label int64 0 1 | func1 stringlengths 173 53.1k | func2 stringlengths 173 53.1k | id int64 0 901k |
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1 | private byte[] getMD5(String string) throws IMException { byte[] buffer = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(string.getBytes("utf-8")); buffer = md.digest(); buffer = getHexString(buffer); } catch (NoSuchAlgorithmException e) { throw new IMException(e); } catch (UnsupportedEncodingException ue) { throw new IMException(ue); } return buffer; } | public static void messageDigestTest() { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update("computer".getBytes()); md.update("networks".getBytes()); System.out.println(new String(md.digest())); System.out.println(new String(md.digest("computernetworks".getBytes()))); } catch (Exception e) { e.printStackTrace(); } } | 886,500 |
0 | public static int gunzipFile(File file_input, File dir_output) { GZIPInputStream gzip_in_stream; try { FileInputStream in = new FileInputStream(file_input); BufferedInputStream source = new BufferedInputStream(in); gzip_in_stream = new GZIPInputStream(source); } catch (IOException e) { return STATUS_IN_FAIL; } String file_input_name = file_input.getName(); String file_output_name = file_input_name.substring(0, file_input_name.length() - 3); File output_file = new File(dir_output, file_output_name); byte[] input_buffer = new byte[BUF_SIZE]; int len = 0; try { FileOutputStream out = new FileOutputStream(output_file); BufferedOutputStream destination = new BufferedOutputStream(out, BUF_SIZE); while ((len = gzip_in_stream.read(input_buffer, 0, BUF_SIZE)) != -1) destination.write(input_buffer, 0, len); destination.flush(); out.close(); } catch (IOException e) { return STATUS_GUNZIP_FAIL; } try { gzip_in_stream.close(); } catch (IOException e) { } return STATUS_OK; } | private void calculateCoverageAndSpecificity(String mainCat) throws IOException, JSONException { for (String cat : Rules.categoryTree.get(mainCat)) { for (String queryString : Rules.queries.get(cat)) { String urlEncodedQueryString = URLEncoder.encode(queryString, "UTF-8"); URL url = new URL("http://boss.yahooapis.com/ysearch/web/v1/" + urlEncodedQueryString + "?appid=" + yahoo_ap_id + "&count=4&format=json&sites=" + site); URLConnection con = url.openConnection(); String line; StringBuilder builder = new StringBuilder(); BufferedReader reader = new BufferedReader(new InputStreamReader(con.getInputStream())); while ((line = reader.readLine()) != null) { builder.append(line); } String response = builder.toString(); JSONObject json = new JSONObject(response); JSONObject jsonObject = json.getJSONObject("ysearchresponse"); String totalhits = jsonObject.getString("totalhits"); long totalhitsLong = Long.parseLong(totalhits); QueryInfo qinfo = new QueryInfo(queryString, totalhitsLong); queryInfoMap.put(queryString, qinfo); cov.put(cat, cov.get(cat) + totalhitsLong); if (totalhitsLong == 0) { continue; } ja = jsonObject.getJSONArray("resultset_web"); for (int j = 0; j < ja.length(); j++) { JSONObject k = ja.getJSONObject(j); String dispurl = filterBold(k.getString("url")); qinfo.addUrl(dispurl); } } } calculateSpecificity(mainCat); } | 886,501 |
1 | public static String createHash(String password) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(password.getBytes()); byte[] digest = md.digest(); return toHexString(digest); } catch (NoSuchAlgorithmException nsae) { System.out.println(nsae.getMessage()); } return ""; } | private String MD5(String text) { try { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } catch (Exception e) { System.out.println(e.toString()); } return null; } | 886,502 |
0 | private static String loadUrlToString(String a_url) throws IOException { URL l_url1 = new URL(a_url); BufferedReader br = new BufferedReader(new InputStreamReader(l_url1.openStream())); String l_content = ""; String l_ligne = null; l_content = br.readLine(); while ((l_ligne = br.readLine()) != null) { l_content += AA.SL + l_ligne; } return l_content; } | static void copy(String src, String dest) throws IOException { File ifp = new File(src); File ofp = new File(dest); if (ifp.exists() == false) { throw new IOException("file '" + src + "' does not exist"); } FileInputStream fis = new FileInputStream(ifp); FileOutputStream fos = new FileOutputStream(ofp); byte[] b = new byte[1024]; while (fis.read(b) > 0) fos.write(b); fis.close(); fos.close(); } | 886,503 |
0 | public static void fileCopy(final File src, final File dest, final boolean overwrite) throws IOException { if (!dest.exists() || (dest.exists() && overwrite)) { final FileChannel srcChannel = new FileInputStream(src).getChannel(); final FileChannel dstChannel = new FileOutputStream(dest).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } } | @Override public void actionPerformed(ActionEvent e) { for (int i = 0; i < 5; i++) { if (e.getSource() == btnNumber[i]) { String password = new String((passwordField.getPassword())); passwordField.setText(password + i); } } if (e.getSource() == btnOK) { String password = new String((passwordField.getPassword())); ResultSet rs; Statement stmt; String sql; String result = ""; boolean checkPassword = false; boolean checkPassword1 = false; boolean checkPassword2 = false; sql = "select password from Usuarios where login='" + login + "'"; try { theConn = DatabaseConnection.getConnection(); stmt = theConn.createStatement(); rs = stmt.executeQuery(sql); while (rs.next()) { result = rs.getString("password"); } rs.close(); stmt.close(); try { Tree tree1 = CreateTree(password, 0); Tree tree2 = CreateTree(password, 1); tree1.enumerateTree(tree1.root); tree2.enumerateTree(tree2.root); for (int i = 0; i < tree1.passwdVector.size(); i++) { MessageDigest messageDigest = MessageDigest.getInstance("SHA1"); messageDigest.update(tree1.passwdVector.get(i).getBytes()); BigInteger bigInt = new BigInteger(1, messageDigest.digest()); String output = bigInt.toString(16); if (output.compareTo(result) == 0) { checkPassword1 = true; break; } else checkPassword1 = false; } for (int i = 0; i < tree2.passwdVector.size(); i++) { MessageDigest messageDigest = MessageDigest.getInstance("SHA1"); messageDigest.update(tree2.passwdVector.get(i).getBytes()); BigInteger bigInt = new BigInteger(1, messageDigest.digest()); String output = bigInt.toString(16); if (output.compareTo(result) == 0) { checkPassword2 = true; break; } else checkPassword2 = false; } if (checkPassword1 == true || checkPassword2 == true) checkPassword = true; else checkPassword = false; } catch (NoSuchAlgorithmException exception) { exception.printStackTrace(); } } catch (Exception exception) { exception.printStackTrace(); } finally { try { if (theConn != null) theConn.close(); } catch (Exception exception) { } } if (checkPassword == true) { JOptionPane.showMessageDialog(null, "senha correta!"); setTries(0); setVisible(false); Error.log(3003, "Senha pessoal verificada positivamente."); Error.log(3002, "Autentica��o etapa 2 encerrada."); PasswordTableWindow ptw = new PasswordTableWindow(login); ptw.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); } else { JOptionPane.showMessageDialog(null, "senha incorreta!"); Error.log(3004, "Senha pessoal verificada negativamente."); int tries = getTries(); if (tries == 0) { Error.log(3005, "Primeiro erro da senha pessoal contabilizado."); } else if (tries == 1) { Error.log(3006, "Segundo erro da senha pessoal contabilizado."); } else if (tries == 2) { Error.log(3007, "Terceiro erro da senha pessoal contabilizado."); Error.log(3008, "Acesso do usuario " + login + " bloqueado pela autentica��o etapa 2."); Error.log(3002, "Autentica��o etapa 2 encerrada."); Error.log(1002, "Sistema encerrado."); setTries(++tries); System.exit(1); } setTries(++tries); } } if (e.getSource() == btnClear) { passwordField.setText(""); } } | 886,504 |
0 | public static Map<VariableLengthInteger, ElementDescriptor> readDescriptors(URL url) throws IOException, XMLStreamException { if (url == null) { throw new IllegalArgumentException("url is null"); } InputStream stream = new BufferedInputStream(url.openStream()); try { return readDescriptors(stream); } finally { try { stream.close(); } catch (IOException ignored) { } } } | @Override public void run() { long timeout = 10 * 1000L; long start = (new Date()).getTime(); try { InputStream is = socket.getInputStream(); boolean available = false; while (!available && !socket.isClosed()) { try { if (is.available() != 0) { available = true; } else { Thread.sleep(100); } } catch (Exception e) { LOG.error("Error checking socket", e); } long curr = (new Date()).getTime(); if ((curr - start) >= timeout) { break; } } if (socket.isClosed()) { } else { ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(is, baos); baos.flush(); baos.close(); data = baos.toByteArray(); } String msg = FtpResponse.ReadComplete.asString() + ClientCommand.SP + "Read Complete" + ClientCommand.CRLF; List<String> list = new ArrayList<String>(); list.add(msg); ClientResponse response = new ClientResponse(list); ftpClient.notifyListeners(response); } catch (Exception e) { LOG.error("Error reading server response", e); } } | 886,505 |
1 | public void write(File file) throws Exception { if (isInMemory()) { FileOutputStream fout = null; try { fout = new FileOutputStream(file); fout.write(get()); } finally { if (fout != null) { fout.close(); } } } else { File outputFile = getStoreLocation(); if (outputFile != null) { size = outputFile.length(); if (!outputFile.renameTo(file)) { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(outputFile)); out = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copy(in, out); } finally { if (in != null) { try { in.close(); } catch (IOException e) { } } if (out != null) { try { out.close(); } catch (IOException e) { } } } } } else { throw new FileUploadException("Cannot write uploaded file to disk!"); } } } | public static void copyZip() { InputStream is; OutputStream os; String javacZip = ""; try { if ("windows".equalsIgnoreCase(Compilador.getSo())) { javacZip = "javacWin.zip"; is = UnZip.class.getResourceAsStream("javacWin.zip"); } else if ("linux".equalsIgnoreCase(Compilador.getSo())) { javacZip = "javacLinux.zip"; is = UnZip.class.getResourceAsStream("javacLinux.zip"); } is = UnZip.class.getResourceAsStream(javacZip); File tempZip = File.createTempFile("tempJavacJTraductor", ".zip"); tempZip.mkdir(); tempZip.deleteOnExit(); os = FileUtils.openOutputStream(tempZip); IOUtils.copy(is, os); is.close(); os.close(); extractZip(tempZip.getPath()); } catch (Exception ex) { JOptionPane.showMessageDialog(PseutemView.mainPanel, "Error al copiar los archivos temporales necesarios para ejecutar el programa:\n\n" + ex, "Error copiando.", JOptionPane.ERROR_MESSAGE); } } | 886,506 |
