label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
|---|---|---|---|
0 | public static String encodeFromFile(String filename) throws java.io.IOException, URISyntaxException { String encodedData = null; Base641.InputStream bis = null; File file; try { URL url = new URL(filename); URLConnection conn = url.openConnection(); file = new File("myfile.doc"); java.io.InputStream inputStream = (java.io.InputStream) conn.getInputStream(); FileOutputStream out = new FileOutputStream(file); byte buf[] = new byte[1024]; int len; while ((len = inputStream.read(buf)) > 0) out.write(buf, 0, len); out.close(); inputStream.close(); byte[] buffer = new byte[Math.max((int) (file.length() * 1.4), 40)]; int length = 0; int numBytes = 0; bis = new Base641.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(file)), Base641.ENCODE); while ((numBytes = bis.read(buffer, length, 4096)) >= 0) { length += numBytes; } encodedData = new String(buffer, 0, length, Base641.PREFERRED_ENCODING); } catch (java.io.IOException e) { throw e; } finally { try { bis.close(); } catch (Exception e) { } } return encodedData; } | public static double[][] getCurrency() throws IOException { URL url = new URL("http://hk.finance.yahoo.com/currency"); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), "big5")); double currency[][] = new double[11][11]; while (true) { String line = in.readLine(); String reg = "<td\\s((align=\"right\"\\sclass=\"yfnc_tabledata1\")" + "|(class=\"yfnc_tabledata1\"\\salign=\"right\"))>" + "([\\d|\\.]+)</td>"; Matcher m = Pattern.compile(reg).matcher(line); int i = 0, j = 0; boolean isfound = false; while (m.find()) { isfound = true; currency[i][j] = Double.parseDouble(m.group(4)); if (j == 10) { j = 0; i++; } else j++; } if (isfound) break; } return currency; } | 17,900 |
1 | private void translate(String sender, String message) { StringTokenizer st = new StringTokenizer(message, " "); message = message.replaceFirst(st.nextToken(), ""); String typeCode = st.nextToken(); message = message.replaceFirst(typeCode, ""); try { String data = URLEncoder.encode(message, "UTF-8"); URL url = new URL("http://babelfish.altavista.com/babelfish/tr?doit=done&urltext=" + data + "&lp=" + typeCode); URLConnection conn = url.openConnection(); conn.setDoOutput(true); OutputStreamWriter wr = new OutputStreamWriter(conn.getOutputStream()); wr.write(data); wr.flush(); BufferedReader rd = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line; while ((line = rd.readLine()) != null) { if (line.contains("input type=hidden name=\"q\"")) { String[] tokens = line.split("\""); sendMessage(sender, tokens[3]); } } wr.close(); rd.close(); } catch (Exception e) { } } | private void publishPage(URL url, String path, File outputFile) throws IOException { if (debug) { System.out.println(" publishing page: " + path); System.out.println(" url == " + url); System.out.println(" file == " + outputFile); } StringBuffer sb = new StringBuffer(); try { InputStream is = url.openStream(); InputStreamReader isr = new InputStreamReader(is); BufferedReader br = new BufferedReader(isr); boolean firstLine = true; String line; do { line = br.readLine(); if (line != null) { if (!firstLine) sb.append("\n"); else firstLine = false; sb.append(line); } } while (line != null); br.close(); } catch (IOException e) { String mess = outputFile.toString() + ": " + e.getMessage(); errors.add(mess); } FileOutputStream fos = new FileOutputStream(outputFile); OutputStreamWriter sw = new OutputStreamWriter(fos); sw.write(sb.toString()); sw.close(); if (prepareArchive) archiveFiles.add(new ArchiveFile(path, outputFile)); } | 17,901 |
0 | public static String digest(String algorithm, String text) { MessageDigest mDigest = null; try { mDigest = MessageDigest.getInstance(algorithm); mDigest.update(text.getBytes(ENCODING)); } catch (NoSuchAlgorithmException nsae) { Logger.error(Encryptor.class, nsae.getMessage(), nsae); } catch (UnsupportedEncodingException uee) { Logger.error(Encryptor.class, uee.getMessage(), uee); } byte raw[] = mDigest.digest(); return (new BASE64Encoder()).encode(raw); } | private FTPClient connect() throws FTPException { try { FTPClient ftp = new FTPClient(); ftp.connect(host, port); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); System.err.println("FTP server refused connection."); } ftp.login(userName, password); ftp.setFileType(FTP.BINARY_FILE_TYPE); return ftp; } catch (SocketException e) { throw new FTPException("Failed to connect to server", e); } catch (IOException e) { throw new FTPException("Failed to connect to server", e); } } | 17,902 |
0 | public void delete(int row) throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; try { conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); int max = findMaxRank(stmt); if ((row < 1) || (row > max)) throw new IllegalArgumentException("Row number not between 1 and " + max); stmt.executeUpdate("delete from WordClassifications where Rank = " + row); for (int i = row; i < max; ++i) stmt.executeUpdate("update WordClassifications set Rank = " + i + " where Rank = " + (i + 1)); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | public static boolean copy(File src, FileSystem dstFS, Path dst, boolean deleteSource, Configuration conf) throws IOException { dst = checkDest(src.getName(), dstFS, dst, false); if (src.isDirectory()) { if (!dstFS.mkdirs(dst)) { return false; } File contents[] = src.listFiles(); for (int i = 0; i < contents.length; i++) { copy(contents[i], dstFS, new Path(dst, contents[i].getName()), deleteSource, conf); } } else if (src.isFile()) { InputStream in = null; OutputStream out = null; try { in = new FileInputStream(src); out = dstFS.create(dst); IOUtils.copyBytes(in, out, conf); } catch (IOException e) { IOUtils.closeStream(out); IOUtils.closeStream(in); throw e; } } else { throw new IOException(src.toString() + ": No such file or directory"); } if (deleteSource) { return FileUtil.fullyDelete(src); } else { return true; } } | 17,903 |
0 | @Override protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { if (doAuth(request, response)) { Connection conn = null; try { int UID = icsm.getIntChatSession(request).getUID(); conn = getJDBCConnection(icsm.getHeavyDatabaseConnectionPool(), request, response, HttpServletResponse.SC_SERVICE_UNAVAILABLE); if (conn == null) return; ResultSet rs = IntChatDatabaseOperations.executeQuery(conn, "SELECT id FROM ic_messagetypes WHERE templatename='" + IntChatConstants.MessageTemplates.IC_FILES + "' LIMIT 1"); if (rs.next()) { int fileTypeID = rs.getInt("id"); String recipients = request.getHeader(IntChatConstants.HEADER_FILERECIPIENTS); rs.getStatement().close(); rs = null; if (recipients != null) { HashMap<String, String> hm = Tools.parseMultiparamLine(request.getHeader("Content-Disposition")); String fileName = URLDecoder.decode(hm.get("filename"), IntChatServerDefaults.ENCODING); long fileLength = (request.getHeader("Content-Length") != null ? Long.parseLong(request.getHeader("Content-Length")) : -1); fileLength = (request.getHeader(IntChatConstants.HEADER_FILELENGTH) != null ? Long.parseLong(request.getHeader(IntChatConstants.HEADER_FILELENGTH)) : fileLength); long maxFileSize = RuntimeParameters.getIntValue(ParameterNames.MAX_FILE_SIZE) * 1048576; if (maxFileSize > 0 && fileLength > maxFileSize) { request.getInputStream().close(); response.sendError(HttpServletResponse.SC_REQUEST_ENTITY_TOO_LARGE); return; } long now = System.currentTimeMillis(); long nextid = ic_messages_id_seq.nextval(); IntChatServletInputStream in = new IntChatServletInputStream(request); IntChatMessage icm = null; conn.setAutoCommit(false); try { PreparedStatement ps = conn.prepareStatement("INSERT INTO ic_messages (id, tid, mhead, mbody, mdate, sid) VALUES (?, ?, ?, ?, ?, ?)"); ps.setLong(1, nextid); ps.setInt(2, fileTypeID); ps.setString(3, fileName); ps.setString(4, Long.toString(fileLength)); ps.setLong(5, now); ps.setInt(6, UID); ps.executeUpdate(); ps.close(); if (!insertBLOB(conn, in, fileLength, nextid, maxFileSize)) { conn.rollback(); return; } icm = new IntChatMessage(false, fileTypeID, null, null); String[] id = recipients.split(","); int id1; for (int i = 0; i < id.length; i++) { id1 = Integer.parseInt(id[i].trim()); IntChatDatabaseOperations.executeUpdate(conn, "INSERT INTO ic_recipients (mid, rid) VALUES ('" + nextid + "', '" + id1 + "')"); icm.addTo(id1); } conn.commit(); } catch (Exception e) { conn.rollback(); throw e; } finally { conn.setAutoCommit(true); } if (icm != null) { icm.setID(nextid); icm.setDate(new Timestamp(now - TimeZone.getDefault().getOffset(now))); icm.setFrom(UID); icm.setHeadText(fileName); icm.setBodyText(Long.toString(fileLength)); icsm.onClientSentMessage(icm); } response.setStatus(HttpServletResponse.SC_OK); } else { response.setStatus(HttpServletResponse.SC_BAD_REQUEST); } } else { response.setStatus(HttpServletResponse.SC_NOT_FOUND); } if (rs != null) { rs.getStatement().close(); rs = null; } } catch (RetryRequest rr) { throw rr; } catch (Exception e) { Tools.makeErrorResponse(request, response, HttpServletResponse.SC_INTERNAL_SERVER_ERROR, e); } finally { try { if (conn != null) icsm.getHeavyDatabaseConnectionPool().releaseConnection(conn); } catch (Exception e) { } } } } | public Dbf(URL url) throws java.io.IOException, DbfFileException { if (DEBUG) System.out.println("---->uk.ac.leeds.ccg.dbffile.Dbf constructed. Will identify itself as " + DBC); URLConnection uc = url.openConnection(); InputStream in = uc.getInputStream(); EndianDataInputStream sfile = new EndianDataInputStream(in); init(sfile); } | 17,904 |
0 | public void sortIndexes() { int i, j, count; int t; count = m_ItemIndexes.length; for (i = 1; i < count; i++) { for (j = 0; j < count - i; j++) { if (m_ItemIndexes[j] > m_ItemIndexes[j + 1]) { t = m_ItemIndexes[j]; m_ItemIndexes[j] = m_ItemIndexes[j + 1]; m_ItemIndexes[j + 1] = t; } } } } | public Document getSdlDomResource(String aResourceName) throws SdlException { InputStream in = null; try { URL url = getDeploymentContext().getResourceURL(aResourceName); if (url == null) { return null; } else { in = url.openStream(); return getSdlParser().loadSdlDocument(in, null); } } catch (Throwable t) { logger.error("Error: unable to load: " + aResourceName + " from " + getDeploymentContext().getDeploymentLocation()); throw new SdlDeploymentException(MessageFormat.format("unable to load: {0} from {1}", new Object[] { aResourceName, getDeploymentContext().getDeploymentLocation() }), t); } finally { SdlCloser.close(in); } } | 17,905 |
1 | private void transform(CommandLine commandLine) throws IOException { Reader reader; if (commandLine.hasOption('i')) { reader = createFileReader(commandLine.getOptionValue('i')); } else { reader = createStandardInputReader(); } Writer writer; if (commandLine.hasOption('o')) { writer = createFileWriter(commandLine.getOptionValue('o')); } else { writer = createStandardOutputWriter(); } String mapRule = commandLine.getOptionValue("m"); try { SrxTransformer transformer = new SrxAnyTransformer(); Map<String, Object> parameterMap = new HashMap<String, Object>(); if (mapRule != null) { parameterMap.put(Srx1Transformer.MAP_RULE_NAME, mapRule); } transformer.transform(reader, writer, parameterMap); } finally { cleanupReader(reader); cleanupWriter(writer); } } | private void removeSessionId(InputStream inputStream, Output output) throws IOException { String jsessionid = RewriteUtils.getSessionId(target); boolean textContentType = ResourceUtils.isTextContentType(httpClientResponse.getHeader(HttpHeaders.CONTENT_TYPE), target.getDriver().getConfiguration().getParsableContentTypes()); if (jsessionid == null || !textContentType) { IOUtils.copy(inputStream, output.getOutputStream()); } else { String charset = httpClientResponse.getContentCharset(); if (charset == null) { charset = "ISO-8859-1"; } String content = IOUtils.toString(inputStream, charset); content = removeSessionId(jsessionid, content); if (output.getHeader(HttpHeaders.CONTENT_LENGTH) != null) { output.setHeader(HttpHeaders.CONTENT_LENGTH, Integer.toString(content.length())); } OutputStream outputStream = output.getOutputStream(); IOUtils.write(content, outputStream, charset); } inputStream.close(); } | 17,906 |
0 | public TreeMap getStrainMap() { TreeMap strainMap = new TreeMap(); String server = ""; try { Datasource[] ds = DatasourceManager.getDatasouce(alias, version, DatasourceManager.ALL_CONTAINS_GROUP); for (int i = 0; i < ds.length; i++) { if (ds[i].getDescription().startsWith(MOUSE_DBSNP)) { if (ds[i].getServer().length() == 0) { Connection con = ds[i].getConnection(); strainMap = Action.lineMode.regularSQL.GenotypeDataSearchAction.getStrainMap(con); break; } else { server = ds[i].getServer(); HashMap serverUrlMap = InitXml.getInstance().getServerMap(); String serverUrl = (String) serverUrlMap.get(server); URL url = new URL(serverUrl + servletName); URLConnection uc = url.openConnection(); uc.setDoOutput(true); OutputStream os = uc.getOutputStream(); StringBuffer buf = new StringBuffer(); buf.append("viewType=getstrains"); buf.append("&hHead=" + hHead); buf.append("&hCheck=" + version); PrintStream ps = new PrintStream(os); ps.print(buf.toString()); ps.close(); ObjectInputStream ois = new ObjectInputStream(uc.getInputStream()); strainMap = (TreeMap) ois.readObject(); ois.close(); } } } } catch (Exception e) { log.error("strain map", e); } return strainMap; } | public static String sha256(String str) { StringBuffer buf = new StringBuffer(); try { MessageDigest md = MessageDigest.getInstance("SHA-256"); byte[] data = new byte[64]; md.update(str.getBytes("iso-8859-1"), 0, str.length()); data = md.digest(); for (int i = 0; i < data.length; i++) { int halfbyte = (data[i] >>> 4) & 0x0F; int two_halfs = 0; do { if ((0 <= halfbyte) && (halfbyte <= 9)) buf.append((char) ('0' + halfbyte)); else buf.append((char) ('a' + (halfbyte - 10))); halfbyte = data[i] & 0x0F; } while (two_halfs++ < 1); } } catch (Exception e) { errorLog("{Malgn.sha256} " + e.getMessage()); } return buf.toString(); } | 17,907 |
0 | @Override public User updateUser(User bean) throws SitoolsException { checkUser(); Connection cx = null; try { cx = ds.getConnection(); cx.setAutoCommit(false); PreparedStatement st; int i = 1; if (bean.getSecret() != null && !"".equals(bean.getSecret())) { st = cx.prepareStatement(jdbcStoreResource.UPDATE_USER_WITH_PW); st.setString(i++, bean.getFirstName()); st.setString(i++, bean.getLastName()); st.setString(i++, bean.getSecret()); st.setString(i++, bean.getEmail()); st.setString(i++, bean.getIdentifier()); } else { st = cx.prepareStatement(jdbcStoreResource.UPDATE_USER_WITHOUT_PW); st.setString(i++, bean.getFirstName()); st.setString(i++, bean.getLastName()); st.setString(i++, bean.getEmail()); st.setString(i++, bean.getIdentifier()); } st.executeUpdate(); st.close(); if (bean.getProperties() != null) { deleteProperties(bean.getIdentifier(), cx); createProperties(bean, cx); } if (!cx.getAutoCommit()) { cx.commit(); } } catch (SQLException e) { try { cx.rollback(); } catch (SQLException e1) { throw new SitoolsException("UPDATE_USER ROLLBACK" + e1.getMessage(), e1); } throw new SitoolsException("UPDATE_USER " + e.getMessage(), e); } finally { closeConnection(cx); } return getUserById(bean.getIdentifier()); } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 17,908 |
0 | public void beforeMethod(TestBase testBase) throws IOException { TFileFactory fileFactory = new TFileFactory(new InMemoryFileSystem()); ftpServer.cleanFileSystem(fileFactory); TDirectory rootDir = fileFactory.dir("/"); testBase.inject(rootDir); FTPClient ftpClient = new FTPClient(); ftpClient.connect("localhost", 8021); ftpClient.login("anonymous", "test@test.com"); testBase.inject(ftpClient); } | protected HttpURLConnection loadTileFromOsm(Tile tile) throws IOException { URL url; url = new URL(tile.getUrl()); HttpURLConnection urlConn = (HttpURLConnection) url.openConnection(); prepareHttpUrlConnection(urlConn); urlConn.setReadTimeout(30000); return urlConn; } | 17,909 |
1 | public static void _he3Decode(String in_file) { try { File out = new File(in_file + dec_extension); File in = new File(in_file); int file_size = (int) in.length(); FileInputStream in_stream = new FileInputStream(in_file); out.createNewFile(); FileOutputStream out_stream = new FileOutputStream(out.getName()); InputStreamReader inputReader = new InputStreamReader(in_stream, "ISO8859_1"); OutputStreamWriter outputWriter = new OutputStreamWriter(out_stream, "ISO8859_1"); ByteArrayOutputStream os = new ByteArrayOutputStream(file_size); byte byte_arr[] = new byte[8]; char char_arr[] = new char[8]; int buff_size = char_arr.length; int _fetched = 0; int _chars_read = 0; System.out.println(appname + ".\n" + dec_mode + ": " + in_file + "\n" + dec_mode + " to: " + in_file + dec_extension + "\n" + "\nreading: "); while (_fetched < file_size) { _chars_read = inputReader.read(char_arr, 0, buff_size); if (_chars_read == -1) break; for (int i = 0; i < _chars_read; i++) byte_arr[i] = (byte) char_arr[i]; os.write(byte_arr, 0, _chars_read); _fetched += _chars_read; System.out.print("*"); } System.out.print("\n" + dec_mode + ": "); outputWriter.write(new String(_decode((ByteArrayOutputStream) os), "ISO-8859-1")); System.out.print("complete\n\n"); } catch (java.io.FileNotFoundException fnfEx) { System.err.println("Exception: " + fnfEx.getMessage()); } catch (java.io.IOException ioEx) { System.err.println("Exception: " + ioEx.getMessage()); } } | public static void copyFile(String oldPathFile, String newPathFile) { try { int bytesum = 0; int byteread = 0; File oldfile = new File(oldPathFile); if (oldfile.exists()) { InputStream inStream = new FileInputStream(oldPathFile); FileOutputStream fs = new FileOutputStream(newPathFile); byte[] buffer = new byte[2048]; while ((byteread = inStream.read(buffer)) != -1) { bytesum += byteread; fs.write(buffer, 0, byteread); } inStream.close(); } else { System.err.println(FileUtil.class.toString() + ":不存在file" + oldPathFile); } } catch (Exception e) { System.err.println(FileUtil.class.toString() + ":复制file" + oldPathFile + "到" + newPathFile + "出错!"); } } | 17,910 |
0 | public byte[] authClient(String host, String user, String passwd, String realm, String serverChallenge) throws IOException { ByteArrayOutputStream bos = new ByteArrayOutputStream(); OutputStream b64os = new BASE64EncoderStream(bos, Integer.MAX_VALUE); SecureRandom random; try { random = new SecureRandom(); md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ex) { if (debugout != null) debugout.println("DEBUG DIGEST-MD5: " + ex); throw new IOException(ex.toString()); } StringBuffer result = new StringBuffer(); uri = "smtp/" + host; String nc = "00000001"; String qop = "auth"; byte[] bytes = new byte[32]; int resp; if (debugout != null) debugout.println("DEBUG DIGEST-MD5: Begin authentication ..."); Hashtable map = tokenize(serverChallenge); if (realm == null) { String text = (String) map.get("realm"); realm = text != null ? new StringTokenizer(text, ",").nextToken() : host; } String nonce = (String) map.get("nonce"); random.nextBytes(bytes); b64os.write(bytes); b64os.flush(); String cnonce = bos.toString(); bos.reset(); md5.update(md5.digest(ASCIIUtility.getBytes(user + ":" + realm + ":" + passwd))); md5.update(ASCIIUtility.getBytes(":" + nonce + ":" + cnonce)); clientResponse = toHex(md5.digest()) + ":" + nonce + ":" + nc + ":" + cnonce + ":" + qop + ":"; md5.update(ASCIIUtility.getBytes("AUTHENTICATE:" + uri)); md5.update(ASCIIUtility.getBytes(clientResponse + toHex(md5.digest()))); result.append("username=\"" + user + "\""); result.append(",realm=\"" + realm + "\""); result.append(",qop=" + qop); result.append(",nc=" + nc); result.append(",nonce=\"" + nonce + "\""); result.append(",cnonce=\"" + cnonce + "\""); result.append(",digest-uri=\"" + uri + "\""); result.append(",response=" + toHex(md5.digest())); if (debugout != null) debugout.println("DEBUG DIGEST-MD5: Response => " + result.toString()); b64os.write(ASCIIUtility.getBytes(result.toString())); b64os.flush(); return bos.toByteArray(); } | public static void main(String[] args) throws Exception { HttpGet get = new HttpGet("https://localhost/docs/index.html"); DefaultHttpClient client = new DefaultHttpClient(); ServerConfig config = new ServerConfig(new Properties()); config.setParam("https.keyStoreFile", "test.keystore"); config.setParam("https.keyPassword", "nopassword"); config.setParam("https.keyStoreType", "JKS"); config.setParam("https.protocol", "SSLv3"); SSLContextCreator ssl = new SSLContextCreator(config); SSLContext ctx = ssl.getSSLContext(); SSLSocketFactory socketFactory = new SSLSocketFactory(ctx); Scheme sch = new Scheme("https", 443, socketFactory); client.getConnectionManager().getSchemeRegistry().register(sch); HttpResponse response = client.execute(get); System.out.println(response.getStatusLine().getStatusCode()); } | 17,911 |
1 | public static void copyFile(final File sourceFile, final File destFile) throws IOException { if (!destFile.exists()) destFile.createNewFile(); FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) source.close(); if (destination != null) destination.close(); } } | public Parameters getParameters(HttpExchange http) throws IOException { ParametersImpl params = new ParametersImpl(); String query = null; if (http.getRequestMethod().equalsIgnoreCase("GET")) { query = http.getRequestURI().getRawQuery(); } else if (http.getRequestMethod().equalsIgnoreCase("POST")) { InputStream in = new MaxInputStream(http.getRequestBody()); if (in != null) { ByteArrayOutputStream bytes = new ByteArrayOutputStream(); IOUtils.copyTo(in, bytes); query = new String(bytes.toByteArray()); in.close(); } } else { throw new IOException("Method not supported " + http.getRequestMethod()); } if (query != null) { for (String s : query.split("[&]")) { s = s.replace('+', ' '); int eq = s.indexOf('='); if (eq > 0) { params.add(URLDecoder.decode(s.substring(0, eq), "UTF-8"), URLDecoder.decode(s.substring(eq + 1), "UTF-8")); } } } return params; } | 17,912 |
0 | public static double[][] getCurrency() throws IOException { URL url = new URL("http://hk.finance.yahoo.com/currency"); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), "big5")); double currency[][] = new double[11][11]; while (true) { String line = in.readLine(); String reg = "<td\\s((align=\"right\"\\sclass=\"yfnc_tabledata1\")" + "|(class=\"yfnc_tabledata1\"\\salign=\"right\"))>" + "([\\d|\\.]+)</td>"; Matcher m = Pattern.compile(reg).matcher(line); int i = 0, j = 0; boolean isfound = false; while (m.find()) { isfound = true; currency[i][j] = Double.parseDouble(m.group(4)); if (j == 10) { j = 0; i++; } else j++; } if (isfound) break; } return currency; } | public Configuration(URL url) { InputStream in = null; try { load(in = url.openStream()); } catch (Exception e) { throw new RuntimeException("Could not load configuration from " + url, e); } finally { if (in != null) { try { in.close(); } catch (IOException ignore) { } } } } | 17,913 |
