digest(); return Util.encodeArrayToHexadecimalString(hashedKey); } | public static String digest(String value, String algorithm) throws Exception { MessageDigest algo = MessageDigest.getInstance(algorithm); algo.reset(); algo.update(value.getBytes("UTF-8")); return StringTool.byteArrayToString(algo.digest()); } | 16,042 |
1 | void run(String[] args) { InputStream istream = System.in; System.out.println("TradeMaximizer " + version); String filename = parseArgs(args, false); if (filename != null) { System.out.println("Input from: " + filename); try { if (filename.startsWith("http:") || filename.startsWith("ftp:")) { URL url = new URL(filename); istream = url.openStream(); } else istream = new FileInputStream(filename); } catch (IOException ex) { fatalError(ex.toString()); } } List<String[]> wantLists = readWantLists(istream); if (wantLists == null) return; if (options.size() > 0) { System.out.print("Options:"); for (String option : options) System.out.print(" " + option); System.out.println(); } System.out.println(); try { MessageDigest digest = MessageDigest.getInstance("MD5"); for (String[] wset : wantLists) { for (String w : wset) { digest.update((byte) ' '); digest.update(w.getBytes()); } digest.update((byte) '\n'); } System.out.println("Input Checksum: " + toHexString(digest.digest())); } catch (NoSuchAlgorithmException ex) { } parseArgs(args, true); if (iterations > 1 && seed == -1) { seed = System.currentTimeMillis(); System.out.println("No explicit SEED, using " + seed); } if (!(metric instanceof MetricSumSquares) && priorityScheme != NO_PRIORITIES) System.out.println("Warning: using priorities with the non-default metric is normally worthless"); buildGraph(wantLists); if (showMissing && officialNames != null && officialNames.size() > 0) { for (String name : usedNames) officialNames.remove(name); List<String> missing = new ArrayList<String>(officialNames); Collections.sort(missing); for (String name : missing) { System.out.println("**** Missing want list for official name " + name); } System.out.println(); } if (showErrors && errors.size() > 0) { Collections.sort(errors); System.out.println("ERRORS:"); for (String error : errors) System.out.println(error); System.out.println(); } long startTime = System.currentTimeMillis(); graph.removeImpossibleEdges(); List<List<Graph.Vertex>> bestCycles = graph.findCycles(); int bestMetric = metric.calculate(bestCycles); if (iterations > 1) { System.out.println(metric); graph.saveMatches(); for (int i = 0; i < iterations - 1; i++) { graph.shuffle(); List<List<Graph.Vertex>> cycles = graph.findCycles(); int newMetric = metric.calculate(cycles); if (newMetric < bestMetric) { bestMetric = newMetric; bestCycles = cycles; graph.saveMatches(); System.out.println(metric); } else if (verbose) System.out.println("# " + metric); } System.out.println(); graph.restoreMatches(); } long stopTime = System.currentTimeMillis(); displayMatches(bestCycles); if (showElapsedTime) System.out.println("Elapsed time = " + (stopTime - startTime) + "ms"); } | public static String encrypt(String input) { try { MessageDigest md = MessageDigest.getInstance("SHA1"); md.update(input.getBytes("UTF-8")); return toHexString(md.digest()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } return null; } | 16,043 |
1 | public void backup(File source) throws BackupException { try { int index = source.getAbsolutePath().lastIndexOf("."); if (index == -1) return; File dest = new File(source.getAbsolutePath().substring(0, index) + ".bak"); FileChannel srcChannel = new FileInputStream(source).getChannel(); FileChannel dstChannel = new FileOutputStream(dest).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (Exception ex) { throw new BackupException(ex.getMessage(), ex, source); } } | private String[] verifyConnection(Socket clientConnection) throws Exception { List<String> requestLines = new ArrayList<String>(); InputStream is = clientConnection.getInputStream(); BufferedReader in = new BufferedReader(new InputStreamReader(is)); StringTokenizer st = new StringTokenizer(in.readLine()); if (!st.hasMoreTokens()) { throw new IllegalArgumentException("There's no method token in this connection"); } String method = st.nextToken(); if (!st.hasMoreTokens()) { throw new IllegalArgumentException("There's no URI token in this connection"); } String uri = decodePercent(st.nextToken()); if (!st.hasMoreTokens()) { throw new IllegalArgumentException("There's no version token in this connection"); } String version = st.nextToken(); Properties parms = new Properties(); int qmi = uri.indexOf('?'); if (qmi >= 0) { decodeParms(uri.substring(qmi + 1), parms); uri = decodePercent(uri.substring(0, qmi)); } String params = ""; if (parms.size() > 0) { params = "?"; for (Object key : parms.keySet()) { params = params + key + "=" + parms.getProperty(((String) key)) + "&"; } params = params.substring(0, params.length() - 1).replace(" ", "%20"); } logger.debug("HTTP Request: " + method + " " + uri + params + " " + version); requestLines.add(method + " " + uri + params + " " + version); Properties headerVars = new Properties(); String line; String currentBoundary = null; Stack<String> boundaryStack = new Stack<String>(); boolean readingBoundary = false; String additionalData = ""; while (in.ready() && (line = in.readLine()) != null) { if (line.equals("") && (headerVars.get("Content-Type") == null || headerVars.get("Content-Length") == null)) { break; } logger.debug("HTTP Request Header: " + line); if (line.contains(": ")) { String vals[] = line.split(": "); headerVars.put(vals[0].trim(), vals[1].trim()); } if (!readingBoundary && line.contains(": ")) { if (line.contains("boundary=")) { currentBoundary = line.split("boundary=")[1].trim(); boundaryStack.push("--" + currentBoundary); } continue; } else if (line.equals("") && boundaryStack.isEmpty()) { int val = Integer.parseInt((String) headerVars.get("Content-Length")); if (headerVars.getProperty("Content-Type").contains("x-www-form-urlencoded")) { char buf[] = new char[val]; int read = in.read(buf); line = String.valueOf(buf, 0, read); additionalData = line; logger.debug("HTTP Request Header Form Parameters: " + line); } } else if (line.equals(boundaryStack.peek()) && !readingBoundary) { readingBoundary = true; } else if (line.equals(boundaryStack.peek()) && readingBoundary) { readingBoundary = false; } else if (line.contains(": ") && readingBoundary) { if (method.equalsIgnoreCase("PUT")) { if (line.contains("form-data; ")) { String formValues = line.split("form-data; ")[1]; for (String varValue : formValues.replace("\"", "").split("; ")) { String[] vV = varValue.split("="); vV[0] = decodePercent(vV[0]); vV[1] = decodePercent(vV[1]); headerVars.put(vV[0], vV[1]); } } } } else if (line.contains("") && readingBoundary && !boundaryStack.isEmpty() && headerVars.get("filename") != null) { int length = Integer.parseInt(headerVars.getProperty("Content-Length")); if (headerVars.getProperty("Content-Transfer-Encoding").contains("binary")) { File uploadFilePath = new File(VOctopusConfigurationManager.WebServerProperties.HTTPD_CONF.getPropertyValue("TempDirectory")); if (!uploadFilePath.exists()) { logger.error("Temporaty dir does not exist: " + uploadFilePath.getCanonicalPath()); } if (!uploadFilePath.isDirectory()) { logger.error("Temporary dir is not a directory: " + uploadFilePath.getCanonicalPath()); } if (!uploadFilePath.canWrite()) { logger.error("VOctopus Webserver doesn't have permissions to write on temporary dir: " + uploadFilePath.getCanonicalPath()); } FileOutputStream out = null; try { String putUploadPath = uploadFilePath.getAbsolutePath() + "/" + headerVars.getProperty("filename"); out = new FileOutputStream(putUploadPath); OutputStream outf = new BufferedOutputStream(out); int c; while (in.ready() && (c = in.read()) != -1 && length-- > 0) { outf.write(c); } } finally { if (out != null) { out.close(); } } File copied = new File(VOctopusConfigurationManager.getInstance().getDocumentRootPath() + uri + headerVars.get("filename")); File tempFile = new File(VOctopusConfigurationManager.WebServerProperties.HTTPD_CONF.getPropertyValue("TempDirectory") + "/" + headerVars.get("filename")); FileChannel ic = new FileInputStream(tempFile.getAbsolutePath()).getChannel(); FileChannel oc = new FileOutputStream(copied.getAbsolutePath()).getChannel(); ic.transferTo(0, ic.size(), oc); ic.close(); oc.close(); } } } for (Object var : headerVars.keySet()) { requestLines.add(var + ": " + headerVars.get(var)); } if (!additionalData.equals("")) { requestLines.add("ADDITIONAL" + additionalData); } return requestLines.toArray(new String[requestLines.size()]); } | 16,044 |
1 | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileOutputStream fos = new FileOutputStream(out); FileChannel outChannel = fos.getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); fos.flush(); fos.close(); } } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 16,045 |
1 | public static String sendRequest(String urlstring) { URL url; String line; Log.i("DVBMonitor", "Please wait while receiving data from dvb..."); try { url = new URL(urlstring); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); if ((line = in.readLine()) != null) { return line; } else { return null; } } catch (Exception ex) { Log.e("DVBMonitor", ex.toString() + " while sending request to dvb"); return null; } } | public List<String> query(String query) throws IOException { List<String> list = new LinkedList<String>(); query = URLEncoder.encode(query, "UTF-8"); String queryurl = baseurl + "?type=tuples&lang=itql&format=csv&query=" + query; URL url = new URL(queryurl); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String line = reader.readLine(); while (line != null) { list.add(line); line = reader.readLine(); } reader.close(); return list; } | 16,046 |
1 | final void saveProject(Project project, final File file) { if (projectsList.contains(project)) { if (project.isDirty() || !file.getParentFile().equals(workspaceDirectory)) { try { if (!file.exists()) { if (!file.createNewFile()) throw new IOException("cannot create file " + file.getAbsolutePath()); } File tmpFile = File.createTempFile("JFPSM", ".tmp"); ZipOutputStream zoStream = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(file))); zoStream.setMethod(ZipOutputStream.DEFLATED); ZipEntry projectXMLEntry = new ZipEntry("project.xml"); projectXMLEntry.setMethod(ZipEntry.DEFLATED); zoStream.putNextEntry(projectXMLEntry); CustomXMLEncoder encoder = new CustomXMLEncoder(new BufferedOutputStream(new FileOutputStream(tmpFile))); encoder.writeObject(project); encoder.close(); int bytesIn; byte[] readBuffer = new byte[1024]; FileInputStream fis = new FileInputStream(tmpFile); while ((bytesIn = fis.read(readBuffer)) != -1) zoStream.write(readBuffer, 0, bytesIn); fis.close(); ZipEntry entry; String floorDirectory; for (FloorSet floorSet : project.getLevelSet().getFloorSetsList()) for (Floor floor : floorSet.getFloorsList()) { floorDirectory = "levelset/" + floorSet.getName() + "/" + floor.getName() + "/"; for (MapType type : MapType.values()) { entry = new ZipEntry(floorDirectory + type.getFilename()); entry.setMethod(ZipEntry.DEFLATED); zoStream.putNextEntry(entry); ImageIO.write(floor.getMap(type).getImage(), "png", zoStream); } } final String tileDirectory = "tileset/"; for (Tile tile : project.getTileSet().getTilesList()) for (int textureIndex = 0; textureIndex < tile.getMaxTextureCount(); textureIndex++) if (tile.getTexture(textureIndex) != null) { entry = new ZipEntry(tileDirectory + tile.getName() + textureIndex + ".png"); entry.setMethod(ZipEntry.DEFLATED); zoStream.putNextEntry(entry); ImageIO.write(tile.getTexture(textureIndex), "png", zoStream); } zoStream.close(); tmpFile.delete(); } catch (IOException ioe) { throw new RuntimeException("The project " + project.getName() + " cannot be saved!", ioe); } } } else throw new IllegalArgumentException("The project " + project.getName() + " is not handled by this project set!"); } | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | 16,047 |
0 | protected int executeUpdates(List<UpdateStatement> statements, OlVersionCheck olVersionCheck) throws DaoException { if (LOGGER.isDebugEnabled()) { LOGGER.debug("start executeUpdates"); } PreparedStatement stmt = null; Connection conn = null; int rowsAffected = 0; try { conn = ds.getConnection(); conn.setAutoCommit(false); conn.rollback(); conn.setTransactionIsolation(Connection.TRANSACTION_READ_COMMITTED); if (olVersionCheck != null) { stmt = conn.prepareStatement(olVersionCheck.getQuery()); stmt.setObject(1, olVersionCheck.getId()); ResultSet rs = stmt.executeQuery(); rs.next(); Number olVersion = (Number) rs.getObject("olVersion"); stmt.close(); stmt = null; if (olVersion.intValue() != olVersionCheck.getOlVersionToCheck().intValue()) { rowsAffected = -1; } } if (rowsAffected >= 0) { for (UpdateStatement query : statements) { stmt = conn.prepareStatement(query.getQuery()); if (query.getParams() != null) { for (int parameterIndex = 1; parameterIndex <= query.getParams().length; parameterIndex++) { Object object = query.getParams()[parameterIndex - 1]; stmt.setObject(parameterIndex, object); } } if (LOGGER.isDebugEnabled()) { LOGGER.debug(" **** Sending statement:\n" + query.getQuery()); } rowsAffected += stmt.executeUpdate(); stmt.close(); stmt = null; } } conn.commit(); conn.close(); conn = null; } catch (SQLException e) { if ("23000".equals(e.getSQLState())) { LOGGER.info("Integrity constraint violation", e); throw new UniqueConstaintException(); } throw new DaoException("error.databaseError", e); } finally { try { if (stmt != null) { LOGGER.debug("closing open statement!"); stmt.close(); } } catch (SQLException e) { throw new DaoException("error.databaseError", e); } finally { stmt = null; } try { if (conn != null) { LOGGER.debug("rolling back open connection!"); conn.rollback(); conn.setAutoCommit(true); conn.close(); } } catch (SQLException e) { throw new DaoException("error.databaseError", e); } finally { conn = null; } } if (LOGGER.isDebugEnabled()) { LOGGER.debug("finish executeUpdates"); } return rowsAffected; } | public static String md5(String text) { MessageDigest msgDigest = null; try { msgDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new IllegalStateException("System doesn't support MD5 algorithm."); } try { msgDigest.update(text.getBytes("utf-8")); } catch (UnsupportedEncodingException e) { throw new IllegalStateException("System doesn't support your EncodingException."); } byte[] bytes = msgDigest.digest(); String md5Str = new String(encodeHex(bytes)); return md5Str; } | 16,048 |