1 | public static void main(String[] args) { Usage u = new ccngetmeta(); for (int i = 0; i < args.length - 3; i++) { if (!CommonArguments.parseArguments(args, i, u)) { u.usage(); System.exit(1); } if (CommonParameters.startArg > i + 1) i = CommonParameters.startArg - 1; } if (args.length != CommonParameters.startArg + 3) { u.usage(); System.exit(1); } try { int readsize = 1024; CCNHandle handle = CCNHandle.open(); String metaArg = args[CommonParameters.startArg + 1]; if (!metaArg.startsWith("/")) metaArg = "/" + metaArg; ContentName fileName = MetadataProfile.getLatestVersion(ContentName.fromURI(args[CommonParameters.startArg]), ContentName.fromNative(metaArg), CommonParameters.timeout, handle); if (fileName == null) { System.out.println("File " + args[CommonParameters.startArg] + " does not exist"); System.exit(1); } if (VersioningProfile.hasTerminalVersion(fileName)) { } else { System.out.println("File " + fileName + " does not exist... exiting"); System.exit(1); } File theFile = new File(args[CommonParameters.startArg + 2]); if (theFile.exists()) { System.out.println("Overwriting file: " + args[CommonParameters.startArg + 1]); } FileOutputStream output = new FileOutputStream(theFile); long starttime = System.currentTimeMillis(); CCNInputStream input; if (CommonParameters.unversioned) input = new CCNInputStream(fileName, handle); else input = new CCNFileInputStream(fileName, handle); if (CommonParameters.timeout != null) { input.setTimeout(CommonParameters.timeout); } byte[] buffer = new byte[readsize]; int readcount = 0; long readtotal = 0; while ((readcount = input.read(buffer)) != -1) { readtotal += readcount; output.write(buffer, 0, readcount); output.flush(); } if (CommonParameters.verbose) System.out.println("ccngetfile took: " + (System.currentTimeMillis() - starttime) + "ms"); System.out.println("Retrieved content " + args[CommonParameters.startArg + 1] + " got " + readtotal + " bytes."); System.exit(0); } catch (ConfigurationException e) { System.out.println("Configuration exception in ccngetfile: " + e.getMessage()); e.printStackTrace(); } catch (MalformedContentNameStringException e) { System.out.println("Malformed name: " + args[CommonParameters.startArg] + " " + e.getMessage()); e.printStackTrace(); } catch (IOException e) { System.out.println("Cannot write file or read content. " + e.getMessage()); e.printStackTrace(); } System.exit(1); } | public static void copyFile(File src, File dst) throws IOException { BufferedInputStream is = new BufferedInputStream(new FileInputStream(src)); BufferedOutputStream os = new BufferedOutputStream(new FileOutputStream(dst)); byte[] buf = new byte[1024]; int count = 0; while ((count = is.read(buf, 0, 1024)) != -1) os.write(buf, 0, count); is.close(); os.close(); } | 886,507 |
1 | public void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { int maxCount = (64 * 1024 * 1024) - (32 * 1024); long size = inChannel.size(); long position = 0; while (position < size) { position += inChannel.transferTo(position, maxCount, outChannel); } } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 886,508 |
1 | public void saveDraft(org.hibernate.Session hsession, Session session, String repositoryName, int ideIdint, String to, String cc, String bcc, String subject, String body, Vector attachments, boolean isHtml, String charset, InternetHeaders headers, String priority) throws MailException { try { if (charset == null) { charset = MimeUtility.javaCharset(Charset.defaultCharset().displayName()); } if ((body == null) || body.trim().equals("")) { body = " "; } Email email = null; if (isHtml) { email = new HtmlEmail(); } else { email = new MultiPartEmail(); } email.setCharset(charset); Users user = getUser(hsession, repositoryName); Identity identity = getIdentity(hsession, ideIdint, user); InternetAddress _returnPath = new InternetAddress(identity.getIdeEmail(), identity.getIdeName()); InternetAddress _from = new InternetAddress(identity.getIdeEmail(), identity.getIdeName()); InternetAddress _replyTo = new InternetAddress(identity.getIdeReplyTo(), identity.getIdeName()); InternetAddress[] _to = MessageUtilities.encodeAddresses(to, null); InternetAddress[] _cc = MessageUtilities.encodeAddresses(cc, null); InternetAddress[] _bcc = MessageUtilities.encodeAddresses(bcc, null); if (_from != null) { email.setFrom(_from.getAddress(), _from.getPersonal()); } if (_returnPath != null) { email.addHeader("Return-Path", _returnPath.getAddress()); email.addHeader("Errors-To", _returnPath.getAddress()); email.addHeader("X-Errors-To", _returnPath.getAddress()); } if (_replyTo != null) { email.addReplyTo(_replyTo.getAddress(), _replyTo.getPersonal()); } if ((_to != null) && (_to.length > 0)) { HashSet aux = new HashSet(_to.length); Collections.addAll(aux, _to); email.setTo(aux); } if ((_cc != null) && (_cc.length > 0)) { HashSet aux = new HashSet(_cc.length); Collections.addAll(aux, _cc); email.setCc(aux); } if ((_bcc != null) && (_bcc.length > 0)) { HashSet aux = new HashSet(_bcc.length); Collections.addAll(aux, _bcc); email.setBcc(aux); } email.setSubject(subject); Date now = new Date(); email.setSentDate(now); File dir = new File(System.getProperty("user.home") + File.separator + "tmp"); if (!dir.exists()) { dir.mkdir(); } if ((attachments != null) && (attachments.size() > 0)) { for (int i = 0; i < attachments.size(); i++) { ByteArrayInputStream bais = null; FileOutputStream fos = null; try { MailPartObj obj = (MailPartObj) attachments.get(i); File file = new File(dir, obj.getName()); bais = new ByteArrayInputStream(obj.getAttachent()); fos = new FileOutputStream(file); IOUtils.copy(bais, fos); EmailAttachment attachment = new EmailAttachment(); attachment.setPath(file.getPath()); attachment.setDisposition(EmailAttachment.ATTACHMENT); attachment.setDescription("File Attachment: " + file.getName()); attachment.setName(file.getName()); if (email instanceof MultiPartEmail) { ((MultiPartEmail) email).attach(attachment); } } catch (Exception ex) { } finally { IOUtils.closeQuietly(bais); IOUtils.closeQuietly(fos); } } } if (headers != null) { Header xheader; Enumeration xe = headers.getAllHeaders(); for (; xe.hasMoreElements(); ) { xheader = (Header) xe.nextElement(); if (xheader.getName().equals(RFC2822Headers.IN_REPLY_TO)) { email.addHeader(xheader.getName(), xheader.getValue()); } else if (xheader.getName().equals(RFC2822Headers.REFERENCES)) { email.addHeader(xheader.getName(), xheader.getValue()); } } } if (priority != null) { if (priority.equals("high")) { email.addHeader("Importance", priority); email.addHeader("X-priority", "1"); } else if (priority.equals("low")) { email.addHeader("Importance", priority); email.addHeader("X-priority", "5"); } } if (email instanceof HtmlEmail) { ((HtmlEmail) email).setHtmlMsg(body); } else { email.setMsg(body); } email.setMailSession(session); email.buildMimeMessage(); MimeMessage mime = email.getMimeMessage(); int size = MessageUtilities.getMessageSize(mime); if (!controlQuota(hsession, user, size)) { throw new MailException("ErrorMessages.mail.quota.exceded"); } messageable.storeDraftMessage(getId(), mime, user); } catch (MailException e) { throw e; } catch (Exception e) { throw new MailException(e); } catch (java.lang.OutOfMemoryError ex) { System.gc(); throw new MailException(ex); } catch (Throwable e) { throw new MailException(e); } finally { GeneralOperations.closeHibernateSession(hsession); } } | public static String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); System.out.println("test"); URL url = new URL(addr); System.out.println("test2"); IOUtils.copy(url.openStream(), output); return output.toString(); } | 886,509 |
1 | private static void copyFile(File sourceFile, File destFile) throws IOException { System.out.println(sourceFile.getAbsolutePath()); System.out.println(destFile.getAbsolutePath()); FileChannel source = new FileInputStream(sourceFile).getChannel(); try { FileChannel destination = new FileOutputStream(destFile).getChannel(); try { destination.transferFrom(source, 0, source.size()); } finally { if (destination != null) { destination.close(); } } } finally { source.close(); } } | protected void copy(File src, File dest) throws IOException { if (src.isDirectory() && dest.isFile()) throw new IOException("Cannot copy a directory to a file"); if (src.isDirectory()) { File newDir = new File(dest, src.getName()); if (!newDir.mkdirs()) throw new IOException("Cannot create a new Directory"); File[] entries = src.listFiles(); for (int i = 0; i < entries.length; ++i) copy(entries[i], newDir); return; } if (dest.isDirectory()) { File newFile = new File(dest, src.getName()); newFile.createNewFile(); copy(src, newFile); return; } try { if (src.length() == 0) { dest.createNewFile(); return; } FileChannel fc = new FileInputStream(src).getChannel(); FileChannel dstChannel = new FileOutputStream(dest).getChannel(); long transfered = 0; long totalLength = src.length(); while (transfered < totalLength) { long num = fc.transferTo(transfered, totalLength - transfered, dstChannel); if (num == 0) throw new IOException("Error while copying"); transfered += num; } dstChannel.close(); fc.close(); } catch (IOException e) { if (os.equals("Unix")) { _logger.fine("Trying to use cp to copy file..."); File cp = new File("/usr/bin/cp"); if (!cp.exists()) cp = new File("/bin/cp"); if (!cp.exists()) cp = new File("/usr/local/bin/cp"); if (!cp.exists()) cp = new File("/sbin/cp"); if (!cp.exists()) cp = new File("/usr/sbin/cp"); if (!cp.exists()) cp = new File("/usr/local/sbin/cp"); if (cp.exists()) { Process cpProcess = Runtime.getRuntime().exec(cp.getAbsolutePath() + " '" + src.getAbsolutePath() + "' '" + dest.getAbsolutePath() + "'"); int errCode; try { errCode = cpProcess.waitFor(); } catch (java.lang.InterruptedException ie) { throw e; } return; } } throw e; } } | 886,510 |