0 | public static void main(String[] args) throws Exception { DefaultHttpClient httpclient = new DefaultHttpClient(); HttpGet httpget = new HttpGet("https://portal.sun.com/portal/dt"); HttpResponse response = httpclient.execute(httpget); HttpEntity entity = response.getEntity(); System.out.println("Login form get: " + response.getStatusLine()); if (entity != null) { entity.consumeContent(); } System.out.println("Initial set of cookies:"); List<Cookie> cookies = httpclient.getCookieStore().getCookies(); if (cookies.isEmpty()) { System.out.println("None"); } else { for (int i = 0; i < cookies.size(); i++) { System.out.println("- " + cookies.get(i).toString()); } } HttpPost httpost = new HttpPost("https://portal.sun.com/amserver/UI/Login?" + "org=self_registered_users&" + "goto=/portal/dt&" + "gotoOnFail=/portal/dt?error=true"); List<NameValuePair> nvps = new ArrayList<NameValuePair>(); nvps.add(new BasicNameValuePair("IDToken1", "username")); nvps.add(new BasicNameValuePair("IDToken2", "password")); httpost.setEntity(new UrlEncodedFormEntity(nvps, HTTP.UTF_8)); response = httpclient.execute(httpost); entity = response.getEntity(); System.out.println("Login form get: " + response.getStatusLine()); if (entity != null) { entity.consumeContent(); } System.out.println("Post logon cookies:"); cookies = httpclient.getCookieStore().getCookies(); if (cookies.isEmpty()) { System.out.println("None"); } else { for (int i = 0; i < cookies.size(); i++) { System.out.println("- " + cookies.get(i).toString()); } } } | public int editRecipe(int oldRecipeId, Recipe newRecipe) throws Exception { PreparedStatement pst1 = null; PreparedStatement pst2 = null; ResultSet rs = null; int retVal = -1; try { conn = getConnection(); pst1 = conn.prepareStatement("UPDATE recipes SET name = ?, instructions = ?, category_id =? WHERE recipe_id = ?"); pst1.setString(1, newRecipe.getName()); pst1.setString(2, newRecipe.getInstructions()); pst1.setInt(3, newRecipe.getCategoryId()); pst1.setInt(4, oldRecipeId); int rsVal = pst1.executeUpdate(); conn.commit(); if (rsVal > 0) { updateIngredients(newRecipe, oldRecipeId); MainFrame.recipePanel.update(); retVal = oldRecipeId; } else { retVal = -1; } conn.commit(); } catch (Exception e) { conn.rollback(); throw new Exception("Can't edit recipe, the exception was " + e.getMessage()); } finally { try { if (rs != null) rs.close(); rs = null; if (pst1 != null) pst1.close(); pst1 = null; if (pst2 != null) pst2.close(); pst2 = null; } catch (SQLException sqle) { MainFrame.appendStatusText("Can't close database connection."); } } return retVal; } | 17,914 |
1 | public void copy(File src, File dest) throws FileNotFoundException, IOException { FileInputStream srcStream = new FileInputStream(src); FileOutputStream destStream = new FileOutputStream(dest); FileChannel srcChannel = srcStream.getChannel(); FileChannel destChannel = destStream.getChannel(); srcChannel.transferTo(0, srcChannel.size(), destChannel); destChannel.close(); srcChannel.close(); destStream.close(); srcStream.close(); } | public static void main(String[] args) throws Exception { String localSrc = args[0]; String dst = args[1]; InputStream in = new BufferedInputStream(new FileInputStream(localSrc)); Configuration conf = new Configuration(); FileSystem fs = FileSystem.get(URI.create(dst), conf); OutputStream out = fs.create(new Path(dst), new Progressable() { public void progress() { System.out.print("."); } }); IOUtils.copyBytes(in, out, 4096, true); } | 17,915 |
1 | public static void streamCopyFile(File srcFile, File destFile) { try { FileInputStream fi = new FileInputStream(srcFile); FileOutputStream fo = new FileOutputStream(destFile); byte[] buf = new byte[1024]; int readLength = 0; while (readLength != -1) { readLength = fi.read(buf); if (readLength != -1) { fo.write(buf, 0, readLength); } } fo.close(); fi.close(); } catch (Exception e) { } } | private static void createCompoundData(String dir, String type) { try { Set s = new HashSet(); File nouns = new File(dir + "index." + type); FileInputStream fis = new FileInputStream(nouns); InputStreamReader reader = new InputStreamReader(fis); StringBuffer sb = new StringBuffer(); int chr = reader.read(); while (chr >= 0) { if (chr == '\n' || chr == '\r') { String line = sb.toString(); if (line.length() > 0) { String[] spaceSplit = PerlHelp.split(line); for (int i = 0; i < spaceSplit.length; i++) { if (spaceSplit[i].indexOf('_') >= 0) { s.add(spaceSplit[i].replace('_', ' ')); } } } sb.setLength(0); } else { sb.append((char) chr); } chr = reader.read(); } System.out.println(type + " size=" + s.size()); File output = new File(dir + "compound." + type + "s.gz"); FileOutputStream fos = new FileOutputStream(output); GZIPOutputStream gzos = new GZIPOutputStream(new BufferedOutputStream(fos)); PrintWriter writer = new PrintWriter(gzos); writer.println("# This file was extracted from WordNet data, the following copyright notice"); writer.println("# from WordNet is attached."); writer.println("#"); writer.println("# This software and database is being provided to you, the LICENSEE, by "); writer.println("# Princeton University under the following license. By obtaining, using "); writer.println("# and/or copying this software and database, you agree that you have "); writer.println("# read, understood, and will comply with these terms and conditions.: "); writer.println("# "); writer.println("# Permission to use, copy, modify and distribute this software and "); writer.println("# database and its documentation for any purpose and without fee or "); writer.println("# royalty is hereby granted, provided that you agree to comply with "); writer.println("# the following copyright notice and statements, including the disclaimer, "); writer.println("# and that the same appear on ALL copies of the software, database and "); writer.println("# documentation, including modifications that you make for internal "); writer.println("# use or for distribution. "); writer.println("# "); writer.println("# WordNet 1.7 Copyright 2001 by Princeton University. All rights reserved. "); writer.println("# "); writer.println("# THIS SOFTWARE AND DATABASE IS PROVIDED \"AS IS\" AND PRINCETON "); writer.println("# UNIVERSITY MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR "); writer.println("# IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PRINCETON "); writer.println("# UNIVERSITY MAKES NO REPRESENTATIONS OR WARRANTIES OF MERCHANT- "); writer.println("# ABILITY OR FITNESS FOR ANY PARTICULAR PURPOSE OR THAT THE USE "); writer.println("# OF THE LICENSED SOFTWARE, DATABASE OR DOCUMENTATION WILL NOT "); writer.println("# INFRINGE ANY THIRD PARTY PATENTS, COPYRIGHTS, TRADEMARKS OR "); writer.println("# OTHER RIGHTS. "); writer.println("# "); writer.println("# The name of Princeton University or Princeton may not be used in"); writer.println("# advertising or publicity pertaining to distribution of the software"); writer.println("# and/or database. Title to copyright in this software, database and"); writer.println("# any associated documentation shall at all times remain with"); writer.println("# Princeton University and LICENSEE agrees to preserve same. "); for (Iterator i = s.iterator(); i.hasNext(); ) { String mwe = (String) i.next(); writer.println(mwe); } writer.close(); } catch (Exception e) { e.printStackTrace(); } } | 17,916 |
0 | @Test public void pk() throws Exception { Connection conn = s.getConnection(); conn.setAutoCommit(false); PreparedStatement ps = conn.prepareStatement("insert into t_test(t_name,t_cname,t_data,t_date,t_double) values(?,?,?,?,?)"); for (int i = 10; i < 20; ++i) { ps.setString(1, "name-" + i); ps.setString(2, "cname-" + i); ps.setBlob(3, null); ps.setTimestamp(4, new Timestamp(System.currentTimeMillis())); ps.setNull(5, java.sql.Types.DOUBLE); ps.executeUpdate(); } conn.rollback(); conn.setAutoCommit(true); ps.close(); conn.close(); } | public static void copyFile(File source, File destination) throws IOException { FileChannel srcChannel = new FileInputStream(source).getChannel(); FileChannel dstChannel = new FileOutputStream(destination).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } | 17,917 |
0 | public static String getEncryptedPwd(String password) throws NoSuchAlgorithmException, UnsupportedEncodingException { byte[] pwd = null; SecureRandom random = new SecureRandom(); byte[] salt = new byte[SALT_LENGTH]; random.nextBytes(salt); MessageDigest md = null; md = MessageDigest.getInstance("MD5"); md.update(salt); md.update(password.getBytes("UTF-8")); byte[] digest = md.digest(); pwd = new byte[digest.length + SALT_LENGTH]; System.arraycopy(salt, 0, pwd, 0, SALT_LENGTH); System.arraycopy(digest, 0, pwd, SALT_LENGTH, digest.length); return byteToHexString(pwd); } | protected synchronized AbstractBaseObject insert(AbstractBaseObject obj) throws ApplicationException { PreparedStatement preStat = null; StringBuffer sqlStat = new StringBuffer(); DmsRelationalWord tmpDmsRelationalWord = (DmsRelationalWord) ((DmsRelationalWord) obj).clone(); synchronized (dbConn) { try { Integer nextID = getNextPrimaryID(); Timestamp currTime = Utility.getCurrentTimestamp(); sqlStat.append("INSERT "); sqlStat.append("INTO DMS_RELATIONAL_WORD(ID, RECORD_STATUS, UPDATE_COUNT, CREATOR_ID, CREATE_DATE, UPDATER_ID, UPDATE_DATE, WORD, PARENT_ID, TYPE) "); sqlStat.append("VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?) "); preStat = dbConn.prepareStatement(sqlStat.toString(), ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); setPrepareStatement(preStat, 1, nextID); setPrepareStatement(preStat, 2, tmpDmsRelationalWord.getRecordStatus()); setPrepareStatement(preStat, 3, new Integer(0)); setPrepareStatement(preStat, 4, tmpDmsRelationalWord.getCreatorID()); setPrepareStatement(preStat, 5, currTime); setPrepareStatement(preStat, 6, tmpDmsRelationalWord.getUpdaterID()); setPrepareStatement(preStat, 7, currTime); if (tmpDmsRelationalWord.getWord() == null || "".equals(tmpDmsRelationalWord.getWord().trim())) { return null; } setPrepareStatement(preStat, 8, tmpDmsRelationalWord.getWord()); setPrepareStatement(preStat, 9, tmpDmsRelationalWord.getParentID()); setPrepareStatement(preStat, 10, tmpDmsRelationalWord.getType()); preStat.executeUpdate(); tmpDmsRelationalWord.setID(nextID); tmpDmsRelationalWord.setCreatorID(tmpDmsRelationalWord.getCreatorID()); tmpDmsRelationalWord.setCreateDate(currTime); tmpDmsRelationalWord.setUpdaterID(tmpDmsRelationalWord.getUpdaterID()); tmpDmsRelationalWord.setUpdateDate(currTime); tmpDmsRelationalWord.setUpdateCount(new Integer(0)); tmpDmsRelationalWord.setCreatorName(UserInfoFactory.getUserFullName(tmpDmsRelationalWord.getCreatorID())); tmpDmsRelationalWord.setUpdaterName(UserInfoFactory.getUserFullName(tmpDmsRelationalWord.getUpdaterID())); dbConn.commit(); return (tmpDmsRelationalWord); } catch (Exception e) { try { dbConn.rollback(); } catch (Exception ee) { } log.error(e, e); throw new ApplicationException(ErrorConstant.DB_INSERT_ERROR, e); } finally { try { preStat.close(); } catch (Exception ignore) { } finally { preStat = null; } } } } | 17,918 |
1 | protected static boolean copyFile(File src, File dest) { try { if (!dest.exists()) { dest.createNewFile(); } FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dest); byte[] temp = new byte[1024 * 8]; int readSize = 0; do { readSize = fis.read(temp); fos.write(temp, 0, readSize); } while (readSize == temp.length); temp = null; fis.close(); fos.flush(); fos.close(); } catch (Exception e) { return false; } return true; } | @Test public void testCopy_inputStreamToWriter_nullIn() throws Exception { ByteArrayOutputStream baout = new ByteArrayOutputStream(); OutputStream out = new YellOnFlushAndCloseOutputStreamTest(baout, true, true); Writer writer = new OutputStreamWriter(baout, "US-ASCII"); try { IOUtils.copy((InputStream) null, writer); fail(); } catch (NullPointerException ex) { } } | 17,919 |
0 | private String listaArquivo() { String arquivo = ""; String linha = ""; try { URL url = new URL(this.getCodeBase(), "./listador?dir=" + "cenarios" + "/" + user); URLConnection con = url.openConnection(); con.setUseCaches(false); InputStream in = con.getInputStream(); DataInputStream result = new DataInputStream(new BufferedInputStream(in)); while ((linha = result.readLine()) != null) { arquivo += linha + "\n"; } return arquivo; } catch (Exception e) { return null; } } | public static String BaiKe(String unknown) { String encodeurl = ""; long sTime = System.currentTimeMillis(); long eTime; try { String regEx = "\\#(.+)\\#"; String searchText = ""; Pattern p = Pattern.compile(regEx); Matcher m = p.matcher(unknown); if (m.find()) { searchText = m.group(1); } System.out.println("searchText : " + searchText); encodeurl = URLEncoder.encode(searchText, "UTF-8"); String url = "http://www.hudong.com/wiki/" + encodeurl; HttpURLConnection conn = (HttpURLConnection) (new URL(url)).openConnection(); conn.setConnectTimeout(10000); Parser parser = new Parser(conn); parser.setEncoding(parser.getEncoding()); NodeFilter filtera = new TagNameFilter("DIV"); NodeList nodes = parser.extractAllNodesThatMatch(filtera); String textInPage = ""; if (nodes != null) { for (int i = 0; i < nodes.size(); i++) { Node textnode = (Node) nodes.elementAt(i); if ("div class=\"summary\"".equals(textnode.getText())) { String temp = textnode.toPlainTextString(); textInPage += temp + "\n"; } } } String s = Replace(textInPage, searchText); eTime = System.currentTimeMillis(); String time = "搜索[" + searchText + "]用时:" + (eTime - sTime) / 1000.0 + "s"; System.out.println(s); return time + "\r\n" + s; } catch (Exception e) { e.printStackTrace(); return "大姨妈来了"; } } | 17,920 |
0 | @Override public InputStream getResourceAsStream(String path) { try { URL url = this.getResource(path); if (url == null) return null; return url.openStream(); } catch (Exception e) { log(e.getMessage(), e); return null; } } | private void pushResource(String peerId, String communityId, String resourceFilePath, List<String> attachmentFilePaths) throws IOException { String urlString = "http://" + peerId + "/upload"; HttpURLConnection uploadConnection = null; DataOutputStream connOutput = null; FileInputStream fileInput = null; String lineEnd = "\r\n"; String twoHyphens = "--"; String boundary = "232404jkg4220957934FW"; int bytesRead, bytesAvailable, bufferSize; byte[] buffer; int maxBufferSize = 1 * 1024 * 1024; try { File resourceFile = new File(resourceFilePath); if (!resourceFile.exists()) { LOG.error("JTellaAdapter: Resource file could not be found for push: " + resourceFilePath); return; } List<File> attachments = new ArrayList<File>(); for (String attachmentPath : attachmentFilePaths) { File attachFile = new File(attachmentPath); if (!attachFile.exists()) { LOG.error("JTellaAdapter: Attachment file could not be found for push: " + attachmentPath); return; } attachments.add(attachFile); } LOG.debug("JTellaAdapter: Initiating push to: " + urlString); URL url = new URL(urlString); uploadConnection = (HttpURLConnection) url.openConnection(); uploadConnection.setDoInput(true); uploadConnection.setDoOutput(true); uploadConnection.setUseCaches(false); uploadConnection.setRequestMethod("POST"); uploadConnection.setRequestProperty("Content-Type", "multipart/form-data;boundary=" + boundary); uploadConnection.setRequestProperty("Connection", "Keep-Alive"); uploadConnection.setRequestProperty("User-Agent", "UP2P"); uploadConnection.setRequestProperty("Accept", "[star]/[star]"); connOutput = new DataOutputStream(uploadConnection.getOutputStream()); connOutput.writeBytes(twoHyphens + boundary + lineEnd); connOutput.writeBytes("Content-Disposition: form-data; name=\"up2p:community\"" + lineEnd + lineEnd); connOutput.writeBytes(communityId + lineEnd); connOutput.writeBytes(twoHyphens + boundary + lineEnd); connOutput.writeBytes("Content-Disposition: form-data; name=\"up2p:pushupload\"" + lineEnd + lineEnd + "true" + lineEnd); connOutput.writeBytes(twoHyphens + boundary + lineEnd); boolean fileWriteComplete = false; boolean resourceFileWritten = false; File nextFile = null; while (!fileWriteComplete) { if (!resourceFileWritten) { nextFile = resourceFile; } else { nextFile = attachments.remove(0); } LOG.debug("JTellaAdapter: PUSHing file: " + nextFile.getAbsolutePath()); connOutput.writeBytes("Content-Disposition: form-data; name=\"up2p:filename\";" + " filename=\"" + nextFile.getName() + "\"" + lineEnd); connOutput.writeBytes(lineEnd); fileInput = new FileInputStream(nextFile); bytesAvailable = fileInput.available(); bufferSize = Math.min(bytesAvailable, maxBufferSize); buffer = new byte[bufferSize]; bytesRead = fileInput.read(buffer, 0, bufferSize); while (bytesRead > 0) { connOutput.write(buffer, 0, bufferSize); bytesAvailable = fileInput.available(); bufferSize = Math.min(bytesAvailable, maxBufferSize); bytesRead = fileInput.read(buffer, 0, bufferSize); } connOutput.writeBytes(lineEnd); if (attachments.isEmpty()) { connOutput.writeBytes(twoHyphens + boundary + twoHyphens + lineEnd); } else { connOutput.writeBytes(twoHyphens + boundary + lineEnd); } resourceFileWritten = true; if (attachments.isEmpty()) { fileWriteComplete = true; } } BufferedReader inStream = new BufferedReader(new InputStreamReader(uploadConnection.getInputStream())); while (inStream.readLine() != null) ; inStream.close(); LOG.debug("JTellaAdapter: Push upload was succesful."); } catch (MalformedURLException ex) { LOG.error("JTellaAdapter: pushResource Malformed URL: " + ex); throw new IOException("pushResource failed for URL: " + urlString); } catch (IOException ioe) { LOG.error("JTellaAdapter: pushResource IOException: " + ioe); throw new IOException("pushResource failed for URL: " + urlString); } finally { try { if (fileInput != null) { fileInput.close(); } if (connOutput != null) { connOutput.flush(); } if (connOutput != null) { connOutput.close(); } if (uploadConnection != null) { uploadConnection.disconnect(); } } catch (IOException e) { LOG.error("JTellaAdapter: pushResource failed to close connection streams."); } } } | 17,921 |
0 | @HttpAction(name = "map.saveOrUpdate", method = { HttpAction.Method.post }, responseType = "text/plain") @HttpAuthentication(method = { HttpAuthentication.Method.WSSE }) public String saveOrUpdate(FileItem file, User user, MapOriginal map) throws HttpRpcException { File tmpFile; GenericDAO<MapOriginal> mapDao = DAOFactory.createDAO(MapOriginal.class); try { assert (file != null); String jobid = null; if (file.getContentType().startsWith("image/")) { tmpFile = File.createTempFile("gmap", "img"); OutputStream out = new FileOutputStream(tmpFile); IOUtils.copy(file.getInputStream(), out); out.flush(); out.close(); map.setState(MapOriginal.MapState.UPLOAD); map.setUser(user); map.setMapPath(tmpFile.getPath()); map.setThumbnailUrl("/map/inproc.gif"); map.setMimeType(file.getContentType()); mapDao.saveOrUpdate(map); jobid = PoolFactory.getClientPool().put(map, TaskState.STATE_MO_FINISH, MapOverrideStrategy.class); } return jobid; } catch (IOException e) { logger.error(e); throw ERROR_INTERNAL; } catch (DAOException e) { logger.error(e); throw ERROR_INTERNAL; } } | public synchronized String getEncryptedPassword(String plaintext, String algorithm) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md = null; md = MessageDigest.getInstance(algorithm); md.update(plaintext.getBytes("UTF-8")); return bytesToHexString(md.digest()); } | 17,922 |
1 | public void doPreparedStatementQueryAndUpdate(Connection conn, String id) throws SQLException { try { int key = getNextKey(); String bValue = "doPreparedStatementQueryAndUpdate:" + id + ":" + testId; PreparedStatement s1; if (key >= MAX_KEY_VALUE) { key = key % MAX_KEY_VALUE; s1 = conn.prepareStatement("delete from many_threads where a = ?"); s1.setInt(1, key); s1.executeUpdate(); s1.close(); } s1 = conn.prepareStatement("insert into many_threads values (?, ?, 0)"); s1.setInt(1, key); s1.setString(2, bValue); assertEquals(1, s1.executeUpdate()); s1.close(); s1 = conn.prepareStatement("select a from many_threads where a = ?"); s1.setInt(1, key); assertEquals(key, executeQuery(s1)); s1.close(); s1 = conn.prepareStatement("update many_threads set value = a * a, b = b || ? where a = ?"); s1.setString(1, "&" + bValue); s1.setInt(2, key + 1); s1.executeUpdate(); s1.close(); if (!conn.getAutoCommit()) { conn.commit(); } } catch (SQLException e) { if (!conn.getAutoCommit()) { try { conn.rollback(); } catch (SQLException e2) { } } } } | public boolean save(Object obj) { boolean bool = false; this.result = null; if (obj == null) return bool; Connection conn = null; try { conn = ConnectUtil.getConnect(); conn.setAutoCommit(false); String sql = SqlUtil.getInsertSql(this.getCls()); PreparedStatement ps = conn.prepareStatement(sql); setPsParams(ps, obj); ps.executeUpdate(); ps.close(); conn.commit(); bool = true; } catch (Exception e) { try { conn.rollback(); } catch (SQLException e1) { } this.result = e.getMessage(); } finally { this.closeConnectWithTransaction(conn); } return bool; } | 17,923 |
1 | public void sendContent(OutputStream out, Range range, Map map, String string) throws IOException, NotAuthorizedException, BadRequestException { System.out.println("sendContent " + file); RFileInputStream in = new RFileInputStream(file); try { IOUtils.copyLarge(in, out); } finally { in.close(); } } | private void save() { int[] selection = list.getSelectionIndices(); String dir = System.getProperty("user.dir"); for (int i = 0; i < selection.length; i++) { File src = files[selection[i]]; FileDialog dialog = new FileDialog(shell, SWT.SAVE); dialog.setFilterPath(dir); dialog.setFileName(src.getName()); String destination = dialog.open(); if (destination != null) { File dest = new File(destination); try { dest.createNewFile(); FileChannel srcC = new FileInputStream(src).getChannel(); FileChannel destC = new FileOutputStream(dest).getChannel(); destC.transferFrom(srcC, 0, srcC.size()); destC.close(); srcC.close(); updateSaved(selection[i], true); files[selection[i]] = dest; } catch (FileNotFoundException e) { IVC.showError("Error!", "" + e.getMessage(), ""); } catch (IOException e) { IVC.showError("Error!", "" + e.getMessage(), ""); } } } } | 17,924 |
1 | private static String calculateMD5(String s) { try { MessageDigest m = MessageDigest.getInstance("MD5"); m.reset(); m.update(s.getBytes()); return new BigInteger(1, m.digest()).toString(16); } catch (NoSuchAlgorithmException e) { throw new UndeclaredThrowableException(e); } } | protected byte[] createFileID() { try { COSDocument cosDoc = cosGetDoc(); if (cosDoc == null) { return null; } ILocator locator = cosDoc.getLocator(); if (locator == null) { return null; } IRandomAccess ra = cosDoc.stGetDoc().getRandomAccess(); if (ra == null) { ra = new RandomAccessByteArray(StringTools.toByteArray("DummyValue")); } MessageDigest digest = MessageDigest.getInstance("MD5"); long time = System.currentTimeMillis(); digest.update(String.valueOf(time).getBytes()); digest.update(locator.getFullName().getBytes()); digest.update(String.valueOf(ra.getLength()).getBytes()); COSInfoDict infoDict = getInfoDict(); if (infoDict != null) { for (Iterator it = infoDict.cosGetDict().iterator(); it.hasNext(); ) { COSObject object = (COSObject) it.next(); digest.update(object.stringValue().getBytes()); } } return digest.digest(); } catch (Exception e) { throw new IllegalStateException(e); } } | 17,925 |