0 | static String fetchURLComposeExternPackageList(String urlpath, String pkglisturlpath) { String link = pkglisturlpath + "package-list"; try { boolean relative = isRelativePath(urlpath); readPackageList((new URL(link)).openStream(), urlpath, relative); } catch (MalformedURLException exc) { return getText("doclet.MalformedURL", link); } catch (IOException exc) { return getText("doclet.URL_error", link); } return null; } | public static String digest(String algorithm, String text) { MessageDigest mDigest = null; try { mDigest = MessageDigest.getInstance(algorithm); mDigest.update(text.getBytes(ENCODING)); } catch (NoSuchAlgorithmException nsae) { _log.error(nsae, nsae); } catch (UnsupportedEncodingException uee) { _log.error(uee, uee); } byte[] raw = mDigest.digest(); BASE64Encoder encoder = new BASE64Encoder(); return encoder.encode(raw); } | 16,049 |
0 | public void testExplicitHeaders() throws Exception { String headerString = "X-Foo=bar&X-Bar=baz%20foo"; HttpRequest expected = new HttpRequest(REQUEST_URL).addHeader("X-Foo", "bar").addHeader("X-Bar", "baz foo"); expect(pipeline.execute(expected)).andReturn(new HttpResponse(RESPONSE_BODY)); expect(request.getParameter(MakeRequestHandler.HEADERS_PARAM)).andReturn(headerString); replay(); handler.fetch(request, recorder); verify(); JSONObject results = extractJsonFromResponse(); assertEquals(HttpResponse.SC_OK, results.getInt("rc")); assertEquals(RESPONSE_BODY, results.get("body")); assertTrue(rewriter.responseWasRewritten()); } | private static final void copyFile(File srcFile, File destDir, byte[] buffer) { try { File destFile = new File(destDir, srcFile.getName()); InputStream in = new FileInputStream(srcFile); OutputStream out = new FileOutputStream(destFile); int bytesRead; while ((bytesRead = in.read(buffer)) != -1) out.write(buffer, 0, bytesRead); in.close(); out.close(); } catch (IOException ioe) { System.err.println("Couldn't copy file '" + srcFile + "' to directory '" + destDir + "'"); } } | 16,050 |
1 | public static void main(String args[]) { InputStream input = System.in; OutputStream output = System.out; if (args.length > 0) { try { input = new FileInputStream(args[0]); } catch (FileNotFoundException e) { System.err.println("Unable to open file: " + args[0]); System.exit(-1); } catch (IOException e) { System.err.println("Unable to access file: " + args[0]); System.exit(-1); } } if (args.length > 1) { try { output = new FileOutputStream(args[1]); } catch (FileNotFoundException e) { System.err.println("Unable to open file: " + args[1]); System.exit(-1); } catch (IOException e) { System.err.println("Unable to access file: " + args[1]); System.exit(-1); } } byte buffer[] = new byte[512]; int len; try { while ((len = input.read(buffer)) > 0) output.write(buffer, 0, len); } catch (IOException e) { System.err.println("Error copying file"); } finally { input.close(); output.close(); } } | public static void getResponseAsStream(String _url, Object _stringOrStream, OutputStream _stream, Map _headers, Map _params, String _contentType, int _timeout) throws IOException { if (_url == null || _url.length() <= 0) throw new IllegalArgumentException("Url can not be null."); String temp = _url.toLowerCase(); if (!temp.startsWith("http://") && !temp.startsWith("https://")) _url = "http://" + _url; HttpMethod method = null; if (_stringOrStream == null && (_params == null || _params.size() <= 0)) method = new GetMethod(_url); else method = new PostMethod(_url); HttpMethodParams params = ((HttpMethodBase) method).getParams(); if (params == null) { params = new HttpMethodParams(); ((HttpMethodBase) method).setParams(params); } if (_timeout < 0) params.setSoTimeout(0); else params.setSoTimeout(_timeout); if (_contentType != null && _contentType.length() > 0) { if (_headers == null) _headers = new HashMap(); _headers.put("Content-Type", _contentType); } if (_headers != null) { Iterator iter = _headers.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry) iter.next(); method.setRequestHeader((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof PostMethod && (_params != null && _params.size() > 0)) { Iterator iter = _params.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry) iter.next(); ((PostMethod) method).addParameter((String) entry.getKey(), (String) entry.getValue()); } } if (method instanceof EntityEnclosingMethod && _stringOrStream != null) { if (_stringOrStream instanceof InputStream) { RequestEntity entity = new InputStreamRequestEntity((InputStream) _stringOrStream); ((EntityEnclosingMethod) method).setRequestEntity(entity); } else { RequestEntity entity = new StringRequestEntity(_stringOrStream.toString(), _contentType, null); ((EntityEnclosingMethod) method).setRequestEntity(entity); } } HttpClient httpClient = new HttpClient(new org.apache.commons.httpclient.SimpleHttpConnectionManager()); try { int status = httpClient.executeMethod(method); if (status != HttpStatus.SC_OK) { if (status >= 500 && status < 600) throw new IOException("Remote service<" + _url + "> respose a error, status:" + status); } InputStream instream = method.getResponseBodyAsStream(); IOUtils.copy(instream, _stream); instream.close(); } catch (IOException err) { throw err; } finally { if (method != null) method.releaseConnection(); } } | 16,051 |
0 | public int addCollectionInstruction() throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; try { String sql = "insert into Instructions (Type, Operator) " + "values (1, 0)"; conn = fido.util.FidoDataSource.getConnection(); stmt = conn.createStatement(); stmt.executeUpdate(sql); return getCurrentId(stmt); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | static synchronized Person lookup(PhoneNumber number, String siteName) { Vector<Person> foundPersons = new Vector<Person>(5); if (number.isFreeCall()) { Person p = new Person("", "FreeCall"); p.addNumber(number); foundPersons.add(p); } else if (number.isSIPNumber() || number.isQuickDial()) { Person p = new Person(); p.addNumber(number); foundPersons.add(p); } else if (ReverseLookup.rlsMap.containsKey(number.getCountryCode())) { nummer = number.getAreaNumber(); rls_list = ReverseLookup.rlsMap.get(number.getCountryCode()); Debug.info("Begin reverselookup for: " + nummer); if (nummer.startsWith(number.getCountryCode())) nummer = nummer.substring(number.getCountryCode().length()); city = ""; for (int i = 0; i < rls_list.size(); i++) { yield(); rls = rls_list.get(i); if (!siteName.equals("") && !siteName.equals(rls.getName())) { Debug.warning("This lookup should be done using a specific site, skipping"); continue; } prefix = rls.getPrefix(); ac_length = rls.getAreaCodeLength(); if (!nummer.startsWith(prefix)) nummer = prefix + nummer; urlstr = rls.getURL(); if (urlstr.contains("$AREACODE")) { urlstr = urlstr.replaceAll("\\$AREACODE", nummer.substring(prefix.length(), ac_length + prefix.length())); urlstr = urlstr.replaceAll("\\$NUMBER", nummer.substring(prefix.length() + ac_length)); } else if (urlstr.contains("$PFXAREACODE")) { urlstr = urlstr.replaceAll("\\$PFXAREACODE", nummer.substring(0, prefix.length() + ac_length)); urlstr = urlstr.replaceAll("\\$NUMBER", nummer.substring(prefix.length() + ac_length)); } else urlstr = urlstr.replaceAll("\\$NUMBER", nummer); Debug.info("Reverse lookup using: " + urlstr); url = null; data = new String[dataLength]; try { url = new URL(urlstr); if (url != null) { try { con = url.openConnection(); con.setConnectTimeout(5000); con.setReadTimeout(15000); con.addRequestProperty("User-Agent", userAgent); con.connect(); header = ""; charSet = ""; for (int j = 0; ; j++) { String headerName = con.getHeaderFieldKey(j); String headerValue = con.getHeaderField(j); if (headerName == null && headerValue == null) { break; } if ("content-type".equalsIgnoreCase(headerName)) { String[] split = headerValue.split(";", 2); for (int k = 0; k < split.length; k++) { if (split[k].trim().toLowerCase().startsWith("charset=")) { String[] charsetSplit = split[k].split("="); charSet = charsetSplit[1].trim(); } } } header += headerName + ": " + headerValue + " | "; } Debug.debug("Header of " + rls.getName() + ":" + header); Debug.debug("CHARSET : " + charSet); BufferedReader d; if (charSet.equals("")) { d = new BufferedReader(new InputStreamReader(con.getInputStream(), "ISO-8859-1")); } else { d = new BufferedReader(new InputStreamReader(con.getInputStream(), charSet)); } int lines = 0; while (null != ((str = d.readLine()))) { data[lines] = str; yield(); if (lines >= dataLength) { System.err.println("Result > " + dataLength + " Lines"); break; } lines++; } d.close(); Debug.info("Begin processing response from " + rls.getName()); for (int j = 0; j < rls.size(); j++) { yield(); firstname = ""; lastname = ""; company = ""; street = ""; zipcode = ""; city = ""; Person p = null; patterns = rls.getEntry(j); Pattern namePattern = null; Pattern streetPattern = null; Pattern cityPattern = null; Pattern zipcodePattern = null; Pattern firstnamePattern = null; Pattern lastnamePattern = null; Matcher nameMatcher = null; Matcher streetMatcher = null; Matcher cityMatcher = null; Matcher zipcodeMatcher = null; Matcher firstnameMatcher = null; Matcher lastnameMatcher = null; if (!patterns[ReverseLookupSite.NAME].equals("") && (patterns[ReverseLookupSite.FIRSTNAME].equals("") && patterns[ReverseLookupSite.LASTNAME].equals(""))) { namePattern = Pattern.compile(patterns[ReverseLookupSite.NAME]); } if (!patterns[ReverseLookupSite.STREET].equals("")) { streetPattern = Pattern.compile(patterns[ReverseLookupSite.STREET]); } if (!patterns[ReverseLookupSite.CITY].equals("")) { cityPattern = Pattern.compile(patterns[ReverseLookupSite.CITY]); } if (!patterns[ReverseLookupSite.ZIPCODE].equals("")) { zipcodePattern = Pattern.compile(patterns[ReverseLookupSite.ZIPCODE]); } if (!patterns[ReverseLookupSite.FIRSTNAME].equals("")) { firstnamePattern = Pattern.compile(patterns[ReverseLookupSite.FIRSTNAME]); } if (!patterns[ReverseLookupSite.LASTNAME].equals("")) { lastnamePattern = Pattern.compile(patterns[ReverseLookupSite.LASTNAME]); } for (int line = 0; line < dataLength; line++) { if (data[line] != null) { int spaceAlternative = 160; data[line] = data[line].replaceAll(new Character((char) spaceAlternative).toString(), " "); if (lastnamePattern != null) { lastnameMatcher = lastnamePattern.matcher(data[line]); if (lastnameMatcher.find()) { str = ""; for (int k = 1; k <= lastnameMatcher.groupCount(); k++) { if (lastnameMatcher.group(k) != null) str = str + lastnameMatcher.group(k).trim() + " "; } lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(str)); lastname = lastname.trim(); lastname = lastname.replaceAll(",", ""); lastname = lastname.replaceAll("%20", " "); lastname = JFritzUtils.replaceSpecialCharsUTF(lastname); lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(lastname)); lastname = JFritzUtils.removeDuplicateWhitespace(lastname); if ("lastname".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setLastName(lastname); } } } yield(); if (firstnamePattern != null) { firstnameMatcher = firstnamePattern.matcher(data[line]); if (firstnameMatcher.find()) { str = ""; for (int k = 1; k <= firstnameMatcher.groupCount(); k++) { if (firstnameMatcher.group(k) != null) str = str + firstnameMatcher.group(k).trim() + " "; } firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(str)); firstname = firstname.trim(); firstname = firstname.replaceAll(",", ""); firstname = firstname.replaceAll("%20", " "); firstname = JFritzUtils.replaceSpecialCharsUTF(firstname); firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(firstname)); firstname = JFritzUtils.removeDuplicateWhitespace(firstname); if ("firstname".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setFirstName(firstname); } } } yield(); if (namePattern != null) { nameMatcher = namePattern.matcher(data[line]); if (nameMatcher.find()) { str = ""; for (int k = 1; k <= nameMatcher.groupCount(); k++) { if (nameMatcher.group(k) != null) str = str + nameMatcher.group(k).trim() + " "; } String[] split; split = str.split(" ", 2); lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(split[0])); lastname = lastname.trim(); lastname = lastname.replaceAll(",", ""); lastname = lastname.replaceAll("%20", " "); lastname = JFritzUtils.replaceSpecialCharsUTF(lastname); lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(lastname)); lastname = JFritzUtils.removeDuplicateWhitespace(lastname); if (split[1].length() > 0) { firstname = HTMLUtil.stripEntities(split[1]); if ((firstname.indexOf(" ") > -1) && (firstname.indexOf(" u.") == -1)) { company = JFritzUtils.removeLeadingSpaces(firstname.substring(firstname.indexOf(" ")).trim()); firstname = JFritzUtils.removeLeadingSpaces(firstname.substring(0, firstname.indexOf(" ")).trim()); } else { firstname = JFritzUtils.removeLeadingSpaces(firstname.replaceAll(" u. ", " und ")); } } firstname = firstname.replaceAll("%20", " "); firstname = JFritzUtils.replaceSpecialCharsUTF(firstname); firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(firstname)); firstname = JFritzUtils.removeDuplicateWhitespace(firstname); firstname = firstname.trim(); company = company.replaceAll("%20", " "); company = JFritzUtils.replaceSpecialCharsUTF(company); company = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(company)); company = JFritzUtils.removeDuplicateWhitespace(company); company = company.trim(); if ("name".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); if (company.length() > 0) { p.addNumber(number.getIntNumber(), "business"); } else { p.addNumber(number.getIntNumber(), "home"); } foundPersons.add(p); } if (p != null) { p.setFirstName(firstname); p.setLastName(lastname); p.setCompany(company); } } } yield(); if (streetPattern != null) { streetMatcher = streetPattern.matcher(data[line]); if (streetMatcher.find()) { str = ""; for (int k = 1; k <= streetMatcher.groupCount(); k++) { if (streetMatcher.group(k) != null) str = str + streetMatcher.group(k).trim() + " "; } street = str.replaceAll("%20", " "); street = JFritzUtils.replaceSpecialCharsUTF(street); street = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(street)); street = JFritzUtils.removeDuplicateWhitespace(street); street = street.trim(); if ("street".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setStreet(street); } } } yield(); if (cityPattern != null) { cityMatcher = cityPattern.matcher(data[line]); if (cityMatcher.find()) { str = ""; for (int k = 1; k <= cityMatcher.groupCount(); k++) { if (cityMatcher.group(k) != null) str = str + cityMatcher.group(k).trim() + " "; } city = str.replaceAll("%20", " "); city = JFritzUtils.replaceSpecialCharsUTF(city); city = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(city)); city = JFritzUtils.removeDuplicateWhitespace(city); city = city.trim(); if ("city".