1 | public static void copyFile(String fromFilePath, String toFilePath, boolean overwrite) throws IOException { File fromFile = new File(fromFilePath); File toFile = new File(toFilePath); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFilePath); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFilePath); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFilePath); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!overwrite) { throw new IOException(toFilePath + " already exists!"); } if (!toFile.canWrite()) { throw new IOException("FileCopy: destination file is unwriteable: " + toFilePath); } String parent = toFile.getParent(); if (parent == null) { parent = System.getProperty("user.dir"); } File dir = new File(parent); if (!dir.exists()) { throw new IOException("FileCopy: destination directory doesn't exist: " + parent); } if (dir.isFile()) { throw new IOException("FileCopy: destination is not a directory: " + parent); } if (!dir.canWrite()) { throw new IOException("FileCopy: destination directory is unwriteable: " + parent); } } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { long lastModified = fromFile.lastModified(); toFile.setLastModified(lastModified); if (from != null) { try { from.close(); } catch (IOException e) { } } if (to != null) { try { to.close(); } catch (IOException e) { } } } } | private boolean createPKCReqest(String keystoreLocation, String pw) { boolean created = false; Security.addProvider(new BouncyCastleProvider()); KeyStore ks = null; try { ks = KeyStore.getInstance(KeyStore.getDefaultType()); ks.load(new BufferedInputStream(new FileInputStream(keystoreLocation)), pw.toCharArray()); } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading keystore file when creating PKC request: " + e.getMessage()); } return false; } Certificate cert = null; try { cert = ks.getCertificate("saws"); } catch (KeyStoreException e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading certificate from keystore file when creating PKC request: " + e.getMessage()); } return false; } PKCS10CertificationRequest request = null; PublicKey pk = cert.getPublicKey(); try { request = new PKCS10CertificationRequest("SHA1with" + pk.getAlgorithm(), new X500Principal(((X509Certificate) cert).getSubjectDN().toString()), pk, new DERSet(), (PrivateKey) ks.getKey("saws", pw.toCharArray())); PEMWriter pemWrt = new PEMWriter(new OutputStreamWriter(new FileOutputStream("sawsRequest.csr"))); pemWrt.writeObject(request); pemWrt.close(); created = true; } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error creating PKC request file: " + e.getMessage()); } return false; } return created; } | 886,511 |
1 | public static String getHash(String text) { if (text == null) return null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(text.getBytes()); byte[] hashedTextBytes = md.digest(); BigInteger hashedTextBigInteger = new BigInteger(1, hashedTextBytes); String hashedTextString = hashedTextBigInteger.toString(16); return hashedTextString; } catch (NoSuchAlgorithmException e) { LOG.warning(e.toString()); return null; } } | public synchronized String encrypt(String plaintext) throws ServiceUnavailableException { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { throw new ServiceUnavailableException(e.getMessage()); } try { md.reset(); md.update(plaintext.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { throw new ServiceUnavailableException(e.getMessage()); } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | 886,512 |
1 | private static void salvarCategoria(Categoria categoria) throws Exception { Connection conn = null; PreparedStatement ps = null; try { conn = C3P0Pool.getConnection(); String sql = "insert into categoria VALUES (?,?)"; ps = conn.prepareStatement(sql); ps.setNull(1, Types.INTEGER); ps.setString(2, categoria.getNome()); ps.executeUpdate(); conn.commit(); } catch (Exception e) { if (conn != null) conn.rollback(); throw e; } finally { close(conn, ps); } } | public synchronized void insertMessage(FrostUnsentMessageObject mo) throws SQLException { AttachmentList files = mo.getAttachmentsOfType(Attachment.FILE); AttachmentList boards = mo.getAttachmentsOfType(Attachment.BOARD); Connection conn = AppLayerDatabase.getInstance().getPooledConnection(); try { conn.setAutoCommit(false); PreparedStatement ps = conn.prepareStatement("INSERT INTO UNSENDMESSAGES (" + "primkey,messageid,inreplyto,board,sendafter,idlinepos,idlinelen,fromname,subject,recipient,msgcontent," + "hasfileattachment,hasboardattachment,timeAdded" + ") VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?)"); Long identity = null; Statement stmt = AppLayerDatabase.getInstance().createStatement(); ResultSet rs = stmt.executeQuery("select UNIQUEKEY('UNSENDMESSAGES')"); if (rs.next()) { identity = new Long(rs.getLong(1)); } else { logger.log(Level.SEVERE, "Could not retrieve a new unique key!"); } rs.close(); stmt.close(); mo.setMsgIdentity(identity.longValue()); int i = 1; ps.setLong(i++, mo.getMsgIdentity()); ps.setString(i++, mo.getMessageId()); ps.setString(i++, mo.getInReplyTo()); ps.setInt(i++, mo.getBoard().getPrimaryKey().intValue()); ps.setLong(i++, 0); ps.setInt(i++, mo.getIdLinePos()); ps.setInt(i++, mo.getIdLineLen()); ps.setString(i++, mo.getFromName()); ps.setString(i++, mo.getSubject()); ps.setString(i++, mo.getRecipientName()); ps.setString(i++, mo.getContent()); ps.setBoolean(i++, (files.size() > 0)); ps.setBoolean(i++, (boards.size() > 0)); ps.setLong(i++, mo.getTimeAdded()); int inserted = 0; try { inserted = ps.executeUpdate(); } finally { ps.close(); } if (inserted == 0) { logger.log(Level.SEVERE, "message insert returned 0 !!!"); return; } mo.setMsgIdentity(identity.longValue()); if (files.size() > 0) { PreparedStatement p = conn.prepareStatement("INSERT INTO UNSENDFILEATTACHMENTS" + " (msgref,filename,filesize,filekey)" + " VALUES (?,?,?,?)"); for (Iterator it = files.iterator(); it.hasNext(); ) { FileAttachment fa = (FileAttachment) it.next(); int ix = 1; p.setLong(ix++, mo.getMsgIdentity()); p.setString(ix++, fa.getInternalFile().getPath()); p.setLong(ix++, fa.getFileSize()); p.setString(ix++, fa.getKey()); int ins = p.executeUpdate(); if (ins == 0) { logger.log(Level.SEVERE, "fileattachment insert returned 0 !!!"); } } p.close(); } if (boards.size() > 0) { PreparedStatement p = conn.prepareStatement("INSERT INTO UNSENDBOARDATTACHMENTS" + " (msgref,boardname,boardpublickey,boardprivatekey,boarddescription)" + " VALUES (?,?,?,?,?)"); for (Iterator it = boards.iterator(); it.hasNext(); ) { BoardAttachment ba = (BoardAttachment) it.next(); Board b = ba.getBoardObj(); int ix = 1; p.setLong(ix++, mo.getMsgIdentity()); p.setString(ix++, b.getNameLowerCase()); p.setString(ix++, b.getPublicKey()); p.setString(ix++, b.getPrivateKey()); p.setString(ix++, b.getDescription()); int ins = p.executeUpdate(); if (ins == 0) { logger.log(Level.SEVERE, "boardattachment insert returned 0 !!!"); } } p.close(); } conn.commit(); conn.setAutoCommit(true); } catch (Throwable t) { logger.log(Level.SEVERE, "Exception during insert of unsent message", t); try { conn.rollback(); } catch (Throwable t1) { logger.log(Level.SEVERE, "Exception during rollback", t1); } try { conn.setAutoCommit(true); } catch (Throwable t1) { } } finally { AppLayerDatabase.getInstance().givePooledConnection(conn); } } | 886,513 |
0 | public static void main(String[] args) { try { File fichierXSD = new File("D:/Users/Balley/données/gml/commune.xsd"); URL urlFichierXSD = fichierXSD.toURI().toURL(); InputStream isXSD = urlFichierXSD.openStream(); DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance(); DocumentBuilder builder = dbFactory.newDocumentBuilder(); Document documentXSD = (builder.parse(isXSD)); ChargeurGMLSchema chargeur = new ChargeurGMLSchema(documentXSD); SchemaConceptuelJeu sc = chargeur.gmlSchema2schemaConceptuel(documentXSD); System.out.println(sc.getFeatureTypes().size()); for (int i = 0; i < sc.getFeatureTypes().size(); i++) { System.out.println(sc.getFeatureTypes().get(i).getTypeName()); for (int j = 0; j < sc.getFeatureTypes().get(i).getFeatureAttributes().size(); j++) { System.out.println(" " + sc.getFeatureTypes().get(i).getFeatureAttributes().get(j).getMemberName() + " : " + sc.getFeatureTypes().get(i).getFeatureAttributes().get(j).getValueType()); } } } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (ParserConfigurationException e) { e.printStackTrace(); } catch (SAXException e) { e.printStackTrace(); } } | public boolean openInputStream() throws Exception { open = false; if (filename == null) return false; try { url = new URL(filename); con = url.openConnection(); con.connect(); lengthOfData = con.getContentLength(); System.out.println(" headers for url: " + url); System.out.println(" lengthOfData = " + lengthOfData); Map m = con.getHeaderFields(); Set s = m.keySet(); Iterator i = s.iterator(); while (i.hasNext()) { String x = (String) i.next(); Object o = m.get(x); String y = null; if (o instanceof String) y = (String) o; else if (o instanceof Collection) y = "" + (Collection) o; else if (o instanceof Integer) y = "" + (Integer) o; else y = o.getClass().getName(); System.out.println(" header " + x + " = " + y); } infile = new DataInputStream(con.getInputStream()); } catch (Exception e) { e.printStackTrace(); throw e; } open = true; count = 0; countLastRead = 0; return true; } | 886,514 |
0 | protected void convertInternal(InputStream inputStream, DocumentFormat inputFormat, OutputStream outputStream, DocumentFormat outputFormat) { File inputFile = null; File outputFile = null; try { inputFile = File.createTempFile("document", "." + inputFormat.getFileExtension()); OutputStream inputFileStream = null; try { inputFileStream = new FileOutputStream(inputFile); IOUtils.copy(inputStream, inputFileStream); } finally { IOUtils.closeQuietly(inputFileStream); } outputFile = File.createTempFile("document", "." + outputFormat.getFileExtension()); convert(inputFile, inputFormat, outputFile, outputFormat); InputStream outputFileStream = null; try { outputFileStream = new FileInputStream(outputFile); IOUtils.copy(outputFileStream, outputStream); } finally { IOUtils.closeQuietly(outputFileStream); } } catch (IOException ioException) { throw new OpenOfficeException("conversion failed", ioException); } finally { if (inputFile != null) { inputFile.delete(); } if (outputFile != null) { outputFile.delete(); } } } | @Override public String encryptPassword(String password) throws JetspeedSecurityException { if (securePasswords == false) { return password; } if (password == null) { return null; } try { if ("SHA-512".equals(passwordsAlgorithm)) { password = password + JetspeedResources.getString("aipo.encrypt_key"); MessageDigest md = MessageDigest.getInstance(passwordsAlgorithm); md.reset(); md.update(password.getBytes()); byte[] hash = md.digest(); StringBuffer sb = new StringBuffer(); for (int i = 0; i < hash.length; i++) { sb.append(Integer.toHexString((hash[i] >> 4) & 0x0F)); sb.append(Integer.toHexString(hash[i] & 0x0F)); } return sb.toString(); } else { MessageDigest md = MessageDigest.getInstance(passwordsAlgorithm); byte[] digest = md.digest(password.getBytes(ALEipConstants.DEF_CONTENT_ENCODING)); ByteArrayOutputStream bas = new ByteArrayOutputStream(digest.length + digest.length / 3 + 1); OutputStream encodedStream = MimeUtility.encode(bas, "base64"); encodedStream.write(digest); encodedStream.flush(); encodedStream.close(); return bas.toString(); } } catch (Exception e) { logger.error("Unable to encrypt password." + e.getMessage(), e); return null; } } | 886,515 |