0 | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | public void serveResource(HTTPResource resource, HttpServletRequest request, HttpServletResponse response) throws java.io.IOException { Image image = (Image) resource; log.debug("Serving: " + image); URL url = image.getResourceURL(); int idx = url.toString().lastIndexOf("."); String fn = image.getId() + url.toString().substring(idx); String cd = "filename=\"" + fn + "\""; response.setContentType(image.getContentType()); log.debug("LOADING: " + url); IOUtil.copyData(response.getOutputStream(), url.openStream()); } | 17,926 |
1 | private void gzip(FileHolder fileHolder) { byte[] buffer = new byte[BUFFER_SIZE]; int bytes_read; if (fileHolder.selectedFileList.size() == 0) { return; } File destFile = new File(fileHolder.destFiles[0]); try { OutputStream outStream = new FileOutputStream(destFile); outStream = new GZIPOutputStream(outStream); File selectedFile = fileHolder.selectedFileList.get(0); super.currentObjBeingProcessed = selectedFile; this.inStream = new FileInputStream(selectedFile); while ((bytes_read = this.inStream.read(buffer)) != -1) { outStream.write(buffer, 0, bytes_read); } outStream.close(); this.inStream.close(); } catch (IOException e) { errEntry.setThrowable(e); errEntry.setAppContext("gzip()"); errEntry.setAppMessage("Error gzip'ing: " + destFile); logger.logError(errEntry); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,927 |
0 | public void handle() { FileChannel srcChannel, destChannel; String destOutFile = databaseName + ".script." + System.currentTimeMillis(); String destOutFileCompressed = databaseName + ".script." + System.currentTimeMillis() + ".gz"; if (rotateDest != null) { (new File(rotateDest)).mkdirs(); if (destOutFile.indexOf("/") != -1) { destOutFile = rotateDest + "/" + destOutFile.substring(destOutFile.lastIndexOf("/") + 1); } if (destOutFileCompressed.indexOf("/") != -1) { destOutFileCompressed = rotateDest + "/" + destOutFileCompressed.substring(destOutFileCompressed.lastIndexOf("/") + 1); } } if (rotateCompress) { try { GZIPOutputStream out = new GZIPOutputStream(new FileOutputStream(destOutFileCompressed)); FileInputStream in = new FileInputStream(databaseName + ".script"); byte buf[] = new byte[1024]; int len; while ((len = in.read(buf)) > 0) { out.write(buf, 0, len); } in.close(); out.finish(); out.close(); buf = null; in = null; out = null; Debug.debug("Rotated database file '" + databaseName + ".script' to '" + destOutFileCompressed + "'"); } catch (Exception e) { Debug.debug("Unable to rotate database file '" + databaseName + ".script': " + e); } } else { try { srcChannel = new FileInputStream(databaseName + ".script").getChannel(); } catch (IOException e) { Debug.debug("Unable to read file '" + databaseName + ".script' for database rotation."); return; } try { destChannel = new FileOutputStream(destOutFile).getChannel(); } catch (IOException e) { Debug.debug("Unable to rotate file to '" + destOutFile + "': " + e.getMessage()); return; } try { destChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); destChannel.close(); srcChannel = null; destChannel = null; } catch (IOException e) { Debug.debug("Unable to copy data for file rotation: " + e.getMessage()); return; } Debug.debug("Rotated database file '" + databaseName + ".script' to '" + destOutFile + "'"); } if (rotateDest != null) { long comparisonTime = rotateDays * (60 * 60 * 24 * 1000); long currentTime = System.currentTimeMillis(); File fileList[] = (new File(rotateDest)).listFiles(); DateFormat format1 = new SimpleDateFormat("yyyy-MM-dd"); java.util.Date date = new java.util.Date(currentTime); String archiveFile = format1.format(date).toString() + ".zip"; if (rotateArchive != null) { archiveFile = rotateArchive + "/" + archiveFile; (new File(rotateArchive)).mkdirs(); } Archive archive = new Archive(archiveFile); for (int i = 0; i < fileList.length; i++) { String currentFilename = fileList[i].getName(); long timeDifference = (currentTime - fileList[i].lastModified()); if ((rotateCompress && currentFilename.endsWith(".gz")) || (!rotateCompress && currentFilename.indexOf(".script.") != -1)) { if (rotateDest != null) { currentFilename = rotateDest + "/" + currentFilename; } if (timeDifference > comparisonTime) { archive.addFile(fileList[i].getName(), currentFilename); fileList[i].delete(); } } } archive = null; fileList = null; format1 = null; date = null; } } | private void copy(String url, File toDir) throws IOException { System.err.println("url=" + url + " dir=" + toDir); if (url.endsWith("/")) { String basename = url.substring(url.lastIndexOf("/", url.length() - 2) + 1); File directory = new File(toDir, basename); directory.mkdir(); LineNumberReader reader = new LineNumberReader(new InputStreamReader(new URL(url).openStream(), "utf-8")); String line; while ((line = reader.readLine()) != null) { System.err.println(line.replace('\t', '|')); int tab = line.lastIndexOf('\t', line.lastIndexOf('\t', line.lastIndexOf('\t') - 1) - 1); System.err.println(tab); char type = line.charAt(tab + 1); String file = line.substring(0, tab); copy(url + URIUtil.encodePath(file) + (type == 'd' ? "/" : ""), directory); } } else { String basename = url.substring(url.lastIndexOf("/") + 1); File file = new File(toDir, basename); System.err.println("copy " + url + " --> " + file); IO.copy(new URL(url).openStream(), new FileOutputStream(file)); } } | 17,928 |
1 | @Override public byte[] read(String path) throws PersistenceException { InputStream reader = null; ByteArrayOutputStream sw = new ByteArrayOutputStream(); try { reader = new FileInputStream(path); IOUtils.copy(reader, sw); } catch (Exception e) { LOGGER.error("fail to read file - " + path, e); throw new PersistenceException(e); } finally { if (reader != null) { try { reader.close(); } catch (IOException e) { LOGGER.error("fail to close reader", e); } } } return sw.toByteArray(); } | private void createSoundbank(String testSoundbankFileName) throws Exception { System.out.println("Create soundbank"); File packageDir = new File("testsoundbank"); if (packageDir.exists()) { for (File file : packageDir.listFiles()) assertTrue(file.delete()); assertTrue(packageDir.delete()); } packageDir.mkdir(); String sourceFileName = "testsoundbank/TestSoundBank.java"; File sourceFile = new File(sourceFileName); FileWriter writer = new FileWriter(sourceFile); writer.write("package testsoundbank;\n" + "public class TestSoundBank extends com.sun.media.sound.ModelAbstractOscillator { \n" + " @Override public int read(float[][] buffers, int offset, int len) throws java.io.IOException { \n" + " return 0;\n" + " }\n" + " @Override public String getVersion() {\n" + " return \"" + (soundbankRevision++) + "\";\n" + " }\n" + "}\n"); writer.close(); JavaCompiler compiler = ToolProvider.getSystemJavaCompiler(); StandardJavaFileManager fileManager = compiler.getStandardFileManager(null, null, null); fileManager.setLocation(StandardLocation.CLASS_OUTPUT, Arrays.asList(new File("."))); compiler.getTask(null, fileManager, null, null, null, fileManager.getJavaFileObjectsFromFiles(Arrays.asList(sourceFile))).call(); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(testSoundbankFileName)); ZipEntry ze = new ZipEntry("META-INF/services/javax.sound.midi.Soundbank"); zos.putNextEntry(ze); zos.write("testsoundbank.TestSoundBank".getBytes()); ze = new ZipEntry("testsoundbank/TestSoundBank.class"); zos.putNextEntry(ze); FileInputStream fis = new FileInputStream("testsoundbank/TestSoundBank.class"); int b = fis.read(); while (b != -1) { zos.write(b); b = fis.read(); } zos.close(); } | 17,929 |
1 | public void onMessage(Message message) { LOG.debug("onMessage"); DownloadMessage downloadMessage; try { downloadMessage = new DownloadMessage(message); } catch (JMSException e) { LOG.error("JMS error: " + e.getMessage(), e); return; } String caName = downloadMessage.getCaName(); boolean update = downloadMessage.isUpdate(); LOG.debug("issuer: " + caName); CertificateAuthorityEntity certificateAuthority = this.certificateAuthorityDAO.findCertificateAuthority(caName); if (null == certificateAuthority) { LOG.error("unknown certificate authority: " + caName); return; } if (!update && Status.PROCESSING != certificateAuthority.getStatus()) { LOG.debug("CA status not marked for processing"); return; } String crlUrl = certificateAuthority.getCrlUrl(); if (null == crlUrl) { LOG.warn("No CRL url for CA " + certificateAuthority.getName()); certificateAuthority.setStatus(Status.NONE); return; } NetworkConfig networkConfig = this.configurationDAO.getNetworkConfig(); HttpClient httpClient = new HttpClient(); if (null != networkConfig) { httpClient.getHostConfiguration().setProxy(networkConfig.getProxyHost(), networkConfig.getProxyPort()); } HttpClientParams httpClientParams = httpClient.getParams(); httpClientParams.setParameter("http.socket.timeout", new Integer(1000 * 20)); LOG.debug("downloading CRL from: " + crlUrl); GetMethod getMethod = new GetMethod(crlUrl); getMethod.addRequestHeader("User-Agent", "jTrust CRL Client"); int statusCode; try { statusCode = httpClient.executeMethod(getMethod); } catch (Exception e) { downloadFailed(caName, crlUrl); throw new RuntimeException(); } if (HttpURLConnection.HTTP_OK != statusCode) { LOG.debug("HTTP status code: " + statusCode); downloadFailed(caName, crlUrl); throw new RuntimeException(); } String crlFilePath; File crlFile = null; try { crlFile = File.createTempFile("crl-", ".der"); InputStream crlInputStream = getMethod.getResponseBodyAsStream(); OutputStream crlOutputStream = new FileOutputStream(crlFile); IOUtils.copy(crlInputStream, crlOutputStream); IOUtils.closeQuietly(crlInputStream); IOUtils.closeQuietly(crlOutputStream); crlFilePath = crlFile.getAbsolutePath(); LOG.debug("temp CRL file: " + crlFilePath); } catch (IOException e) { downloadFailed(caName, crlUrl); if (null != crlFile) { crlFile.delete(); } throw new RuntimeException(e); } try { this.notificationService.notifyHarvester(caName, crlFilePath, update); } catch (JMSException e) { crlFile.delete(); throw new RuntimeException(e); } } | private static void copyContent(final File srcFile, final File dstFile, final boolean gzipContent) throws IOException { final File dstFolder = dstFile.getParentFile(); dstFolder.mkdirs(); if (!dstFolder.exists()) { throw new RuntimeException("Unable to create the folder " + dstFolder.getAbsolutePath()); } final InputStream in = new FileInputStream(srcFile); OutputStream out = new FileOutputStream(dstFile); if (gzipContent) { out = new GZIPOutputStream(out); } try { final byte[] buffer = new byte[1024]; int read; while ((read = in.read(buffer)) != -1) { out.write(buffer, 0, read); } } finally { in.close(); out.close(); } } | 17,930 |
0 | public static String rename_file(String sessionid, String key, String newFileName) { String jsonstring = ""; try { Log.d("current running function name:", "rename_file"); HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost("https://mt0-app.cloud.cm/rpc/json"); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(2); nameValuePairs.add(new BasicNameValuePair("c", "Storage")); nameValuePairs.add(new BasicNameValuePair("m", "rename_file")); nameValuePairs.add(new BasicNameValuePair("new_name", newFileName)); nameValuePairs.add(new BasicNameValuePair("key", key)); httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); httppost.setHeader("Cookie", "PHPSESSID=" + sessionid); HttpResponse response = httpclient.execute(httppost); jsonstring = EntityUtils.toString(response.getEntity()); Log.d("jsonStringReturned:", jsonstring); return jsonstring; } catch (Exception e) { e.printStackTrace(); } return jsonstring; } | private void handleServerIntroduction(DataPacket serverPacket) { DataPacketIterator iter = serverPacket.getDataPacketIterator(); String version = iter.nextString(); int serverReportedUDPPort = iter.nextUByte2(); _authKey = iter.nextUByte4(); _introKey = iter.nextUByte4(); _clientKey = makeClientKey(_authKey, _introKey); String passwordKey = iter.nextString(); _logger.log(Level.INFO, "Connection to version " + version + " with udp port " + serverReportedUDPPort); DataPacket packet = null; if (initUDPSocketAndStartPacketReader(_tcpSocket.getInetAddress(), serverReportedUDPPort)) { ParameterBuilder builder = new ParameterBuilder(); builder.appendUByte2(_udpSocket.getLocalPort()); builder.appendString(_user); MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException ignore) { } md5.update(_serverKey.getBytes()); md5.update(passwordKey.getBytes()); md5.update(_password.getBytes()); for (byte b : md5.digest()) { builder.appendByte(b); } packet = new DataPacketImpl(ClientCommandConstants.INTRODUCTION, builder.toParameter()); } else { packet = new DataPacketImpl(ClientCommandConstants.TCP_ONLY); } sendTCPPacket(packet); } | 17,931 |
1 | private static void copy(String fromFileName, String toFileName) throws IOException { File fromFile = new File(fromFileName); File toFile = new File(toFileName); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); System.out.print("Overwrite existing file " + toFile.getName() + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: " + "existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | @Override public String getPath() { InputStream in = null; OutputStream out = null; File file = null; try { file = File.createTempFile("java-storage_" + RandomStringUtils.randomAlphanumeric(32), ".tmp"); file.deleteOnExit(); out = new FileOutputStream(file); in = openStream(); IOUtils.copy(in, out); } catch (IOException e) { throw new RuntimeException(); } finally { IOUtils.closeQuietly(in); IOUtils.closeQuietly(out); } if (file != null && file.exists()) { return file.getPath(); } return null; } | 17,932 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private static File copyFileTo(File file, File directory) throws IOException { File newFile = new File(directory, file.getName()); FileInputStream fis = null; FileOutputStream fos = null; try { fis = new FileInputStream(file); fos = new FileOutputStream(newFile); byte buff[] = new byte[1024]; int val; while ((val = fis.read(buff)) > 0) fos.write(buff, 0, val); } finally { if (fis != null) fis.close(); if (fos != null) fos.close(); } return newFile; } | 17,933 |
1 | private String getMD5(String data) { try { MessageDigest md5Algorithm = MessageDigest.getInstance("MD5"); md5Algorithm.update(data.getBytes(), 0, data.length()); byte[] digest = md5Algorithm.digest(); StringBuffer hexString = new StringBuffer(); String hexDigit = null; for (int i = 0; i < digest.length; i++) { hexDigit = Integer.toHexString(0xFF & digest[i]); if (hexDigit.length() < 2) { hexDigit = "0" + hexDigit; } hexString.append(hexDigit); } return hexString.toString(); } catch (NoSuchAlgorithmException ne) { return data; } } | public static String encryptPasswd(String pass) { try { if (pass == null || pass.length() == 0) return pass; MessageDigest sha = MessageDigest.getInstance("SHA-1"); sha.reset(); sha.update(pass.getBytes("UTF-8")); return Base64OutputStream.encode(sha.digest()); } catch (Throwable t) { throw new SystemException(t); } } | 17,934 |
1 | public BufferedImage extract() throws DjatokaException { boolean useRegion = false; int left = 0; int top = 0; int width = 50; int height = 50; boolean useleftDouble = false; Double leftDouble = 0.0; boolean usetopDouble = false; Double topDouble = 0.0; boolean usewidthDouble = false; Double widthDouble = 0.0; boolean useheightDouble = false; Double heightDouble = 0.0; if (params.getRegion() != null) { StringTokenizer st = new StringTokenizer(params.getRegion(), "{},"); String token; if ((token = st.nextToken()).contains(".")) { topDouble = Double.parseDouble(token); usetopDouble = true; } else top = Integer.parseInt(token); if ((token = st.nextToken()).contains(".")) { leftDouble = Double.parseDouble(token); useleftDouble = true; } else left = Integer.parseInt(token); if ((token = st.nextToken()).contains(".")) { heightDouble = Double.parseDouble(token); useheightDouble = true; } else height = Integer.parseInt(token); if ((token = st.nextToken()).contains(".")) { widthDouble = Double.parseDouble(token); usewidthDouble = true; } else width = Integer.parseInt(token); useRegion = true; } try { if (is != null) { File f = File.createTempFile("tmp", ".jp2"); f.deleteOnExit(); FileOutputStream fos = new FileOutputStream(f); sourceFile = f.getAbsolutePath(); IOUtils.copyStream(is, fos); is.close(); fos.close(); } } catch (IOException e) { throw new DjatokaException(e); } try { Jp2_source inputSource = new Jp2_source(); Kdu_compressed_source input = null; Jp2_family_src jp2_family_in = new Jp2_family_src(); Jp2_locator loc = new Jp2_locator(); jp2_family_in.Open(sourceFile, true); inputSource.Open(jp2_family_in, loc); inputSource.Read_header(); input = inputSource; Kdu_codestream codestream = new Kdu_codestream(); codestream.Create(input); Kdu_channel_mapping channels = new Kdu_channel_mapping(); if (inputSource.Exists()) channels.Configure(inputSource, false); else channels.Configure(codestream); int ref_component = channels.Get_source_component(0); Kdu_coords ref_expansion = getReferenceExpansion(ref_component, channels, codestream); Kdu_dims image_dims = new Kdu_dims(); codestream.Get_dims(ref_component, image_dims); Kdu_coords imageSize = image_dims.Access_size(); Kdu_coords imagePosition = image_dims.Access_pos(); if (useleftDouble) left = imagePosition.Get_x() + (int) Math.round(leftDouble * imageSize.Get_x()); if (usetopDouble) top = imagePosition.Get_y() + (int) Math.round(topDouble * imageSize.Get_y()); if (useheightDouble) height = (int) Math.round(heightDouble * imageSize.Get_y()); if (usewidthDouble) width = (int) Math.round(widthDouble * imageSize.Get_x()); if (useRegion) { imageSize.Set_x(width); imageSize.Set_y(height); imagePosition.Set_x(left); imagePosition.Set_y(top); } int reduce = 1 << params.getLevelReductionFactor(); imageSize.Set_x(imageSize.Get_x() * ref_expansion.Get_x()); imageSize.Set_y(imageSize.Get_y() * ref_expansion.Get_y()); imagePosition.Set_x(imagePosition.Get_x() * ref_expansion.Get_x() / reduce - ((ref_expansion.Get_x() / reduce - 1) / 2)); imagePosition.Set_y(imagePosition.Get_y() * ref_expansion.Get_y() / reduce - ((ref_expansion.Get_y() / reduce - 1) / 2)); Kdu_dims view_dims = new Kdu_dims(); view_dims.Assign(image_dims); view_dims.Access_size().Set_x(imageSize.Get_x()); view_dims.Access_size().Set_y(imageSize.Get_y()); int region_buf_size = imageSize.Get_x() * imageSize.Get_y(); int[] region_buf = new int[region_buf_size]; Kdu_region_decompressor decompressor = new Kdu_region_decompressor(); decompressor.Start(codestream, channels, -1, params.getLevelReductionFactor(), 16384, image_dims, ref_expansion, new Kdu_coords(1, 1), false, Kdu_global.KDU_WANT_OUTPUT_COMPONENTS); Kdu_dims new_region = new Kdu_dims(); Kdu_dims incomplete_region = new Kdu_dims(); Kdu_coords viewSize = view_dims.Access_size(); incomplete_region.Assign(image_dims); int[] imgBuffer = new int[viewSize.Get_x() * viewSize.Get_y()]; int[] kduBuffer = null; while (decompressor.Process(region_buf, image_dims.Access_pos(), 0, 0, region_buf_size, incomplete_region, new_region)) { Kdu_coords newOffset = new_region.Access_pos(); Kdu_coords newSize = new_region.Access_size(); newOffset.Subtract(view_dims.Access_pos()); kduBuffer = region_buf; int imgBuffereIdx = newOffset.Get_x() + newOffset.Get_y() * viewSize.Get_x(); int kduBufferIdx = 0; int xDiff = viewSize.Get_x() - newSize.Get_x(); for (int j = 0; j < newSize.Get_y(); j++, imgBuffereIdx += xDiff) { for (int i = 0; i < newSize.Get_x(); i++) { imgBuffer[imgBuffereIdx++] = kduBuffer[kduBufferIdx++]; } } } BufferedImage image = new BufferedImage(imageSize.Get_x(), imageSize.Get_y(), BufferedImage.TYPE_INT_RGB); image.setRGB(0, 0, viewSize.Get_x(), viewSize.Get_y(), imgBuffer, 0, viewSize.Get_x()); if (params.getRotationDegree() > 0) { image = ImageProcessingUtils.rotate(image, params.getRotationDegree()); } decompressor.Native_destroy(); channels.Native_destroy(); if (codestream.Exists()) codestream.Destroy(); inputSource.Native_destroy(); input.Native_destroy(); jp2_family_in.Native_destroy(); return image; } catch (KduException e) { e.printStackTrace(); throw new DjatokaException(e); } catch (Exception e) { e.printStackTrace(); throw new DjatokaException(e); } } | public static void copyFile(File in, File out) throws IOException { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); try { sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); } finally { sourceChannel.close(); destinationChannel.close(); } } | 17,935 |
1 | protected boolean loadJarLibrary(final String jarLib) { final String tempLib = System.getProperty("java.io.tmpdir") + File.separator + jarLib; boolean copied = IOUtils.copyFile(jarLib, tempLib); if (!copied) { return false; } System.load(tempLib); return true; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 17,936 |
1 | public boolean renameTo(File dest) throws IOException { if (dest == null) { throw new NullPointerException("dest"); } if (!file.renameTo(dest)) { FileInputStream inputStream = new FileInputStream(file); FileOutputStream outputStream = new FileOutputStream(dest); FileChannel in = inputStream.getChannel(); FileChannel out = outputStream.getChannel(); long destsize = in.transferTo(0, size, out); in.close(); out.close(); if (destsize == size) { file.delete(); file = dest; isRenamed = true; return true; } else { dest.delete(); return false; } } file = dest; isRenamed = true; return true; } | public static boolean copy(File source, File dest) { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { e.printStackTrace(); return false; } return true; } | 17,937 |
1 | public static void copyFile(File src, File dst) throws IOException { FileChannel sourceChannel = new FileInputStream(src).getChannel(); FileChannel destinationChannel = new FileOutputStream(dst).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | private void outputSignedOpenDocument(byte[] signatureData) throws IOException { LOG.debug("output signed open document"); OutputStream signedOdfOutputStream = getSignedOpenDocumentOutputStream(); if (null == signedOdfOutputStream) { throw new NullPointerException("signedOpenDocumentOutputStream is null"); } ZipOutputStream zipOutputStream = new ZipOutputStream(signedOdfOutputStream); ZipInputStream zipInputStream = new ZipInputStream(this.getOpenDocumentURL().openStream()); ZipEntry zipEntry; while (null != (zipEntry = zipInputStream.getNextEntry())) { if (!zipEntry.getName().equals(ODFUtil.SIGNATURE_FILE)) { zipOutputStream.putNextEntry(zipEntry); IOUtils.copy(zipInputStream, zipOutputStream); } } zipInputStream.close(); zipEntry = new ZipEntry(ODFUtil.SIGNATURE_FILE); zipOutputStream.putNextEntry(zipEntry); IOUtils.write(signatureData, zipOutputStream); zipOutputStream.close(); } | 17,938 |