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setCity(city); } } } yield(); if (zipcodePattern != null) { zipcodeMatcher = zipcodePattern.matcher(data[line]); if (zipcodeMatcher.find()) { str = ""; for (int k = 1; k <= zipcodeMatcher.groupCount(); k++) { if (zipcodeMatcher.group(k) != null) str = str + zipcodeMatcher.group(k).trim() + " "; } zipcode = str.replaceAll("%20", " "); zipcode = JFritzUtils.replaceSpecialCharsUTF(zipcode); zipcode = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(zipcode)); zipcode = JFritzUtils.removeDuplicateWhitespace(zipcode); zipcode = zipcode.trim(); if ("zipcode".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setPostalCode(zipcode); } } } } } if (!firstname.equals("") || !lastname.equals("") || !company.equals("")) break; } yield(); if (!firstname.equals("") || !lastname.equals("") || !company.equals("")) { if (city.equals("")) { if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(nummer); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(nummer); } return foundPersons.get(0); } } catch (IOException e1) { Debug.error("Error while retrieving " + urlstr); } } } catch (MalformedURLException e) { Debug.error("URL invalid: " + urlstr); } } yield(); Debug.warning("No match for " + nummer + " found"); if (city.equals("")) { if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(nummer); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(nummer); } Person p = new Person("", "", "", "", "", city, "", ""); p.addNumber(number.getAreaNumber(), "home"); return p; } else { Debug.warning("No reverse lookup sites for: " + number.getCountryCode()); Person p = new Person(); p.addNumber(number.getAreaNumber(), "home"); if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(number.getIntNumber()); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(number.getIntNumber()); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(number.getIntNumber()); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(number.getIntNumber()); p.setCity(city); return p; } return new Person("not found", "Person"); } | 16,052 |
1 | private void CopyTo(File dest) throws IOException { FileReader in = null; FileWriter out = null; int c; try { in = new FileReader(image); out = new FileWriter(dest); while ((c = in.read()) != -1) out.write(c); } finally { if (in != null) try { in.close(); } catch (Exception e) { } if (out != null) try { out.close(); } catch (Exception e) { } } } | public static boolean copy(String source, String dest) { int bytes; byte array[] = new byte[BUFFER_LEN]; try { InputStream is = new FileInputStream(source); OutputStream os = new FileOutputStream(dest); while ((bytes = is.read(array, 0, BUFFER_LEN)) > 0) os.write(array, 0, bytes); is.close(); os.close(); return true; } catch (IOException e) { return false; } } | 16,053 |
1 | private boolean exportPKC(String keystoreLocation, String pw) { boolean created = false; KeyStore ks = null; try { ks = KeyStore.getInstance(KeyStore.getDefaultType()); ks.load(new BufferedInputStream(new FileInputStream(keystoreLocation)), pw.toCharArray()); } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading keystore file when exporting PKC: " + e.getMessage()); } return false; } Certificate cert = null; try { cert = ks.getCertificate("saws"); } catch (KeyStoreException e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading certificate from keystore file when exporting PKC: " + e.getMessage()); } return false; } try { StringBuffer sb = new StringBuffer("-----BEGIN CERTIFICATE-----\n"); sb.append(new String(Base64.encode(cert.getEncoded()))); sb.append("\n-----END CERTIFICATE-----\n"); OutputStreamWriter wr = new OutputStreamWriter(new FileOutputStream("sawsSigningPKC.crt")); wr.write(new String(sb)); wr.flush(); wr.close(); created = true; } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error exporting PKC file: " + e.getMessage()); } return false; } return created; } | public static void main(String[] args) { File file = null; try { file = File.createTempFile("TestFileChannel", ".dat"); final ByteBuffer buffer = ByteBuffer.allocateDirect(4); final ByteChannel output = new FileOutputStream(file).getChannel(); buffer.putInt(MAGIC_INT); buffer.flip(); output.write(buffer); output.close(); final ByteChannel input = new FileInputStream(file).getChannel(); buffer.clear(); while (buffer.hasRemaining()) { input.read(buffer); } input.close(); buffer.flip(); final int file_int = buffer.getInt(); if (file_int != MAGIC_INT) { System.out.println("TestFileChannel FAILURE"); System.out.println("Wrote " + Integer.toHexString(MAGIC_INT) + " but read " + Integer.toHexString(file_int)); } else { System.out.println("TestFileChannel SUCCESS"); } } catch (Exception e) { System.out.println("TestFileChannel FAILURE"); e.printStackTrace(System.out); } finally { if (null != file) { file.delete(); } } } | 16,054 |
1 | public static String scramble(String text) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(text.getBytes("UTF-8")); StringBuffer sb = new StringBuffer(); for (byte b : md.digest()) sb.append(Integer.toString(b & 0xFF, 16)); return sb.toString(); } catch (UnsupportedEncodingException e) { return null; } catch (NoSuchAlgorithmException e) { return null; } } | public String control(final String allOptions) throws SQLException { connect(); final Statement stmt = connection.createStatement(); final ResultSet rst1 = stmt.executeQuery("SELECT versionId FROM versions WHERE version='" + Concrete.version() + "'"); final long versionId; if (rst1.next()) { versionId = rst1.getInt(1); } else { disconnect(); return ""; } rst1.close(); final MessageDigest msgDigest; try { msgDigest = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e1) { logger.throwing(SQLExecutionController.class.getSimpleName(), "control", e1); disconnect(); return ""; } msgDigest.update(allOptions.getBytes()); final ResultSet rst2 = stmt.executeQuery("SELECT configId FROM configs WHERE md5='" + Concrete.md5(msgDigest.digest()) + "'"); final long configId; if (rst2.next()) { configId = rst2.getInt(1); } else { disconnect(); return ""; } rst2.close(); final ResultSet rst4 = stmt.executeQuery("SELECT problems.md5 FROM executions " + "LEFT JOIN problems ON executions.problemId = problems.problemId WHERE " + "configId=" + configId + " AND versionId=" + versionId); final StringBuilder stb = new StringBuilder(); while (rst4.next()) { stb.append(rst4.getString(1)).append('\n'); } rst4.close(); stmt.close(); return stb.toString(); } | 16,055 |
1 | public static void copyFile6(File srcFile, File destFile) throws FileNotFoundException { Scanner s = new Scanner(srcFile); PrintWriter pw = new PrintWriter(destFile); while(s.hasNextLine()) { pw.println(s.nextLine()); } pw.close(); s.close(); } | void shutdown(final boolean unexpected) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } log.error("check if we need the controler listener infrastructure"); if (this.dumpDataAtEnd) { new PopulationWriter(this.population, this.network).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); } | 16,056 |
0 | public static int[] sortAscending(int input[]) { int[] order = new int[input.length]; for (int i = 0; i < order.length; i++) order[i] = i; for (int i = input.length; --i >= 0; ) { for (int j = 0; j < i; j++) { if (input[j] > input[j + 1]) { int mem = input[j]; input[j] = input[j + 1]; input[j + 1] = mem; int id = order[j]; order[j] = order[j + 1]; order[j + 1] = id; } } } return order; } | private void initBanner() { for (int k = 0; k < 3; k++) { if (bannerImg == null) { int i = getRandomId(); imageURL = NbBundle.getMessage(BottomContent.class, "URL_BannerImageLink", Integer.toString(i)); bannerURL = NbBundle.getMessage(BottomContent.class, "URL_BannerLink", Integer.toString(i)); HttpContext context = new BasicHttpContext(); context.setAttribute(ClientContext.COOKIE_STORE, cookieStore); HttpGet method = new HttpGet(imageURL); try { HttpResponse response = ProxyManager.httpClient.execute(method, context); HttpEntity entity = response.getEntity(); if (entity != null) { bannerImg = new ImageIcon(ImageIO.read(entity.getContent())); EntityUtils.consume(entity); } } catch (IOException ex) { bannerImg = null; } finally { method.abort(); } } else { break; } } if (bannerImg == null) { NotifyUtil.error("Banner Error", "Application could not get banner image. Please check your internet connection.", false); } } | 16,057 |
0 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private static String md5(String digest, String data) throws IOException { MessageDigest messagedigest; try { messagedigest = MessageDigest.getInstance(digest); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } messagedigest.update(data.getBytes("ISO-8859-1")); byte[] bytes = messagedigest.digest(); StringBuilder stringbuffer = new StringBuilder(bytes.length * 2); for (int j = 0; j < bytes.length; j++) { int k = bytes[j] >>> 4 & 0x0f; stringbuffer.append(hexChars[k]); k = bytes[j] & 0x0f; stringbuffer.append(hexChars[k]); } return stringbuffer.toString(); } | 16,058 |
0 | public void loginMD5() throws Exception { GetMethod get = new GetMethod("http://login.yahoo.com/config/login?.src=www&.done=http://www.yahoo.com"); get.setRequestHeader("user-agent", "Mozilla/5.0 (Macintosh; U; PPC MacOS X; en-us) AppleWebKit/124 (KHTML, like Gecko) Safari/125.1"); client.executeMethod(get); parseResponse(get.getResponseBodyAsStream()); MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(password.getBytes("US-ASCII")); String hash1 = new String(digest.digest(), "US-ASCII"); String hash2 = hash1 + challenge; digest.update(hash2.getBytes("US-ASCII")); String hash = new String(digest.digest(), "US-ASCII"); NameValuePair[] pairs = { new NameValuePair("login", login), new NameValuePair("password", hash), new NameValuePair(".save", "1"), new NameValuePair(".tries", "1"), new NameValuePair(".src", "www"), new NameValuePair(".md5", "1"), new NameValuePair(".hash", "1"), new NameValuePair(".js", "1"), new NameValuePair(".last", ""), new NameValuePair(".promo", ""), new NameValuePair(".intl", "us"), new NameValuePair(".bypass", ""), new NameValuePair(".u", u), new NameValuePair(".v", "0"), new NameValuePair(".challenge", challenge), new NameValuePair(".yplus", ""), new NameValuePair(".emailCode", ""), new NameValuePair("pkg", ""), new NameValuePair("stepid", ""), new NameValuePair(".ev", ""), new NameValuePair("hasMsgr", "0"), new NameValuePair(".chkP", "Y"), new NameValuePair(".done", "http://www.yahoo.com"), new NameValuePair(".persistent", "y") }; get = new GetMethod("http://login.yahoo.com/config/login"); get.setRequestHeader("user-agent", "Mozilla/5.0 (Macintosh; U; PPC MacOS X; en-us) AppleWebKit/124 (KHTML, like Gecko) Safari/125.1"); get.addRequestHeader("Accept", "*/*"); get.addRequestHeader("Accept-Language", "en-us, ja;q=0.21, de-de;q=0.86, de;q=0.79, fr-fr;q=0.71, fr;q=0.64, nl-nl;q=0.57, nl;q=0.50, it-it;q=0.43, it;q=0.36, ja-jp;q=0.29, en;q=0.93, es-es;q=0.14, es;q=0.07"); get.setQueryString(pairs); client.executeMethod(get); get.getResponseBodyAsString(); } | private URLConnection openGetConnection(StringBuffer sb) throws IOException, IOException, MalformedURLException { URL url = new URL(m_gatewayAddress + "?" + sb.toString()); URLConnection connection = url.openConnection(); connection.setUseCaches(false); return connection; } | 16,059 |
1 | public static String crypt(String senha) { String md5 = null; MessageDigest md; try { md = MessageDigest.getInstance(CRYPT_ALGORITHM); md.update(senha.getBytes()); Hex hex = new Hex(); md5 = new String(hex.encode(md.digest())); } catch (NoSuchAlgorithmException e) { logger.error(ResourceUtil.getLOGMessage("_nls.mensagem.geral.log.crypt.no.such.algorithm", CRYPT_ALGORITHM)); } return md5; } | public void createVendorSignature() { byte b; try { _vendorMessageDigest = MessageDigest.getInstance("MD5"); _vendorSig = Signature.getInstance("MD5/RSA/PKCS#1"); _vendorSig.initSign((PrivateKey) _vendorPrivateKey); _vendorMessageDigest.update(getBankString().getBytes()); _vendorMessageDigestBytes = _vendorMessageDigest.digest(); _vendorSig.update(_vendorMessageDigestBytes); _vendorSignatureBytes = _vendorSig.sign(); } catch (Exception e) { } ; } | 16,060 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static List<String> unTar(File tarFile, File directory) throws IOException { List<String> result = new ArrayList<String>(); InputStream inputStream = new FileInputStream(tarFile); TarArchiveInputStream in = new TarArchiveInputStream(inputStream); TarArchiveEntry entry = in.getNextTarEntry(); while (entry != null) { OutputStream out = new FileOutputStream(new File(directory, entry.getName())); IOUtils.copy(in, out); out.close(); result.add(entry.getName()); entry = in.getNextTarEntry(); } in.close(); return result; } | 16,061 |
1 | public static void copyFile(File sourceFile, File targetFile) throws IOException { if (sourceFile == null || targetFile == null) { throw new NullPointerException("Source file and target file must not be null"); } File directory = targetFile.getParentFile(); if (!directory.exists() && !directory.mkdirs()) { throw new IOException("Could not create directory '" + directory + "'"); } InputStream inputStream = null; OutputStream outputStream = null; try { inputStream = new BufferedInputStream(new FileInputStream(sourceFile)); outputStream = new BufferedOutputStream(new FileOutputStream(targetFile)); try { byte[] buffer = new byte[32768]; for (int readBytes = inputStream.read(buffer); readBytes > 0; readBytes = inputStream.read(buffer)) { outputStream.write(buffer, 0, readBytes); } } catch (IOException ex) { targetFile.delete(); throw ex; } } finally { if (inputStream != null) { try { inputStream.close(); } catch (IOException ex) { } } if (outputStream != null) { try { outputStream.close(); } catch (IOException ex) { } } } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 16,062 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | public static void nioJoinFiles(FileLib.FileValidator validator, File target, File[] sources) { boolean big_files = false; for (int i = 0; i < sources.length; i++) { if (sources[i].length() > Integer.MAX_VALUE) { big_files = true; break; } } if (big_files) { joinFiles(validator, target, sources); } else { System.out.println(i18n.getString("jdk14_comment")); FileOutputStream fos = null; try { fos = new FileOutputStream(target); FileChannel fco = fos.getChannel(); FileInputStream fis = null; for (int i = 0; i < sources.length; i++) { fis = new FileInputStream(sources[i]); FileChannel fci = fis.getChannel(); java.nio.MappedByteBuffer map; try { map = fci.map(FileChannel.MapMode.READ_ONLY, 0, (int) sources[i].length()); fco.write(map); fci.close(); } catch (IOException ioe) { JOptionPane.showMessageDialog(null, ioe, i18n.getString("Failure"), JOptionPane.ERROR_MESSAGE); try { fis.close(); fos.close(); } catch (IOException e) { } } finally { fis.close(); } } fco.close(); } catch (Exception e) { JOptionPane.showMessageDialog(null, e, i18n.getString("Failure"), JOptionPane.ERROR_MESSAGE); } finally { try { if (fos != null) fos.close(); } catch (IOException e) { } } } } | 16,063 |