1 | @Override public void handle(String s, HttpServletRequest httpServletRequest, HttpServletResponse httpServletResponse, int i) throws IOException, ServletException { expected = new StringBuilder(); System.out.println("uri: " + httpServletRequest.getRequestURI()); System.out.println("queryString: " + (queryString = httpServletRequest.getQueryString())); System.out.println("method: " + httpServletRequest.getMethod()); ByteArrayOutputStream baos = new ByteArrayOutputStream(); IOUtils.copy(httpServletRequest.getInputStream(), baos); System.out.println("body: " + (body = baos.toString())); PrintWriter writer = httpServletResponse.getWriter(); writer.append("testsvar"); expected.append("testsvar"); Random r = new Random(); for (int j = 0; j < 10; j++) { int value = r.nextInt(Integer.MAX_VALUE); writer.append(value + ""); expected.append(value); } System.out.println(); writer.close(); httpServletResponse.setStatus(HttpServletResponse.SC_OK); } | public static File jar(File in, String outArc, File tempDir, PatchConfigXML conf) { FileOutputStream arcFile = null; JarOutputStream jout = null; DirectoryScanner ds = null; ds = new DirectoryScanner(); ds.setCaseSensitive(true); ds.setBasedir(in); ds.scan(); ds.setCaseSensitive(true); String[] names = ds.getIncludedFiles(); ArrayList exName = new ArrayList(); if (names == null || names.length < 1) return null; File tempArc = new File(tempDir, outArc.substring(0, outArc.length())); try { Manifest mf = null; List v = new ArrayList(); for (int i = 0; i < names.length; i++) { if (names[i].toUpperCase().indexOf("MANIFEST.MF") > -1) { FileInputStream fis = new FileInputStream(in.getAbsolutePath() + "/" + names[i].replace('\\', '/')); mf = new Manifest(fis); } else v.add(names[i]); } String[] toJar = new String[v.size()]; v.toArray(toJar); tempArc.createNewFile(); arcFile = new FileOutputStream(tempArc); if (mf == null) jout = new JarOutputStream(arcFile); else jout = new JarOutputStream(arcFile, mf); byte[] buffer = new byte[1024]; for (int i = 0; i < toJar.length; i++) { if (conf != null) { if (!conf.allowFileAction(toJar[i], PatchConfigXML.OP_CREATE)) { exName.add(toJar[i]); continue; } } String currentPath = in.getAbsolutePath() + "/" + toJar[i]; String entryName = toJar[i].replace('\\', '/'); JarEntry currentEntry = new JarEntry(entryName); jout.putNextEntry(currentEntry); FileInputStream fis = new FileInputStream(currentPath); int len; while ((len = fis.read(buffer)) >= 0) jout.write(buffer, 0, len); fis.close(); jout.closeEntry(); } } catch (IOException e) { throw new RuntimeException(e); } finally { try { jout.close(); arcFile.close(); } catch (IOException e1) { throw new RuntimeException(e1); } } return tempArc; } | 886,516 |
0 | public static void copyFile1(File srcFile, File destFile) throws IOException { if(!destFile.exists()) { destFile.createNewFile(); } FileInputStream fis = new FileInputStream(srcFile); FileOutputStream fos = new FileOutputStream(destFile); FileChannel source = fis.getChannel(); FileChannel destination = fos.getChannel(); destination.transferFrom(source, 0, source.size()); source.close(); destination.close(); fis.close(); fos.close(); } | public void insertUser(final User user) throws IOException { try { Connection conn = null; boolean autoCommit = false; try { conn = pool.getConnection(); autoCommit = conn.getAutoCommit(); conn.setAutoCommit(false); final PreparedStatement insertUser = conn.prepareStatement("insert into users (userId, mainRoleId) values (?,?)"); log.finest("userId= " + user.getUserId()); insertUser.setString(1, user.getUserId()); log.finest("mainRole= " + user.getMainRole().getId()); insertUser.setInt(2, user.getMainRole().getId()); insertUser.executeUpdate(); final PreparedStatement insertRoles = conn.prepareStatement("insert into userRoles (userId, roleId) values (?,?)"); for (final Role role : user.getRoles()) { insertRoles.setString(1, user.getUserId()); insertRoles.setInt(2, role.getId()); insertRoles.executeUpdate(); } conn.commit(); } catch (Throwable t) { if (conn != null) conn.rollback(); log.log(Level.SEVERE, t.toString(), t); throw new SQLException(t.toString()); } finally { if (conn != null) { conn.setAutoCommit(autoCommit); conn.close(); } } } catch (final SQLException sqle) { log.log(Level.SEVERE, sqle.toString(), sqle); throw new IOException(sqle.toString()); } } | 886,517 |
1 | public static String Sha1(String s) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); byte[] hash = new byte[40]; md.update(s.getBytes("iso-8859-1"), 0, s.length()); hash = md.digest(); return toHex(hash); } catch (Exception e) { e.printStackTrace(); return null; } } | public static final String getUniqueId() { String digest = ""; try { MessageDigest md = MessageDigest.getInstance("MD5"); String timeVal = "" + (System.currentTimeMillis() + 1); String localHost = ""; try { localHost = InetAddress.getLocalHost().toString(); } catch (UnknownHostException e) { throw new RuntimeException("Error trying to get localhost" + e.getMessage()); } String randVal = "" + new Random().nextInt(); String val = timeVal + localHost + randVal; md.reset(); md.update(val.getBytes()); digest = toHexString(md.digest()); } catch (NoSuchAlgorithmException e) { throw new RuntimeException("NoSuchAlgorithmException : " + e.getMessage()); } return digest; } | 886,518 |
1 | public static void copyFile(File from, File to) throws FileNotFoundException, IOException { requireFile(from); requireFile(to); if (to.isDirectory()) { to = new File(to, getFileName(from)); } FileChannel sourceChannel = new FileInputStream(from).getChannel(); FileChannel destinationChannel = new FileOutputStream(to).getChannel(); destinationChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); sourceChannel.close(); destinationChannel.close(); } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,519 |
0 | public static int validate(String url) { HttpURLConnection con = null; try { con = (HttpURLConnection) (new URL(url)).openConnection(); } catch (MalformedURLException ex) { return -1; } catch (IOException ex) { return -2; } try { if (con != null && con.getResponseCode() != 200) { return con.getResponseCode(); } else if (con == null) { return -3; } } catch (IOException ex) { return -4; } return 1; } | private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } | 886,520 |
0 | public static String SHA512(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-512"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("UTF-8"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | private static void doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { throw new IOException("Destination '" + destFile + "' exists but is a directory"); } FileChannel input = new FileInputStream(srcFile).getChannel(); try { FileChannel output = new FileOutputStream(destFile).getChannel(); try { output.transferFrom(input, 0, input.size()); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } } | 886,521 |
0 | public void downloadFile(OutputStream os, int fileId) throws IOException, SQLException { Connection conn = null; try { conn = ds.getConnection(); Guard.checkConnectionNotNull(conn); PreparedStatement ps = conn.prepareStatement("select * from FILE_BODIES where file_id=?"); ps.setInt(1, fileId); ResultSet rs = ps.executeQuery(); if (!rs.next()) { throw new FileNotFoundException("File with id=" + fileId + " not found!"); } Blob blob = rs.getBlob("data"); InputStream is = blob.getBinaryStream(); IOUtils.copyLarge(is, os); } finally { JdbcDaoHelper.safeClose(conn, log); } } | public void serveResource(HTTPResource resource, HttpServletRequest request, HttpServletResponse response) throws IOException { JavaScriptResource jsr = (JavaScriptResource) resource; response.setContentType("text/javascript"); if (jsr.getScriptText() != null) { PrintWriter pw = response.getWriter(); pw.println(jsr.getScriptText()); } else if (jsr.getResourceName() != null) { URL url = ClassLoaderUtil.getResource(jsr.getResourceName()); IOUtil.copyData(response.getOutputStream(), url.openStream()); } else { throw new IOException("No Javascript to Serve"); } } | 886,522 |
1 | public static Properties addAttributes(Node node, String[] names, Properties props, LogEvent evt) throws ConfigurationException { if (props == null) props = new Properties(); try { MessageDigest md = MessageDigest.getInstance("MD5"); for (int i = 0; i < names.length; i++) { String value = addProperty(names[i], props, node, evt); if (value != null) { md.update(names[i].getBytes()); md.update(value.getBytes()); } } byte[] digest = md.digest(); evt.addMessage("digest " + ISOUtil.hexString(digest)); props.put(DIGEST_PROPERTY, digest); } catch (NoSuchAlgorithmException e) { throw new ConfigurationException(e); } return props; } | public static byte[] gerarHash(String frase) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(frase.getBytes()); return md.digest(); } catch (NoSuchAlgorithmException e) { return null; } } | 886,523 |
0 | public int update(BusinessObject o) throws DAOException { int update = 0; Account acc = (Account) o; try { PreparedStatement pst = connection.prepareStatement(XMLGetQuery.getQuery("UPDATE_ACCOUNT")); pst.setString(1, acc.getName()); pst.setString(2, acc.getAddress()); pst.setInt(3, acc.getCurrency()); pst.setInt(4, acc.getMainContact()); pst.setBoolean(5, acc.isArchived()); pst.setInt(6, acc.getId()); update = pst.executeUpdate(); if (update <= 0) { connection.rollback(); throw new DAOException("Number of rows <= 0"); } else if (update > 1) { connection.rollback(); throw new DAOException("Number of rows > 1"); } connection.commit(); } catch (SQLException e) { Log.write(e.getMessage()); throw new DAOException("A SQLException has occured"); } catch (NullPointerException npe) { Log.write(npe.getMessage()); throw new DAOException("Connection null"); } return update; } | public MpegPresentation(URL url) throws IOException { File file = new File(url.getPath()); InputStream input = url.openStream(); DataInputStream ds = new DataInputStream(input); try { parseFile(ds); prepareTracks(); if (audioTrackBox != null && audioHintTrackBox != null) { audioTrack = new AudioTrack(audioTrackBox, audioHintTrackBox, file); } if (videoTrackBox != null && videoHintTrackBox != null) { videoTrack = new VideoTrack(videoTrackBox, videoHintTrackBox, file); } } finally { ds.close(); input.close(); } } | 886,524 |
0 | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String pathInfo = req.getPathInfo(); String pluginPathInfo = pathInfo.substring(prefix.length()); String gwtPathInfo = pluginPathInfo.substring(pluginKey.length() + 1); String clPath = CLASSPATH_PREFIX + gwtPathInfo; InputStream input = cl.getResourceAsStream(clPath); if (input != null) { try { OutputStream output = resp.getOutputStream(); IOUtils.copy(input, output); } finally { input.close(); } } else { resp.sendError(HttpServletResponse.SC_NOT_FOUND); } } | public synchronized String encrypt(String plaintext) throws SystemUnavailableException { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new SystemUnavailableException(e.getMessage()); } try { md.update(plaintext.getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { throw new SystemUnavailableException(e.getMessage()); } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; } | 886,525 |