0 | public HTTPResponse makeRequest(BasicHttpRequest request) throws IOException { try { if (!conn.isOpen()) { logger.warn(ApacheHTTP.class, "Creating socket"); Socket socket = getSocket(host.getHostName(), host.getPort(), ssl, true); conn.bind(socket, params); } HttpContext context = new BasicHttpContext(null); context.setAttribute(ExecutionContext.HTTP_CONNECTION, conn); context.setAttribute(ExecutionContext.HTTP_TARGET_HOST, host); context.setAttribute(ExecutionContext.HTTP_REQUEST, request); request.setParams(params); httpexecutor.preProcess(request, httpproc, context); HttpResponse response = httpexecutor.execute(request, conn, context); httpexecutor.postProcess(response, httpproc, context); if (!connStrategy.keepAlive(response, context)) keepAlive = false; int statusCode = response.getStatusLine().getStatusCode(); HttpEntity resp = response.getEntity(); if (statusCode >= 400) { HTTPEntityInfo info = new HTTPEntityInfo((int) resp.getContentLength(), "", resp.getContentType().getValue()); byte[] bytes = IOUtil.toByteArray(resp.getContent()); throw new HTTPErrorResponse(response.getStatusLine().getReasonPhrase(), statusCode + "", bytes, info); } else { Header lastmodHeader = response.getLastHeader("last-modified"); String lastmod = lastmodHeader == null ? "" : lastmodHeader.getValue(); Header contentType = resp.getContentType(); HTTPEntityInfo info = new HTTPEntityInfo((int) resp.getContentLength(), lastmod, contentType == null ? null : contentType.getValue()); return new HTTPResponse(info, resp.getContent()); } } catch (HttpException he) { throw new IOException(he); } } | public String fetchDataDailyByStockId(String StockId, String market) throws IOException { URL url = new URL(urlDailyStockPrice.replace("{0}", StockId + "." + market)); URLConnection con = url.openConnection(); con.setConnectTimeout(20000); InputStream is = con.getInputStream(); byte[] bs = new byte[1024]; int len; OutputStream os = new FileOutputStream(dailyStockPriceList, true); while ((len = is.read(bs)) != -1) { os.write(bs, 0, len); } os.flush(); os.close(); is.close(); con = null; url = null; return null; } | 17,939 |
1 | public JSONObject getTargetGraph(HttpSession session, JSONObject json) throws JSONException { StringBuffer out = new StringBuffer(); Graph tgt = null; MappingManager manager = (MappingManager) session.getAttribute(RuncibleConstants.MAPPING_MANAGER.key()); try { tgt = manager.getTargetGraph(); if (tgt != null) { FlexGraphViewFactory factory = new FlexGraphViewFactory(); factory.setColorScheme(ColorSchemes.ORANGES); factory.visit(tgt); GraphView view = factory.getGraphView(); GraphViewRenderer renderer = new FlexGraphViewRenderer(); renderer.setGraphView(view); InputStream xmlStream = renderer.renderGraphView(); StringWriter writer = new StringWriter(); IOUtils.copy(xmlStream, writer); writer.close(); System.out.println(writer.toString()); out.append(writer.toString()); } else { out.append("No target graph loaded."); } } catch (Exception e) { return JSONUtils.SimpleJSONError("Cannot load target graph: " + e.getMessage()); } return JSONUtils.SimpleJSONResponse(out.toString()); } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 17,940 |
0 | public static boolean insert(final Cargo cargo) { int result = 0; final Connection c = DBConnection.getConnection(); PreparedStatement pst = null; if (c == null) { return false; } try { c.setAutoCommit(false); final String sql = "insert into cargo (nome) values (?)"; pst = c.prepareStatement(sql); pst.setString(1, cargo.getNome()); result = pst.executeUpdate(); c.commit(); } catch (final SQLException e) { try { c.rollback(); } catch (final SQLException e1) { e1.printStackTrace(); } System.out.println("[CargoDAO.insert] Erro ao inserir -> " + e.getMessage()); } finally { DBConnection.closePreparedStatement(pst); DBConnection.closeConnection(c); } if (result > 0) { return true; } else { return false; } } | public InputStream loadDriver(String id) throws IOException { Hashtable drivers = loadDriverDB(); DriverInfo di = (DriverInfo) drivers.get(id); InputStream stream = null; if (di == null) { log.warn("No id" + id); throw new IOException("No driver id '" + id + "'"); } try { String strURL = di.url; if (strURL.indexOf(":") == -1) { strURL = jarbase + strURL; } URL url = new URL(strURL); stream = url.openStream(); } catch (MalformedURLException e) { log.error("bad URL for in " + di, e); throw new IOException("Bad driver URL " + e); } catch (IOException e) { log.error("can't connect to URL in " + di, e); throw e; } return stream; } | 17,941 |
0 | private byte[] _generate() throws NoSuchAlgorithmException { if (host == null) { try { seed = InetAddress.getLocalHost().toString(); } catch (UnknownHostException e) { seed = "localhost/127.0.0.1"; } catch (SecurityException e) { seed = "localhost/127.0.0.1"; } host = seed; } else { seed = host; } seed = seed + new Date().toString(); seed = seed + Long.toString(rnd.nextLong()); md = MessageDigest.getInstance(algorithm); md.update(seed.getBytes()); return md.digest(); } | private static FTPClient getFtpClient(String ftpHost, String ftpUsername, String ftpPassword) throws SocketException, IOException { FTPClient ftp = new FTPClient(); ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out))); ftp.connect(ftpHost); int reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); return null; } if (!ftp.login(ftpUsername, ftpPassword)) { return null; } ftp.setFileType(FTP.BINARY_FILE_TYPE); ftp.enterLocalPassiveMode(); return ftp; } | 17,942 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | boolean createSessionArchive(String archiveFilename) { byte[] buffer = new byte[1024]; try { ZipOutputStream archive = new ZipOutputStream(new FileOutputStream(archiveFilename)); for (mAnnotationsCursor.moveToFirst(); !mAnnotationsCursor.isAfterLast(); mAnnotationsCursor.moveToNext()) { FileInputStream in = new FileInputStream(mAnnotationsCursor.getString(ANNOTATIONS_FILE_NAME)); archive.putNextEntry(new ZipEntry("audio" + (mAnnotationsCursor.getPosition() + 1) + ".3gpp")); int length; while ((length = in.read(buffer)) > 0) archive.write(buffer, 0, length); archive.closeEntry(); in.close(); } archive.close(); } catch (IOException e) { Toast.makeText(mActivity, mActivity.getString(R.string.error_zip) + " " + e.getMessage(), Toast.LENGTH_SHORT).show(); return false; } return true; } | 17,943 |
1 | public static String md5hash(String input) { try { MessageDigest sha1Digest = MessageDigest.getInstance("MD5"); sha1Digest.update(input.getBytes()); return byteArrayToString(sha1Digest.digest()); } catch (Exception e) { logger.error(e.getMessage(), e); } return ""; } | public static String getDigest(String seed, byte[] code) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(seed.getBytes("UTF-8")); byte[] passwordMD5Byte = md.digest(code); StringBuffer sb = new StringBuffer(); for (int i = 0; i < passwordMD5Byte.length; i++) sb.append(Integer.toHexString(passwordMD5Byte[i] & 0XFF)); return sb.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); log.error(e); return null; } catch (UnsupportedEncodingException e) { e.printStackTrace(); log.error(e); return null; } } | 17,944 |
1 | public ResourceMigratorBuilder createResourceMigratorBuilder(NotificationReporter reporter) { return new ResourceMigratorBuilder() { public ResourceMigrator getCompletedResourceMigrator() { return new ResourceMigrator() { public void migrate(InputMetadata meta, InputStream inputStream, OutputCreator outputCreator) throws IOException, ResourceMigrationException { OutputStream outputStream = outputCreator.createOutputStream(); IOUtils.copy(inputStream, outputStream); } }; } public void setTarget(Version version) { } public void startType(String typeName) { } public void setRegexpPathRecogniser(String re) { } public void setCustomPathRecogniser(PathRecogniser pathRecogniser) { } public void addRegexpContentRecogniser(Version version, String re) { } public void addCustomContentRecogniser(Version version, ContentRecogniser contentRecogniser) { } public XSLStreamMigratorBuilder createXSLStreamMigratorBuilder() { return null; } public void addStep(Version inputVersion, Version outputVersion, StreamMigrator streamMigrator) { } public void endType() { } }; } | public void run() { XmlFilesFilter filter = new XmlFilesFilter(); String pathTemp = Settings.get("vo_store.databaseMetaCollection"); String sectionName = pathTemp.substring(1, pathTemp.indexOf("/", 2)); String templateName = VOAccess.getElementByName(settingsDB, "TEMPLATE", sectionName); String schemaName = VOAccess.getElementByName(settingsDB, "SCHEMA", sectionName); byte[] buf = new byte[1024]; Hashtable templateElements = null; try { URL xmlTemplateUrl = new URL(httpURI + settingsDB + "/" + templateName); URL getDocPathsAndValuesXslUrl = new URL(httpURI + settingsDB + "/" + "getDocPathsValuesAndDisplays.xsl"); org.w3c.dom.Document curTemplateXml = VOAccess.readDocument(xmlTemplateUrl); DOMResult templateResult = new DOMResult(); InputStream tempInput = getDocPathsAndValuesXslUrl.openStream(); javax.xml.transform.sax.SAXSource tempXslSource = new javax.xml.transform.sax.SAXSource(new org.xml.sax.InputSource(tempInput)); Transformer trans = TransformerFactory.newInstance().newTransformer(tempXslSource); trans.setParameter("schemaUrl", httpURI + settingsDB + "/" + schemaName); trans.transform(new javax.xml.transform.dom.DOMSource(curTemplateXml), templateResult); tempInput.close(); templateElements = VOAccess.displaysToHashtable(templateResult); ((CollectionManagementService) CollectionsManager.getService(xmldbURI + rootDB, false, "CollectionManager")).createCollection(rootDB + pathTemp); } catch (Exception ex) { logger.error("Error parsing input document", ex); ex.printStackTrace(); } while (true) { File[] fileList = sourceMetaFilesDir.listFiles(filter); for (int i = 0; i < Math.min(fileList.length, 500); i++) { File newFile = fileList[i]; try { Document metaDoc = build.build(newFile); Element metaElm = metaDoc.getRootElement(); String dataFileName = metaElm.getChildText("Content"), previewFileName = metaElm.getChildText("Preview"); String objId = VOAccess.getUniqueId(); metaElm.getChild("Content").setText("videostore?type=doc&objId=" + objId); metaElm.getChild("Preview").setText("videostore?type=preview&objId=" + objId); boolean found = false; for (Iterator it = sourceDataFilesDirs.iterator(); it.hasNext() && !found; ) { String sourceDataFilesDir = (String) it.next(); File dataInput = new File(sourceDataFilesDir + "/" + dataFileName); if (dataInput.exists()) { found = true; BufferedInputStream inp = new BufferedInputStream(new FileInputStream(dataInput)); FileOutputStream outp = new FileOutputStream(new File(targetDataFilesDirs.get(curDirWriteTo) + "/" + objId + ".dat")); int read = inp.read(buf, 0, buf.length); while (read > 0) { outp.write(buf, 0, read); read = inp.read(buf, 0, buf.length); } inp.close(); outp.flush(); outp.close(); dataInput = new File(sourceDataFilesDir + "/" + previewFileName); inp = new BufferedInputStream(new FileInputStream(dataInput)); outp = new FileOutputStream(new File(targetDataFilesDirs.get(curDirWriteTo) + "/" + objId + ".jpg")); read = inp.read(buf, 0, buf.length); while (read > 0) { outp.write(buf, 0, read); read = inp.read(buf, 0, buf.length); } inp.close(); outp.flush(); outp.close(); curDirWriteTo++; if (curDirWriteTo >= targetDataFilesDirs.size()) { curDirWriteTo = 0; } } } if (!found) { newFile.renameTo(new File(newFile.getAbsolutePath() + ".not_found")); } else { String title = getValueByPath((String) templateElements.get("title"), metaDoc.getRootElement()); String description = getValueByPath((String) templateElements.get("description"), metaDoc.getRootElement()); String onlink = ""; if (null != templateElements.get("onlink")) { onlink = getValueByPath((String) templateElements.get("onlink"), metaDoc.getRootElement()); } String ncover = ""; if (null != templateElements.get("ncover")) { ncover = getValueByPath((String) templateElements.get("ncover"), metaDoc.getRootElement()); } String wcover = ""; if (null != templateElements.get("wcover")) { wcover = getValueByPath((String) templateElements.get("wcover"), metaDoc.getRootElement()); } String ecover = ""; if (null != templateElements.get("ecover")) { ecover = getValueByPath((String) templateElements.get("ecover"), metaDoc.getRootElement()); } String scover = ""; if (null != templateElements.get("scover")) { scover = getValueByPath((String) templateElements.get("scover"), metaDoc.getRootElement()); } String datefrom = ""; if (null != templateElements.get("datefrom")) { datefrom = getValueByPath((String) templateElements.get("datefrom"), metaDoc.getRootElement()); } String dateto = ""; if (null != templateElements.get("dateto")) { dateto = getValueByPath((String) templateElements.get("dateto"), metaDoc.getRootElement()); } String previewimg = ""; if (null != templateElements.get("previewimg")) { previewimg = getValueByPath((String) templateElements.get("previewimg"), metaDoc.getRootElement()); } String discRestr = "false"; String votingRestr = "false"; datefrom = VOAccess.parseDate(datefrom, "yyyy-MM-dd'T'HH:mm:ss", VO.defaultTimeFormat.toPattern()); dateto = VOAccess.parseDate(datefrom, "yyyy-MM-dd'T'HH:mm:ss", VO.defaultTimeFormat.toPattern()); Hashtable discussionFields = new Hashtable(); discussionFields.put("OBJECT_ID", objId); discussionFields.put("AUTHOR_ID", "auto"); discussionFields.put("AUTHOR_NAME", "auto"); discussionFields.put("OBJECT_SECTION", sectionName); discussionFields.put("OBJECT_PATH", pathTemp); discussionFields.put("FILE_PATH", ""); discussionFields.put("TITLE", title); discussionFields.put("DESCRIPTION", description); discussionFields.put("ONLINK", onlink); discussionFields.put("NCOVER", ncover); discussionFields.put("ECOVER", ecover); discussionFields.put("SCOVER", scover); discussionFields.put("WCOVER", wcover); discussionFields.put("PERIOD_START", datefrom); discussionFields.put("PERIOD_END", dateto); discussionFields.put("PREVIEW_IMG", previewimg); discussionFields.put("DISCUSSRESTRICTION", discRestr); discussionFields.put("VOTINGRESTRICTION", votingRestr); VOAccess.createDiscussionFile(discussionFields); VOAccess.updateLastItem(objId, sectionName); Collection col = CollectionsManager.getCollection(rootDB + pathTemp, true); XMLResource document = (XMLResource) col.createResource(objId + ".xml", XMLResource.RESOURCE_TYPE); document.setContent(outXml.outputString(metaElm)); col.storeResource(document); Indexer.index(objId); newFile.delete(); } } catch (Exception ex) { logger.error("Error parsing input document", ex); ex.printStackTrace(); newFile.renameTo(new File(newFile.getAbsolutePath() + ".bad")); } } try { this.sleep(600000); } catch (InterruptedException ex1) { ex1.printStackTrace(); } } } | 17,945 |
0 | public static void updateTableData(Connection dest, TableMetaData tableMetaData) throws Exception { PreparedStatement ps = null; try { dest.setAutoCommit(false); String sql = "UPDATE " + tableMetaData.getSchema() + "." + tableMetaData.getTableName() + " SET "; for (String columnName : tableMetaData.getColumnsNames()) { sql += columnName + " = ? ,"; } sql = sql.substring(0, sql.length() - 1); sql += " WHERE "; for (String pkColumnName : tableMetaData.getPkColumns()) { sql += pkColumnName + " = ? AND "; } sql = sql.substring(0, sql.length() - 4); ps = dest.prepareStatement(sql); for (Row r : tableMetaData.getData()) { int param = 1; for (String columnName : tableMetaData.getColumnsNames()) { if (dest instanceof OracleConnection) { if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("BLOB")) { BLOB blob = new BLOB((OracleConnection) dest, (byte[]) r.getRowData().get(columnName)); ((OraclePreparedStatement) ps).setBLOB(param, blob); } else if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("CLOB")) { ((OraclePreparedStatement) ps).setStringForClob(param, (String) r.getRowData().get(columnName)); } else if (tableMetaData.getColumnsTypes().get(columnName).equalsIgnoreCase("LONG")) { ps.setBytes(param, (byte[]) r.getRowData().get(columnName)); } } else { ps.setObject(param, r.getRowData().get(columnName)); } param++; } for (String pkColumnName : tableMetaData.getPkColumns()) { ps.setObject(param, r.getRowData().get(pkColumnName)); param++; } if (ps.executeUpdate() != 1) { dest.rollback(); throw new Exception(); } ps.clearParameters(); } dest.commit(); dest.setAutoCommit(true); } finally { if (ps != null) ps.close(); } } | public static void copyFile(File file, String pathExport) throws IOException { File out = new File(pathExport); FileChannel sourceChannel = new FileInputStream(file).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | 17,946 |
1 | public static void unzip(File sourceZipFile, File unzipDestinationDirectory, FileFilter filter) throws IOException { unzipDestinationDirectory.mkdirs(); if (!unzipDestinationDirectory.exists()) { throw new IOException("Unable to create destination directory: " + unzipDestinationDirectory); } ZipFile zipFile; zipFile = new ZipFile(sourceZipFile, ZipFile.OPEN_READ); Enumeration<? extends ZipEntry> zipFileEntries = zipFile.entries(); while (zipFileEntries.hasMoreElements()) { ZipEntry entry = (ZipEntry) zipFileEntries.nextElement(); if (!entry.isDirectory()) { String currentEntry = entry.getName(); File destFile = new File(unzipDestinationDirectory, currentEntry); if (filter == null || filter.accept(destFile)) { File destinationParent = destFile.getParentFile(); destinationParent.mkdirs(); BufferedInputStream is = new BufferedInputStream(zipFile.getInputStream(entry)); FileOutputStream fos = new FileOutputStream(destFile); IOUtils.copyLarge(is, fos); fos.flush(); IOUtils.closeQuietly(fos); } } } zipFile.close(); } | public void getZipFiles(String filename) { try { String destinationname = "c:\\mods\\peu\\"; byte[] buf = new byte[1024]; ZipInputStream zipinputstream = null; ZipEntry zipentry; zipinputstream = new ZipInputStream(new FileInputStream(filename)); zipentry = zipinputstream.getNextEntry(); while (zipentry != null) { String entryName = zipentry.getName(); System.out.println("entryname " + entryName); int n; FileOutputStream fileoutputstream; File newFile = new File(entryName); String directory = newFile.getParent(); if (directory == null) { if (newFile.isDirectory()) break; } fileoutputstream = new FileOutputStream(destinationname + entryName); while ((n = zipinputstream.read(buf, 0, 1024)) > -1) fileoutputstream.write(buf, 0, n); fileoutputstream.close(); zipinputstream.closeEntry(); zipentry = zipinputstream.getNextEntry(); } zipinputstream.close(); } catch (Exception e) { e.printStackTrace(); } } | 17,947 |
1 | private byte[] digestFile(File file, MessageDigest digest) throws IOException { DigestInputStream in = new DigestInputStream(new FileInputStream(file), digest); IOUtils.copy(in, new NullOutputStream()); in.close(); return in.getMessageDigest().digest(); } | public static void main(String[] args) throws IOException { long start = System.currentTimeMillis(); FileResourceManager frm = CommonsTransactionContext.configure(new File("C:/tmp")); try { frm.start(); } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } FileInputStream is = new FileInputStream("C:/Alfresco/WCM_Eval_Guide2.0.pdf"); CommonsTransactionOutputStream os = new CommonsTransactionOutputStream(new Ownerr()); IOUtils.copy(is, os); IOUtils.closeQuietly(is); IOUtils.closeQuietly(os); try { frm.stop(FileResourceManager.SHUTDOWN_MODE_NORMAL); } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } System.out.println(System.currentTimeMillis() - start); } | 17,948 |
0 | protected String connectPost(String urlString, String parameter) { String response = null; try { URL url = new URL(urlString); HttpsURLConnection connection = (HttpsURLConnection) url.openConnection(); connection.setDoOutput(true); connection.setUseCaches(false); connection.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); log.fine(connection.getURL().toString()); DataOutputStream out = new DataOutputStream(connection.getOutputStream()); out.write(parameter.getBytes()); out.flush(); out.close(); BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream())); response = in.readLine(); in.close(); log.finest(response); } catch (Exception e) { log.log(Level.SEVERE, urlString, e); } return response; } | public Object process(Atom oAtm) throws IOException { File oFile; FileReader oFileRead; String sPathHTML; char cBuffer[]; Object oReplaced; final String sSep = System.getProperty("file.separator"); if (DebugFile.trace) { DebugFile.writeln("Begin FileDumper.process([Job:" + getStringNull(DB.gu_job, "") + ", Atom:" + String.valueOf(oAtm.getInt(DB.pg_atom)) + "])"); DebugFile.incIdent(); } if (bHasReplacements) { sPathHTML = getProperty("workareasput"); if (!sPathHTML.endsWith(sSep)) sPathHTML += sSep; sPathHTML += getParameter("gu_workarea") + sSep + "apps" + sSep + "Mailwire" + sSep + "html" + sSep + getParameter("gu_pageset") + sSep; sPathHTML += getParameter("nm_pageset").replace(' ', '_') + ".html"; if (DebugFile.trace) DebugFile.writeln("PathHTML = " + sPathHTML); oReplaced = oReplacer.replace(sPathHTML, oAtm.getItemMap()); bHasReplacements = (oReplacer.lastReplacements() > 0); } else { oReplaced = null; if (null != oFileStr) oReplaced = oFileStr.get(); if (null == oReplaced) { sPathHTML = getProperty("workareasput"); if (!sPathHTML.endsWith(sSep)) sPathHTML += sSep; sPathHTML += getParameter("gu_workarea") + sSep + "apps" + sSep + "Mailwire" + sSep + "html" + sSep + getParameter("gu_pageset") + sSep + getParameter("nm_pageset").replace(' ', '_') + ".html"; if (DebugFile.trace) DebugFile.writeln("PathHTML = " + sPathHTML); oFile = new File(sPathHTML); cBuffer = new char[new Long(oFile.length()).intValue()]; oFileRead = new FileReader(oFile); oFileRead.read(cBuffer); oFileRead.close(); if (DebugFile.trace) DebugFile.writeln(String.valueOf(cBuffer.length) + " characters readed"); oReplaced = new String(cBuffer); oFileStr = new SoftReference(oReplaced); } } String sPathJobDir = getProperty("storage"); if (!sPathJobDir.endsWith(sSep)) sPathJobDir += sSep; sPathJobDir += "jobs" + sSep + getParameter("gu_workarea") + sSep + getString(DB.gu_job) + sSep; FileWriter oFileWrite = new FileWriter(sPathJobDir + getString(DB.gu_job) + "_" + String.valueOf(oAtm.getInt(DB.pg_atom)) + ".html", true); oFileWrite.write((String) oReplaced); oFileWrite.close(); iPendingAtoms--; if (DebugFile.trace) { DebugFile.writeln("End FileDumper.process([Job:" + getStringNull(DB.gu_job, "") + ", Atom:" + String.valueOf(oAtm.getInt(DB.pg_atom)) + "])"); DebugFile.decIdent(); } return oReplaced; } | 17,949 |
1 | public static void resourceToFile(final String resource, final String filePath) throws IOException { log.debug("Classloader is " + IOCopyUtils.class.getClassLoader()); InputStream in = IOCopyUtils.class.getResourceAsStream(resource); if (in == null) { log.warn("Resource not '" + resource + "' found. Try to prefix with '/'"); in = IOCopyUtils.class.getResourceAsStream("/" + resource); } if (in == null) { throw new IOException("Resource not '" + resource + "' found."); } final File file = new File(filePath); final OutputStream out = FileUtils.openOutputStream(file); final int bytes = IOUtils.copy(in, out); IOUtils.closeQuietly(out); IOUtils.closeQuietly(in); log.debug("Copied resource '" + resource + "' to file " + filePath + " (" + bytes + " bytes)"); } | public String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); } | 17,950 |