1 | public String hash(String plainTextPassword) { try { MessageDigest digest = MessageDigest.getInstance(digestAlgorithm); digest.update(plainTextPassword.getBytes(charset)); byte[] rawHash = digest.digest(); return new String(Hex.encodeHex(rawHash)); } catch (Exception ex) { throw new RuntimeException(ex); } } | public static String descripta(String senha) throws GCIException { LOGGER.debug(INICIANDO_METODO + "descripta(String)"); try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(senha.getBytes()); BASE64Encoder encoder = new BASE64Encoder(); return encoder.encode(digest.digest()); } catch (NoSuchAlgorithmException e) { LOGGER.fatal(e.getMessage(), e); throw new GCIException(e); } finally { LOGGER.debug(FINALIZANDO_METODO + "descripta(String)"); } } | 16,064 |
0 | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public static String makeMD5(String pin) { try { MessageDigest digest = java.security.MessageDigest.getInstance("MD5"); digest.update(pin.getBytes()); byte[] hash = digest.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < hash.length; i++) { hexString.append(Integer.toHexString(0xFF & hash[i])); } return hexString.toString(); } catch (Exception e) { return null; } } | 16,065 |
0 | public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); if (to_file.exists()) { if (!to_file.canWrite()) abort("FileCopy: destination file is unwriteable: " + to_name); System.out.print("Overwrite existing file " + to_name + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) abort("FileCopy: existing file was not overwritten."); } else { String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | 16,066 |
0 | public void actionPerformed(ActionEvent e) { if (e.getActionCommand().equals("LOAD")) { JFileChooser chooser = new JFileChooser(); chooser.setFileFilter(new JPEGFilter()); chooser.setMultiSelectionEnabled(false); if (chooser.showOpenDialog(getTopLevelAncestor()) == JFileChooser.APPROVE_OPTION) { try { File file = chooser.getSelectedFile(); BufferedInputStream is = new BufferedInputStream(new FileInputStream(file)); ByteArrayOutputStream bos = new ByteArrayOutputStream((int) file.length()); int read = is.read(); while (read != -1) { bos.write(read); read = is.read(); } is.close(); _changed = true; setImage(bos.toByteArray()); } catch (Exception e1) { _log.error("actionPerformed(ActionEvent)", e1); } } } else if (e.getActionCommand().equals("SAVE")) { JFileChooser chooser = new JFileChooser(); chooser.setFileFilter(new JPEGFilter()); chooser.setMultiSelectionEnabled(false); if (_data != null && chooser.showSaveDialog(getTopLevelAncestor()) == JFileChooser.APPROVE_OPTION) { try { File file = chooser.getSelectedFile(); BufferedOutputStream os = new BufferedOutputStream(new FileOutputStream(file)); os.write(_data); os.flush(); os.close(); } catch (Exception e1) { _log.error("actionPerformed(ActionEvent)", e1); } } } else if (e.getActionCommand().equals("DELETE")) { if (_data != null) { int result = JOptionPane.showConfirmDialog(getTopLevelAncestor(), GuiStrings.getString("message.removeimg"), GuiStrings.getString("title.confirm"), JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE); if (result == JOptionPane.YES_OPTION) { removeImage(); _changed = true; } } } } | @Override public InputStream getInputStream() { String url = resourceURL_; try { return new URL(url).openStream(); } catch (Exception e) { } try { return new FileInputStream("/" + url); } catch (Exception e) { e.printStackTrace(); } return null; } | 16,067 |
0 | public static void redirect(String strRequest, PrintWriter sortie) throws Exception { String level = "info."; if (ConnectorServlet.debug) level = "debug."; Log log = LogFactory.getLog(level + "fr.brgm.exows.gml2gsml.GFI"); URL url2Request = new URL(strRequest); URLConnection conn = url2Request.openConnection(); DataInputStream buffin = new DataInputStream(new BufferedInputStream(conn.getInputStream())); String strLine = null; while ((strLine = buffin.readLine()) != null) { sortie.println(strLine); } buffin.close(); } | public static final String encryptSHA(String decrypted) { try { MessageDigest sha = MessageDigest.getInstance("SHA-1"); sha.reset(); sha.update(decrypted.getBytes()); byte hash[] = sha.digest(); sha.reset(); return hashToHex(hash); } catch (NoSuchAlgorithmException _ex) { return null; } } | 16,068 |
1 | public static void copyFile(File fileIn, File fileOut) throws IOException { FileChannel chIn = new FileInputStream(fileIn).getChannel(); FileChannel chOut = new FileOutputStream(fileOut).getChannel(); try { chIn.transferTo(0, chIn.size(), chOut); } catch (IOException e) { throw e; } finally { if (chIn != null) chIn.close(); if (chOut != null) chOut.close(); } } | public byte[] exportCommunityData(String communityId) throws RepositoryException, IOException { Community community; try { community = getCommunityById(communityId); } catch (CommunityNotFoundException e1) { throw new GroupwareRuntimeException("Community to export not found"); } String contentPath = JCRUtil.getNodeById(communityId, community.getWorkspace()).getPath(); try { File zipOutFilename = File.createTempFile("exported-community", ".zip.tmp"); TemporaryFilesHandler.register(null, zipOutFilename); ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipOutFilename)); File file = File.createTempFile("exported-community", null); TemporaryFilesHandler.register(null, file); FileOutputStream fos = new FileOutputStream(file); exportCommunitySystemView(community, contentPath, fos); fos.close(); File propertiesFile = File.createTempFile("exported-community-properties", null); TemporaryFilesHandler.register(null, propertiesFile); FileOutputStream fosProperties = new FileOutputStream(propertiesFile); fosProperties.write(("communityId=" + communityId).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("externalId=" + community.getExternalId()).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("title=" + I18NUtils.localize(community.getTitle())).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("communityType=" + community.getType()).getBytes()); fosProperties.write(";".getBytes()); fosProperties.write(("communityName=" + community.getName()).getBytes()); fosProperties.close(); FileInputStream finProperties = new FileInputStream(propertiesFile); byte[] bufferProperties = new byte[4096]; out.putNextEntry(new ZipEntry("properties")); int readProperties = 0; while ((readProperties = finProperties.read(bufferProperties)) > 0) { out.write(bufferProperties, 0, readProperties); } finProperties.close(); FileInputStream fin = new FileInputStream(file); byte[] buffer = new byte[4096]; out.putNextEntry(new ZipEntry("xmlData")); int read = 0; while ((read = fin.read(buffer)) > 0) { out.write(buffer, 0, read); } fin.close(); out.close(); ByteArrayOutputStream baos = new ByteArrayOutputStream(); FileInputStream fisZipped = new FileInputStream(zipOutFilename); byte[] bufferOut = new byte[4096]; int readOut = 0; while ((readOut = fisZipped.read(bufferOut)) > 0) { baos.write(bufferOut, 0, readOut); } return baos.toByteArray(); } catch (Exception e) { String errorMessage = "Error exporting backup data, for comunnity with id " + communityId; log.error(errorMessage, e); throw new CMSRuntimeException(errorMessage, e); } } | 16,069 |
1 | public static void main(String[] args) { String WTKdir = null; String sourceFile = null; String instrFile = null; String outFile = null; String jadFile = null; Manifest mnf; if (args.length == 0) { usage(); return; } int i = 0; while (i < args.length && args[i].startsWith("-")) { if (("-WTK".equals(args[i])) && (i < args.length - 1)) { i++; WTKdir = args[i]; } else if (("-source".equals(args[i])) && (i < args.length - 1)) { i++; sourceFile = args[i]; } else if (("-instr".equals(args[i])) && (i < args.length - 1)) { i++; instrFile = args[i]; } else if (("-o".equals(args[i])) && (i < args.length - 1)) { i++; outFile = args[i]; } else if (("-jad".equals(args[i])) && (i < args.length - 1)) { i++; jadFile = args[i]; } else { System.out.println("Error: Unrecognized option: " + args[i]); System.exit(0); } i++; } if (WTKdir == null || sourceFile == null || instrFile == null) { System.out.println("Error: Missing parameter!!!"); usage(); return; } if (outFile == null) outFile = sourceFile; FileInputStream fisJar; try { fisJar = new FileInputStream(sourceFile); } catch (FileNotFoundException e1) { System.out.println("Cannot find source jar file: " + sourceFile); e1.printStackTrace(); return; } FileOutputStream fosJar; File aux = null; try { aux = File.createTempFile("predef", "aux"); fosJar = new FileOutputStream(aux); } catch (IOException e1) { System.out.println("Cannot find temporary jar file: " + aux); e1.printStackTrace(); return; } JarFile instrJar = null; Enumeration en = null; File tempDir = null; try { instrJar = new JarFile(instrFile); en = instrJar.entries(); tempDir = File.createTempFile("jbtp", ""); tempDir.delete(); System.out.println("Create directory: " + tempDir.mkdirs()); tempDir.deleteOnExit(); } catch (IOException e) { System.out.println("Cannot open instrumented file: " + instrFile); e.printStackTrace(); return; } String[] wtklib = new java.io.File(WTKdir + File.separator + "lib").list(new OnlyJar()); String preverifyCmd = WTKdir + File.separator + "bin" + File.separator + "preverify -classpath " + WTKdir + File.separator + "lib" + File.separator + CLDC_JAR + File.pathSeparator + WTKdir + File.separator + "lib" + File.separator + MIDP_JAR + File.pathSeparator + WTKdir + File.separator + "lib" + File.separator + WMA_JAR + File.pathSeparator + instrFile; for (int k = 0; k < wtklib.length; k++) { preverifyCmd += File.pathSeparator + WTKdir + File.separator + "lib" + wtklib[k]; } preverifyCmd += " " + "-d " + tempDir.getAbsolutePath() + " "; while (en.hasMoreElements()) { JarEntry je = (JarEntry) en.nextElement(); String jeName = je.getName(); if (jeName.endsWith(".class")) jeName = jeName.substring(0, jeName.length() - 6); preverifyCmd += jeName + " "; } try { Process p = Runtime.getRuntime().exec(preverifyCmd); if (p.waitFor() != 0) { BufferedReader in = new BufferedReader(new InputStreamReader(p.getErrorStream())); System.out.println("Error calling the preverify command."); while (in.ready()) { System.out.print("" + in.readLine()); } System.out.println(); in.close(); return; } } catch (Exception e) { System.out.println("Cannot execute preverify command"); e.printStackTrace(); return; } File[] listOfFiles = computeFiles(tempDir); System.out.println("-------------------------------\n" + "Files to insert: "); String[] strFiles = new String[listOfFiles.length]; int l = tempDir.toString().length() + 1; for (int j = 0; j < listOfFiles.length; j++) { strFiles[j] = listOfFiles[j].toString().substring(l); strFiles[j] = strFiles[j].replace(File.separatorChar, '/'); System.out.println(strFiles[j]); } System.out.println("-------------------------------"); try { JarInputStream jis = new JarInputStream(fisJar); mnf = jis.getManifest(); JarOutputStream jos = new JarOutputStream(fosJar, mnf); nextJar: for (JarEntry je = jis.getNextJarEntry(); je != null; je = jis.getNextJarEntry()) { String s = je.getName(); for (int k = 0; k < strFiles.length; k++) { if (strFiles[k].equals(s)) continue nextJar; } jos.putNextEntry(je); byte[] b = new byte[512]; for (int k = jis.read(b, 0, 512); k >= 0; k = jis.read(b, 0, 512)) { jos.write(b, 0, k); } } jis.close(); for (int j = 0; j < strFiles.length; j++) { FileInputStream fis = new FileInputStream(listOfFiles[j]); JarEntry je = new JarEntry(strFiles[j]); jos.putNextEntry(je); byte[] b = new byte[512]; while (fis.available() > 0) { int k = fis.read(b, 0, 512); jos.write(b, 0, k); } fis.close(); } jos.close(); fisJar.close(); fosJar.close(); } catch (IOException e) { System.out.println("Cannot read/write jar file."); e.printStackTrace(); return; } try { FileOutputStream fos = new FileOutputStream(outFile); FileInputStream fis = new FileInputStream(aux); byte[] b = new byte[512]; while (fis.available() > 0) { int k = fis.read(b, 0, 512); fos.write(b, 0, k); } fis.close(); fos.close(); } catch (IOException e) { System.out.println("Cannot write output jar file: " + outFile); e.printStackTrace(); } Iterator it; Attributes atr; atr = mnf.getMainAttributes(); it = atr.keySet().iterator(); if (jadFile != null) { FileOutputStream fos; try { File outJarFile = new File(outFile); fos = new FileOutputStream(jadFile); PrintStream psjad = new PrintStream(fos); while (it.hasNext()) { Object ats = it.next(); psjad.println(ats + ": " + atr.get(ats)); } psjad.println("MIDlet-Jar-URL: " + outFile); psjad.println("MIDlet-Jar-Size: " + outJarFile.length()); fos.close(); } catch (IOException eio) { System.out.println("Cannot create jad file."); eio.printStackTrace(); } } } | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | 16,070 |