0 | public InputStream sendCommandRaw(String command, boolean usePost) throws IOException { try { String fullCommand = prefix + command + fixSuffix(command, suffix); long curGap = System.currentTimeMillis() - lastCommandTime; long delayTime = minimumCommandPeriod - curGap; delay(delayTime); URI uri = new URI(fullCommand); URL url = uri.toURL(); if (trace || traceSends) { System.out.println("Sending--> " + url); } if (logFile != null) { logFile.println("Sending--> " + url); } InputStream is = null; for (int i = 0; i < tryCount; i++) { try { URLConnection urc = url.openConnection(); if (usePost) { if (urc instanceof HttpURLConnection) { ((HttpURLConnection) urc).setRequestMethod("POST"); } } if (getTimeout() != -1) { urc.setReadTimeout(getTimeout()); urc.setConnectTimeout(getTimeout()); } is = new BufferedInputStream(urc.getInputStream()); break; } catch (FileNotFoundException e) { throw e; } catch (IOException e) { System.out.println(name + " Error: " + e + " cmd: " + command); } } lastCommandTime = System.currentTimeMillis(); if (is == null) { System.out.println(name + " retry failure cmd: " + url); throw new IOException("Can't send command"); } return is; } catch (URISyntaxException ex) { throw new IOException("bad uri " + ex); } } | private String md5(String txt) { try { MessageDigest m = MessageDigest.getInstance("MD5"); m.update(txt.getBytes(), 0, txt.length()); return new BigInteger(1, m.digest()).toString(16); } catch (Exception e) { return "BAD MD5"; } } | 886,526 |
1 | public void delete(Connection conn, boolean commit) throws SQLException { PreparedStatement stmt = null; if (isNew()) { String errorMessage = "Unable to delete non-persistent DAO '" + getClass().getName() + "'"; if (log.isErrorEnabled()) { log.error(errorMessage); } throw new SQLException(errorMessage); } try { stmt = conn.prepareStatement(getDeleteSql()); stmt.setObject(1, getPrimaryKey()); int rowCount = stmt.executeUpdate(); if (rowCount != 1) { if (commit) { conn.rollback(); } String errorMessage = "Invalid number of rows changed!"; if (log.isErrorEnabled()) { log.error(errorMessage); } throw new SQLException(errorMessage); } else if (commit) { conn.commit(); } } finally { OvJdbcUtils.closeStatement(stmt); } } | private void transferir() { PreparedStatement ps = null; StringBuilder sql = new StringBuilder(); boolean problema = false; String idFk = ""; try { for (String tabela : tabelas) { idFk = mapaTabelas.get(tabela); sql.delete(0, sql.length()); sql.append("UPDATE "); sql.append(tabela); sql.append(" SET"); sql.append(" CODEMP" + idFk + "=?,"); sql.append(" CODFILIAL" + idFk + "=?,"); sql.append(" CODPLAN=?"); sql.append(" WHERE"); sql.append(" CODEMP" + idFk + "=? AND"); sql.append(" CODFILIAL" + idFk + "=? AND"); sql.append(" CODPLAN=?"); try { status.setText("Atulizando tabela " + tabela); ps = con.prepareStatement(sql.toString()); ps.setInt(1, Aplicativo.iCodEmp); ps.setInt(2, lcPlanDest.getCodFilial()); ps.setString(3, txtCodPlanDest.getVlrString()); ps.setInt(4, Aplicativo.iCodEmp); ps.setInt(5, lcPlanOrig.getCodFilial()); ps.setString(6, txtCodPlanOrig.getVlrString()); ps.executeUpdate(); } catch (SQLException e) { e.printStackTrace(); problema = true; Funcoes.mensagemErro(this, "Erro ao atualizar planejamento de destino.\n" + e.getMessage(), true, con, e); status.setText(""); break; } } } finally { try { if (problema) { con.rollback(); } else { sql.delete(0, sql.length()); sql.append("DELETE FROM FNSALDOLANCA "); sql.append("WHERE CODEMPPN=? AND CODFILIALPN=? AND CODPLAN=?"); ps = con.prepareStatement(sql.toString()); ps.setInt(1, Aplicativo.iCodEmp); ps.setInt(2, lcPlanOrig.getCodFilial()); ps.setString(3, txtCodPlanOrig.getVlrString()); ps.executeUpdate(); con.commit(); btTransferir.setEnabled(false); status.setText("Transfer�ncia completada."); } } catch (SQLException e) { e.printStackTrace(); } } } | 886,527 |
1 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | public static void main(String[] args) throws IOException { System.out.println("Start filtering zgps..."); final Config config = ConfigUtils.loadConfig(args[0]); final String CONFIG_MODULE = "GPSFilterZGPS"; File sourceFileSelectedStages = new File(config.findParam(CONFIG_MODULE, "sourceFileSelectedStages")); File sourceFileZGPS = new File(config.findParam(CONFIG_MODULE, "sourceFileZGPS")); File targetFile = new File(config.findParam(CONFIG_MODULE, "targetFile")); System.out.println("Start reading selected stages..."); FilterZGPSSelectedStages selectedStages = new FilterZGPSSelectedStages(); selectedStages.createSelectedStages(sourceFileSelectedStages); System.out.println("Done. " + selectedStages.getSelectedStages().size() + " stages were stored"); System.out.println("Start reading and writing zgps..."); try { BufferedReader in = new BufferedReader(new InputStreamReader(new FileInputStream(sourceFileZGPS))); BufferedWriter out = new BufferedWriter(new FileWriter(targetFile)); out.write(in.readLine()); out.newLine(); String lineFromInputFile; while ((lineFromInputFile = in.readLine()) != null) { String[] entries = lineFromInputFile.split("\t"); if (selectedStages.containsStage(Integer.parseInt(entries[0]), Integer.parseInt(entries[1]), Integer.parseInt(entries[2]))) { out.write(lineFromInputFile); out.newLine(); out.flush(); } } in.close(); out.close(); } catch (FileNotFoundException e) { System.out.println("Could not find source file for selected stages."); e.printStackTrace(); } catch (IOException e) { System.out.println("IO Exception while reading or writing zgps."); e.printStackTrace(); } System.out.println("Done."); } | 886,528 |
0 | public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } | public SWORDEntry ingestDepost(final DepositCollection pDeposit, final ServiceDocument pServiceDocument) throws SWORDException { try { ZipFileAccess tZipFile = new ZipFileAccess(super.getTempDir()); LOG.debug("copying file"); String tZipTempFileName = super.getTempDir() + "uploaded-file.tmp"; IOUtils.copy(pDeposit.getFile(), new FileOutputStream(tZipTempFileName)); Datastream tDatastream = new LocalDatastream(super.getGenericFileName(pDeposit), this.getContentType(), tZipTempFileName); _datastreamList.add(tDatastream); _datastreamList.addAll(tZipFile.getFiles(tZipTempFileName)); int i = 0; boolean found = false; for (i = 0; i < _datastreamList.size(); i++) { if (_datastreamList.get(i).getId().equalsIgnoreCase("mets")) { found = true; break; } } if (found) { SAXBuilder tBuilder = new SAXBuilder(); _mets = new METSObject(tBuilder.build(((LocalDatastream) _datastreamList.get(i)).getPath())); LocalDatastream tLocalMETSDS = (LocalDatastream) _datastreamList.remove(i); new File(tLocalMETSDS.getPath()).delete(); _datastreamList.add(_mets.getMETSDs()); _datastreamList.addAll(_mets.getMetadataDatastreams()); } else { throw new SWORDException("Couldn't find a METS document in the zip file, ensure it is named mets.xml or METS.xml"); } SWORDEntry tEntry = super.ingestDepost(pDeposit, pServiceDocument); tZipFile.removeLocalFiles(); return tEntry; } catch (IOException tIOExcpt) { String tMessage = "Couldn't retrieve METS from deposit: " + tIOExcpt.toString(); LOG.error(tMessage); tIOExcpt.printStackTrace(); throw new SWORDException(tMessage, tIOExcpt); } catch (JDOMException tJDOMExcpt) { String tMessage = "Couldn't build METS from deposit: " + tJDOMExcpt.toString(); LOG.error(tMessage); tJDOMExcpt.printStackTrace(); throw new SWORDException(tMessage, tJDOMExcpt); } } | 886,529 |
1 | public void xtest11() throws Exception { PDFManager manager = new ITextManager(); InputStream pdf = new FileInputStream("/tmp/UML2.pdf"); InputStream page1 = manager.cut(pdf, 1, 1); OutputStream outputStream = new FileOutputStream("/tmp/page.pdf"); IOUtils.copy(page1, outputStream); outputStream.close(); pdf.close(); } | public static void extractFile(String jarArchive, String fileToExtract, String destination) { FileWriter writer = null; ZipInputStream zipStream = null; try { FileInputStream inputStream = new FileInputStream(jarArchive); BufferedInputStream bufferedStream = new BufferedInputStream(inputStream); zipStream = new ZipInputStream(bufferedStream); writer = new FileWriter(new File(destination)); ZipEntry zipEntry = null; while ((zipEntry = zipStream.getNextEntry()) != null) { if (zipEntry.getName().equals(fileToExtract)) { int size = (int) zipEntry.getSize(); for (int i = 0; i < size; i++) { writer.write(zipStream.read()); } } } } catch (IOException e) { e.printStackTrace(); } finally { if (zipStream != null) try { zipStream.close(); } catch (IOException e) { e.printStackTrace(); } if (writer != null) try { writer.close(); } catch (IOException e) { e.printStackTrace(); } } } | 886,530 |
0 | private static void tryToMerge(String url) { if ("none".equalsIgnoreCase(url)) return; Properties nullProps = new Properties(); FileProperties propsIn = new FileProperties(nullProps, nullProps); try { propsIn.load(new URL(url).openStream()); } catch (Exception e) { } if (propsIn.isEmpty()) return; for (Iterator i = propsIn.entrySet().iterator(); i.hasNext(); ) { Map.Entry e = (Map.Entry) i.next(); String propKey = ((String) e.getKey()).trim(); if (!propKey.startsWith(MERGE_PROP_PREFIX)) continue; String settingName = propKey.substring(MERGE_PROP_PREFIX.length()); if (getVal(settingName) == null) { String settingVal = ((String) e.getValue()).trim(); set(settingName, settingVal); } } } | public static boolean copyFile(File src, File dest) throws IOException { if (src == null) { throw new IllegalArgumentException("src == null"); } if (dest == null) { throw new IllegalArgumentException("dest == null"); } if (!src.isFile()) { return false; } FileChannel in = new FileInputStream(src).getChannel(); FileChannel out = new FileOutputStream(dest).getChannel(); try { in.transferTo(0, in.size(), out); return true; } catch (IOException e) { throw e; } finally { if (in != null) { in.close(); } if (out != null) { out.close(); } } } | 886,531 |