0 | public static String encryptPassword(String username, String realm, String password) throws GeneralSecurityException { MessageDigest md = null; md = MessageDigest.getInstance("MD5"); md.update(username.getBytes()); md.update(":".getBytes()); md.update(realm.getBytes()); md.update(":".getBytes()); md.update(password.getBytes()); byte[] hash = md.digest(); return toHex(hash, hash.length); } | public boolean updateCalculatedHand(CalculateTransferObject query, BasicStartingHandTransferObject[] hands) throws CalculateDAOException { boolean retval = false; Connection connection = null; Statement statement = null; PreparedStatement prep = null; ResultSet result = null; StringBuffer sql = new StringBuffer(SELECT_ID_SQL); sql.append(appendQuery(query)); try { connection = getDataSource().getConnection(); connection.setAutoCommit(false); statement = connection.createStatement(); result = statement.executeQuery(sql.toString()); if (result.first()) { String id = result.getString("id"); prep = connection.prepareStatement(UPDATE_HANDS_SQL); for (int i = 0; i < hands.length; i++) { prep.setInt(1, hands[i].getWins()); prep.setInt(2, hands[i].getLoses()); prep.setInt(3, hands[i].getDraws()); prep.setString(4, id); prep.setString(5, hands[i].getHand()); if (prep.executeUpdate() != 1) { throw new SQLException("updated too many records in calculatehands, " + id + "-" + hands[i].getHand()); } } connection.commit(); } } catch (SQLException sqle) { try { connection.rollback(); } catch (SQLException e) { e.setNextException(sqle); throw new CalculateDAOException(e); } throw new CalculateDAOException(sqle); } finally { if (result != null) { try { result.close(); } catch (SQLException e) { throw new CalculateDAOException(e); } } if (statement != null) { try { statement.close(); } catch (SQLException e) { throw new CalculateDAOException(e); } } if (prep != null) { try { prep.close(); } catch (SQLException e) { throw new CalculateDAOException(e); } } } return retval; } | 17,951 |
1 | public static void copyFile(File in, File out) throws Exception { FileChannel sourceChannel = new FileInputStream(in).getChannel(); FileChannel destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 17,952 |
1 | public void copy(String pathFileIn, String pathFileOut) { try { File inputFile = new File(pathFileIn); File outputFile = new File(pathFileOut); FileReader in = new FileReader(inputFile); File outDir = new File(DirOut); if (!outDir.exists()) outDir.mkdirs(); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); this.printColumn(inputFile.getName(), outputFile.getPath()); } catch (Exception e) { e.printStackTrace(); } } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 17,953 |
1 | public void testRoundTrip_1(String resource) throws Exception { long start1 = System.currentTimeMillis(); File originalFile = File.createTempFile("RoundTripTest", "testRoundTrip_1"); FileOutputStream fos = new FileOutputStream(originalFile); IOUtils.copy(getClass().getResourceAsStream(resource), fos); fos.close(); long start2 = System.currentTimeMillis(); IsoFile isoFile = new IsoFile(new FileInputStream(originalFile).getChannel()); long start3 = System.currentTimeMillis(); ByteArrayOutputStream baos = new ByteArrayOutputStream(); WritableByteChannel wbc = Channels.newChannel(baos); long start4 = System.currentTimeMillis(); Walk.through(isoFile); long start5 = System.currentTimeMillis(); isoFile.getBox(wbc); wbc.close(); long start6 = System.currentTimeMillis(); System.err.println("Preparing tmp copy took: " + (start2 - start1) + "ms"); System.err.println("Parsing took : " + (start3 - start2) + "ms"); System.err.println("Writing took : " + (start6 - start3) + "ms"); System.err.println("Walking took : " + (start5 - start4) + "ms"); byte[] a = IOUtils.toByteArray(getClass().getResourceAsStream(resource)); byte[] b = baos.toByteArray(); Assert.assertArrayEquals(a, b); } | public void run() { try { Socket socket = getSocket(); System.out.println("opening socket to " + address + " on " + port); InputStream in = socket.getInputStream(); for (; ; ) { FileTransferHeader header = FileTransferHeader.readHeader(in); if (header == null) break; System.out.println("header: " + header); List<String> parts = header.getFilename().getSegments(); String filename; if (parts.size() > 0) filename = "dl-" + parts.get(parts.size() - 1); else filename = "dl-" + session.getScreenname(); System.out.println("writing to file " + filename); long sum = 0; if (new File(filename).exists()) { FileInputStream fis = new FileInputStream(filename); byte[] block = new byte[10]; for (int i = 0; i < block.length; ) { int count = fis.read(block); if (count == -1) break; i += count; } FileTransferChecksum summer = new FileTransferChecksum(); summer.update(block, 0, 10); sum = summer.getValue(); } FileChannel fileChannel = new FileOutputStream(filename).getChannel(); FileTransferHeader outHeader = new FileTransferHeader(header); outHeader.setHeaderType(FileTransferHeader.HEADERTYPE_ACK); outHeader.setIcbmMessageId(cookie); outHeader.setBytesReceived(0); outHeader.setReceivedChecksum(sum); OutputStream socketOut = socket.getOutputStream(); System.out.println("sending header: " + outHeader); outHeader.write(socketOut); for (int i = 0; i < header.getFileSize(); ) { long transferred = fileChannel.transferFrom(Channels.newChannel(in), 0, header.getFileSize() - i); System.out.println("transferred " + transferred); if (transferred == -1) return; i += transferred; } System.out.println("finished transfer!"); fileChannel.close(); FileTransferHeader doneHeader = new FileTransferHeader(header); doneHeader.setHeaderType(FileTransferHeader.HEADERTYPE_RECEIVED); doneHeader.setFlags(doneHeader.getFlags() | FileTransferHeader.FLAG_DONE); doneHeader.setBytesReceived(doneHeader.getBytesReceived() + 1); doneHeader.setIcbmMessageId(cookie); doneHeader.setFilesLeft(doneHeader.getFilesLeft() - 1); doneHeader.write(socketOut); if (doneHeader.getFilesLeft() - 1 <= 0) { socket.close(); break; } } } catch (IOException e) { e.printStackTrace(); return; } } | 17,954 |
1 | public static void main(String[] args) { if (args.length != 3) { System.out.println("Usage: HexStrToBin enc/dec <infileName> <outfilename>"); System.exit(1); } try { ByteArrayOutputStream os = new ByteArrayOutputStream(); InputStream in = new FileInputStream(args[1]); int len = 0; byte buf[] = new byte[1024]; while ((len = in.read(buf)) > 0) os.write(buf, 0, len); in.close(); os.close(); byte[] data = null; if (args[0].equals("dec")) data = decode(os.toString()); else { String strData = encode(os.toByteArray()); data = strData.getBytes(); } FileOutputStream fos = new FileOutputStream(args[2]); fos.write(data); fos.close(); } catch (Exception e) { e.printStackTrace(); } } | public static void copyFile(File dst, File src, boolean append) throws FileNotFoundException, IOException { dst.createNewFile(); FileChannel in = new FileInputStream(src).getChannel(); FileChannel out = new FileOutputStream(dst).getChannel(); long startAt = 0; if (append) startAt = out.size(); in.transferTo(startAt, in.size(), out); out.close(); in.close(); } | 17,955 |
1 | @SuppressWarnings("unchecked") public static void unzip(String zipFileName, String folder, boolean isCreate) throws IOException { File file = new File(zipFileName); File folderfile = null; if (file.exists() && file.isFile()) { String mfolder = folder == null ? file.getParent() : folder; String fn = file.getName(); fn = fn.substring(0, fn.lastIndexOf(".")); mfolder = isCreate ? (mfolder + File.separator + fn) : mfolder; folderfile = new File(mfolder); if (!folderfile.exists()) { folderfile.mkdirs(); } } else { throw new FileNotFoundException("不存在 zip 文件"); } ZipFile zipFile = new ZipFile(file); try { Enumeration<ZipArchiveEntry> en = zipFile.getEntries(); ZipArchiveEntry ze = null; while (en.hasMoreElements()) { ze = en.nextElement(); if (ze.isDirectory()) { String dirName = ze.getName(); dirName = dirName.substring(0, dirName.length() - 1); File f = new File(folderfile.getPath() + File.separator + dirName); f.mkdirs(); } else { File f = new File(folderfile.getPath() + File.separator + ze.getName()); if (!f.getParentFile().exists()) { f.getParentFile().mkdirs(); } f.createNewFile(); InputStream in = zipFile.getInputStream(ze); OutputStream out = new FileOutputStream(f); IOUtils.copy(in, out); out.close(); in.close(); } } } finally { zipFile.close(); } } | public static File copyToLibDirectory(final File file) throws FileNotFoundException, IOException { if (file == null || !file.exists()) { throw new FileNotFoundException(); } File directory = new File("lib/"); File dest = new File(directory, file.getName()); File parent = dest.getParentFile(); while (parent != null && !parent.equals(directory)) { parent = parent.getParentFile(); } if (parent.equals(directory)) { return file; } FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(file).getChannel(); out = new FileOutputStream(dest).getChannel(); in.transferTo(0, in.size(), out); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } return dest; } | 17,956 |
0 | private static void downloadFile(URL url, File destFile) throws Exception { try { URLConnection urlConnection = url.openConnection(); File tmpFile = null; try { tmpFile = File.createTempFile("remoteLib_", null); InputStream in = null; FileOutputStream out = null; try { in = urlConnection.getInputStream(); out = new FileOutputStream(tmpFile); IOUtils.copy(in, out); } finally { if (out != null) { out.close(); } if (in != null) { in.close(); } } FileUtils.copyFile(tmpFile, destFile); } finally { if (tmpFile != null) { tmpFile.delete(); } } } catch (Exception ex) { throw new RuntimeException("Could not download URL: " + url, ex); } } | private ExamModel(URL urlQuestions) throws IOException, DataCoherencyException { BufferedReader in = new BufferedReader(new InputStreamReader(urlQuestions.openStream())); String line; questions = new ArrayList<Question>(); questionsMap = new HashMap<String, Question>(); in = new BufferedReader(new InputStreamReader(urlQuestions.openStream(), "UTF-8")); int questionNumber = 0; Question question; String questText = ""; String hash = ""; int lookingFor = ExamModel.READING_HASH; while ((line = in.readLine()) != null) { switch(lookingFor) { case ExamModel.READING_HASH: if (line.length() == 0 || line.trim().length() == 0) continue; hash = line; questionNumber++; lookingFor = ExamModel.READING_QUESTION; break; case ExamModel.READING_QUESTION: if (line.equals("--")) { question = new Question(questionNumber, hash, questText); questions.add(question); questionsMap.put(question.getHash(), question); questText = ""; hash = null; lookingFor = ExamModel.READING_HASH; } else { questText = questText.concat(line + Constants.nl); } break; default: throw new DataCoherencyException("Neočekávaný konec souboru!"); } } questions.trimToSize(); in.close(); } | 17,957 |
0 | @Override protected String doInBackground(Location... params) { if (params == null || params.length == 0 || params[0] == null) { return null; } Location location = params[0]; String address = ""; String cachedAddress = DataService.GetInstance(mContext).getAddressFormLocationCache(location.getLatitude(), location.getLongitude()); if (!TextUtils.isEmpty(cachedAddress)) { address = cachedAddress; } else { StringBuilder jsonText = new StringBuilder(); HttpClient client = new DefaultHttpClient(); String url = String.format(GoogleMapAPITemplate, location.getLatitude(), location.getLongitude()); HttpGet httpGet = new HttpGet(url); try { HttpResponse response = client.execute(httpGet); StatusLine statusLine = response.getStatusLine(); int statusCode = statusLine.getStatusCode(); if (statusCode == 200) { HttpEntity entity = response.getEntity(); InputStream content = entity.getContent(); BufferedReader reader = new BufferedReader(new InputStreamReader(content)); String line; while ((line = reader.readLine()) != null) { jsonText.append(line); } JSONObject result = new JSONObject(jsonText.toString()); String status = result.getString(GoogleMapStatusSchema.status); if (GoogleMapStatusCodes.OK.equals(status)) { JSONArray addresses = result.getJSONArray(GoogleMapStatusSchema.results); if (addresses.length() > 0) { address = addresses.getJSONObject(0).getString(GoogleMapStatusSchema.formatted_address); if (!TextUtils.isEmpty(currentBestLocationAddress)) { DataService.GetInstance(mContext).updateAddressToLocationCache(location.getLatitude(), location.getLongitude(), currentBestLocationAddress); } } } } else { Log.e("Error", "Failed to get address via google map API."); } } catch (ClientProtocolException e) { e.printStackTrace(); Toast.makeText(mContext, "Failed to get location.", Toast.LENGTH_SHORT).show(); } catch (IOException e) { Toast.makeText(mContext, "Failed to get location.", Toast.LENGTH_SHORT).show(); } catch (JSONException e) { Toast.makeText(mContext, "Failed to get location.", Toast.LENGTH_SHORT).show(); } } return address; } | private void handleNodeUp(long eventID, long nodeID, String eventTime) { Category log = ThreadCategory.getInstance(OutageWriter.class); if (eventID == -1 || nodeID == -1) { log.warn(EventConstants.NODE_UP_EVENT_UEI + " ignored - info incomplete - eventid/nodeid: " + eventID + "/" + nodeID); return; } Connection dbConn = null; try { dbConn = DatabaseConnectionFactory.getInstance().getConnection(); int count = 0; if (openOutageExists(dbConn, nodeID)) { try { dbConn.setAutoCommit(false); } catch (SQLException sqle) { log.error("Unable to change database AutoCommit to FALSE", sqle); return; } PreparedStatement outageUpdater = dbConn.prepareStatement(OutageConstants.DB_UPDATE_OUTAGES_FOR_NODE); outageUpdater.setLong(1, eventID); outageUpdater.setTimestamp(2, convertEventTimeIntoTimestamp(eventTime)); outageUpdater.setLong(3, nodeID); count = outageUpdater.executeUpdate(); outageUpdater.close(); } else { log.warn("\'" + EventConstants.NODE_UP_EVENT_UEI + "\' for " + nodeID + " no open record."); } try { dbConn.commit(); if (log.isDebugEnabled()) log.debug("nodeUp closed " + count + " outages for nodeid " + nodeID + " in DB"); } catch (SQLException se) { log.warn("Rolling back transaction, nodeUp could not be recorded for nodeId: " + nodeID, se); try { dbConn.rollback(); } catch (SQLException sqle) { log.warn("SQL exception during rollback, reason", sqle); } } } catch (SQLException se) { log.warn("SQL exception while handling \'nodeRegainedService\'", se); } finally { try { if (dbConn != null) dbConn.close(); } catch (SQLException e) { log.warn("Exception closing JDBC connection", e); } } } | 17,958 |
0 | public static HttpData postRequest(HttpPost postMethod, String xml) throws ClientProtocolException, SocketException, IOException, SocketTimeoutException { HttpData data = new HttpData(); try { postMethod.addHeader("Content-Type", "text/xml; charset=utf-8"); postMethod.addHeader("Connection", "Keep-Alive"); postMethod.addHeader("User-Agent", "Openwave"); StringEntity se = new StringEntity(xml, HTTP.UTF_8); postMethod.setEntity(se); printPostRequestHeader(postMethod); HttpParams httpParams = new BasicHttpParams(); HttpConnectionParams.setConnectionTimeout(httpParams, HTTP_TIMEOUT); HttpClient client = new DefaultHttpClient(httpParams); client.getParams().setIntParameter(HttpConnectionParams.CONNECTION_TIMEOUT, DEFAULT_POST_REQUEST_TIMEOUT); client.getParams().setIntParameter(HttpConnectionParams.SO_TIMEOUT, DEFAULT_POST_REQUEST_TIMEOUT); HttpResponse httpResponse = client.execute(postMethod); if (httpResponse == null) throw new SocketTimeoutException(); if (httpResponse.getStatusLine().getStatusCode() == 200) { byte bytearray[] = ImageInputStream(httpResponse.getEntity()); data.setByteArray(bytearray); } else { data.setStatusCode(httpResponse.getStatusLine().getStatusCode() + ""); } } catch (SocketException e) { throw new SocketException(); } catch (SocketTimeoutException e) { throw new SocketTimeoutException(); } catch (ClientProtocolException e) { throw new ClientProtocolException(); } catch (IOException e) { throw new IOException(); } finally { postMethod.abort(); } return data; } | public void add(AddInterceptorChain chain, Entry entry, LDAPConstraints constraints) throws LDAPException { Connection con = (Connection) chain.getRequest().get(JdbcInsert.MYVD_DB_CON + "LDAPBaseServer"); if (con == null) { throw new LDAPException("Operations Error", LDAPException.OPERATIONS_ERROR, "No Database Connection"); } try { con.setAutoCommit(false); HashMap<String, String> db2ldap = (HashMap<String, String>) chain.getRequest().get(JdbcInsert.MYVD_DB_DB2LDAP + "LDAPBaseServer"); PreparedStatement ps = con.prepareStatement("INSERT INTO USERS (id,firstname,lastname,username) VALUES (?,?,?,?)"); ps.setInt(1, 5); ps.setString(2, entry.getEntry().getAttribute(db2ldap.get("firstname")).getStringValue()); ps.setString(3, entry.getEntry().getAttribute(db2ldap.get("lastname")).getStringValue()); ps.setString(4, entry.getEntry().getAttribute(db2ldap.get("username")).getStringValue()); ps.executeUpdate(); ps.close(); ps = con.prepareStatement("SELECT id FROM LOCATIONS WHERE name=?"); PreparedStatement inst = con.prepareStatement("INSERT INTO LOCATIONMAP (person,location) VALUES (?,?)"); LDAPAttribute l = entry.getEntry().getAttribute(db2ldap.get("name")); if (l == null) { con.rollback(); throw new LDAPException("Location is required", LDAPException.OBJECT_CLASS_VIOLATION, "Location is required"); } String[] vals = l.getStringValueArray(); for (int i = 0; i < vals.length; i++) { ps.setString(1, vals[i]); ResultSet rs = ps.executeQuery(); if (!rs.next()) { con.rollback(); throw new LDAPException("Location " + vals[i] + " does not exist", LDAPException.OBJECT_CLASS_VIOLATION, "Location " + vals[i] + " does not exist"); } inst.setInt(1, 5); inst.setInt(2, rs.getInt("id")); inst.executeUpdate(); } ps.close(); inst.close(); con.commit(); } catch (SQLException e) { try { con.rollback(); } catch (SQLException e1) { throw new LDAPException("Could not add entry or rollback transaction", LDAPException.OPERATIONS_ERROR, e.toString(), e); } throw new LDAPException("Could not add entry", LDAPException.OPERATIONS_ERROR, e.toString(), e); } } | 17,959 |
1 | public static String encodeMD5(String input) { MessageDigest md = null; byte[] byteHash = null; StringBuffer resultString = new StringBuffer(); try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); System.exit(-1); } md.reset(); md.update(input.getBytes()); byteHash = md.digest(); for (int i = 0; i < byteHash.length; i++) { resultString.append(Integer.toHexString(0xFF & byteHash[i])); } return (resultString.toString()); } | private void getRandomGuid(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = secureRandom.nextLong(); } else { rand = random.nextLong(); } sbValueBeforeMD5.append(id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); String valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } guid = sb.toString(); } | 17,960 |
1 | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.B64InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | void serialize(ZipOutputStream out) throws IOException { if ("imsmanifest.xml".equals(getFullName())) return; out.putNextEntry(new ZipEntry(getFullName())); IOUtils.copy(getDataStream(), out); out.closeEntry(); } | 17,961 |
1 | private String unJar(String jarPath, String jarEntry) { String path; if (jarPath.lastIndexOf("lib/") >= 0) path = jarPath.substring(0, jarPath.lastIndexOf("lib/")); else path = jarPath.substring(0, jarPath.lastIndexOf("/")); String relPath = jarEntry.substring(0, jarEntry.lastIndexOf("/")); try { new File(path + "/" + relPath).mkdirs(); JarFile jar = new JarFile(jarPath); ZipEntry ze = jar.getEntry(jarEntry); File bin = new File(path + "/" + jarEntry); IOUtils.copy(jar.getInputStream(ze), new FileOutputStream(bin)); } catch (Exception e) { e.printStackTrace(); } return path + "/" + jarEntry; } | public void render(ServiceContext serviceContext) throws Exception { if (serviceContext.getTemplateName() == null) throw new Exception("no Template defined for service: " + serviceContext.getServiceInfo().getRefName()); File f = new File(serviceContext.getTemplateName()); serviceContext.getResponse().setContentLength((int) f.length()); InputStream in = new FileInputStream(f); IOUtils.copy(in, serviceContext.getResponse().getOutputStream(), 0, (int) f.length()); in.close(); } | 17,962 |
0 | private String unzip(TupleInput input) { boolean zipped = input.readBoolean(); if (!zipped) { return input.readString(); } int len = input.readInt(); try { byte array[] = new byte[len]; input.read(array); GZIPInputStream in = new GZIPInputStream(new ByteArrayInputStream(array)); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copyTo(in, out); in.close(); out.close(); return new String(out.toByteArray()); } catch (IOException err) { throw new RuntimeException(err); } } | private String getSearchResults(String id) { try { final URL url = new URL("http://www.jaap.nl/api/jaapAPI.do?clientId=iPhone&limit=5&request=details&id=" + id + "&format=JSON&field=street_nr&field=zip&field=city&field=price&field=thumb&field=since&field=houseType&field=area&field=rooms&field=id"); final StringBuilder builder = new StringBuilder(); final BufferedReader rd = new BufferedReader(new InputStreamReader(url.openStream())); String s = ""; while ((s = rd.readLine()) != null) { builder.append(s); } rd.close(); return builder.toString(); } catch (Exception e) { e.printStackTrace(); } return null; } | 17,963 |
1 | private static void backupFile(File file) { FileChannel in = null, out = null; try { if (!file.getName().endsWith(".bak")) { in = new FileInputStream(file).getChannel(); out = new FileOutputStream(new File(file.toString() + ".bak")).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } } catch (Exception e) { e.getMessage(); } finally { try { System.gc(); if (in != null) in.close(); if (out != null) out.close(); } catch (Exception e) { e.getMessage(); } } } | public JSONObject getSourceGraph(HttpSession session, JSONObject json) throws JSONException { StringBuffer out = new StringBuffer(); Graph src = null; MappingManager manager = (MappingManager) session.getAttribute(RuncibleConstants.MAPPING_MANAGER.key()); try { src = manager.getSourceGraph(); if (src != null) { FlexGraphViewFactory factory = new FlexGraphViewFactory(); factory.setColorScheme(ColorSchemes.BLUES); factory.visit(src); GraphView view = factory.getGraphView(); GraphViewRenderer renderer = new FlexGraphViewRenderer(); renderer.setGraphView(view); InputStream xmlStream = renderer.renderGraphView(); StringWriter writer = new StringWriter(); IOUtils.copy(xmlStream, writer); writer.close(); System.out.println(writer.toString()); out.append(writer.toString()); } else { out.append("No source graph loaded."); } } catch (Exception e) { e.printStackTrace(); return JSONUtils.SimpleJSONError("Cannot load source graph: " + e.getMessage()); } return JSONUtils.SimpleJSONResponse(out.toString()); } | 17,964 |