1 | public void remove(String oid) throws PersisterException { String key = getLock(oid); if (key == null) { throw new PersisterException("Object does not exist: OID = " + oid); } else if (!NULL.equals(key)) { throw new PersisterException("The object is currently locked: OID = " + oid + ", LOCK = " + key); } Connection conn = null; PreparedStatement ps = null; try { conn = _ds.getConnection(); conn.setAutoCommit(true); ps = conn.prepareStatement("delete from " + _table_name + " where " + _oid_col + " = ?"); ps.setString(1, oid); ps.executeUpdate(); } catch (Throwable th) { if (conn != null) { try { conn.rollback(); } catch (Throwable th2) { } } throw new PersisterException("Failed to delete object: OID = " + oid, th); } finally { if (ps != null) { try { ps.close(); } catch (Throwable th) { } } if (conn != null) { try { conn.close(); } catch (Throwable th) { } } } } | public void doUpdateByIP() throws Exception { if (!isValidate()) { throw new CesSystemException("User_session.doUpdateByIP(): Illegal data values for update"); } Connection con = null; PreparedStatement ps = null; String strQuery = "UPDATE " + Common.USER_SESSION_TABLE + " SET " + "session_id = ?, user_id = ?, begin_date = ? , " + " mac_no = ?, login_id= ? " + "WHERE ip_address = ?"; DBOperation dbo = factory.createDBOperation(POOL_NAME); try { con = dbo.getConnection(); con.setAutoCommit(false); ps = con.prepareStatement(strQuery); ps.setString(1, this.sessionID); ps.setInt(2, this.user.getUserID()); ps.setTimestamp(3, this.beginDate); ps.setString(4, this.macNO); ps.setString(5, this.loginID); ps.setString(6, this.ipAddress); int resultCount = ps.executeUpdate(); if (resultCount != 1) { con.rollback(); throw new CesSystemException("User_session.doUpdateByIP(): ERROR updating data in T_SYS_USER_SESSION!! " + "resultCount = " + resultCount); } con.commit(); } catch (SQLException se) { if (con != null) { con.rollback(); } throw new CesSystemException("User_session.doUpdateByIP(): SQLException while updating user_session; " + "session_id = " + this.sessionID + " :\n\t" + se); } finally { con.setAutoCommit(true); closePreparedStatement(ps); closeConnection(dbo); } } | 16,071 |
0 | public void GetFile(ClientConnector cc, Map<String, String> attributes) throws Exception { log.debug("Starting FTP FilePull"); String sourceNode = attributes.get("src_name"); String sourceUser = attributes.get("src_user"); String sourcePassword = attributes.get("src_password"); String sourceFile = attributes.get("src_file"); String messageID = attributes.get("messageID"); String sourceMD5 = attributes.get("src_md5"); String sourceFileType = attributes.get("src_file_type"); Integer sourcePort = 21; String sourcePortString = attributes.get("src_port"); if ((sourcePortString != null) && (sourcePortString.equals(""))) { try { sourcePort = Integer.parseInt(sourcePortString); } catch (Exception e) { sourcePort = 21; log.debug("Destination Port \"" + sourcePortString + "\" was not valid. Using Default (21)"); } } log.info("Starting FTP pull of \"" + sourceFile + "\" from \"" + sourceNode); if ((sourceUser == null) || (sourceUser.equals(""))) { List userDBVal = axt.db.GeneralDAO.getNodeValue(sourceNode, "ftpUser"); if (userDBVal.size() < 1) { sourceUser = DEFAULTUSER; } else { sourceUser = (String) userDBVal.get(0); } } if ((sourcePassword == null) || (sourcePassword.equals(""))) { List passwordDBVal = axt.db.GeneralDAO.getNodeValue(sourceNode, "ftpPassword"); if (passwordDBVal.size() < 1) { sourcePassword = DEFAULTPASSWORD; } else { sourcePassword = (String) passwordDBVal.get(0); } } String stageFile = null; int stageFileID; try { stageFileID = axt.db.GeneralDAO.getStageFile(messageID); stageFile = STAGINGDIR + "/" + stageFileID; } catch (Exception e) { throw new Exception("Failed to assign a staging file \"" + stageFile + "\" - ERROR: " + e); } FileOutputStream fos; try { fos = new FileOutputStream(stageFile); } catch (FileNotFoundException fileNFException) { throw new Exception("Failed to assign the staging file \"" + stageFile + "\" - ERROR: " + fileNFException); } FTPClient ftp = new FTPClient(); try { log.debug("Connecting"); ftp.connect(sourceNode, sourcePort); log.debug("Checking Status"); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); throw new Exception("Failed to connect to \"" + sourceNode + "\" as user \"" + sourceUser + "\" - ERROR: " + ftp.getReplyString()); } log.debug("Logging In"); if (!ftp.login(sourceUser, sourcePassword)) { ftp.disconnect(); throw new Exception("Failed to connect to \"" + sourceNode + "\" as user \"" + sourceUser + "\" - ERROR: Login Failed"); } } catch (SocketException socketException) { throw new Exception("Failed to connect to \"" + sourceNode + "\" as user \"" + sourceUser + "\" - ERROR: " + socketException); } catch (IOException ioe) { throw new Exception("Failed to connect to \"" + sourceNode + "\" as user \"" + sourceUser + "\" - ERROR: " + ioe); } log.debug("Performing Site Commands"); Iterator siteIterator = GeneralDAO.getNodeValue(sourceNode, "ftpSite").iterator(); while (siteIterator.hasNext()) { String siteCommand = null; try { siteCommand = (String) siteIterator.next(); ftp.site(siteCommand); } catch (IOException e) { throw new Exception("FTP \"site\" command \"" + siteCommand + "\" failed - ERROR: " + e); } } if (sourceFileType != null) { if (sourceFileType.equals("A")) { log.debug("Set File Type to ASCII"); ftp.setFileType(FTP.ASCII_FILE_TYPE); } else if (sourceFileType.equals("B")) { log.debug("Set File Type to BINARY"); ftp.setFileType(FTP.BINARY_FILE_TYPE); } else if (sourceFileType.equals("E")) { log.debug("Set File Type to EBCDIC"); ftp.setFileType(FTP.EBCDIC_FILE_TYPE); } } log.debug("Opening the File Stream"); InputStream in = null; try { in = ftp.retrieveFileStream(sourceFile); if (in == null) { throw new Exception("Failed get the file \"" + sourceFile + "\" from \"" + sourceNode + "\" - ERROR: " + ftp.getReplyString()); } } catch (IOException ioe2) { ftp.disconnect(); log.error("Failed get the file \"" + sourceFile + "\" from \"" + sourceNode + "\" - ERROR: " + ioe2); throw new Exception("Failed to retrieve file from \"" + sourceNode + "\" as user \"" + sourceUser + "\" - ERROR: " + ioe2); } log.debug("Starting the read"); DESCrypt encrypter = null; try { encrypter = new DESCrypt(); } catch (Exception cryptInitError) { log.error("Failed to initialize the encrypt process - ERROR: " + cryptInitError); } String receivedMD5 = null; try { Object[] returnValues = encrypter.encrypt(in, fos); receivedMD5 = (String) returnValues[0]; GeneralDAO.setStageFileSize(stageFileID, (Long) returnValues[1]); } catch (Exception cryptError) { log.error("Encrypt Error: " + cryptError); throw new Exception("Encrypt Error: " + cryptError); } log.debug("Logging Out"); try { ftp.logout(); fos.close(); } catch (Exception ioe3) { log.error("Failed close connection to \"" + sourceNode + "\" - ERROR: " + ioe3); } log.debug("Setting the File Digest"); GeneralDAO.setStageFileDigest(stageFileID, receivedMD5); if ((sourceMD5 != null) && (!sourceMD5.equals(""))) { log.debug("File DIGEST compare - Source: " + sourceMD5.toLowerCase() + " | Received: " + receivedMD5); if (!receivedMD5.equals(sourceMD5.toLowerCase())) { throw new Exception("MD5 validation on file failed."); } } return; } | private void scanURL(String packagePath, Collection<String> componentClassNames, URL url) throws IOException { URLConnection connection = url.openConnection(); JarFile jarFile; if (connection instanceof JarURLConnection) { jarFile = ((JarURLConnection) connection).getJarFile(); } else { jarFile = getAlternativeJarFile(url); } if (jarFile != null) { scanJarFile(packagePath, componentClassNames, jarFile); } else if (supportsDirStream(url)) { Stack<Queued> queue = new Stack<Queued>(); queue.push(new Queued(url, packagePath)); while (!queue.isEmpty()) { Queued queued = queue.pop(); scanDirStream(queued.packagePath, queued.packageURL, componentClassNames, queue); } } else { String packageName = packagePath.replace("/", "."); if (packageName.endsWith(".")) { packageName = packageName.substring(0, packageName.length() - 1); } scanDir(packageName, new File(url.getFile()), componentClassNames); } } | 16,072 |
1 | public File copyLocalFileAsTempFileInExternallyAccessableDir(String localFileRef) throws IOException { log.debug("copyLocalFileAsTempFileInExternallyAccessableDir"); File f = this.createTempFileInExternallyAccessableDir(); FileChannel srcChannel = new FileInputStream(localFileRef).getChannel(); FileChannel dstChannel = new FileOutputStream(f).getChannel(); log.debug("before transferring via FileChannel from src-inputStream: " + localFileRef + " to dest-outputStream: " + f.getAbsolutePath()); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); log.debug("copyLocalFileAsTempFileInExternallyAccessableDir returning: " + f.getAbsolutePath()); return f; } | private void unzipEntry(ZipFile zipfile, ZipEntry entry, File outputDir, BackUpInfoFileGroup fileGroup, LinkedList<String> restoreList) { LinkedList<BackUpInfoFile> fileList = fileGroup.getFileList(); if (entry.isDirectory()) { createDir(new File(outputDir, entry.getName())); return; } for (int i = 0; i < fileList.size(); i++) { if (fileList.get(i).getId().equals(entry.getName())) { for (int j = 0; j < restoreList.size(); j++) { if ((fileList.get(i).getName() + "." + fileList.get(i).getType()).equals(restoreList.get(j))) { counter += 1; File outputFile = new File(outputDir, fileList.get(i).getName() + "." + fileList.get(i).getType()); if (!outputFile.getParentFile().exists()) { createDir(outputFile.getParentFile()); } BufferedInputStream inputStream; BufferedOutputStream outputStream; try { inputStream = new BufferedInputStream(zipfile.getInputStream(entry)); outputStream = new BufferedOutputStream(new FileOutputStream(outputFile)); IOUtils.copy(inputStream, outputStream); outputStream.close(); inputStream.close(); } catch (IOException ex) { throw new BackupException(ex.getMessage()); } } } } } } | 16,073 |
1 | public Object process(Atom oAtm) throws IOException { File oFile; FileReader oFileRead; String sPathHTML; char cBuffer[]; Object oReplaced; final String sSep = System.getProperty("file.separator"); if (DebugFile.trace) { DebugFile.writeln("Begin FileDumper.process([Job:" + getStringNull(DB.gu_job, "") + ", Atom:" + String.valueOf(oAtm.getInt(DB.pg_atom)) + "])"); DebugFile.incIdent(); } if (bHasReplacements) { sPathHTML = getProperty("workareasput"); if (!sPathHTML.endsWith(sSep)) sPathHTML += sSep; sPathHTML += getParameter("gu_workarea") + sSep + "apps" + sSep + "Mailwire" + sSep + "html" + sSep + getParameter("gu_pageset") + sSep; sPathHTML += getParameter("nm_pageset").replace(' ', '_') + ".html"; if (DebugFile.trace) DebugFile.writeln("PathHTML = " + sPathHTML); oReplaced = oReplacer.replace(sPathHTML, oAtm.getItemMap()); bHasReplacements = (oReplacer.lastReplacements() > 0); } else { oReplaced = null; if (null != oFileStr) oReplaced = oFileStr.get(); if (null == oReplaced) { sPathHTML = getProperty("workareasput"); if (!sPathHTML.endsWith(sSep)) sPathHTML += sSep; sPathHTML += getParameter("gu_workarea") + sSep + "apps" + sSep + "Mailwire" + sSep + "html" + sSep + getParameter("gu_pageset") + sSep + getParameter("nm_pageset").replace(' ', '_') + ".html"; if (DebugFile.trace) DebugFile.writeln("PathHTML = " + sPathHTML); oFile = new File(sPathHTML); cBuffer = new char[new Long(oFile.length()).intValue()]; oFileRead = new FileReader(oFile); oFileRead.read(cBuffer); oFileRead.close(); if (DebugFile.trace) DebugFile.writeln(String.valueOf(cBuffer.length) + " characters readed"); oReplaced = new String(cBuffer); oFileStr = new SoftReference(oReplaced); } } String sPathJobDir = getProperty("storage"); if (!sPathJobDir.endsWith(sSep)) sPathJobDir += sSep; sPathJobDir += "jobs" + sSep + getParameter("gu_workarea") + sSep + getString(DB.gu_job) + sSep; FileWriter oFileWrite = new FileWriter(sPathJobDir + getString(DB.gu_job) + "_" + String.valueOf(oAtm.getInt(DB.pg_atom)) + ".html", true); oFileWrite.write((String) oReplaced); oFileWrite.close(); iPendingAtoms--; if (DebugFile.trace) { DebugFile.writeln("End FileDumper.process([Job:" + getStringNull(DB.gu_job, "") + ", Atom:" + String.valueOf(oAtm.getInt(DB.pg_atom)) + "])"); DebugFile.decIdent(); } return oReplaced; } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 16,074 |
0 | protected File getFile(NameCategory category) throws IOException { File home = new File(System.getProperty("user.dir")); String fileName = String.format("%s.txt", category); File file = new File(home, fileName); if (file.exists()) { return file; } else { URL url = DefaultNameGenerator.class.getResource("/sc/common/" + fileName); if (url == null) { throw new IllegalStateException(String.format("Cannot find resource at %s", fileName)); } else { InputStream in = url.openStream(); try { BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(file)); try { IOUtils.copy(in, out); } finally { out.close(); } } finally { in.close(); } return file; } } } | public String md5sum(String toCompute) throws Exception { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(toCompute.getBytes()); java.math.BigInteger hash = new java.math.BigInteger(1, md.digest()); return hash.toString(16); } | 16,075 |