0 | public void deleteMessageBuffer(String messageBufferName) throws AppFabricException { MessageBufferUtil msgBufferUtilObj = new MessageBufferUtil(solutionName, TokenConstants.getSimpleAuthAuthenticationType()); String requestUri = msgBufferUtilObj.getRequestUri(); String messageBufferUri = msgBufferUtilObj.getCreateMessageBufferUri(messageBufferName); String authorizationToken = ""; try { ACSTokenProvider tp = new ACSTokenProvider(httpWebProxyServer_, httpWebProxyPort_, this.credentials); authorizationToken = tp.getACSToken(requestUri, messageBufferUri); } catch (Exception e) { throw new AppFabricException(e.getMessage()); } try { messageBufferUri = messageBufferUri.replaceAll("http", "https"); URL urlConn = new URL(messageBufferUri); HttpURLConnection connection; if (httpWebProxy_ != null) connection = (HttpURLConnection) urlConn.openConnection(httpWebProxy_); else connection = (HttpURLConnection) urlConn.openConnection(); connection.setRequestMethod("DELETE"); connection.setDoInput(true); connection.setDoOutput(true); connection.setRequestProperty("Content-type", MessageBufferConstants.getCONTENT_TYPE_PROPERTY_FOR_ATOM_XML()); String authStr = TokenConstants.getWrapAuthenticationType() + " " + TokenConstants.getWrapAuthorizationHeaderKey() + "=\"" + authorizationToken + "\""; connection.setRequestProperty("Authorization", authStr); if (LoggerUtil.getIsLoggingOn()) SDKLoggerHelper.logRequest(connection, SDKLoggerHelper.RecordType.DeleteMessageBuffer_REQUEST); String responseCode = "<responseCode>" + connection.getResponseCode() + "</responseCode>"; if ((connection.getResponseCode() == MessageBufferConstants.HTTP_STATUS_CODE_OK)) { InputStream is = connection.getInputStream(); BufferedReader rd = new BufferedReader(new InputStreamReader(is)); String line; StringBuffer response = new StringBuffer(); while ((line = rd.readLine()) != null) { response.append(line); response.append('\r'); } rd.close(); } else { throw new AppFabricException("MessageBuffer could not be deleted.Error...Response code: " + connection.getResponseCode()); } if (LoggerUtil.getIsLoggingOn()) SDKLoggerHelper.logMessage(URLEncoder.encode(responseCode, "UTF-8"), SDKLoggerHelper.RecordType.DeleteMessageBuffer_RESPONSE); } catch (Exception e) { throw new AppFabricException(e.getMessage()); } } | public ActionForward dbExecute(ActionMapping pMapping, ActionForm pForm, HttpServletRequest pRequest, HttpServletResponse pResponse) throws DatabaseException { SubmitRegistrationForm newUserData = (SubmitRegistrationForm) pForm; if (!newUserData.getAcceptsEULA()) { pRequest.setAttribute("acceptsEULA", new Boolean(true)); pRequest.setAttribute("noEula", new Boolean(true)); return (pMapping.findForward("noeula")); } if (newUserData.getAction().equals("none")) { newUserData.setAction("submit"); pRequest.setAttribute("UserdataBad", new Boolean(true)); return (pMapping.findForward("success")); } boolean userDataIsOk = true; if (newUserData == null) { return (pMapping.findForward("failure")); } if (newUserData.getLastName().length() < 2) { userDataIsOk = false; pRequest.setAttribute("LastNameBad", new Boolean(true)); } if (newUserData.getFirstName().length() < 2) { userDataIsOk = false; pRequest.setAttribute("FirstNameBad", new Boolean(true)); } EmailValidator emailValidator = EmailValidator.getInstance(); if (!emailValidator.isValid(newUserData.getEmailAddress())) { pRequest.setAttribute("EmailBad", new Boolean(true)); userDataIsOk = false; } else { if (database.acquireUserByEmail(newUserData.getEmailAddress()) != null) { pRequest.setAttribute("EmailDouble", new Boolean(true)); userDataIsOk = false; } } if (newUserData.getFirstPassword().length() < 5) { userDataIsOk = false; pRequest.setAttribute("FirstPasswordBad", new Boolean(true)); } if (newUserData.getSecondPassword().length() < 5) { userDataIsOk = false; pRequest.setAttribute("SecondPasswordBad", new Boolean(true)); } if (!newUserData.getSecondPassword().equals(newUserData.getFirstPassword())) { userDataIsOk = false; pRequest.setAttribute("PasswordsNotEqual", new Boolean(true)); } if (userDataIsOk) { User newUser = new User(); newUser.setFirstName(newUserData.getFirstName()); newUser.setLastName(newUserData.getLastName()); if (!newUserData.getFirstPassword().equals("")) { MessageDigest md; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new DatabaseException("Could not hash password for storage: no such algorithm"); } try { md.update(newUserData.getFirstPassword().getBytes("UTF-8")); } catch (UnsupportedEncodingException e) { throw new DatabaseException("Could not hash password for storage: no such encoding"); } newUser.setPassword((new BASE64Encoder()).encode(md.digest())); } newUser.setEmailAddress(newUserData.getEmailAddress()); newUser.setHomepage(newUserData.getHomepage()); newUser.setAddress(newUserData.getAddress()); newUser.setInstitution(newUserData.getInstitution()); newUser.setLanguages(newUserData.getLanguages()); newUser.setDegree(newUserData.getDegree()); newUser.setNationality(newUserData.getNationality()); newUser.setTitle(newUserData.getTitle()); newUser.setActive(true); try { database.updateUser(newUser); } catch (DatabaseException e) { pRequest.setAttribute("UserstoreBad", new Boolean(true)); return (pMapping.findForward("success")); } pRequest.setAttribute("UserdataFine", new Boolean(true)); } else { pRequest.setAttribute("UserdataBad", new Boolean(true)); } return (pMapping.findForward("success")); } | 886,532 |
0 | public static ParsedXML parseXML(URL url) throws ParseException { try { InputStream is = url.openStream(); ParsedXML px = parseXML(is); is.close(); return px; } catch (IOException e) { throw new ParseException("could not read from URL" + url.toString()); } } | private static void copyFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | 886,533 |
1 | private static void copyFile(final File sourceFile, final File destFile) throws IOException { if (!destFile.exists()) { if (!destFile.createNewFile()) { throw new IOException("Destination file cannot be created: " + destFile.getPath()); } } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } | @Test public void testCopy_inputStreamToWriter_nullIn() throws Exception { ByteArrayOutputStream baout = new ByteArrayOutputStream(); OutputStream out = new YellOnFlushAndCloseOutputStreamTest(baout, true, true); Writer writer = new OutputStreamWriter(baout, "US-ASCII"); try { IOUtils.copy((InputStream) null, writer); fail(); } catch (NullPointerException ex) { } } | 886,534 |
1 | public static void copyFile(String fromFile, String toFile) { FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | private boolean exportPKC(String keystoreLocation, String pw) { boolean created = false; KeyStore ks = null; try { ks = KeyStore.getInstance(KeyStore.getDefaultType()); ks.load(new BufferedInputStream(new FileInputStream(keystoreLocation)), pw.toCharArray()); } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading keystore file when exporting PKC: " + e.getMessage()); } return false; } Certificate cert = null; try { cert = ks.getCertificate("saws"); } catch (KeyStoreException e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading certificate from keystore file when exporting PKC: " + e.getMessage()); } return false; } try { StringBuffer sb = new StringBuffer("-----BEGIN CERTIFICATE-----\n"); sb.append(new String(Base64.encode(cert.getEncoded()))); sb.append("\n-----END CERTIFICATE-----\n"); OutputStreamWriter wr = new OutputStreamWriter(new FileOutputStream("sawsSigningPKC.crt")); wr.write(new String(sb)); wr.flush(); wr.close(); created = true; } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error exporting PKC file: " + e.getMessage()); } return false; } return created; } | 886,535 |
1 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | private static void execute(String fileName) throws IOException, SQLException { InputStream input = DatabaseConstants.class.getResourceAsStream(fileName); StringWriter writer = new StringWriter(); IOUtils.copy(input, writer); String sql = writer.toString(); Statement statement = connection.createStatement(); statement.execute(sql); } | 886,536 |
0 | public void delete(int row) throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; try { conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); int max = findMaxRank(stmt); if ((row < 1) || (row > max)) throw new IllegalArgumentException("Row number not between 1 and " + max); stmt.executeUpdate("delete from WordClassifications where Rank = " + row); for (int i = row; i < max; ++i) stmt.executeUpdate("update WordClassifications set Rank = " + i + " where Rank = " + (i + 1)); conn.commit(); } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { throw new FidoDatabaseException(e); } } | public static void main(String args[]) { int i, j, l; short NUMNUMBERS = 256; short numbers[] = new short[NUMNUMBERS]; Darjeeling.print("START"); for (l = 0; l < 100; l++) { for (i = 0; i < NUMNUMBERS; i++) numbers[i] = (short) (NUMNUMBERS - 1 - i); for (i = 0; i < NUMNUMBERS; i++) { for (j = 0; j < NUMNUMBERS - i - 1; j++) if (numbers[j] > numbers[j + 1]) { short temp = numbers[j]; numbers[j] = numbers[j + 1]; numbers[j + 1] = temp; } } } Darjeeling.print("END"); } | 886,537 |
1 | private Map<String, DomAttr> getAttributesFor(final BaseFrame frame) throws IOException { final Map<String, DomAttr> map = createAttributesCopyWithClonedAttribute(frame, "src"); final DomAttr srcAttr = map.get("src"); if (srcAttr == null) { return map; } final Page enclosedPage = frame.getEnclosedPage(); final String suffix = getFileExtension(enclosedPage); final File file = createFile(srcAttr.getValue(), "." + suffix); if (enclosedPage instanceof HtmlPage) { file.delete(); ((HtmlPage) enclosedPage).save(file); } else { final InputStream is = enclosedPage.getWebResponse().getContentAsStream(); final FileOutputStream fos = new FileOutputStream(file); IOUtils.copyLarge(is, fos); IOUtils.closeQuietly(is); IOUtils.closeQuietly(fos); } srcAttr.setValue(file.getParentFile().getName() + FILE_SEPARATOR + file.getName()); return map; } | public static void copyFromFileToFileUsingNIO(File inputFile, File outputFile) throws FileNotFoundException, IOException { FileChannel inputChannel = new FileInputStream(inputFile).getChannel(); FileChannel outputChannel = new FileOutputStream(outputFile).getChannel(); try { inputChannel.transferTo(0, inputChannel.size(), outputChannel); } catch (IOException e) { throw e; } finally { if (inputChannel != null) inputChannel.close(); if (outputChannel != null) outputChannel.close(); } } | 886,538 |
0 | @SuppressWarnings("unchecked") public static synchronized MetaDataBean getMetaDataByUrl(URL url) { if (url == null) throw new IllegalArgumentException("Properties url for meta data is null"); MetaDataBean mdb = metaDataByUrl.get(url); if (mdb != null) return mdb; log.info("Loading metadata " + url); Properties properties = new Properties(); try { properties.load(url.openStream()); } catch (IOException e) { throw new RuntimeException(e); } mdb = new MetaDataBean((Map) properties); metaDataByUrl.put(url, mdb); mdb.instanceValue = url.toString(); return mdb; } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,539 |
0 | public static String SHA1(String text) throws NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(text.getBytes()); byte byteData[] = md.digest(); StringBuilder sb = new StringBuilder(); for (int i = 0; i < byteData.length; i++) { sb.append(Integer.toString((byteData[i] & 0xff) + 0x100, 16).substring(1)); } StringBuilder hexString = new StringBuilder(); for (int i = 0; i < byteData.length; i++) { String hex = Integer.toHexString(0xff & byteData[i]); if (hex.length() == 1) hexString.append('0'); hexString.append(hex); } return hexString.toString(); } | public static String readFromUrl(String url) { URL url_ = null; URLConnection uc = null; BufferedReader in = null; StringBuilder str = new StringBuilder(); try { url_ = new URL(url); uc = url_.openConnection(); in = new BufferedReader(new InputStreamReader(uc.getInputStream())); String inputLine; while ((inputLine = in.readLine()) != null) str.append(inputLine); in.close(); } catch (IOException e) { e.printStackTrace(); } return str.toString(); } | 886,540 |