0 | private GenomicSequence fetch(Chromosome k, int start, int end) throws IOException { try { String chr = k.toString(); if (chr.toLowerCase().startsWith("chr")) chr = chr.substring(3); SAXParserFactory f = SAXParserFactory.newInstance(); f.setNamespaceAware(false); f.setValidating(false); SAXParser parser = f.newSAXParser(); URL url = new URL("http://genome.ucsc.edu/cgi-bin/das/" + genomeVersion + "/dna?segment=" + URLEncoder.encode(chr, "UTF-8") + ":" + (start + 1) + "," + (end)); DASHandler handler = new DASHandler(); InputStream in = url.openStream(); parser.parse(in, handler); in.close(); GenomicSequence seq = new GenomicSequence(); seq.sequence = handler.bytes.toByteArray(); seq.start = start; seq.end = end; if (seq.sequence.length != seq.length()) throw new IOException("bad bound " + seq + " " + seq.sequence.length + " " + seq.length()); return seq; } catch (IOException err) { throw err; } catch (Exception e) { throw new IOException(e); } } | private static void copyContent(final File srcFile, final File dstFile, final boolean gzipContent) throws IOException { final File dstFolder = dstFile.getParentFile(); dstFolder.mkdirs(); if (!dstFolder.exists()) { throw new RuntimeException("Unable to create the folder " + dstFolder.getAbsolutePath()); } final InputStream in = new FileInputStream(srcFile); OutputStream out = new FileOutputStream(dstFile); if (gzipContent) { out = new GZIPOutputStream(out); } try { final byte[] buffer = new byte[1024]; int read; while ((read = in.read(buffer)) != -1) { out.write(buffer, 0, read); } } finally { in.close(); out.close(); } } | 17,965 |
0 | public void createIndex(File indexDir) throws SearchLibException, IOException { if (!indexDir.mkdir()) throw new SearchLibException("directory creation failed (" + indexDir + ")"); InputStream is = null; FileWriter target = null; for (String resource : resources) { String res = rootPath + '/' + resource; is = getClass().getResourceAsStream(res); if (is == null) is = getClass().getResourceAsStream("common" + '/' + resource); if (is == null) throw new SearchLibException("Unable to find resource " + res); try { File f = new File(indexDir, resource); if (f.getParentFile() != indexDir) f.getParentFile().mkdirs(); target = new FileWriter(f); IOUtils.copy(is, target); } finally { if (target != null) target.close(); if (is != null) is.close(); } } } | public boolean download(String address, String localFileName) { OutputStream out = null; URLConnection conn = null; InputStream in = null; try { URL url = new URL(address); out = new BufferedOutputStream(new FileOutputStream(localFileName)); conn = url.openConnection(); in = conn.getInputStream(); byte[] buffer = new byte[1024]; int numRead; long numWritten = 0; while ((numRead = in.read(buffer)) != -1) { out.write(buffer, 0, numRead); numWritten += numRead; } return true; } catch (Exception exception) { exception.printStackTrace(); } finally { try { if (in != null) { in.close(); } if (out != null) { out.close(); } } catch (IOException ioe) { } } return false; } | 17,966 |
0 | public static String translate(String s) { try { String result = null; URL url = new URL("http://translate.google.com/translate_t"); URLConnection connection = url.openConnection(); connection.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 6.0; Windows NT 5.1)"); connection.setDoOutput(true); PrintWriter out = new PrintWriter(connection.getOutputStream()); out.print("text=" + URLEncoder.encode(s, "UTF-8") + "&langpair="); if (s.matches("[\\u0000-\\u00ff]+")) { out.print("en|ja"); } else { out.print("ja|en"); } out.print("&hl=en&ie=UTF-8&oe=UTF-8"); out.close(); BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream(), "UTF-8")); String inputLine; while ((inputLine = in.readLine()) != null) { int textPos = inputLine.indexOf("id=result_box"); if (textPos >= 0) { int ltrPos = inputLine.indexOf("dir=ltr", textPos + 9); if (ltrPos >= 0) { int closePos = inputLine.indexOf("<", ltrPos + 8); if (closePos >= 0) { result = inputLine.substring(ltrPos + 8, closePos); } } } } in.close(); return result; } catch (Exception e) { e.printStackTrace(); } return null; } | public static String encrypt(String txt) throws Exception { MessageDigest md = MessageDigest.getInstance("SHA"); md.update(txt.getBytes("UTF-8")); byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | 17,967 |
0 | @Override public Class<?> loadClass(final String name) throws ClassNotFoundException { final String baseName = StringUtils.substringBefore(name, "$"); if (baseName.startsWith("java") && !whitelist.contains(baseName) && !additionalWhitelist.contains(baseName)) { throw new NoClassDefFoundError(name + " is a restricted class for GAE"); } if (!name.startsWith("com.gargoylesoftware")) { return super.loadClass(name); } super.loadClass(name); final InputStream is = getResourceAsStream(name.replaceAll("\\.", "/") + ".class"); final ByteArrayOutputStream bos = new ByteArrayOutputStream(); try { IOUtils.copy(is, bos); final byte[] bytes = bos.toByteArray(); return defineClass(name, bytes, 0, bytes.length); } catch (final IOException e) { throw new RuntimeException(e); } } | public static String getMD5(String in) { if (in == null) { return null; } try { MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(in.getBytes()); byte[] hash = digest.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < hash.length; i++) { String hex = Integer.toHexString(0xFF & hash[i]); if (hex.length() == 1) { hex = "0" + hex; } hexString.append(hex); } return hexString.toString(); } catch (Exception e) { Debug.logException(e); } return null; } | 17,968 |
1 | @Override public void copyTo(ManagedFile other) throws ManagedIOException { try { if (other.getType() == ManagedFileType.FILE) { IOUtils.copy(this.getContent().getInputStream(), other.getContent().getOutputStream()); } else { ManagedFile newFile = other.retrive(this.getPath()); newFile.createFile(); IOUtils.copy(this.getContent().getInputStream(), newFile.getContent().getOutputStream()); } } catch (IOException ioe) { throw ManagedIOException.manage(ioe); } } | private void loadMascotLibrary() { if (isMascotLibraryLoaded) return; try { boolean isLinux = false; boolean isAMD64 = false; String mascotLibraryFile; if (Configurator.getOSName().toLowerCase().contains("linux")) { isLinux = true; } if (Configurator.getOSArch().toLowerCase().contains("amd64")) { isAMD64 = true; } if (isLinux) { if (isAMD64) { mascotLibraryFile = "libmsparserj-64.so"; } else { mascotLibraryFile = "libmsparserj-32.so"; } } else { if (isAMD64) { mascotLibraryFile = "msparserj-64.dll"; } else { mascotLibraryFile = "msparserj-32.dll"; } } logger.warn("Using: " + mascotLibraryFile); URL mascot_lib = MascotDAO.class.getClassLoader().getResource(mascotLibraryFile); if (mascot_lib != null) { logger.debug("Mascot library URL: " + mascot_lib); tmpMascotLibraryFile = File.createTempFile("libmascot.so.", ".tmp", new File(System.getProperty("java.io.tmpdir"))); InputStream in = mascot_lib.openStream(); OutputStream out = new FileOutputStream(tmpMascotLibraryFile); IOUtils.copy(in, out); in.close(); out.close(); System.load(tmpMascotLibraryFile.getAbsolutePath()); isMascotLibraryLoaded = true; } else { throw new ConverterException("Could not load Mascot Library for system: " + Configurator.getOSName() + Configurator.getOSArch()); } } catch (IOException e) { throw new ConverterException("Error loading Mascot library: " + e.getMessage(), e); } } | 17,969 |
1 | public static void loadConfig(DeviceEntry defaultDevice, EmulatorContext emulatorContext) { Config.defaultDevice = defaultDevice; Config.emulatorContext = emulatorContext; File configFile = new File(getConfigPath(), "config2.xml"); try { if (configFile.exists()) { loadConfigFile("config2.xml"); } else { configFile = new File(getConfigPath(), "config.xml"); if (configFile.exists()) { loadConfigFile("config.xml"); for (Enumeration e = getDeviceEntries().elements(); e.hasMoreElements(); ) { DeviceEntry entry = (DeviceEntry) e.nextElement(); if (!entry.canRemove()) { continue; } removeDeviceEntry(entry); File src = new File(getConfigPath(), entry.getFileName()); File dst = File.createTempFile("dev", ".jar", getConfigPath()); IOUtils.copyFile(src, dst); entry.setFileName(dst.getName()); addDeviceEntry(entry); } } else { createDefaultConfigXml(); } saveConfig(); } } catch (IOException ex) { Logger.error(ex); createDefaultConfigXml(); } finally { if (configXml == null) { createDefaultConfigXml(); } } urlsMRU.read(configXml.getChildOrNew("files").getChildOrNew("recent")); initSystemProperties(); } | public void service(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { ServletContext context = getServletContext(); String forw = null; try { int maxUploadSize = 50000000; MultipartRequest multi = new MultipartRequest(request, ".", maxUploadSize); String descrizione = multi.getParameter("text"); File myFile = multi.getFile("uploadfile"); String filePath = multi.getOriginalFileName("uploadfile"); String path = "C:\\files\\"; try { FileInputStream inStream = new FileInputStream(myFile); FileOutputStream outStream = new FileOutputStream(path + myFile.getName()); while (inStream.available() > 0) { outStream.write(inStream.read()); } inStream.close(); outStream.close(); } catch (FileNotFoundException fnfe) { fnfe.printStackTrace(); } catch (IOException ioe) { ioe.printStackTrace(); } forw = "../sendDoc.jsp"; request.setAttribute("contentType", context.getMimeType(path + myFile.getName())); request.setAttribute("text", descrizione); request.setAttribute("path", path + myFile.getName()); request.setAttribute("size", Long.toString(myFile.length()) + " Bytes"); RequestDispatcher rd = request.getRequestDispatcher(forw); rd.forward(request, response); } catch (Exception e) { e.printStackTrace(); } } | 17,970 |
0 | public void load(String fileName) { BufferedReader bufReader; loaded = false; vector.removeAllElements(); try { if (fileName.startsWith("http:")) { URL url = new URL(fileName); bufReader = new BufferedReader(new InputStreamReader(url.openStream())); } else bufReader = new BufferedReader(new FileReader(fileName)); String inputLine; while ((inputLine = bufReader.readLine()) != null) { if (listener != null) listener.handleLine(inputLine); else vector.add(inputLine); } bufReader.close(); loaded = true; } catch (IOException e) { errorMsg = e.getMessage(); } } | public static List<String> retrieveLanguages() throws Exception { List<String> result = new ArrayList<String>(); URL url = new URL("http://translatewiki.net/w/i.php?title=Special:MessageGroupStats&group=out-osm-site"); String str = StreamUtil.toString(url.openStream()); Pattern pattern = Pattern.compile(".*language=([^;\"]+).*"); Matcher m = pattern.matcher(str); while (m.find()) { String lang = m.group(1); if (!result.contains(lang)) { result.add(lang); } } return result; } | 17,971 |
1 | public ActualTask(TEditor editor, TIGDataBase dataBase, String directoryPath, String myImagesBehaviour) { File myDirectory = new File(directoryPath); String[] list = myDirectory.list(); File fileXML = new File(directoryPath + "images.xml"); SAXBuilder builder = new SAXBuilder(false); try { Document docXML = builder.build(fileXML); Element root = docXML.getRootElement(); List images = root.getChildren("image"); Iterator j = images.iterator(); int i = 0; TIGDataBase.activateTransactions(); while (j.hasNext() && !stop && !cancel) { current = i; i++; Element image = (Element) j.next(); String name = image.getAttributeValue("name"); List categories = image.getChildren("category"); Iterator k = categories.iterator(); if (exists(list, name)) { String pathSrc = directoryPath.concat(name); String pathDst = System.getProperty("user.dir") + File.separator + "images" + File.separator + name.substring(0, 1).toUpperCase() + File.separator; String folder = System.getProperty("user.dir") + File.separator + "images" + File.separator + name.substring(0, 1).toUpperCase(); if (myImagesBehaviour.equals(TLanguage.getString("TIGImportDBDialog.REPLACE_IMAGES"))) { Vector<Vector<String>> aux = TIGDataBase.imageSearchByName(name.substring(0, name.lastIndexOf('.'))); if (aux.size() != 0) { int idImage = TIGDataBase.imageKeySearchName(name.substring(0, name.lastIndexOf('.'))); TIGDataBase.deleteAsociatedOfImage(idImage); } pathDst = pathDst.concat(name); } if (myImagesBehaviour.equals(TLanguage.getString("TIGImportDBDialog.ADD_IMAGES"))) { Vector aux = new Vector(); aux = TIGDataBase.imageSearchByName(name.substring(0, name.lastIndexOf('.'))); int fileCount = 0; if (aux.size() != 0) { while (aux.size() != 0) { fileCount++; aux = TIGDataBase.imageSearchByName(name.substring(0, name.lastIndexOf('.')) + "_" + fileCount); } pathDst = pathDst + name.substring(0, name.lastIndexOf('.')) + '_' + fileCount + name.substring(name.lastIndexOf('.'), name.length()); name = name.substring(0, name.lastIndexOf('.')) + '_' + fileCount + name.substring(name.lastIndexOf('.'), name.length()); } else { pathDst = pathDst.concat(name); } } String pathThumbnail = (pathDst.substring(0, pathDst.lastIndexOf("."))).concat("_th.jpg"); File newDirectoryFolder = new File(folder); if (!newDirectoryFolder.exists()) { newDirectoryFolder.mkdirs(); } try { FileChannel srcChannel = new FileInputStream(pathSrc).getChannel(); FileChannel dstChannel = new FileOutputStream(pathDst).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException exc) { System.out.println(exc.getMessage()); System.out.println(exc.toString()); } TIGDataBase.insertImageDB(name.substring(0, name.lastIndexOf('.')), name); int idImage = TIGDataBase.imageKeySearchName(name.substring(0, name.lastIndexOf('.'))); while (k.hasNext()) { Element category = (Element) k.next(); int idCategory = TIGDataBase.insertConceptDB(category.getValue()); TIGDataBase.insertAsociatedDB(idCategory, idImage); } } else { errorImages = errorImages + System.getProperty("line.separator") + name; } } TIGDataBase.executeQueries(); current = lengthOfTask; } catch (JDOMException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } | public static void copyDirectory(File sourceDirectory, File targetDirectory) throws IOException { File[] sourceFiles = sourceDirectory.listFiles(FILE_FILTER); File[] sourceDirectories = sourceDirectory.listFiles(DIRECTORY_FILTER); targetDirectory.mkdirs(); if (sourceFiles != null && sourceFiles.length > 0) { for (int i = 0; i < sourceFiles.length; i++) { File sourceFile = sourceFiles[i]; FileInputStream fis = new FileInputStream(sourceFile); FileOutputStream fos = new FileOutputStream(targetDirectory + File.separator + sourceFile.getName()); FileChannel fcin = fis.getChannel(); FileChannel fcout = fos.getChannel(); ByteBuffer buf = ByteBuffer.allocateDirect(8192); long size = fcin.size(); long n = 0; while (n < size) { buf.clear(); if (fcin.read(buf) < 0) { break; } buf.flip(); n += fcout.write(buf); } fcin.close(); fcout.close(); fis.close(); fos.close(); } } if (sourceDirectories != null && sourceDirectories.length > 0) { for (int i = 0; i < sourceDirectories.length; i++) { File directory = sourceDirectories[i]; File newTargetDirectory = new File(targetDirectory, directory.getName()); copyDirectory(directory, newTargetDirectory); } } } | 17,972 |
0 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | public void addUser(String name, String unit, String organizeName, int userId, int orgId, String email) { Connection connection = null; PreparedStatement ps = null; DBOperation dbo = factory.createDBOperation(POOL_NAME); try { connection = dbo.getConnection(); ps = connection.prepareStatement(INSERT_USER); ps.setInt(1, AddrslistMainDao.getNewID()); ps.setInt(2, -100); ps.setString(3, name.substring(0, 1)); ps.setString(4, name.substring(1)); ps.setString(5, unit); ps.setString(6, organizeName); ps.setString(7, ""); ps.setString(8, email); ps.setString(9, ""); ps.setString(10, ""); ps.setString(11, ""); ps.setString(12, ""); ps.setString(13, ""); ps.setString(14, ""); ps.setString(15, ""); ps.setString(16, ""); ps.setString(17, ""); ps.setString(18, ""); ps.setInt(19, userId); ps.setInt(20, orgId); ps.executeUpdate(); connection.commit(); } catch (Exception e) { e.printStackTrace(); try { connection.rollback(); } catch (SQLException e1) { } } finally { try { ps.close(); connection.close(); dbo.close(); } catch (Exception e) { } } } | 17,973 |
0 | public static void call(String host, String port, String method, String[] params) { cat.debug("call (host:" + host + " port:" + port + " method:" + method); try { String message = null; StringBuffer bufMessage = new StringBuffer(); bufMessage.append("<?xml version='1.0' encoding='ISO-8859-1'?>"); bufMessage.append("<methodCall>"); bufMessage.append("<methodName>"); bufMessage.append(method); bufMessage.append("</methodName>"); bufMessage.append("<params>"); if (params != null && params.length > 0) { for (int i = 0; i < params.length; i++) { bufMessage.append("<param><value><![CDATA[" + params[i] + "]]></value></param>"); } } bufMessage.append("</params></methodCall>"); message = bufMessage.toString(); bufMessage = null; String stringUrl = "http://" + host + ":" + port + "/RPC2"; cat.debug("Sending message to: " + stringUrl + "\n" + message); URL url = new URL(stringUrl); URLConnection urlConnection = url.openConnection(); urlConnection.setDoOutput(true); urlConnection.getOutputStream().write(message.getBytes()); urlConnection.getOutputStream().flush(); urlConnection.getOutputStream().close(); BufferedReader bufferedReader = new BufferedReader(new InputStreamReader(urlConnection.getInputStream())); String line; while ((line = bufferedReader.readLine()) != null) { cat.debug("#server# " + line); } bufferedReader.close(); } catch (Exception e) { cat.debug("Unable to send link to Gnowsis!", e); } } | public static ArrayList search(String query) throws Exception { ArrayList list = new ArrayList(); String url = "http://hypem.com/playlist/search/" + query + "/xml/1/list.xspf"; HttpURLConnection conn = (HttpURLConnection) (new URL(url)).openConnection(); conn.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 6.0; Windows NT 5.1; SV1; .NET CLR 1.1.4322; .NET CLR 2.0.50727)"); XmlNode node = XmlLoader.load(conn.getInputStream()); XmlNode tracks[] = node.getFirstChild("trackList").getChild("track"); for (int i = 0; i < tracks.length; i++) { String location = decrypt(tracks[i].getFirstChild("location").getText()); String annotation = tracks[i].getFirstChild("annotation").getText().replaceAll("[\r\n]", ""); list.add(location); System.out.print("found in Hypem: "); System.out.print(annotation); System.out.print(", "); System.out.println(location); } return list; } | 17,974 |
0 | private static String getRegistrationClasses() { CentralRegistrationClass c = new CentralRegistrationClass(); String name = c.getClass().getCanonicalName().replace('.', '/').concat(".class"); try { Enumeration<URL> urlEnum = c.getClass().getClassLoader().getResources("META-INF/MANIFEST.MF"); while (urlEnum.hasMoreElements()) { URL url = urlEnum.nextElement(); String file = url.getFile(); JarURLConnection jarConnection = (JarURLConnection) url.openConnection(); Manifest mf = jarConnection.getManifest(); Attributes attrs = (Attributes) mf.getAttributes(name); if (attrs != null) { String classes = attrs.getValue("RegistrationClasses"); return classes; } } } catch (IOException ex) { ex.printStackTrace(); } return ""; } | public static String convertStringToMD5(String toEnc) { try { MessageDigest mdEnc = MessageDigest.getInstance("MD5"); mdEnc.update(toEnc.getBytes(), 0, toEnc.length()); return new BigInteger(1, mdEnc.digest()).toString(16); } catch (Exception e) { return null; } } | 17,975 |
1 | private String getStoreName() { try { final MessageDigest digest = MessageDigest.getInstance("MD5"); digest.update(protectionDomain.getBytes()); final byte[] bs = digest.digest(); final StringBuffer sb = new StringBuffer(bs.length * 2); for (int i = 0; i < bs.length; i++) { final String s = Integer.toHexString(bs[i] & 0xff); if (s.length() < 2) sb.append('0'); sb.append(s); } return sb.toString(); } catch (final NoSuchAlgorithmException e) { throw new RuntimeException("Can't save credentials: digest method MD5 unavailable."); } } | @SmallTest public void testSha1() throws Exception { MessageDigest digest = MessageDigest.getInstance("SHA-1"); int numTests = mTestData.length; for (int i = 0; i < numTests; i++) { digest.update(mTestData[i].input.getBytes()); byte[] hash = digest.digest(); String encodedHash = encodeHex(hash); assertEquals(encodedHash, mTestData[i].result); } } | 17,976 |
1 | public void generate(FileObject outputDirectory, FileObject generatedOutputDirectory, List<Library> libraryModels, String tapdocXml) throws FileSystemException { if (!generatedOutputDirectory.exists()) { generatedOutputDirectory.createFolder(); } if (outputDirectory.exists()) { outputDirectory.createFolder(); } ZipUtils.extractZip(new ClasspathResource(classResolver, "/com/erinors/tapestry/tapdoc/service/xdoc/resources.zip"), outputDirectory); for (Library library : libraryModels) { String libraryName = library.getName(); String libraryLocation = library.getLocation(); generatedOutputDirectory.resolveFile(fileNameGenerator.getLibraryDirectory(libraryLocation)).createFolder(); try { String result = XsltUtils.xsltTransform(tapdocXml, getClass().getResourceAsStream("Library.xsl"), "libraryName", libraryName); FileObject index = generatedOutputDirectory.resolveFile(fileNameGenerator.getLibraryDirectory(libraryLocation)).resolveFile("index.xml"); Writer out = new OutputStreamWriter(index.getContent().getOutputStream(), "UTF-8"); out.write(result); out.close(); } catch (Exception e) { throw new RuntimeException(e); } for (Component component : library.getComponents()) { String componentName = component.getName(); System.out.println("Generating " + libraryName + ":" + componentName + "..."); Map<String, String> parameters = new HashMap<String, String>(); parameters.put("libraryName", libraryName); parameters.put("componentName", componentName); String result = XsltUtils.xsltTransform(tapdocXml, getClass().getResourceAsStream("Component.xsl"), parameters); Writer out = null; try { FileObject index = generatedOutputDirectory.resolveFile(fileNameGenerator.getComponentIndexFile(libraryLocation, componentName, true)); out = new OutputStreamWriter(index.getContent().getOutputStream(), "UTF-8"); out.write(result); out.close(); Resource specificationLocation = component.getSpecificationLocation(); if (specificationLocation.getRelativeResource(componentName + "_tapdoc/resource").getResourceURL() != null) { File srcResourcesDirectory = new File(specificationLocation.getRelativeResource(componentName + "_tapdoc/resource").getResourceURL().toURI()); FileObject dstResourcesFileObject = outputDirectory.resolveFile(fileNameGenerator.getComponentDirectory(libraryLocation, componentName)).resolveFile("resource"); if (srcResourcesDirectory.exists() && srcResourcesDirectory.isDirectory()) { File[] files = srcResourcesDirectory.listFiles(); if (files != null) { for (File resource : files) { if (resource.isFile() && !resource.isHidden()) { FileObject resourceFileObject = dstResourcesFileObject.resolveFile(resource.getName()); resourceFileObject.createFile(); InputStream inResource = null; OutputStream outResource = null; try { inResource = new FileInputStream(resource); outResource = resourceFileObject.getContent().getOutputStream(); IOUtils.copy(inResource, outResource); } finally { IOUtils.closeQuietly(inResource); IOUtils.closeQuietly(outResource); } } } } } } } catch (Exception e) { throw new RuntimeException(e); } finally { IOUtils.closeQuietly(out); } } } { Writer out = null; try { String result = XsltUtils.xsltTransform(tapdocXml, getClass().getResourceAsStream("Overview.xsl")); FileObject index = generatedOutputDirectory.resolveFile("index.xml"); out = new OutputStreamWriter(index.getContent().getOutputStream(), "UTF-8"); out.write(result); out.close(); } catch (Exception e) { throw new RuntimeException(e); } finally { IOUtils.closeQuietly(out); } } } | @Test public void config() throws IOException { Reader reader = new FileReader(new File("src/test/resources/test.yml")); Writer writer = new FileWriter(new File("src/site/apt/config.apt")); writer.write("------\n"); writer.write(FileUtils.readFully(reader)); writer.flush(); writer.close(); } | 17,977 |