0 | public void movePrior(String[] showOrder, String[] orgID, String targetShowOrder, String targetOrgID) throws Exception { Connection con = null; PreparedStatement ps = null; ResultSet result = null; int moveCount = showOrder.length; DBOperation dbo = factory.createDBOperation(POOL_NAME); String strQuery = "select show_order from " + Common.ORGANIZE_TABLE + " where show_order=" + showOrder[moveCount - 1] + " and organize_id= '" + orgID[moveCount - 1] + "'"; try { con = dbo.getConnection(); con.setAutoCommit(false); ps = con.prepareStatement(strQuery); result = ps.executeQuery(); int maxOrderNo = 0; if (result.next()) { maxOrderNo = result.getInt(1); } String[] sqls = new String[moveCount + 1]; sqls[0] = "update " + Common.ORGANIZE_TABLE + " set show_order=" + maxOrderNo + " where show_order=" + targetShowOrder + " and organize_id= '" + targetOrgID + "'"; for (int i = 0; i < showOrder.length; i++) { sqls[i + 1] = "update " + Common.ORGANIZE_TABLE + " set show_order=show_order-1" + " where show_order=" + showOrder[i] + " and organize_id= '" + orgID[i] + "'"; } for (int j = 0; j < sqls.length; j++) { ps = con.prepareStatement(sqls[j]); int resultCount = ps.executeUpdate(); if (resultCount != 1) { throw new CesSystemException("Organize.movePrior(): ERROR Inserting data " + "in T_SYS_ORGANIZE update !! resultCount = " + resultCount); } } con.commit(); } catch (SQLException se) { if (con != null) { con.rollback(); } throw new CesSystemException("Organize.movePrior(): SQLException while mov organize order " + " :\n\t" + se); } finally { con.setAutoCommit(true); close(dbo, ps, result); } } | public AddressType[] getAdressFromCRSCoordinate(Point3d crs_position) { AddressType[] result = null; String postRequest = "<?xml version=\"1.0\" encoding=\"UTF-8\"?> \n" + "<xls:XLS xmlns:xls=\"http://www.opengis.net/xls\" xmlns:sch=\"http://www.ascc.net/xml/schematron\" xmlns:gml=\"http://www.opengis.net/gml\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://www.opengis.net/xls \n" + " http://gdi3d.giub.uni-bonn.de/lus/schemas/LocationUtilityService.xsd\" version=\"1.1\"> \n" + " <xls:RequestHeader srsName=\"EPSG:" + Navigator.getEpsg_code() + "\"/> \n" + " <xls:Request methodName=\"ReverseGeocodeRequest\" requestID=\"123456789\" version=\"1.1\"> \n" + " <xls:ReverseGeocodeRequest> \n" + " <xls:Position> \n" + " <gml:Point srsName=\"" + Navigator.getEpsg_code() + "\"> \n" + " <gml:pos>" + crs_position.x + " " + crs_position.y + "</gml:pos> \n" + " </gml:Point> \n" + " </xls:Position> \n" + " <xls:ReverseGeocodePreference>StreetAddress</xls:ReverseGeocodePreference> \n" + " </xls:ReverseGeocodeRequest> \n" + " </xls:Request> \n" + "</xls:XLS> \n"; try { if (Navigator.isVerbose()) { System.out.println("contacting " + serviceEndPoint + ":\n" + postRequest); } URL u = new URL(serviceEndPoint); HttpURLConnection urlc = (HttpURLConnection) u.openConnection(); urlc.setReadTimeout(Navigator.TIME_OUT); urlc.setAllowUserInteraction(false); urlc.setRequestMethod("POST"); urlc.setRequestProperty("Content-Type", "application/xml"); urlc.setDoOutput(true); urlc.setDoInput(true); urlc.setUseCaches(false); PrintWriter xmlOut = null; xmlOut = new java.io.PrintWriter(urlc.getOutputStream()); xmlOut.write(postRequest); xmlOut.flush(); xmlOut.close(); InputStream is = urlc.getInputStream(); XLSDocument xlsResponse = XLSDocument.Factory.parse(is); is.close(); XLSType xlsTypeResponse = xlsResponse.getXLS(); AbstractBodyType abBodyResponse[] = xlsTypeResponse.getBodyArray(); ResponseType response = (ResponseType) abBodyResponse[0].changeType(ResponseType.type); AbstractResponseParametersType respParam = response.getResponseParameters(); if (respParam == null) { return null; } ReverseGeocodeResponseType drResp = (ReverseGeocodeResponseType) respParam.changeType(ReverseGeocodeResponseType.type); net.opengis.xls.ReverseGeocodedLocationType[] types = drResp.getReverseGeocodedLocationArray(); int num = types.length; if (num > 2) { return null; } result = new AddressType[num]; for (int i = 0; i < num; i++) { String addressDescription = "<b>"; net.opengis.xls.ReverseGeocodedLocationType type = types[i]; result[i] = type.getAddress(); } } catch (java.net.ConnectException ce) { JOptionPane.showMessageDialog(null, "no connection to reverse geocoder", "Connection Error", JOptionPane.ERROR_MESSAGE); } catch (Exception e) { e.printStackTrace(); } return result; } | 16,076 |
0 | public void writeTo(File f) throws IOException { if (state != STATE_OK) throw new IllegalStateException("Upload failed"); if (tempLocation == null) throw new IllegalStateException("File already saved"); if (f.isDirectory()) f = new File(f, filename); FileInputStream fis = new FileInputStream(tempLocation); FileOutputStream fos = new FileOutputStream(f); byte[] buf = new byte[BUFFER_SIZE]; try { int i = 0; while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i); } finally { deleteTemporaryFile(); fis.close(); fos.close(); } } | private HttpURLConnection makeGetRequest(String action, Object... parameters) throws IOException { StringBuffer request = new StringBuffer(remoteUrl); HTMLUtils.appendQuery(request, VERSION_PARAM, CLIENT_VERSION); HTMLUtils.appendQuery(request, ACTION_PARAM, action); for (int i = 0; i < parameters.length; i += 2) { HTMLUtils.appendQuery(request, String.valueOf(parameters[i]), String.valueOf(parameters[i + 1])); } String requestStr = request.toString(); URLConnection conn; if (requestStr.length() < MAX_URL_LENGTH) { URL url = new URL(requestStr); conn = url.openConnection(); } else { int queryPos = requestStr.indexOf('?'); byte[] query = requestStr.substring(queryPos + 1).getBytes(HTTPUtils.DEFAULT_CHARSET); URL url = new URL(requestStr.substring(0, queryPos)); conn = url.openConnection(); conn.setDoOutput(true); conn.setDoInput(true); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); conn.setRequestProperty("Content-Length", Integer.toString(query.length)); OutputStream outputStream = new BufferedOutputStream(conn.getOutputStream()); outputStream.write(query); outputStream.close(); } return (HttpURLConnection) conn; } | 16,077 |
1 | public AssessmentItemType getAssessmentItemType(String filename) { if (filename.contains(" ") && (System.getProperty("os.name").contains("Windows"))) { File source = new File(filename); String tempDir = System.getenv("TEMP"); File dest = new File(tempDir + "/temp.xml"); MQMain.logger.info("Importing from " + dest.getAbsolutePath()); FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } catch (Exception e) { e.printStackTrace(); } finally { if (in != null) try { in.close(); } catch (IOException e) { e.printStackTrace(); } if (out != null) try { out.close(); } catch (IOException e) { e.printStackTrace(); } filename = tempDir + "/temp.xml"; } } AssessmentItemType assessmentItemType = null; JAXBElement<?> jaxbe = null; try { XMLReader reader = XMLReaderFactory.createXMLReader(); ChangeNamespace convertfromv2p0tov2p1 = new ChangeNamespace(reader, "http://www.imsglobal.org/xsd/imsqti_v2p0", "http://www.imsglobal.org/xsd/imsqti_v2p1"); SAXSource source = null; try { FileInputStream fis = new FileInputStream(filename); InputStreamReader isr = null; try { isr = new InputStreamReader(fis, "UTF-8"); } catch (UnsupportedEncodingException e) { } InputSource is = new InputSource(isr); source = new SAXSource(convertfromv2p0tov2p1, is); } catch (FileNotFoundException e) { MQMain.logger.error("SAX/getAssessmentItemType/file not found"); } jaxbe = (JAXBElement<?>) MQModel.qtiCf.unmarshal(MQModel.imsqtiUnmarshaller, source); assessmentItemType = (AssessmentItemType) jaxbe.getValue(); } catch (JAXBException e) { MQMain.logger.error("JAX/getAssessmentItemType", e); } catch (SAXException e) { MQMain.logger.error("SAX/getAssessmentItemType", e); } return assessmentItemType; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 16,078 |
1 | public void writeConfigurationFile() throws IOException, ComponentException { SystemConfig config = parent.getParentSystem().getConfiguration(); File original = config.getLocation(); File backup = new File(original.getParentFile(), original.getName() + "." + System.currentTimeMillis()); FileInputStream in = new FileInputStream(original); FileOutputStream out = new FileOutputStream(backup); byte[] buffer = new byte[2048]; try { int bytesread = 0; while ((bytesread = in.read(buffer)) > 0) { out.write(buffer, 0, bytesread); } } catch (IOException e) { logger.warn("Failed to copy backup of configuration file"); throw e; } finally { in.close(); out.close(); } FileWriter replace = new FileWriter(original); replace.write(config.toFileFormat()); replace.close(); logger.info("Re-wrote configuration file " + original.getPath()); } | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | 16,079 |
1 | public boolean moveFileSafely(final File in, final File out) throws IOException { FileInputStream fis = null; FileOutputStream fos = null; FileChannel inChannel = null; FileChannel outChannel = null; final File tempOut = File.createTempFile("move", ".tmp"); try { fis = new FileInputStream(in); fos = new FileOutputStream(tempOut); inChannel = fis.getChannel(); outChannel = fos.getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); } finally { try { if (inChannel != null) inChannel.close(); } catch (IOException e) { LogUtils.debugf(JRobinConverter.class, "failed to close channel %s", inChannel); } try { if (outChannel != null) outChannel.close(); } catch (IOException e) { LogUtils.debugf(JRobinConverter.class, "failed to close channel %s", outChannel); } try { if (fis != null) fis.close(); } catch (IOException e) { LogUtils.debugf(JRobinConverter.class, "failed to close stream %s", fis); } try { if (fos != null) fos.close(); } catch (IOException e) { LogUtils.debugf(JRobinConverter.class, "failed to close stream %s", fos); } } out.delete(); if (!out.exists()) { tempOut.renameTo(out); return in.delete(); } return false; } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 16,080 |
0 | public void echo(HttpRequest request, HttpResponse response) throws IOException { InputStream in = request.getInputStream(); if ("gzip".equals(request.getField("Content-Encoding"))) { in = new GZIPInputStream(in); } IOUtils.copy(in, response.getOutputStream()); } | public static String SHA1(String text) { try { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { throw new RuntimeException(e); } } | 16,081 |
0 | public static String getPublicIP(Boolean proxy) { String IP = null; if (!proxy) { try { URL url = new URL(XMLConfigParser.urlHost + "getPublicIp.php"); HttpURLConnection Conn = (HttpURLConnection) url.openConnection(); InputStream InStream = Conn.getInputStream(); InputStreamReader Isr = new java.io.InputStreamReader(InStream); BufferedReader Br = new java.io.BufferedReader(Isr); IP = Br.readLine(); NetworkLog.logMsg(NetworkLog.LOG_INFO, Tools.class, "Your public IP address is " + IP); } catch (Exception e) { Log.error(Tools.class, e.getMessage()); } } else { XMLConfigParser.readProxyConfiguration(); System.getProperties().put("proxySet", "true"); System.getProperties().put("proxyHost", XMLConfigParser.proxyHost); System.getProperties().put("proxyPort", XMLConfigParser.proxyPort); URL url; try { url = new URL(XMLConfigParser.urlHost + "getPublicIp.php"); URLConnection urlConn = url.openConnection(); String password = XMLConfigParser.proxyUsername + ":" + XMLConfigParser.proxyPassword; String encoded = Base64.encodeBase64String(password.getBytes()); urlConn.setRequestProperty("Proxy-Authorization", encoded); InputStream InStream = urlConn.getInputStream(); InputStreamReader Isr = new java.io.InputStreamReader(InStream); BufferedReader Br = new java.io.BufferedReader(Isr); IP = Br.readLine(); NetworkLog.logMsg(NetworkLog.LOG_INFO, Tools.class, "Your public IP address is " + IP); } catch (MalformedURLException e) { Log.error(Tools.class, e.getMessage()); } catch (IOException e) { Log.error(Tools.class, e.getMessage()); } } return IP; } | public boolean saveVideoXMLOnWebserver() { String text = ""; boolean erg = false; try { URL url = new URL("http://localhost:8080/virtPresenterVerwalter/videofile.jsp?id=" + this.getId()); HttpURLConnection http = (HttpURLConnection) url.openConnection(); BufferedReader in = new BufferedReader(new InputStreamReader(http.getInputStream())); String zeile = ""; while ((zeile = in.readLine()) != null) { text += zeile + "\n"; } in.close(); http.disconnect(); erg = saveVideoXMLOnWebserver(text); System.err.println("Job " + this.getId() + " erfolgreich bearbeitet!"); } catch (MalformedURLException e) { System.err.println("Job " + this.getId() + ": Konnte video.xml nicht erstellen. Verbindung konnte nicht aufgebaut werden."); return false; } catch (IOException e) { System.err.println("Job " + this.getId() + ": Konnte video.xml nicht erstellen. Konnte Daten nicht lesen/schreiben."); return false; } return erg; } | 16,082 |
1 | public static Drawable fetchCachedDrawable(String url) throws MalformedURLException, IOException { Log.d(LOG_TAG, "Fetching cached : " + url); String cacheName = md5(url); checkAndCreateDirectoryIfNeeded(); File r = new File(CACHELOCATION + cacheName); if (!r.exists()) { InputStream is = (InputStream) fetch(url); FileOutputStream fos = new FileOutputStream(CACHELOCATION + cacheName); int nextChar; while ((nextChar = is.read()) != -1) fos.write((char) nextChar); fos.flush(); } FileInputStream fis = new FileInputStream(CACHELOCATION + cacheName); Drawable d = Drawable.createFromStream(fis, "src"); return d; } | public void guardarCantidad() { try { String can = String.valueOf(cantidadArchivos); File archivo = new File("cantidadArchivos.txt"); FileWriter fw = new FileWriter(archivo); BufferedWriter bw = new BufferedWriter(fw); PrintWriter salida = new PrintWriter(bw); salida.print(can); salida.close(); BufferedInputStream origin = null; FileOutputStream dest = new FileOutputStream("cantidadArchivos.zip"); ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(dest)); byte data[] = new byte[buffer]; File f = new File("cantidadArchivos.txt"); FileInputStream fi = new FileInputStream(f); origin = new BufferedInputStream(fi, buffer); ZipEntry entry = new ZipEntry("cantidadArchivos.txt"); out.putNextEntry(entry); int count; while ((count = origin.read(data, 0, buffer)) != -1) out.write(data, 0, count); out.close(); } catch (Exception e) { JOptionPane.showMessageDialog(null, "Error en: " + e.toString(), "Error", JOptionPane.ERROR_MESSAGE); } } | 16,083 |
1 | public static byte[] computeMD5(String s) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.reset(); md.update(s.getBytes()); return md.digest(); } catch (NoSuchAlgorithmException ex) { throw new RuntimeException(ex); } } | public RespID(PublicKey key) throws OCSPException { try { MessageDigest digest = MessageDigest.getInstance("SHA1"); ASN1InputStream aIn = new ASN1InputStream(key.getEncoded()); SubjectPublicKeyInfo info = SubjectPublicKeyInfo.getInstance(aIn.readObject()); digest.update(info.getPublicKeyData().getBytes()); ASN1OctetString keyHash = new DEROctetString(digest.digest()); this.id = new ResponderID(keyHash); } catch (Exception e) { throw new OCSPException("problem creating ID: " + e, e); } } | 16,084 |
0 | private void sortWhats(String[] labels, int[] whats, String simplifyString) { int n = whats.length; boolean swapped; do { swapped = false; for (int i = 0; i < n - 1; i++) { int i0_pos = simplifyString.indexOf(labels[whats[i]]); int i1_pos = simplifyString.indexOf(labels[whats[i + 1]]); if (i0_pos > i1_pos) { int temp = whats[i]; whats[i] = whats[i + 1]; whats[i + 1] = temp; swapped = true; } } } while (swapped); } | private boolean goToForum() { URL url = null; URLConnection urlConn = null; int code = 0; boolean gotNumReplies = false; boolean gotMsgNum = false; try { url = new URL("http://" + m_host + "/forums/index.php?topic=" + m_gameId + ".new"); } catch (MalformedURLException e) { e.printStackTrace(); return false; } try { urlConn = url.openConnection(); ((HttpURLConnection) urlConn).setRequestMethod("GET"); ((HttpURLConnection) urlConn).setInstanceFollowRedirects(false); urlConn.setDoOutput(false); urlConn.setDoInput(true); urlConn.setRequestProperty("Host", m_host); urlConn.setRequestProperty("Accept", "*/*"); urlConn.setRequestProperty("Connection", "Keep-Alive"); urlConn.setRequestProperty("Cache-Control", "no-cache"); if (m_referer != null) urlConn.setRequestProperty("Referer", m_referer); if (m_cookies != null) urlConn.setRequestProperty("Cookie", m_cookies); m_referer = url.toString(); readCookies(urlConn); code = ((HttpURLConnection) urlConn).getResponseCode(); if (code != 200) { String msg = ((HttpURLConnection) urlConn).getResponseMessage(); m_turnSummaryRef = String.valueOf(code) + ": " + msg; return false; } BufferedReader in = new BufferedReader(new InputStreamReader(urlConn.getInputStream())); String line = ""; Pattern p_numReplies = Pattern.compile(".*?;num_replies=(\\d+)\".*"); Pattern p_msgNum = Pattern.compile(".*?<a name=\"msg(\\d+)\"></a><a name=\"new\"></a>.*"); Pattern p_attachId = Pattern.compile(".*?action=dlattach;topic=" + m_gameId + ".0;attach=(\\d+)\">.*"); while ((line = in.readLine()) != null) { if (!gotNumReplies) { Matcher match_numReplies = p_numReplies.matcher(line); if (match_numReplies.matches()) { m_numReplies = match_numReplies.group(1); gotNumReplies = true; continue; } } if (!gotMsgNum) { Matcher match_msgNum = p_msgNum.matcher(line); if (match_msgNum.matches()) { m_msgNum = match_msgNum.group(1); gotMsgNum = true; continue; } } Matcher match_attachId = p_attachId.matcher(line); if (match_attachId.matches()) m_attachId = match_attachId.group(1); } in.close(); } catch (Exception e) { e.printStackTrace(); return false; } if (!gotNumReplies || !gotMsgNum) { m_turnSummaryRef = "Error: "; if (!gotNumReplies) m_turnSummaryRef += "No num_replies found in A&A.org forum topic. "; if (!gotMsgNum) m_turnSummaryRef += "No msgXXXXXX found in A&A.org forum topic. "; return false; } return true; } | 16,085 |