0 | protected String decrypt(final String data, final String key) throws CryptographicFailureException { Validate.notNull(data, "Provided data cannot be null."); Validate.notNull(key, "Provided key name cannot be null."); final PrivateKey pk = getPrivateKey(key); if (pk == null) { throw new CryptographicFailureException("PrivateKeyNotFound", String.format("Cannot find private key '%s'", key)); } try { final Cipher cipher = Cipher.getInstance(pk.getAlgorithm()); cipher.init(Cipher.DECRYPT_MODE, pk); final ByteArrayInputStream bin = new ByteArrayInputStream(Base64.decodeBase64(data.getBytes())); final CipherInputStream cin = new CipherInputStream(bin, cipher); final ByteArrayOutputStream bout = new ByteArrayOutputStream(); IOUtils.copy(cin, bout); return new String(bout.toByteArray()); } catch (NoSuchAlgorithmException e) { throw new IllegalStateException(String.format("Cannot find instance of algorithm '%s'", pk.getAlgorithm()), e); } catch (NoSuchPaddingException e) { throw new IllegalStateException(String.format("Cannot build instance of algorithm '%s'", pk.getAlgorithm()), e); } catch (InvalidKeyException e) { throw new IllegalStateException(String.format("Cannot build instance of algorithm '%s'", pk.getAlgorithm()), e); } catch (IOException e) { throw new IllegalStateException("Cannot build in-memory cipher copy", e); } } | public static String genDigest(String info) { MessageDigest alga; byte[] digesta = null; try { alga = MessageDigest.getInstance("SHA-1"); alga.update(info.getBytes()); digesta = alga.digest(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return byte2hex(digesta); } | 886,541 |
0 | public void migrateTo(String newExt) throws IOException { DigitalObject input = new DigitalObject.Builder(Content.byReference(new File(AllJavaSEServiceTestsuite.TEST_FILE_LOCATION + "PlanetsLogo.png").toURI().toURL())).build(); System.out.println("Input: " + input); FormatRegistry format = FormatRegistryFactory.getFormatRegistry(); MigrateResult mr = dom.migrate(input, format.createExtensionUri("png"), format.createExtensionUri(newExt), null); ServiceReport sr = mr.getReport(); System.out.println("Got Report: " + sr); DigitalObject doOut = mr.getDigitalObject(); assertTrue("Resulting digital object is null.", doOut != null); System.out.println("Output: " + doOut); System.out.println("Output.content: " + doOut.getContent()); File out = new File("services/java-se/test/results/test." + newExt); FileOutputStream fo = new FileOutputStream(out); IOUtils.copyLarge(doOut.getContent().getInputStream(), fo); fo.close(); System.out.println("Recieved service report: " + mr.getReport()); System.out.println("Recieved service properties: "); ServiceProperties.printProperties(System.out, mr.getReport().getProperties()); } | public void addXMLResources(URL url) throws IOException { try { Document document = new Builder().build(url.openStream()); Element root = document.getRootElement(); if (!root.getLocalName().equals("resources")) throw new IOException("Document root must be <resources>"); Elements elements = root.getChildElements(); for (int i = 0; i < elements.size(); i++) { Element element = elements.get(i); if (element.getLocalName().equals("string")) parseString(element); else if (element.getLocalName().equals("menubar")) parseMenubar(element); else if (element.getLocalName().equals("menu")) parseMenu(element); else if (element.getLocalName().equals("toolbar")) parseToolbar(element); else throw new IOException("Unrecognized element: <" + element.getLocalName() + ">"); } } catch (ParsingException pe) { IOException ioe = new IOException(pe.getMessage()); ioe.initCause(pe); throw ioe; } } | 886,542 |
1 | public File extractID3v2TagDataIntoFile(File outputFile) throws TagNotFoundException, IOException { int startByte = (int) ((MP3AudioHeader) audioHeader).getMp3StartByte(); if (startByte >= 0) { FileInputStream fis = new FileInputStream(file); FileChannel fc = fis.getChannel(); ByteBuffer bb = ByteBuffer.allocate(startByte); fc.read(bb); FileOutputStream out = new FileOutputStream(outputFile); out.write(bb.array()); out.close(); fc.close(); fis.close(); return outputFile; } throw new TagNotFoundException("There is no ID3v2Tag data in this file"); } | private boolean get(String surl, File dst, Get get) throws IOException { boolean ret = false; InputStream is = null; OutputStream os = null; try { try { if (surl.startsWith("file://")) { is = new FileInputStream(surl.substring(7)); } else { URL url = new URL(surl); is = url.openStream(); } if (is != null) { os = new FileOutputStream(dst); int read; byte[] buffer = new byte[4096]; while ((read = is.read(buffer)) > 0) { os.write(buffer, 0, read); } ret = true; } } catch (ConnectException ex) { log("Connect exception " + ex.getMessage(), ex, 3); if (dst.exists()) dst.delete(); } catch (UnknownHostException ex) { log("Unknown host " + ex.getMessage(), ex, 3); } catch (FileNotFoundException ex) { log("File not found: " + ex.getMessage(), 3); } } finally { if (is != null) is.close(); if (os != null) os.close(); is = null; os = null; } if (ret) { try { is = new FileInputStream(dst); os = new FileOutputStream(getCachedFile(get)); int read; byte[] buffer = new byte[4096]; while ((read = is.read(buffer)) > 0) { os.write(buffer, 0, read); } } finally { if (is != null) is.close(); if (os != null) os.close(); is = null; os = null; } } return ret; } | 886,543 |
0 | public int add(WebService ws) throws FidoDatabaseException { try { Connection conn = null; Statement stmt = null; ResultSet rs = null; try { String sql = "insert into WebServices (MethodName, ServiceURI) " + "values ('" + ws.getMethodName() + "', '" + ws.getServiceURI() + "')"; conn = fido.util.FidoDataSource.getConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); stmt.executeUpdate(sql); int id; sql = "select currval('webservices_webserviceid_seq')"; rs = stmt.executeQuery(sql); if (rs.next() == false) throw new SQLException("No rows returned from select currval() query"); else id = rs.getInt(1); PreparedStatement pstmt = conn.prepareStatement("insert into WebServiceParams " + "(WebServiceId, Position, ParameterName, Type) " + "values (?, ?, ?, ?)"); pstmt.setInt(1, id); pstmt.setInt(2, 0); pstmt.setString(3, null); pstmt.setInt(4, ws.getReturnType()); pstmt.executeUpdate(); for (Iterator it = ws.parametersIterator(); it.hasNext(); ) { WebServiceParameter param = (WebServiceParameter) it.next(); pstmt.setInt(2, param.getPosition()); pstmt.setString(3, param.getName()); pstmt.setInt(4, param.getType()); pstmt.executeUpdate(); } conn.commit(); return id; } catch (SQLException e) { if (conn != null) conn.rollback(); throw e; } finally { if (rs != null) rs.close(); if (stmt != null) stmt.close(); if (conn != null) conn.close(); } } catch (SQLException e) { e.printStackTrace(); throw new FidoDatabaseException(e); } } | private void loadFile(File file) throws Exception { Edl edl = new Edl("file:///" + file.getAbsolutePath()); URL url = ExtractaHelper.retrieveUrl(edl.getUrlRetrievalDescriptor()); String sUrlString = url.toExternalForm(); if (sUrlString.startsWith("file:/") && (sUrlString.charAt(6) != '/')) { sUrlString = sUrlString.substring(0, 6) + "//" + sUrlString.substring(6); } Document document = DomHelper.parseHtml(url.openStream()); m_inputPanel.setDocument(document); m_resultPanel.setContext(new ResultContext(edl, document, url)); initNameCounters(edl.getItemDescriptors()); m_outputFile = file; m_sUrlString = sUrlString; m_urlTF.setText(m_sUrlString); updateHistroy(m_outputFile); setModified(false); } | 886,544 |
0 | public static String encryptString(String str) { StringBuffer sb = new StringBuffer(); int i; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(str.getBytes()); byte[] md5Bytes = md5.digest(); for (i = 0; i < md5Bytes.length; i++) { sb.append(md5Bytes[i]); } } catch (Exception e) { } return sb.toString(); } | public static void fastBackup(File file) { FileChannel in = null; FileChannel out = null; FileInputStream fin = null; FileOutputStream fout = null; try { in = (fin = new FileInputStream(file)).getChannel(); out = (fout = new FileOutputStream(file.getAbsolutePath() + ".bak")).getChannel(); in.transferTo(0, in.size(), out); } catch (IOException e) { Logging.getErrorLog().reportError("Fast backup failure (" + file.getAbsolutePath() + "): " + e.getMessage()); } finally { if (fin != null) { try { fin.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file input stream", e); } } if (fout != null) { try { fout.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file output stream", e); } } if (in != null) { try { in.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file channel", e); } } if (out != null) { try { out.close(); } catch (IOException e) { Logging.getErrorLog().reportException("Failed to close file channel", e); } } } } | 886,545 |
0 | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | private String hash(String message) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA1"); } catch (NoSuchAlgorithmException e) { throw new AssertionError("Can't find the SHA1 algorithm in the java.security package"); } String saltString = String.valueOf(12345); md.update(saltString.getBytes()); md.update(message.getBytes()); byte[] digestBytes = md.digest(); StringBuffer digestSB = new StringBuffer(); for (int i = 0; i < digestBytes.length; i++) { int lowNibble = digestBytes[i] & 0x0f; int highNibble = (digestBytes[i] >> 4) & 0x0f; digestSB.append(Integer.toHexString(highNibble)); digestSB.append(Integer.toHexString(lowNibble)); } String digestStr = digestSB.toString().trim(); return digestStr; } | 886,546 |