1 | public static void copyFile(File from, File to) throws FileNotFoundException, IOException { requireFile(from); requireFile(to); if (to.isDirectory()) { to = new File(to, getFileName(from)); } FileChannel sourceChannel = new FileInputStream(from).getChannel(); FileChannel destinationChannel = new FileOutputStream(to).getChannel(); destinationChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); sourceChannel.close(); destinationChannel.close(); } | private boolean _copyPath(String source, String destination, Object handler) { try { FileInputStream fis = new FileInputStream(_fullPathForPath(source)); FileOutputStream fos = new FileOutputStream(_fullPathForPath(destination)); byte[] buffer = new byte[fis.available()]; int read; for (read = fis.read(buffer); read >= 0; read = fis.read(buffer)) { fos.write(buffer, 0, read); } fis.close(); fos.close(); return true; } catch (IOException ioe) { ioe.printStackTrace(); return false; } } | 17,978 |
1 | public boolean copyDirectoryTree(File srcPath, File dstPath) { try { if (srcPath.isDirectory()) { if (!dstPath.exists()) dstPath.mkdir(); String files[] = srcPath.list(); for (int i = 0; i < files.length; i++) copyDirectoryTree(new File(srcPath, files[i]), new File(dstPath, files[i])); } else { if (!srcPath.exists()) { errMsgLog += "copyDirectoryTree I/O error from '" + srcPath + "' does not exist.\n"; lastErrMsgLog = errMsgLog; return (false); } else { InputStream in = new FileInputStream(srcPath); OutputStream out = new FileOutputStream(dstPath); byte[] buf = new byte[10240]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } } return (true); } catch (Exception e) { errMsgLog += "copyDirectoryTree I/O error from '" + srcPath.getName() + "' to '" + dstPath.getName() + "\n " + e + "\n"; lastErrMsgLog = errMsgLog; return (false); } } | private void fileCopy(File filename) throws IOException { if (this.stdOut) { this.fileDump(filename); return; } File source_file = new File(spoolPath + "/" + filename); File destination_file = new File(copyPath + "/" + filename); FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; try { if (!source_file.exists() || !source_file.isFile()) throw new FileCopyException("no such source file: " + source_file); if (!source_file.canRead()) throw new FileCopyException("source file is unreadable: " + source_file); if (destination_file.exists()) { if (destination_file.isFile()) { BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); if (!destination_file.canWrite()) throw new FileCopyException("destination file is unwriteable: " + destination_file); if (!this.overwrite) { System.out.print("File " + destination_file + " already exists. Overwrite? (Y/N): "); System.out.flush(); if (!in.readLine().toUpperCase().equals("Y")) throw new FileCopyException("copy cancelled."); } } else throw new FileCopyException("destination is not a file: " + destination_file); } else { File parentdir = parent(destination_file); if (!parentdir.exists()) throw new FileCopyException("destination directory doesn't exist: " + destination_file); if (!parentdir.canWrite()) throw new FileCopyException("destination directory is unwriteable: " + destination_file); } source = new FileInputStream(source_file); destination = new FileOutputStream(destination_file); buffer = new byte[1024]; while ((bytes_read = source.read(buffer)) != -1) { destination.write(buffer, 0, bytes_read); } System.out.println("File " + filename + " successfull copied to " + destination_file); if (this.keep == false && source_file.isFile()) { try { source.close(); } catch (Exception e) { } if (source_file.delete()) { new File(this.spoolPath + "/info/" + filename + ".desc").delete(); } } } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.flush(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } | 17,979 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base: </td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted: </td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified: </td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added: </td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed: </td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total: </td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); } | 17,980 |
1 | protected String md5sum(String toCompute) throws Exception { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(toCompute.getBytes()); java.math.BigInteger hash = new java.math.BigInteger(1, md.digest()); return hash.toString(16); } | public static String getHash(String uri) throws NoSuchAlgorithmException { MessageDigest mDigest = MessageDigest.getInstance("MD5"); mDigest.update(uri.getBytes()); byte d[] = mDigest.digest(); StringBuffer hash = new StringBuffer(); for (int i = 0; i < d.length; i++) { hash.append(Integer.toHexString(0xFF & d[i])); } return hash.toString(); } | 17,981 |
0 | public void run() { waiting(200); try { URL url = new URL(urlAddress); SAXParserFactory spf = SAXParserFactory.newInstance(); SAXParser sp = spf.newSAXParser(); XMLReader xr = sp.getXMLReader(); XMLHandlerSingleAlbum myXMLHandler = new XMLHandlerSingleAlbum(); xr.setContentHandler(myXMLHandler); xr.parse(new InputSource(url.openStream())); statuscode = myXMLHandler.statuscode; if (statuscode != 200 && statuscode != 206) { throw new Exception(); } genre = myXMLHandler.genre; genreId = myXMLHandler.genreId; labelId = myXMLHandler.labelId; label = myXMLHandler.label; date = myXMLHandler.releaseDate; rating = myXMLHandler.rating; imageURL = myXMLHandler.imageURL; artist = myXMLHandler.artist; artistId = myXMLHandler.artistId; numberOfTracks = myXMLHandler.nItems; trackNames = myXMLHandler.tracks; handlerSetContent.sendEmptyMessage(0); dialog.dismiss(); updateImage(); } catch (Exception e) { final Exception ef = e; nameTextView.post(new Runnable() { public void run() { nameTextView.setText(R.string.couldnt_get_album_info); } }); } if (dialog.isShowing()) { dialog.dismiss(); } handlerDoneLoading.sendEmptyMessage(0); } | public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); if (to_file.exists()) { if (!to_file.canWrite()) abort("FileCopy: destination file is unwriteable: " + to_name); System.out.print("Overwrite existing file " + to_name + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) abort("FileCopy: existing file was not overwritten."); } else { String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 17,982 |
1 | public static void transfer(FileInputStream fileInStream, FileOutputStream fileOutStream) throws IOException { FileChannel fileInChannel = fileInStream.getChannel(); FileChannel fileOutChannel = fileOutStream.getChannel(); long fileInSize = fileInChannel.size(); try { long transferred = fileInChannel.transferTo(0, fileInSize, fileOutChannel); if (transferred != fileInSize) { throw new IOException("transfer() did not complete"); } } finally { ensureClose(fileInChannel, fileOutChannel); } } | @Override public void run() { try { if (LOG.isDebugEnabled()) { LOG.debug("Backupthread started"); } if (_file.exists()) { _file.delete(); } final ZipOutputStream zOut = new ZipOutputStream(new FileOutputStream(_file)); zOut.setLevel(9); final File xmlFile = File.createTempFile("mp3db", ".xml"); final OutputStream ost = new FileOutputStream(xmlFile); final XMLStreamWriter writer = XMLOutputFactory.newInstance().createXMLStreamWriter(ost, "UTF-8"); writer.writeStartDocument("UTF-8", "1.0"); writer.writeCharacters("\n"); writer.writeStartElement("mp3db"); writer.writeAttribute("version", Integer.toString(Main.ENGINEVERSION)); final MediafileDAO mfDAO = new MediafileDAO(); final AlbumDAO aDAO = new AlbumDAO(); final CdDAO cdDAO = new CdDAO(); final CoveritemDAO ciDAO = new CoveritemDAO(); int itemCount = 0; try { itemCount += mfDAO.getCount(); itemCount += aDAO.getCount(); itemCount += cdDAO.getCount(); itemCount += ciDAO.getCount(); fireStatusEvent(new StatusEvent(this, StatusEventType.MAX_VALUE, itemCount)); } catch (final Exception e) { LOG.error("Error getting size", e); fireStatusEvent(new StatusEvent(this, StatusEventType.MAX_VALUE, -1)); } int cdCounter = 0; int mediafileCounter = 0; int albumCounter = 0; int coveritemCounter = 0; int counter = 0; final List<CdIf> data = cdDAO.getCdsOrderById(); if (data.size() > 0) { final Map<Integer, Integer> albums = new HashMap<Integer, Integer>(); final Iterator<CdIf> it = data.iterator(); while (it.hasNext() && !_break) { final CdIf cd = it.next(); final Integer cdId = Integer.valueOf(cdCounter++); writer.writeStartElement(TypeConstants.XML_CD); exportCd(writer, cd, cdId); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); final List<MediafileIf> files = cd.getMediafiles(); final Iterator<MediafileIf> mfit = files.iterator(); MediafileIf mf; while (mfit.hasNext() && !_break) { mf = mfit.next(); final Integer mfId = Integer.valueOf(mediafileCounter++); writer.writeStartElement(TypeConstants.XML_MEDIAFILE); exportMediafile(writer, mf, mfId); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); final AlbumIf a = mf.getAlbum(); if (a != null) { Integer inte; if (albums.containsKey(a.getAid())) { inte = albums.get(a.getAid()); writeLink(writer, TypeConstants.XML_ALBUM, inte); } else { inte = Integer.valueOf(albumCounter++); writer.writeStartElement(TypeConstants.XML_ALBUM); exportAlbum(writer, a, inte); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); albums.put(a.getAid(), inte); if (a.hasCoveritems() && !_break) { final List<CoveritemIf> covers = a.getCoveritems(); final Iterator<CoveritemIf> coit = covers.iterator(); while (coit.hasNext() && !_break) { final Integer coveritemId = Integer.valueOf(coveritemCounter++); exportCoveritem(writer, zOut, coit.next(), coveritemId); fireStatusEvent(new StatusEvent(this, StatusEventType.NEW_VALUE, ++counter)); } } writer.writeEndElement(); } GenericDAO.getEntityManager().close(); } writer.writeEndElement(); } writer.writeEndElement(); writer.flush(); it.remove(); GenericDAO.getEntityManager().close(); } } writer.writeEndElement(); writer.writeEndDocument(); writer.flush(); writer.close(); ost.flush(); ost.close(); if (_break) { zOut.close(); _file.delete(); } else { zOut.putNextEntry(new ZipEntry("mp3.xml")); final InputStream xmlIn = FileUtils.openInputStream(xmlFile); IOUtils.copy(xmlIn, zOut); xmlIn.close(); zOut.close(); } xmlFile.delete(); fireStatusEvent(new StatusEvent(this, StatusEventType.FINISH)); } catch (final Exception e) { if (LOG.isDebugEnabled()) { LOG.debug("Error backup database", e); } fireStatusEvent(new StatusEvent(this, e, "")); _messenger.fireMessageEvent(new MessageEvent(this, "ERROR", MessageEventTypeEnum.ERROR, GuiStrings.getInstance().getString("error.backup"), e)); } } | 17,983 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 17,984 |
0 | private void getRandomGUID(boolean secure, Object o) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(o.getClass().getName()); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | @Override public String doInBackground() { boolean skinsDownloaded = false; dao = DataAccessFactory.getUMCDataSourceAccessor(DataAccessFactory.DB_TYPE_SQLITE, Publisher.getInstance().getParamDBDriverconnect() + Publisher.getInstance().getParamDBName(), Publisher.getInstance().getParamDBDriver(), Publisher.getInstance().getParamDBUser(), Publisher.getInstance().getParamDBPwd()); File downloadDir = new File(UMCConstants.APP_DIR + UMCConstants.fileSeparator + "downloads"); if (!downloadDir.exists()) { if (!downloadDir.mkdir()) { log.error("Could not create download folder '" + downloadDir.getAbsolutePath() + "' - create this directory and try again! "); } } if (downloadDir.exists()) { int[] i = tableOnline.getSelectedRows(); for (int a = 0; a < i.length; a++) { Update update = tableOnlineModel.getUpdate(i[a]); if (update.getType().equals(Update.TYPE_SKIN)) skinsDownloaded = true; if (UMCConstants.debug) log.debug("Starting to download UMC " + update.getType() + ": " + update.getDescription() + " - Version " + update.getVersionAvailable() + " from " + update.getDownloadURL()); try { int bytesRead = 0, bytesWrite = 0; double totalBytes = 0; URL url = new URL(update.getDownloadURL()); URLConnection urlC = url.openConnection(); urlC.setConnectTimeout(10000); totalBytes = urlC.getContentLength(); firePropertyChange("FILE", null, update.getName() + " " + sizeFormater.format(totalBytes / 1024)); InputStream is = url.openStream(); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(UMCConstants.APP_DIR + UMCConstants.fileSeparator + "downloads" + UMCConstants.fileSeparator + update.getDownloadURL().substring(update.getDownloadURL().lastIndexOf("/"), update.getDownloadURL().length()))); byte[] buf = new byte[1024 * 8]; while ((bytesRead = is.read(buf)) != -1) { bos.write(buf, 0, bytesRead); bytesWrite += bytesRead; publish(new Double(bytesWrite / totalBytes * 100).intValue()); } is.close(); bos.close(); String zip = UMCConstants.APP_DIR + UMCConstants.fileSeparator + "downloads" + UMCConstants.fileSeparator + update.getDownloadURL().substring(update.getDownloadURL().lastIndexOf("/"), update.getDownloadURL().length()); String destDir = ""; if (update.getType().equals(Update.TYPE_SKIN)) { destDir = UMCConstants.APP_DIR + UMCConstants.fileSeparator + "resources" + UMCConstants.fileSeparator + "Skins" + UMCConstants.fileSeparator + update.getName(); } else if (update.getType().equals(Update.TYPE_PLUGIN_MOVIEDB)) { destDir = UMCConstants.APP_DIR + UMCConstants.fileSeparator + "plugins" + UMCConstants.fileSeparator + "moviedb" + UMCConstants.fileSeparator + update.getName(); } else if (update.getType().equals(Update.TYPE_PLUGIN_MOVIESCANNER) || update.getType().equals(Update.TYPE_PLUGIN_SERIESCANNER) || update.getType().equals(Update.TYPE_PLUGIN_MUSICSCANNER) || update.getType().equals(Update.TYPE_PLUGIN_PHOTOSCANNER)) { destDir = UMCConstants.APP_DIR + UMCConstants.fileSeparator + "plugins" + UMCConstants.fileSeparator + "scanner" + UMCConstants.fileSeparator + update.getName(); } else if (update.getType().equals(Update.TYPE_PLUGIN_GUI)) { destDir = UMCConstants.APP_DIR + UMCConstants.fileSeparator + "plugins" + UMCConstants.fileSeparator + "gui" + UMCConstants.fileSeparator + update.getName(); } else { return "Download type could not be identified -> disgarding package"; } File f = new File(destDir); if (!f.exists()) { f.mkdir(); } ZipFile zipFile = new ZipFile(zip); firePropertyChange("INSTALL", null, update.getName() + " - " + zipFile.size() + " files"); Enumeration entries = zipFile.entries(); int count = 0; int maxSize = zipFile.size(); byte[] buffer = new byte[16384]; int len; while (entries.hasMoreElements()) { ZipEntry entry = (ZipEntry) entries.nextElement(); String entryFileName = entry.getName(); int lastIndex = entryFileName.lastIndexOf('/'); String internalPathToEntry = entryFileName.substring(0, lastIndex + 1); File dir = new File(destDir, internalPathToEntry); if (!dir.exists()) { dir.mkdirs(); } if (!entry.isDirectory()) { count++; publish(new Double((count / maxSize) * 100).intValue()); bos = new BufferedOutputStream(new FileOutputStream(new File(destDir, entryFileName))); BufferedInputStream bis = new BufferedInputStream(zipFile.getInputStream(entry)); while ((len = bis.read(buffer)) > 0) { bos.write(buffer, 0, len); } bos.flush(); bos.close(); bis.close(); } } if (update.getType().equals(Update.TYPE_SKIN)) { dao.registerSkin(update.getName(), update.getVersionAvailable()); } else if (update.getType().equals(Update.TYPE_PLUGIN_MOVIEDB)) { dao.registerPlugin(update.getName(), update.getVersionAvailable()); } else if (update.getType().equals(Update.TYPE_PLUGIN_MOVIESCANNER) || update.getType().equals(Update.TYPE_PLUGIN_SERIESCANNER) || update.getType().equals(Update.TYPE_PLUGIN_MUSICSCANNER) || update.getType().equals(Update.TYPE_PLUGIN_PHOTOSCANNER)) { dao.registerPlugin(update.getName(), update.getVersionAvailable()); } else if (update.getType().equals(Update.TYPE_PLUGIN_GUI)) { dao.registerPlugin(update.getName(), update.getVersionAvailable()); } tableOnlineModel.removeUpdate(i[a]); tableOnline.updateUI(); } catch (MalformedURLException e) { log.error(e); return "MalformedURLException"; } catch (IOException e) { log.error(e); return "IO Error"; } catch (Exception e) { log.error(e); return "Installation Error"; } } } else { return "Error"; } if (skinsDownloaded) { Publisher.getInstance().findAllSkins(); Publisher.getInstance().refreshParams(); Publisher.getInstance().createFrontendDirectoryStructure(); } return "OK"; } | 17,985 |
0 | private void getGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | public static void toZip(File zippedFile, File[] filesToZip, String zipComment, boolean savePath, int compressionLevel) throws IOException, FileNotFoundException, ZipException { if (zippedFile != null && filesToZip != null) { new File(zippedFile.getParent()).mkdirs(); ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(new CheckedOutputStream(new FileOutputStream(zippedFile), new CRC32()))); if (ZIP_NO_COMPRESSION <= compressionLevel && compressionLevel <= ZIP_MAX_COMPRESSION) out.setLevel(compressionLevel); else out.setLevel(ZIP_MAX_COMPRESSION); if (zipComment != null) out.setComment(zipComment); for (int i = 0; i < filesToZip.length; i++) { BufferedInputStream in; if (savePath) { in = new BufferedInputStream(new FileInputStream(filesToZip[i])); out.putNextEntry(new ZipEntry(cleanPath(filesToZip[i].getAbsolutePath()))); } else { in = new BufferedInputStream(new FileInputStream(filesToZip[i])); out.putNextEntry(new ZipEntry(filesToZip[i].getName())); } for (int c = in.read(); c != -1; c = in.read()) out.write(c); in.close(); } out.close(); } else throw new ZipException(MAIN_RESOURCE_BUNDLE.getString("default.ZipException.text")); } | 17,986 |
1 | public void copy(String sourcePath, String targetPath) throws IOException { File sourceFile = new File(sourcePath); File targetFile = new File(targetPath); FileInputStream fileInputStream = null; FileOutputStream fileOutputStream = null; try { fileInputStream = new FileInputStream(sourceFile); fileOutputStream = new FileOutputStream(targetFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = fileInputStream.read(buffer)) != -1) fileOutputStream.write(buffer, 0, bytesRead); } finally { if (fileInputStream != null) try { fileInputStream.close(); } catch (IOException exception) { JOptionPane.showMessageDialog(null, AcideLanguageManager.getInstance().getLabels().getString("s265") + sourcePath, AcideLanguageManager.getInstance().getLabels().getString("s266"), JOptionPane.ERROR_MESSAGE); AcideLog.getLog().error(exception.getMessage()); } if (fileOutputStream != null) try { fileOutputStream.close(); } catch (IOException exception) { JOptionPane.showMessageDialog(null, AcideLanguageManager.getInstance().getLabels().getString("s267") + targetPath, AcideLanguageManager.getInstance().getLabels().getString("268"), JOptionPane.ERROR_MESSAGE); AcideLog.getLog().error(exception.getMessage()); } } } | public void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; Closer c = new Closer(); try { source = c.register(new FileInputStream(sourceFile).getChannel()); destination = c.register(new FileOutputStream(destFile).getChannel()); destination.transferFrom(source, 0, source.size()); } catch (IOException e) { c.doNotThrow(); throw e; } finally { c.closeAll(); } } | 17,987 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public Boolean compress(String sSourceDir, ArrayList<String> aFiles, String sDestinationFilename) { logger.debug("compress(%s, %s, %s)", sSourceDir, aFiles, sDestinationFilename); BufferedInputStream oOrigin = null; FileOutputStream oDestination; ZipOutputStream oOutput = null; Iterator<String> oIterator; byte[] aData; try { oDestination = new FileOutputStream(sDestinationFilename); oOutput = new ZipOutputStream(new BufferedOutputStream(oDestination)); aData = new byte[BUFFER_SIZE]; oIterator = aFiles.iterator(); while (oIterator.hasNext()) { try { String sFilename = (String) oIterator.next(); FileInputStream fisInput = new FileInputStream(sSourceDir + File.separator + sFilename); oOrigin = new BufferedInputStream(fisInput, BUFFER_SIZE); ZipEntry oEntry = new ZipEntry(sFilename.replace('\\', '/')); oOutput.putNextEntry(oEntry); int iCount; while ((iCount = oOrigin.read(aData, 0, BUFFER_SIZE)) != -1) oOutput.write(aData, 0, iCount); } finally { StreamHelper.close(oOrigin); } } } catch (Exception oException) { logger.error(oException.getMessage(), oException); return false; } finally { StreamHelper.close(oOutput); } return true; } | 17,988 |