1 | public GetMyDocuments() { String urlString = dms_url + "/servlet/com.ufnasoft.dms.server.ServerGetMyDocuments"; String rvalue = ""; String filename = dms_home + FS + "temp" + FS + username + "mydocuments.xml"; try { String urldata = urlString + "?username=" + URLEncoder.encode(username, "UTF-8") + "&key=" + URLEncoder.encode(key, "UTF-8") + "&filename=" + URLEncoder.encode(username, "UTF-8") + "mydocuments.xml"; ; DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder parser = factory.newDocumentBuilder(); URL u = new URL(urldata); DataInputStream is = new DataInputStream(u.openStream()); FileOutputStream os = new FileOutputStream(filename); int iBufSize = is.available(); byte inBuf[] = new byte[20000 * 1024]; int iNumRead; while ((iNumRead = is.read(inBuf, 0, iBufSize)) > 0) os.write(inBuf, 0, iNumRead); os.close(); is.close(); File f = new File(filename); InputStream inputstream = new FileInputStream(f); Document document = parser.parse(inputstream); NodeList nodelist = document.getElementsByTagName("document"); int num = nodelist.getLength(); myDocsData = new String[num][4]; myDocsToolTip = new String[num]; myDocumentImageName = new String[num]; myDocIds = new int[num]; for (int i = 0; i < num; i++) { myDocsData[i][0] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "filename")); myDocsData[i][1] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "project")); myDocsData[i][2] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "deadline")); myDocsData[i][3] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "workingfolder")); myDocsToolTip[i] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "title")); myDocumentImageName[i] = new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "imagename")); myDocIds[i] = (new Integer(new String(DOMUtil.getSimpleElementText((Element) nodelist.item(i), "documentid")))).intValue(); } } catch (MalformedURLException ex) { System.out.println(ex); } catch (ParserConfigurationException ex) { System.out.println(ex); } catch (NullPointerException ex) { } catch (Exception ex) { System.out.println(ex); } } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 16,086 |
1 | private static String webService(String strUrl) { StringBuffer buffer = new StringBuffer(); try { URL url = new URL(strUrl); InputStream input = url.openStream(); String sCurrentLine = ""; InputStreamReader read = new InputStreamReader(input, "utf-8"); BufferedReader l_reader = new java.io.BufferedReader(read); while ((sCurrentLine = l_reader.readLine()) != null) { buffer.append(sCurrentLine); } return buffer.toString(); } catch (Exception e) { e.printStackTrace(); return null; } } | public static List<PluginInfo> getPluginInfos(String urlRepo) throws MalformedURLException, IOException { XStream xStream = new XStream(); xStream.alias("plugin", PluginInfo.class); xStream.alias("plugins", List.class); List<PluginInfo> infos = null; URL url; BufferedReader in = null; StringBuilder buffer = new StringBuilder(); try { url = new URL(urlRepo); in = new BufferedReader(new InputStreamReader(url.openStream())); String inputLine; while ((inputLine = in.readLine()) != null) { buffer.append(inputLine); } } finally { try { if (in != null) { in.close(); } } catch (IOException ex) { Logger.getLogger(RemotePluginsManager.class.getName()).log(Level.SEVERE, null, ex); } } infos = (List<PluginInfo>) xStream.fromXML(buffer.toString()); return infos; } | 16,087 |
1 | public List<String> addLine(String username, String URL, int page) { List<String> rss = new ArrayList<String>(); try { URL url = new URL(URL + page); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String line; System.out.println(reader.readLine()); while ((line = reader.readLine()) != null) { String string = "<text>"; String string1 = "</text>"; if (line.contains(string) && !line.contains("@") && !line.contains("http")) { String tweet = line.replace(string, "").replace(string1, "").replace("'", "").trim(); final Tweets tweets = new Tweets(username, tweet, page, false); int save = tweets.save(); tweets.setId((long) save); Thread thread = new Thread(new Runnable() { @Override public void run() { Main.addRow(tweets); } }); thread.start(); System.out.println(tweet); } } reader.close(); } catch (MalformedURLException e) { Log.put(e.toString()); System.out.println(e.toString()); } catch (IOException e) { Log.put(e.toString()); System.out.println(e.toString()); } catch (Exception e) { Log.put(e.toString()); System.out.println(e.toString()); } return rss; } | private static void loadQueryProcessorFactories() { qpFactoryMap = new HashMap<String, QueryProcessorFactoryIF>(); Enumeration<URL> resources = null; try { resources = QueryUtils.class.getClassLoader().getResources(RESOURCE_STRING); } catch (IOException e) { log.error("Error while trying to look for " + "QueryProcessorFactoryIF implementations.", e); } while (resources != null && resources.hasMoreElements()) { URL url = resources.nextElement(); InputStream is = null; try { is = url.openStream(); } catch (IOException e) { log.warn("Error opening stream to QueryProcessorFactoryIF service description.", e); } if (is != null) { BufferedReader rdr = new BufferedReader(new InputStreamReader(is)); String line; try { while ((line = rdr.readLine()) != null) { try { ClassLoader classLoader = Thread.currentThread().getContextClassLoader(); Class<?> c = Class.forName(line, true, classLoader); if (QueryProcessorFactoryIF.class.isAssignableFrom(c)) { QueryProcessorFactoryIF factory = (QueryProcessorFactoryIF) c.newInstance(); qpFactoryMap.put(factory.getQueryLanguage().toUpperCase(), factory); } else { log.warn("Wrong entry for QueryProcessorFactoryIF service " + "description, '" + line + "' is not implementing the " + "correct interface."); } } catch (Exception e) { log.warn("Could not create an instance for " + "QueryProcessorFactoryIF service '" + line + "'."); } } } catch (IOException e) { log.warn("Could not read from QueryProcessorFactoryIF " + "service descriptor.", e); } } } if (!qpFactoryMap.containsKey(DEFAULT_LANGUAGE)) { qpFactoryMap.put(DEFAULT_LANGUAGE, new TologQueryProcessorFactory()); } } | 16,088 |
1 | private void copyFile(String inputPath, String basis, String filename) throws GLMRessourceFileException { try { FileChannel inChannel = new FileInputStream(new File(inputPath)).getChannel(); File target = new File(basis, filename); FileChannel outChannel = new FileOutputStream(target).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); inChannel.close(); outChannel.close(); } catch (Exception e) { throw new GLMRessourceFileException(7); } } | public static int copyFile(File src, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(src).getChannel(); out = new FileOutputStream(dest).getChannel(); in.transferTo(0, in.size(), out); } finally { if (in != null) in.close(); if (out != null) out.close(); } return 1; } | 16,089 |
1 | private String copy(PluginVersionDetail usePluginVersion, File runtimeRepository) { try { File tmpFile = null; try { tmpFile = File.createTempFile("tmpPlugin_", ".zip"); tmpFile.deleteOnExit(); URL url = new URL(usePluginVersion.getUri()); String destFilename = new File(url.getFile()).getName(); File destFile = new File(runtimeRepository, destFilename); InputStream in = null; FileOutputStream out = null; int bytesDownload = 0; long startTime = 0; long endTime = 0; try { URLConnection urlConnection = url.openConnection(); bytesDownload = urlConnection.getContentLength(); in = urlConnection.getInputStream(); out = new FileOutputStream(tmpFile); startTime = System.currentTimeMillis(); IOUtils.copy(in, out); endTime = System.currentTimeMillis(); } finally { if (out != null) { out.close(); } if (in != null) { in.close(); } } String downloadSpeedInfo = null; long downloadSpeed = 0; if ((endTime - startTime) > 0) { downloadSpeed = 1000L * bytesDownload / (endTime - startTime); } if (downloadSpeed == 0) { downloadSpeedInfo = "? B/s"; } else if (downloadSpeed < 1000) { downloadSpeedInfo = downloadSpeed + " B/s"; } else if (downloadSpeed < 1000000) { downloadSpeedInfo = downloadSpeed / 1000 + " KB/s"; } else if (downloadSpeed < 1000000000) { downloadSpeedInfo = downloadSpeed / 1000000 + " MB/s"; } else { downloadSpeedInfo = downloadSpeed / 1000000000 + " GB/s"; } String tmpFileMessageDigest = getMessageDigest(tmpFile.toURI().toURL()).getValue(); if (!tmpFileMessageDigest.equals(usePluginVersion.getMessageDigest().getValue())) { throw new RuntimeException("Downloaded file: " + usePluginVersion.getUri() + " does not have required message digest: " + usePluginVersion.getMessageDigest().getValue()); } if (!isNoop()) { FileUtils.copyFile(tmpFile, destFile); } return bytesDownload + " Bytes " + downloadSpeedInfo; } finally { if (tmpFile != null) { tmpFile.delete(); } } } catch (Exception ex) { throw new RuntimeException("Could not download " + usePluginVersion.getUri() + " to " + runtimeRepository, ex); } } | boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; } | 16,090 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | private boolean get(String surl, File dst, Get get) throws IOException { boolean ret = false; InputStream is = null; OutputStream os = null; try { try { if (surl.startsWith("file://")) { is = new FileInputStream(surl.substring(7)); } else { URL url = new URL(surl); is = url.openStream(); } if (is != null) { os = new FileOutputStream(dst); int read; byte[] buffer = new byte[4096]; while ((read = is.read(buffer)) > 0) { os.write(buffer, 0, read); } ret = true; } } catch (ConnectException ex) { log("Connect exception " + ex.getMessage(), ex, 3); if (dst.exists()) dst.delete(); } catch (UnknownHostException ex) { log("Unknown host " + ex.getMessage(), ex, 3); } catch (FileNotFoundException ex) { log("File not found: " + ex.getMessage(), 3); } } finally { if (is != null) is.close(); if (os != null) os.close(); is = null; os = null; } if (ret) { try { is = new FileInputStream(dst); os = new FileOutputStream(getCachedFile(get)); int read; byte[] buffer = new byte[4096]; while ((read = is.read(buffer)) > 0) { os.write(buffer, 0, read); } } finally { if (is != null) is.close(); if (os != null) os.close(); is = null; os = null; } } return ret; } | 16,091 |
1 | private void copy(File from, File to) throws IOException { InputStream in = new FileInputStream(from); OutputStream out = new FileOutputStream(to); byte[] line = new byte[16384]; int bytes = -1; while ((bytes = in.read(line)) != -1) out.write(line, 0, bytes); in.close(); out.close(); } | public static File copy(String inFileName, String outFileName) throws IOException { File inputFile = new File(inFileName); File outputFile = new File(outFileName); FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return outputFile; } | 16,092 |
0 | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String develBuild = null; String stableBuild = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim(); } bin.close(); if (develBuild != null && stableBuild != null) { doVersionCheck(view, stableBuild, develBuild); } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } | 16,093 |
1 | @Override protected void service(final HttpServletRequest req, final HttpServletResponse res) throws ServletException, IOException { res.setHeader("X-Generator", "VisualMon"); String path = req.getPathInfo(); if (null == path || "".equals(path)) res.sendRedirect(req.getServletPath() + "/"); else if ("/chart".equals(path)) { try { res.setHeader("Cache-Control", "private,no-cache,no-store,must-revalidate"); res.addHeader("Cache-Control", "post-check=0,pre-check=0"); res.setHeader("Expires", "Sat, 26 Jul 1997 05:00:00 GMT"); res.setHeader("Pragma", "no-cache"); res.setDateHeader("Expires", 0); renderChart(req, res); } catch (InterruptedException e) { log.info("Chart generation was interrupted", e); Thread.currentThread().interrupt(); } } else if (path.startsWith("/log_")) { String name = path.substring(5); LogProvider provider = null; for (LogProvider prov : cfg.getLogProviders()) { if (name.equals(prov.getName())) { provider = prov; break; } } if (null == provider) { log.error("Log provider with name \"{}\" not found", name); res.sendError(HttpServletResponse.SC_NOT_FOUND); } else { render(res, provider.getLog(filter.getLocale())); } } else if ("/".equals(path)) { List<LogEntry> logs = new ArrayList<LogEntry>(); for (LogProvider provider : cfg.getLogProviders()) logs.add(new LogEntry(provider.getName(), provider.getTitle(filter.getLocale()))); render(res, new ProbeDataList(filter.getSnapshot(), filter.getAlerts(), logs, ResourceBundle.getBundle("de.frostcode.visualmon.stats", filter.getLocale()).getString("category.empty"), cfg.getDashboardTitle().get(filter.getLocale()))); } else { URL url = Thread.currentThread().getContextClassLoader().getResource(getClass().getPackage().getName().replace('.', '/') + req.getPathInfo()); if (null == url) { res.sendError(HttpServletResponse.SC_NOT_FOUND); return; } res.setDateHeader("Last-Modified", new File(url.getFile()).lastModified()); res.setDateHeader("Expires", new Date().getTime() + YEAR_IN_SECONDS * 1000L); res.setHeader("Cache-Control", "max-age=" + YEAR_IN_SECONDS); URLConnection conn = url.openConnection(); String resourcePath = url.getPath(); String contentType = conn.getContentType(); if (resourcePath.endsWith(".xsl")) { contentType = "text/xml"; res.setCharacterEncoding(ENCODING); } if (contentType == null || "content/unknown".equals(contentType)) { if (resourcePath.endsWith(".css")) contentType = "text/css"; else contentType = getServletContext().getMimeType(resourcePath); } res.setContentType(contentType); res.setContentLength(conn.getContentLength()); OutputStream out = res.getOutputStream(); IOUtils.copy(conn.getInputStream(), out); IOUtils.closeQuietly(conn.getInputStream()); IOUtils.closeQuietly(out); } } | private void processBasicContent() { String[] packageNames = sourceCollector.getPackageNames(); for (int i = 0; i < packageNames.length; i++) { XdcSource[] sources = sourceCollector.getXdcSources(packageNames[i]); File dir = new File(outputDir, packageNames[i]); dir.mkdirs(); Set pkgDirs = new HashSet(); for (int j = 0; j < sources.length; j++) { XdcSource source = sources[j]; Properties patterns = source.getPatterns(); if (patterns != null) { tables.put("patterns", patterns); } pkgDirs.add(source.getFile().getParentFile()); DialectHandler dialectHandler = source.getDialectHandler(); Writer out = null; try { String sourceFilePath = source.getFile().getAbsolutePath(); source.setProcessingProperties(baseProperties, j > 0 ? sources[j - 1].getFileName() : null, j < sources.length - 1 ? sources[j + 1].getFileName() : null); String rootComment = XslUtils.transformToString(sourceFilePath, XSL_PKG + "/source-header.xsl", tables); source.setRootComment(rootComment); Document htmlDoc = XslUtils.transform(sourceFilePath, encoding, dialectHandler.getXslResourcePath(), tables); if (LOG.isInfoEnabled()) { LOG.info("Processing source file " + sourceFilePath); } out = IOUtils.getWriter(new File(dir, source.getFile().getName() + ".html"), docencoding); XmlUtils.printHtml(out, htmlDoc); if (sourceProcessor != null) { sourceProcessor.processSource(source, encoding, docencoding); } XdcSource.clearProcessingProperties(baseProperties); } catch (XmlException e) { LOG.error(e.getMessage(), e); } catch (IOException e) { LOG.error(e.getMessage(), e); } finally { if (out != null) { try { out.close(); } catch (IOException e) { LOG.error(e.getMessage(), e); } } } } for (Iterator iter = pkgDirs.iterator(); iter.hasNext(); ) { File docFilesDir = new File((File) iter.next(), "xdc-doc-files"); if (docFilesDir.exists() && docFilesDir.isDirectory()) { File targetDir = new File(dir, "xdc-doc-files"); targetDir.mkdirs(); try { IOUtils.copyTree(docFilesDir, targetDir); } catch (IOException e) { LOG.error(e.getMessage(), e); } } } } } | 16,094 |
1 | private void copyResource(String resource, File targetDir) { InputStream is = FragmentFileSetTest.class.getResourceAsStream(resource); Assume.assumeNotNull(is); int i = resource.lastIndexOf("/"); String filename; if (i == -1) { filename = resource; } else { filename = resource.substring(i + 1); } try { FileOutputStream fos = new FileOutputStream(new File(targetDir, filename)); IOUtils.copy(is, fos); fos.close(); } catch (IOException e) { e.printStackTrace(); Assert.fail(e.getMessage()); } } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) { inChannel.close(); } if (outChannel != null) { outChannel.close(); } } } | 16,095 |
1 | public String upload() throws IOException { int idx = docIndex.incrementAndGet(); String tmpName = "namefinder/doc_" + idx + "__" + fileFileName; File tmpFile = tmpFile(tmpName); if (tmpFile.exists()) { org.apache.commons.io.FileUtils.deleteQuietly(tmpFile); } org.apache.commons.io.FileUtils.touch(tmpFile); InputStream fileStream = new FileInputStream(file); OutputStream bos = new FileOutputStream(tmpFile); IOUtils.copy(fileStream, bos); bos.close(); fileStream.close(); return tmpUrl(tmpName); } | public void backupXML() { try { TimeStamp timeStamp = new TimeStamp(); String fnameIn = this.fnameXML(); String pathBackup = this.pathXML + "\\Backup\\"; String fnameOut = fnameIn.substring(fnameIn.indexOf(this.fname), fnameIn.length()); fnameOut = fnameOut.substring(0, fnameOut.indexOf("xml")); fnameOut = pathBackup + fnameOut + timeStamp.now("yyyyMMdd-kkmmss") + ".xml"; System.out.println("fnameIn: " + fnameIn); System.out.println("fnameOut: " + fnameOut); FileChannel in = new FileInputStream(fnameIn).getChannel(); FileChannel out = new FileOutputStream(fnameOut).getChannel(); in.transferTo(0, in.size(), out); } catch (Exception e) { central.inform("ORM.backupXML: " + e.toString()); } } | 16,096 |
1 | public void extractPrincipalClasses(String[] info, int numFiles) { String methodName = ""; String finalClass = ""; String WA; String MC; String RA; int[] readCount = new int[numFiles]; int[] writeCount = new int[numFiles]; int[] methodCallCount = new int[numFiles]; int writeMax1; int writeMax2; int readMax; int methodCallMax; int readMaxIndex = 0; int writeMaxIndex1 = 0; int writeMaxIndex2; int methodCallMaxIndex = 0; try { MethodsDestClass = new BufferedWriter(new FileWriter("InfoFiles/MethodsDestclass.txt")); FileInputStream fstreamWriteAttr = new FileInputStream("InfoFiles/WriteAttributes.txt"); DataInputStream inWriteAttr = new DataInputStream(fstreamWriteAttr); BufferedReader writeAttr = new BufferedReader(new InputStreamReader(inWriteAttr)); FileInputStream fstreamMethodsCalled = new FileInputStream("InfoFiles/MethodsCalled.txt"); DataInputStream inMethodsCalled = new DataInputStream(fstreamMethodsCalled); BufferedReader methodsCalled = new BufferedReader(new InputStreamReader(inMethodsCalled)); FileInputStream fstreamReadAttr = new FileInputStream("InfoFiles/ReadAttributes.txt"); DataInputStream inReadAttr = new DataInputStream(fstreamReadAttr); BufferedReader readAttr = new BufferedReader(new InputStreamReader(inReadAttr)); while ((WA = writeAttr.readLine()) != null && (RA = readAttr.readLine()) != null && (MC = methodsCalled.readLine()) != null) { WA = writeAttr.readLine(); RA = readAttr.readLine(); MC = methodsCalled.readLine(); while (WA.compareTo("EndOfClass") != 0 && RA.compareTo("EndOfClass") != 0 && MC.compareTo("EndOfClass") != 0) { methodName = writeAttr.readLine(); readAttr.readLine(); methodsCalled.readLine(); WA = writeAttr.readLine(); MC = methodsCalled.readLine(); RA = readAttr.readLine(); while (true) { if (WA.compareTo("EndOfMethod") == 0 && RA.compareTo("EndOfMethod") == 0 && MC.compareTo("EndOfMethod") == 0) { break; } if (WA.compareTo("EndOfMethod") != 0) { if (WA.indexOf(".") > 0) { WA = WA.substring(0, WA.indexOf(".")); } } if (RA.compareTo("EndOfMethod") != 0) { if (RA.indexOf(".") > 0) { RA = RA.substring(0, RA.indexOf(".")); } } if (MC.compareTo("EndOfMethod") != 0) { if (MC.indexOf(".") > 0) { MC = MC.substring(0, MC.indexOf(".")); } } for (int i = 0; i < numFiles && info[i] != null; i++) { if (info[i].compareTo(WA) == 0) { writeCount[i]++; } if (info[i].compareTo(RA) == 0) { readCount[i]++; } if (info[i].compareTo(MC) == 0) { methodCallCount[i]++; } } if (WA.compareTo("EndOfMethod") != 0) { WA = writeAttr.readLine(); } if (MC.compareTo("EndOfMethod") != 0) { MC = methodsCalled.readLine(); } if (RA.compareTo("EndOfMethod") != 0) { RA = readAttr.readLine(); } } WA = writeAttr.readLine(); MC = methodsCalled.readLine(); RA = readAttr.readLine(); writeMax1 = writeCount[0]; writeMaxIndex1 = 0; for (int i = 1; i < numFiles; i++) { if (writeCount[i] > writeMax1) { writeMax1 = writeCount[i]; writeMaxIndex1 = i; } } writeCount[writeMaxIndex1] = 0; writeMax2 = writeCount[0]; writeMaxIndex2 = 0; for (int i = 1; i < numFiles; i++) { if (writeCount[i] > writeMax2) { writeMax2 = writeCount[i]; writeMaxIndex2 = i; } } readMax = readCount[0]; readMaxIndex = 0; for (int i = 1; i < numFiles; i++) { if (readCount[i] > readMax) { readMax = readCount[i]; readMaxIndex = i; } } methodCallMax = methodCallCount[0]; methodCallMaxIndex = 0; for (int i = 1; i < numFiles; i++) { if (methodCallCount[i] > methodCallMax) { methodCallMax = methodCallCount[i]; methodCallMaxIndex = i; } } boolean isNotEmpty = false; if (writeMax1 > 0 && writeMax2 == 0) { finalClass = info[writeMaxIndex1]; isNotEmpty = true; } else if (writeMax1 == 0) { if (readMax != 0) { finalClass = info[readMaxIndex]; isNotEmpty = true; } else if (methodCallMax != 0) { finalClass = info[methodCallMaxIndex]; isNotEmpty = true; } } if (isNotEmpty == true) { MethodsDestClass.write(methodName); MethodsDestClass.newLine(); MethodsDestClass.write(finalClass); MethodsDestClass.newLine(); isNotEmpty = false; } for (int j = 0; j < numFiles; j++) { readCount[j] = 0; writeCount[j] = 0; methodCallCount[j] = 0; } } } writeAttr.close(); methodsCalled.close(); readAttr.close(); MethodsDestClass.close(); int sizeInfoArray = 0; sizeInfoArray = infoArraySize(); boolean classWritten = false; principleClass = new String[100]; principleMethod = new String[100]; principleMethodsClass = new String[100]; String infoArray[] = new String[sizeInfoArray]; String field; int counter = 0; FileInputStream fstreamDestMethod = new FileInputStream("InfoFiles/MethodsDestclass.txt"); DataInputStream inDestMethod = new DataInputStream(fstreamDestMethod); BufferedReader destMethod = new BufferedReader(new InputStreamReader(inDestMethod)); PrincipleClassGroup = new BufferedWriter(new FileWriter("InfoFiles/PrincipleClassGroup.txt")); while ((field = destMethod.readLine()) != null) { infoArray[counter] = field; counter++; } for (int i = 0; i < numFiles; i++) { for (int j = 0; j < counter - 1 && info[i] != null; j++) { if (infoArray[j + 1].compareTo(info[i]) == 0) { if (classWritten == false) { PrincipleClassGroup.write(infoArray[j + 1]); PrincipleClassGroup.newLine(); principleClass[principleClassCount] = infoArray[j + 1]; principleClassCount++; classWritten = true; } PrincipleClassGroup.write(infoArray[j]); principleMethod[principleMethodCount] = infoArray[j]; principleMethodsClass[principleMethodCount] = infoArray[j + 1]; principleMethodCount++; PrincipleClassGroup.newLine(); } } if (classWritten == true) { PrincipleClassGroup.write("EndOfClass"); PrincipleClassGroup.newLine(); classWritten = false; } } destMethod.close(); PrincipleClassGroup.close(); readFileCount = readFileCount(); writeFileCount = writeFileCount(); methodCallFileCount = methodCallFileCount(); readArray = new String[readFileCount]; writeArray = new String[writeFileCount]; callArray = new String[methodCallFileCount]; initializeArrays(); constructFundamentalView(); constructInteractionView(); constructAssociationView(); } catch (IOException e) { e.printStackTrace(); } } | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 16,097 |
0 | @Test public void testWrite() throws Exception { MrstkXmlFileReader reader = new MrstkXmlFileReader(); reader.setFileName("..//data//MrstkXML//prototype3.xml"); reader.read(); SpectrumArray sp = reader.getOutput(); File tmp = File.createTempFile("mrstktest", ".xml"); System.out.println("Writing temp file: " + tmp.getAbsolutePath()); MrstkXmlFileWriter writer = new MrstkXmlFileWriter(sp); writer.setFile(tmp); writer.write(); MrstkXmlFileReader reader2 = new MrstkXmlFileReader(); reader2.setFileName(writer.getFile().getAbsolutePath()); reader2.read(); SpectrumArray sp2 = reader2.getOutput(); assertTrue(sp.equals(sp2)); } | public static boolean update(Departamento objDepartamento) { int result = 0; Connection c = DBConnection.getConnection(); PreparedStatement pst = null; if (c == null) { return false; } try { c.setAutoCommit(false); String sql = "update departamento set nome = ?, sala = ?, telefone = ?, id_orgao = ? where id_departamento= ?"; pst = c.prepareStatement(sql); pst.setString(1, objDepartamento.getNome()); pst.setString(2, objDepartamento.getSala()); pst.setString(3, objDepartamento.getTelefone()); pst.setLong(4, (objDepartamento.getOrgao()).getCodigo()); pst.setInt(5, objDepartamento.getCodigo()); result = pst.executeUpdate(); c.commit(); } catch (SQLException e) { try { c.rollback(); } catch (SQLException e1) { e1.printStackTrace(); } System.out.println("[DepartamentoDAO.update] Erro ao atualizar -> " + e.getMessage()); } finally { DBConnection.closePreparedStatement(pst); DBConnection.closeConnection(c); } if (result > 0) { return true; } else { return false; } } | 16,098 |
0 | public static String upload_file(String sessionid, String localFilePath, String remoteTagPath) { String jsonstring = "If you see this message, there is some problem inside the function:upload_file()"; String srcPath = localFilePath; String uploadUrl = "https://s2.cloud.cm/rpc/json/?session_id=" + sessionid + "&c=Storage&m=upload_file&tag=" + remoteTagPath; String end = "\r\n"; String twoHyphens = "--"; String boundary = "******"; try { URL url = new URL(uploadUrl); HttpURLConnection httpURLConnection = (HttpURLConnection) url.openConnection(); httpURLConnection.setDoInput(true); httpURLConnection.setDoOutput(true); httpURLConnection.setUseCaches(false); httpURLConnection.setRequestMethod("POST"); httpURLConnection.setRequestProperty("Connection", "Keep-Alive"); httpURLConnection.setRequestProperty("Charset", "UTF-8"); httpURLConnection.setRequestProperty("Content-Type", "multipart/form-data;boundary=" + boundary); DataOutputStream dos = new DataOutputStream(httpURLConnection.getOutputStream()); dos.writeBytes(twoHyphens + boundary + end); dos.writeBytes("Content-Disposition: form-data; name=\"file\"; filename=\"" + srcPath.substring(srcPath.lastIndexOf("/") + 1) + "\"" + end); dos.writeBytes(end); FileInputStream fis = new FileInputStream(srcPath); byte[] buffer = new byte[8192]; int count = 0; while ((count = fis.read(buffer)) != -1) { dos.write(buffer, 0, count); } fis.close(); dos.writeBytes(end); dos.writeBytes(twoHyphens + boundary + twoHyphens + end); dos.flush(); InputStream is = httpURLConnection.getInputStream(); InputStreamReader isr = new InputStreamReader(is, "utf-8"); BufferedReader br = new BufferedReader(isr); jsonstring = br.readLine(); dos.close(); is.close(); return jsonstring; } catch (Exception e) { e.printStackTrace(); } return jsonstring; } | public void testHttpsPersistentConnection() throws Throwable { setUpStoreProperties(); try { SSLContext ctx = getContext(); ServerSocket ss = ctx.getServerSocketFactory().createServerSocket(0); TestHostnameVerifier hnv = new TestHostnameVerifier(); HttpsURLConnection.setDefaultHostnameVerifier(hnv); URL url = new URL("https://localhost:" + ss.getLocalPort()); HttpsURLConnection connection = (HttpsURLConnection) url.openConnection(); SSLSocket peerSocket = (SSLSocket) doPersistentInteraction(connection, ss); checkConnectionStateParameters(connection, peerSocket); connection.connect(); } finally { tearDownStoreProperties(); } } | 16,099 |
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