1 | public Object execute(ExecutionEvent event) throws ExecutionException { final List<InformationUnit> informationUnitsFromExecutionEvent = InformationHandlerUtil.getInformationUnitsFromExecutionEvent(event); Shell activeShell = HandlerUtil.getActiveShell(event); DirectoryDialog fd = new DirectoryDialog(activeShell, SWT.SAVE); String section = Activator.getDefault().getDialogSettings().get("lastExportSection"); fd.setFilterPath(section); final String open = fd.open(); if (open != null) { Activator.getDefault().getDialogSettings().put("lastExportSection", open); CancelableRunnable runnable = new CancelableRunnable() { @Override protected IStatus runCancelableRunnable(IProgressMonitor monitor) { IStatus returnValue = Status.OK_STATUS; monitor.beginTask(NLS.bind(Messages.SaveFileOnDiskHandler_SavingFiles, open), informationUnitsFromExecutionEvent.size()); for (InformationUnit informationUnit : informationUnitsFromExecutionEvent) { if (!monitor.isCanceled()) { monitor.setTaskName(NLS.bind(Messages.SaveFileOnDiskHandler_Saving, informationUnit.getLabel())); InformationStructureRead read = InformationStructureRead.newSession(informationUnit); read.getValueByNodeId(Activator.FILENAME); IFile binaryReferenceFile = InformationUtil.getBinaryReferenceFile(informationUnit); FileWriter writer = null; try { if (binaryReferenceFile != null) { File file = new File(open, (String) read.getValueByNodeId(Activator.FILENAME)); InputStream contents = binaryReferenceFile.getContents(); writer = new FileWriter(file); IOUtils.copy(contents, writer); monitor.worked(1); } } catch (Exception e) { returnValue = StatusCreator.newStatus(NLS.bind(Messages.SaveFileOnDiskHandler_ErrorSaving, informationUnit.getLabel(), e)); break; } finally { if (writer != null) { try { writer.flush(); writer.close(); } catch (IOException e) { } } } } } return returnValue; } }; ProgressMonitorDialog progressMonitorDialog = new ProgressMonitorDialog(activeShell); try { progressMonitorDialog.run(true, true, runnable); } catch (InvocationTargetException e) { if (e.getCause() instanceof CoreException) { ErrorDialog.openError(activeShell, Messages.SaveFileOnDiskHandler_ErrorSaving2, Messages.SaveFileOnDiskHandler_ErrorSaving2, ((CoreException) e.getCause()).getStatus()); } else { ErrorDialog.openError(activeShell, Messages.SaveFileOnDiskHandler_ErrorSaving2, Messages.SaveFileOnDiskHandler_ErrorSaving2, StatusCreator.newStatus(Messages.SaveFileOnDiskHandler_ErrorSaving3, e)); } } catch (InterruptedException e) { } } return null; } | private void copyFile(File source, File target) throws IOException { FileChannel srcChannel = new FileInputStream(source).getChannel(); FileChannel dstChannel = new FileOutputStream(target).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } | 17,989 |
0 | public static void copyFile(File src, File dst) throws IOException { BufferedInputStream is = new BufferedInputStream(new FileInputStream(src)); BufferedOutputStream os = new BufferedOutputStream(new FileOutputStream(dst)); byte[] buf = new byte[1024]; int count = 0; while ((count = is.read(buf, 0, 1024)) != -1) os.write(buf, 0, count); is.close(); os.close(); } | public void update() { if (url == null) { throw new IllegalArgumentException("URL cannot be null!"); } try { URLConnection urlConnection = url.openConnection(); urlConnection.setRequestProperty("User-Agent", Settings.INSTANCE.getUserAgent()); SyndFeedInput input = new SyndFeedInput(); SyndFeed syndFeed = input.build(new XmlReader(url)); Channel channel = (Channel) syndFeed.createWireFeed(syndFeed.getFeedType()); long lastModified = urlConnection.getLastModified(); if (feed.getLastModified() != lastModified) { Server.print("Updating: " + feed.getName()); feed.setLastModified(lastModified); ArrayList<String> cachedItems = getCachedItems(); List<Item> items = channel.getItems(); if (items.isEmpty()) { return; } if (cachedItems.isEmpty()) { Database.INSTANCE.addItems(feed, items); } else { for (Item item : items) { if (!cachedItems.contains(item.getTitle())) { Database.INSTANCE.addItem(feed, item); } } } cacheItems(items); Settings.INSTANCE.persist(); Server.print("Done updating: " + feed.getName()); } } catch (ConnectException e) { Server.print("Could not connect to \"" + feed.getName() + "\""); } catch (SocketException e) { Server.print("Could not connect to \"" + feed.getName() + "\""); } catch (Exception e) { e.printStackTrace(); } } | 17,990 |
0 | public String encryptPassword(String clearPassword) throws NullPointerException { MessageDigest sha; try { sha = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new NullPointerException("NoSuchAlgorithmException: " + e.toString()); } sha.update(clearPassword.getBytes()); byte encryptedPassword[] = sha.digest(); sha = null; StringBuffer result = new StringBuffer(); for (int i = 0; i < encryptedPassword.length; i++) { result.append(Byte.toString(encryptedPassword[i])); } return (result.toString()); } | public static boolean isDicom(URL url) { assert url != null; boolean isDicom = false; BufferedInputStream is = null; try { is = new BufferedInputStream(url.openStream()); is.skip(DICOM_PREAMBLE_SIZE); byte[] buf = new byte[DICM.length]; is.read(buf); if (buf[0] == DICM[0] && buf[1] == DICM[1] && buf[2] == DICM[2] && buf[3] == DICM[3]) { isDicom = true; } } catch (Exception exc) { System.out.println("ImageFactory::isDicom(): exc=" + exc); } finally { if (is != null) { try { is.close(); } catch (Exception exc) { } } } return isDicom; } | 17,991 |
0 | private File unzipArchive(File zipArchive, File outDir, String nameInZipArchive) throws IOException { File mainFile = null; ZipEntry entry = null; ZipInputStream zis = new ZipInputStream(new FileInputStream((zipArchive))); FileOutputStream fos = null; byte buffer[] = new byte[4096]; int bytesRead; while ((entry = zis.getNextEntry()) != null) { File outFile = new File(outDir, entry.getName()); if (entry.getName().equals(nameInZipArchive)) mainFile = outFile; fos = new FileOutputStream(outFile); while ((bytesRead = zis.read(buffer)) != -1) fos.write(buffer, 0, bytesRead); fos.close(); } zis.close(); return mainFile; } | public static Collection<SearchKeyResult> searchKey(String iText, String iKeyServer) throws Exception { Vector<SearchKeyResult> outVec = new Vector<SearchKeyResult>(); String uri = iKeyServer + "/pks/lookup?search=" + URLEncoder.encode(iText, "UTF-8"); URL url = new URL(uri); BufferedReader input = new BufferedReader(new InputStreamReader(url.openStream())); Pattern regex = Pattern.compile("pub.*?<a\\s+href\\s*=\"(.*?)\".*?>\\s*(\\w+)\\s*</a>.*?(\\d+-\\d+-\\d+).*?<a\\s+href\\s*=\".*?\".*?>\\s*(.+?)\\s*</a>", Pattern.CANON_EQ); String line; while ((line = input.readLine()) != null) { Matcher regexMatcher = regex.matcher(line); while (regexMatcher.find()) { String id = regexMatcher.group(2); String downUrl = iKeyServer + regexMatcher.group(1); String downDate = regexMatcher.group(3); String name = HTMLDecoder.decodeHTML(regexMatcher.group(4)); outVec.add(new SearchKeyResult(id, name, downDate, downUrl)); } } input.close(); return outVec; } | 17,992 |
0 | public boolean download(URL url, File file) { OutputStream out = null; URLConnection conn = null; InputStream in = null; try { out = new BufferedOutputStream(new FileOutputStream(file)); conn = url.openConnection(); in = conn.getInputStream(); byte[] buffer = new byte[4096]; int numRead; long numWritten = 0; while ((numRead = in.read(buffer)) != -1) { out.write(buffer, 0, numRead); numWritten += numRead; } } catch (Exception e) { System.out.println(e); return false; } finally { try { if (in != null) { in.close(); } if (out != null) { out.close(); } } catch (IOException ioe) { return false; } } return true; } | public static void storePolicy(DBBroker broker, XmldbURI docPath) throws EXistException, IOException { XmldbURI docName = docPath.lastSegment(); URL url = XACMLUtil.class.getResource(docPath.toString()); if (url == null) return; String content = toString(url.openStream()); if (content == null) return; Collection collection = getPolicyCollection(broker); if (collection == null) return; TransactionManager transact = broker.getBrokerPool().getTransactionManager(); Txn txn = transact.beginTransaction(); try { IndexInfo info = collection.validateXMLResource(txn, broker, docName, content); collection.store(txn, broker, info, content, false); transact.commit(txn); } catch (Exception e) { transact.abort(txn); if (e instanceof EXistException) throw (EXistException) e; throw new EXistException("Error storing policy '" + docPath + "'", e); } } | 17,993 |
0 | public static String md5(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("utf-8"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } | public static void copyFile(File in, File out) throws FileNotFoundException, IOException { FileChannel sourceChannel = null; FileChannel destinationChannel = null; try { sourceChannel = new FileInputStream(in).getChannel(); destinationChannel = new FileOutputStream(out).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); } finally { try { sourceChannel.close(); } catch (Exception ex) { } try { destinationChannel.close(); } catch (Exception ex) { } } } | 17,994 |
0 | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(128); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(32); for (int j = 0; j < array.length; ++j) { int b = array[j] & TWO_BYTES; if (b < PAD_BELOW) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { } } | public void mouseClicked(MouseEvent e) { if (e.getClickCount() == 2) { int index = lst.locationToIndex(e.getPoint()); try { String location = (String) lst.getModel().getElementAt(index), refStr, startStr, stopStr; if (location.indexOf("at chr") != -1) { location = location.substring(location.indexOf("at ") + 3); refStr = location.substring(0, location.indexOf(":")); location = location.substring(location.indexOf(":") + 1); startStr = location.substring(0, location.indexOf("-")); stopStr = location.substring(location.indexOf("-") + 1); moveViewer(refStr, Integer.parseInt(startStr), Integer.parseInt(stopStr)); } else { String hgsid = chooseHGVersion(selPanel.dsn); URL connectURL = new URL("http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=" + hgsid + "&position=" + location); InputStream urlStream = connectURL.openStream(); BufferedReader reader = new BufferedReader(new InputStreamReader(urlStream)); readUCSCLocation(location, reader); } } catch (Exception exc) { exc.printStackTrace(); } } } | 17,995 |
1 | public ActualTask(TEditor editor, TIGDataBase dataBase, String directoryPath) { File myDirectory = new File(directoryPath); String[] list = myDirectory.list(); int i; for (i = 0; ((i < list.length) && !stop); i++) { current = i; if ((list[i].compareTo("Images") != 0) && ((list[i].substring(list[i].lastIndexOf('.'), list[i].length()).toLowerCase().compareTo(".jpg") == 0) || (list[i].substring(list[i].lastIndexOf('.'), list[i].length()).toLowerCase().compareTo(".bmp") == 0) || (list[i].substring(list[i].lastIndexOf('.'), list[i].length()).toLowerCase().compareTo(".png") == 0))) { String name = list[i]; String pathSrc = directoryPath.concat(list[i]); name = name.replace(' ', '_').replace(',', '-').replace('á', 'a').replace('é', 'e').replace('í', 'i').replace('ó', 'o').replace('ú', 'u').replace('Á', 'A').replace('É', 'E').replace('Í', 'I').replace('Ó', 'O').replace('Ú', 'U'); String pathDst = directoryPath.concat(name); Vector aux = new Vector(); aux = dataBase.imageSearch(name.substring(0, name.lastIndexOf('.'))); if (aux.size() != 0) pathDst = pathDst.substring(0, pathDst.lastIndexOf('.')) + '_' + aux.size() + ".png"; File src = new File(pathSrc); File absPath = new File(""); String nameSrc = '.' + src.separator + "Images" + src.separator + name.substring(0, 1).toUpperCase() + src.separator + pathDst.substring(pathDst.lastIndexOf(src.separator) + 1, pathDst.length()); String newDirectory = '.' + src.separator + "Images" + src.separator + name.substring(0, 1).toUpperCase(); String imagePathThumb = (nameSrc.substring(0, nameSrc.lastIndexOf("."))).concat("_th.jpg"); ImageIcon image = null; if (src != null) { if (TFileUtils.isJAIRequired(src)) { RenderedOp src_aux = JAI.create("fileload", src.getAbsolutePath()); BufferedImage bufferedImage = src_aux.getAsBufferedImage(); image = new ImageIcon(bufferedImage); } else { image = new ImageIcon(src.getAbsolutePath()); } if (image.getImageLoadStatus() == MediaTracker.ERRORED) { System.out.print("Error al insertar imagen: "); System.out.println(pathDst); } else { int option = 0; imageFile = new File(directoryPath + "Images"); if (!imageFile.exists()) { TIGNewImageDataDialog dialog = new TIGNewImageDataDialog(editor, dataBase, image, nameSrc.substring(nameSrc.lastIndexOf(File.separator) + 1, nameSrc.length()), list[i].substring(0, list[i].lastIndexOf('.')), myTask); option = dialog.getOption(); if (option != 0) { File newDirectoryFolder = new File(newDirectory); newDirectoryFolder.mkdirs(); try { FileChannel srcChannel = new FileInputStream(pathSrc).getChannel(); FileChannel dstChannel = new FileOutputStream(nameSrc).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException exc) { System.out.println(exc.getMessage()); System.out.println(exc.toString()); } } } if (imageFile.exists()) { dataBase.insertImageDB(list[i].substring(0, list[i].lastIndexOf('.')), nameSrc.substring(nameSrc.lastIndexOf(File.separator) + 1, nameSrc.length())); File newDirectoryFolder = new File(newDirectory); newDirectoryFolder.mkdirs(); try { FileChannel srcChannel = new FileInputStream(pathSrc).getChannel(); FileChannel dstChannel = new FileOutputStream(nameSrc).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException exc) { System.out.println(exc.getMessage()); System.out.println(exc.toString()); } } try { int thumbWidth = PREVIEW_WIDTH; int thumbHeight = PREVIEW_HEIGHT; double thumbRatio = (double) thumbWidth / (double) thumbHeight; int imageWidth = image.getIconWidth(); int imageHeight = image.getIconHeight(); double imageRatio = (double) imageWidth / (double) imageHeight; if (thumbRatio < imageRatio) { thumbHeight = (int) (thumbWidth / imageRatio); } else { thumbWidth = (int) (thumbHeight * imageRatio); } BufferedImage thumbImage = new BufferedImage(thumbWidth, thumbHeight, BufferedImage.TYPE_INT_RGB); Graphics2D graphics2D = thumbImage.createGraphics(); graphics2D.setRenderingHint(RenderingHints.KEY_INTERPOLATION, RenderingHints.VALUE_INTERPOLATION_BILINEAR); graphics2D.drawImage(image.getImage(), 0, 0, thumbWidth, thumbHeight, null); BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(imagePathThumb)); JPEGImageEncoder encoder = JPEGCodec.createJPEGEncoder(out); JPEGEncodeParam param = encoder.getDefaultJPEGEncodeParam(thumbImage); int quality = 100; quality = Math.max(0, Math.min(quality, 100)); param.setQuality((float) quality / 100.0f, false); encoder.setJPEGEncodeParam(param); encoder.encode(thumbImage); out.close(); } catch (Exception ex) { System.out.println(ex.getMessage()); System.out.println(ex.toString()); } } } } } if (imageFile.exists() && !stop) { try { DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory.newInstance(); DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder(); Document doc = docBuilder.parse(imageFile); Element dataBaseElement = doc.getDocumentElement(); if (dataBaseElement.getTagName().equals("dataBase")) { NodeList imageNodeList = dataBaseElement.getElementsByTagName("image"); for (int j = 0; j < imageNodeList.getLength(); j++) { current++; Node imageNode = imageNodeList.item(j); NodeList lista = imageNode.getChildNodes(); Node nameNode = imageNode.getChildNodes().item(0); String imageName = nameNode.getChildNodes().item(0).getNodeValue(); int imageKey = dataBase.imageKeySearchName(imageName.substring(0, imageName.lastIndexOf('.'))); if (imageKey != -1) { for (int k = 1; k < imageNode.getChildNodes().getLength(); k++) { Node keyWordNode = imageNode.getChildNodes().item(k); String keyWord = keyWordNode.getChildNodes().item(0).getNodeValue(); int conceptKey = dataBase.conceptKeySearch(keyWord); if (conceptKey == -1) { dataBase.insertConceptDB(keyWord); conceptKey = dataBase.conceptKeySearch(keyWord); } dataBase.insertAsociatedDB(conceptKey, imageKey); } } } } } catch (Exception ex) { System.out.println(ex.getMessage()); System.out.println(ex.toString()); } } current = lengthOfTask; } | @Override protected svm_model loadModel(InputStream inputStream) throws IOException { File tmpFile = File.createTempFile("tmp", ".mdl"); FileOutputStream output = new FileOutputStream(tmpFile); try { IOUtils.copy(inputStream, output); return libsvm.svm.svm_load_model(tmpFile.getPath()); } finally { output.close(); tmpFile.delete(); } } | 17,996 |
0 | protected void copy(File src, File dest) throws IOException { if (src.isDirectory() && dest.isFile()) throw new IOException("Cannot copy a directory to a file"); if (src.isDirectory()) { File newDir = new File(dest, src.getName()); if (!newDir.mkdirs()) throw new IOException("Cannot create a new Directory"); File[] entries = src.listFiles(); for (int i = 0; i < entries.length; ++i) copy(entries[i], newDir); return; } if (dest.isDirectory()) { File newFile = new File(dest, src.getName()); newFile.createNewFile(); copy(src, newFile); return; } try { if (src.length() == 0) { dest.createNewFile(); return; } FileChannel fc = new FileInputStream(src).getChannel(); FileChannel dstChannel = new FileOutputStream(dest).getChannel(); long transfered = 0; long totalLength = src.length(); while (transfered < totalLength) { long num = fc.transferTo(transfered, totalLength - transfered, dstChannel); if (num == 0) throw new IOException("Error while copying"); transfered += num; } dstChannel.close(); fc.close(); } catch (IOException e) { if (os.equals("Unix")) { _logger.fine("Trying to use cp to copy file..."); File cp = new File("/usr/bin/cp"); if (!cp.exists()) cp = new File("/bin/cp"); if (!cp.exists()) cp = new File("/usr/local/bin/cp"); if (!cp.exists()) cp = new File("/sbin/cp"); if (!cp.exists()) cp = new File("/usr/sbin/cp"); if (!cp.exists()) cp = new File("/usr/local/sbin/cp"); if (cp.exists()) { Process cpProcess = Runtime.getRuntime().exec(cp.getAbsolutePath() + " '" + src.getAbsolutePath() + "' '" + dest.getAbsolutePath() + "'"); int errCode; try { errCode = cpProcess.waitFor(); } catch (java.lang.InterruptedException ie) { throw e; } return; } } throw e; } } | public void testGetResource_FileOutsideOfClasspath() throws Exception { File temp = File.createTempFile("dozerfiletest", ".txt"); temp.deleteOnExit(); String resourceName = "file:" + temp.getAbsolutePath(); URL url = loader.getResource(resourceName); assertNotNull("URL should not be null", url); InputStream is = url.openStream(); assertNotNull("input stream should not be null", is); } | 17,997 |
0 | public void setInitialValues(String Tag, Vector subfields) { this.tftag.setText(Tag); presentineditor = new ArrayList(); this.glosf = subfields; for (int i = 0; i < subfields.size(); i++) { this.dlm2.addElement(subfields.elementAt(i).toString().trim()); presentineditor.add(subfields.elementAt(i).toString().trim()); } String xmlreq = CataloguingXMLGenerator.getInstance().getSubFieldsRepeat("5", Tag); try { java.net.URL url = new java.net.URL(ResourceBundle.getBundle("Administration").getString("ServerURL") + ResourceBundle.getBundle("Administration").getString("ServletSubPath") + "MarcDictionaryServlet"); java.net.URLConnection urlconn = (java.net.URLConnection) url.openConnection(); urlconn.setDoOutput(true); java.io.OutputStream dos = urlconn.getOutputStream(); dos.write(xmlreq.getBytes()); java.io.InputStream ios = urlconn.getInputStream(); SAXBuilder saxb = new SAXBuilder(); Document retdoc = saxb.build(ios); Element retroot = retdoc.getRootElement(); hashtable = new Hashtable(); List list = retroot.getChildren(); System.out.println("Point of execution came here " + list.size()); for (int i = 0; i < list.size(); i++) { List chilist = ((Element) list.get(i)).getChildren(); hashtable.put(((Element) chilist.get(0)).getText().trim(), ((Element) chilist.get(1)).getText().trim()); } System.out.println(hashtable); Enumeration keys = hashtable.keys(); while (keys.hasMoreElements()) this.dlm1.addElement(keys.nextElement()); } catch (Exception e) { System.out.println(e); } } | protected void removeMessage(ReplicationMessage message) { logger.info(String.format("remove replication message: %d", message.getId())); ConnectionProvider cp = null; Connection conn = null; PreparedStatement ps = null; try { SessionFactoryImplementor impl = (SessionFactoryImplementor) portalDao.getSessionFactory(); cp = impl.getConnectionProvider(); conn = cp.getConnection(); conn.setAutoCommit(false); ps = conn.prepareStatement("delete from light_replication_message where id=?"); ps.setLong(1, message.getId()); ps.executeUpdate(); conn.commit(); ps.close(); conn.close(); } catch (Exception e) { try { conn.rollback(); ps.close(); conn.close(); } catch (Exception se) { } } } | 17,998 |
0 | protected void configureGraphicalViewer() { super.configureGraphicalViewer(); GraphicalViewer viewer = getGraphicalViewer(); viewer.setEditPartFactory(createEditPartFactory()); ScalableRootEditPart rootEditPart = new ScalableRootEditPart(); viewer.setRootEditPart(rootEditPart); ZoomManager manager = rootEditPart.getZoomManager(); double[] zoomLevels = new double[] { 0.25, 0.5, 0.75, 1.0, 1.5, 2.0, 2.5, 3.0, 4.0, 5.0, 10.0, 20.0 }; manager.setZoomLevels(zoomLevels); ArrayList zoomContributions = new ArrayList(); zoomContributions.add(ZoomManager.FIT_ALL); zoomContributions.add(ZoomManager.FIT_HEIGHT); zoomContributions.add(ZoomManager.FIT_WIDTH); manager.setZoomLevelContributions(zoomContributions); getActionRegistry().registerAction(new ZoomInAction(manager)); getActionRegistry().registerAction(new ZoomOutAction(manager)); getGraphicalViewer().setKeyHandler(new GraphicalViewerKeyHandler(getGraphicalViewer())); String menuId = this.getClass().getName() + ".EditorContext"; MenuManager menuMgr = new MenuManager(menuId, menuId); openPropertyAction = new OpenPropertyViewAction(viewer); openOutlineAction = new OpenOutlineViewAction(viewer); saveAsImageAction = new SaveAsImageAction(viewer); createDiagramAction(viewer); getSite().registerContextMenu(menuId, menuMgr, viewer); PrintAction printAction = new PrintAction(this); printAction.setImageDescriptor(UMLPlugin.getImageDescriptor("icons/print.gif")); getActionRegistry().registerAction(printAction); final DeleteAction deleteAction = new DeleteAction((IWorkbenchPart) this); deleteAction.setSelectionProvider(getGraphicalViewer()); getActionRegistry().registerAction(deleteAction); viewer.addSelectionChangedListener(new ISelectionChangedListener() { public void selectionChanged(SelectionChangedEvent event) { deleteAction.update(); } }); menuMgr.add(new Separator("edit")); menuMgr.add(getActionRegistry().getAction(ActionFactory.DELETE.getId())); menuMgr.add(getActionRegistry().getAction(ActionFactory.UNDO.getId())); menuMgr.add(getActionRegistry().getAction(ActionFactory.REDO.getId())); menuMgr.add(new Separator("zoom")); menuMgr.add(getActionRegistry().getAction(GEFActionConstants.ZOOM_IN)); menuMgr.add(getActionRegistry().getAction(GEFActionConstants.ZOOM_OUT)); fillDiagramPopupMenu(menuMgr); menuMgr.add(new Separator("print")); menuMgr.add(saveAsImageAction); menuMgr.add(printAction); menuMgr.add(new Separator("views")); menuMgr.add(openPropertyAction); menuMgr.add(openOutlineAction); menuMgr.add(new Separator("generate")); menuMgr.add(new Separator("additions")); viewer.setContextMenu(menuMgr); viewer.setKeyHandler(new GraphicalViewerKeyHandler(viewer).setParent(getCommonKeyHandler())); } | JSONResponse execute() throws ServerException, RtmApiException, IOException { HttpClient httpclient = new DefaultHttpClient(); URI uri; try { uri = new URI(this.request.getUrl()); HttpPost httppost = new HttpPost(uri); HttpResponse response = httpclient.execute(httppost); InputStream is = response.getEntity().getContent(); try { StringBuilder sb = new StringBuilder(); BufferedReader r = new BufferedReader(new InputStreamReader(new DoneHandlerInputStream(is))); for (String line = r.readLine(); line != null; line = r.readLine()) { sb.append(line); } return new JSONResponse(sb.toString()); } finally { is.close(); } } catch (URISyntaxException e) { throw new RtmApiException(e.getMessage()); } catch (ClientProtocolException e) { throw new RtmApiException(e.getMessage()); } } | 17,999 |
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