1 | public XmldbURI createFile(String newName, InputStream is, Long length, String contentType) throws IOException, PermissionDeniedException, CollectionDoesNotExistException { if (LOG.isDebugEnabled()) LOG.debug("Create '" + newName + "' in '" + xmldbUri + "'"); XmldbURI newNameUri = XmldbURI.create(newName); MimeType mime = MimeTable.getInstance().getContentTypeFor(newName); if (mime == null) { mime = MimeType.BINARY_TYPE; } DBBroker broker = null; Collection collection = null; BufferedInputStream bis = new BufferedInputStream(is); VirtualTempFile vtf = new VirtualTempFile(); BufferedOutputStream bos = new BufferedOutputStream(vtf); IOUtils.copy(bis, bos); bis.close(); bos.close(); vtf.close(); if (mime.isXMLType() && vtf.length() == 0L) { if (LOG.isDebugEnabled()) LOG.debug("Creating dummy XML file for null resource lock '" + newNameUri + "'"); vtf = new VirtualTempFile(); IOUtils.write("<null_resource/>", vtf); vtf.close(); } TransactionManager transact = brokerPool.getTransactionManager(); Txn txn = transact.beginTransaction(); try { broker = brokerPool.get(subject); collection = broker.openCollection(xmldbUri, Lock.WRITE_LOCK); if (collection == null) { LOG.debug("Collection " + xmldbUri + " does not exist"); transact.abort(txn); throw new CollectionDoesNotExistException(xmldbUri + ""); } if (mime.isXMLType()) { if (LOG.isDebugEnabled()) LOG.debug("Inserting XML document '" + mime.getName() + "'"); VirtualTempFileInputSource vtfis = new VirtualTempFileInputSource(vtf); IndexInfo info = collection.validateXMLResource(txn, broker, newNameUri, vtfis); DocumentImpl doc = info.getDocument(); doc.getMetadata().setMimeType(mime.getName()); collection.store(txn, broker, info, vtfis, false); } else { if (LOG.isDebugEnabled()) LOG.debug("Inserting BINARY document '" + mime.getName() + "'"); InputStream fis = vtf.getByteStream(); bis = new BufferedInputStream(fis); DocumentImpl doc = collection.addBinaryResource(txn, broker, newNameUri, bis, mime.getName(), length.longValue()); bis.close(); } transact.commit(txn); if (LOG.isDebugEnabled()) LOG.debug("Document created sucessfully"); } catch (EXistException e) { LOG.error(e); transact.abort(txn); throw new IOException(e); } catch (TriggerException e) { LOG.error(e); transact.abort(txn); throw new IOException(e); } catch (SAXException e) { LOG.error(e); transact.abort(txn); throw new IOException(e); } catch (LockException e) { LOG.error(e); transact.abort(txn); throw new PermissionDeniedException(xmldbUri + ""); } catch (IOException e) { LOG.error(e); transact.abort(txn); throw e; } catch (PermissionDeniedException e) { LOG.error(e); transact.abort(txn); throw e; } finally { if (vtf != null) { vtf.delete(); } if (collection != null) { collection.release(Lock.WRITE_LOCK); } brokerPool.release(broker); if (LOG.isDebugEnabled()) LOG.debug("Finished creation"); } XmldbURI newResource = xmldbUri.append(newName); return newResource; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,547 |
1 | private void copyFile(File dir, File fileToAdd) { try { byte[] readBuffer = new byte[1024]; File file = new File(dir.getCanonicalPath() + File.separatorChar + fileToAdd.getName()); if (file.createNewFile()) { FileInputStream fis = new FileInputStream(fileToAdd); FileOutputStream fos = new FileOutputStream(file); int bytesRead; do { bytesRead = fis.read(readBuffer); fos.write(readBuffer, 0, bytesRead); } while (bytesRead == 0); fos.flush(); fos.close(); fis.close(); } else { logger.severe("unable to create file:" + file.getAbsolutePath()); } } catch (IOException ioe) { logger.severe("unable to create file:" + ioe); } } | public Boolean compress(String sSourceDir, ArrayList<String> aFiles, String sDestinationFilename) { logger.debug("compress(%s, %s, %s)", sSourceDir, aFiles, sDestinationFilename); BufferedInputStream oOrigin = null; FileOutputStream oDestination; ZipOutputStream oOutput = null; Iterator<String> oIterator; byte[] aData; try { oDestination = new FileOutputStream(sDestinationFilename); oOutput = new ZipOutputStream(new BufferedOutputStream(oDestination)); aData = new byte[BUFFER_SIZE]; oIterator = aFiles.iterator(); while (oIterator.hasNext()) { try { String sFilename = (String) oIterator.next(); FileInputStream fisInput = new FileInputStream(sSourceDir + File.separator + sFilename); oOrigin = new BufferedInputStream(fisInput, BUFFER_SIZE); ZipEntry oEntry = new ZipEntry(sFilename.replace('\\', '/')); oOutput.putNextEntry(oEntry); int iCount; while ((iCount = oOrigin.read(aData, 0, BUFFER_SIZE)) != -1) oOutput.write(aData, 0, iCount); } finally { StreamHelper.close(oOrigin); } } } catch (Exception oException) { logger.error(oException.getMessage(), oException); return false; } finally { StreamHelper.close(oOutput); } return true; } | 886,548 |
0 | public static void fileCopy(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) { in.close(); } if (out != null) { out.close(); } } } | public ActionForward execute(ActionMapping mapping, ActionForm form, HttpServletRequest request, HttpServletResponse response) throws Exception { String limitsSet = ""; String synstatus = SystemFilesLoader.getInstance().getNewgenlibProperties().getProperty("SYNDETICS", "OFF"); String synncode = SystemFilesLoader.getInstance().getNewgenlibProperties().getProperty("SYNDETICS_CLIENT_CODE", ""); try { if (request.getSession().getAttribute("searchLimits") != null) { System.out.println("searchLimits set"); limitsSet = "SET"; java.util.Hashtable htLimits = new java.util.Hashtable(); htLimits = (java.util.Hashtable) request.getSession().getAttribute("searchLimits"); } else { limitsSet = "UNSET"; System.out.println("searchLimits not set"); } java.util.Properties prop = System.getProperties(); prop.load(new FileInputStream(ejb.bprocess.util.NewGenLibRoot.getRoot() + java.io.File.separator + "SystemFiles" + java.io.File.separator + "ENV_VAR.txt")); System.out.println("SEARCH MODE IS " + searchmode + " FILE PATH " + ejb.bprocess.util.NewGenLibRoot.getRoot() + java.io.File.separator + "SystemFiles" + java.io.File.separator + "ENV_VAR.txt"); } catch (Exception e) { } javax.servlet.http.HttpSession session = request.getSession(); String forward = "searchView"; int link = 0, singleLink = 0; java.util.Vector vecThisPage = new java.util.Vector(); aportal.form.cataloguing.SearchViewForm svF = (aportal.form.cataloguing.SearchViewForm) form; svF.setSyndeticsStatus(synstatus); svF.setSyndeticsClientCode(synncode); opacHm = (ejb.bprocess.opac.xcql.OPACUtilitiesHome) ejb.bprocess.util.HomeFactory.getInstance().getRemoteHome("OPACUtilities"); ejb.bprocess.opac.xcql.OPACUtilities opacUt = opacHm.create(); System.out.println("CLASS NO " + request.getParameter("ClassNo") + " ClassNoForwarded " + session.getAttribute("ClassNoForwarded")); if (svF.getExportRec() == null || !(svF.getExportRec().equals("export"))) { if (request.getParameter("CatId") != null && request.getParameter("OwnerId") != null && request.getParameter("relation") != null && !(session.getAttribute("HostItemDisplay") != null && session.getAttribute("HostItemDisplay").toString().equals("false"))) { home = (ejb.bprocess.opac.xcql.SearchSRUWCatalogueHome) ejb.bprocess.util.HomeFactory.getInstance().getRemoteHome("SearchSRUWCatalogue"); ejb.bprocess.opac.xcql.SearchSRUWCatalogue searchCat = home.create(); String catId1 = request.getParameter("CatId"); String ownId1 = request.getParameter("OwnerId"); System.out.println("*********************CatId1: " + catId1); svF.setCatalogueRecordId(catId1); svF.setOwnerLibraryId(ownId1); String rel = request.getParameter("relation"); java.util.Vector vecL = searchCat.getRelatedCatalogueRecords(null, catId1, ownId1, rel); request.setAttribute("LuceneVector", vecL); session.setAttribute("searchVec", vecL); singleLink = 1; session.setAttribute("HostItemDisplay", "false"); link = 1; forward = "searchRes"; vecThisPage.addElement(catId1); vecThisPage.addElement(ownId1); } else if (link == 0 || singleLink == 1) { System.out.println("LINK AND SINGLE LINK " + link + " single " + singleLink); if ((request.getParameter("ClassNo") != null) && session.getAttribute("ClassNoForwarded") == null) { System.out.println("action called for class no."); String classificNo = request.getParameter("ClassNo"); System.out.println("TITLE WORDS "); home = (ejb.bprocess.opac.xcql.SearchSRUWCatalogueHome) ejb.bprocess.util.HomeFactory.getInstance().getRemoteHome("SearchSRUWCatalogue"); ejb.bprocess.opac.xcql.SearchSRUWCatalogue searchCat = home.create(); String rawSearchText = (new beans.miscellaneous.RequestStringProcessor()).processString("*" + classificNo + "*"); System.out.println("raw search Text" + rawSearchText); String searchText = "classificationNumber=" + rawSearchText; System.out.println("search text is " + searchText); String xmlRes = (new org.z3950.zing.cql.CQLParser()).parse(searchText).toXCQL(0); java.util.Hashtable hs = new java.util.Hashtable(); java.util.Vector v1 = new java.util.Vector(); if (session.getAttribute("searchLimits") != null) { hs = (java.util.Hashtable) session.getAttribute("searchLimits"); } Vector vec = new Vector(); String solrQuery = Utility.getInstance().simplifiedSolrQuery(classificNo, "classificationNumber"); if (limitsSet.equalsIgnoreCase("SET")) { String limitsQuery = limitsSolrQuery(hs); solrQuery += limitsQuery; } solrQuery += " & "; Vector newRetvec = searchCat.processSolrQuery(1, 25, solrQuery, "245_Tag", "asc"); Hashtable ht = (Hashtable) newRetvec.get(0); String totrec = (String) ht.get("HITS"); session.setAttribute("TOTALREC", Integer.parseInt(totrec)); v1 = (Vector) ht.get("RESULTS"); hs.put("Query", solrQuery); if (v1.size() > 0) { hs.put("searchText", rawSearchText); hs.put("noOfRecords", 25); hs.put("browseType", "Classification Number"); session.setAttribute("searchEntry", hs); session.setAttribute("searchVec", v1); forward = "searchRes"; } else { forward = "home"; } } else { System.out.println("ELSE CALLED "); String record = request.getParameter("record"); String recNo = request.getParameter("recNo"); Integer catId = 0, ownerId = 0; String title = ""; if (request.getParameter("CatId") != null && request.getParameter("OwnerId") != null) { catId = new Integer(request.getParameter("CatId")).intValue(); ownerId = new Integer(request.getParameter("OwnerId")).intValue(); System.out.println("catId is +++=" + catId); System.out.println("OwnerId is +++=" + ownerId); title = request.getParameter("title"); svF.setCatalogueRecordId(request.getParameter("CatId")); svF.setOwnerLibraryId(request.getParameter("OwnerId")); } System.out.println("%%%%%%%%%%%%%%%%%%%%%%%%%VVVVVVVVVVVVVVVVVVVVVV"); ArrayList alOtherBooks = ((ejb.bprocess.opac.SearchCatalogue) ejb.bprocess.util.HomeFactory.getInstance().getHome("SearchCatalogue")).getOtherBooksInTheRack(null, catId.toString(), ownerId.toString(), ownerId.toString()); System.out.println("alOtherBooks size is " + alOtherBooks.size()); Vector vOtherBooks = new Vector(); Session catrecsession = DBConnector.getInstance().getSession(); utility = ejb.bprocess.util.Utility.getInstance(catrecsession); for (int i = 0; i < alOtherBooks.size(); i++) { String[] scData = (String[]) (alOtherBooks.get(i)); String catalogueId = scData[0]; String ownerLibId = scData[1]; System.out.println("catId is +++=" + catalogueId); System.out.println("OwnerId is +++=" + ownerLibId); String xmlWholeRecord = ""; String titleD = ""; String titleV = ""; String authorV = ""; String isbnNumber = ""; if (catalogueId != null && ownerLibId != null) { try { System.out.println("***************************** 0"); Hashtable htDetails = utility.getCatalogueRecord(new Integer(catalogueId), new Integer(ownerLibId)); System.out.println("***************************** 1"); if (htDetails != null && !htDetails.isEmpty()) { System.out.println("htDetails" + htDetails.toString()); titleV = utility.getTestedString(htDetails.get("Title")); authorV = utility.getTestedString(htDetails.get("Author")); isbnNumber = utility.getTestedString(htDetails.get("ISBN")); String[] str1 = titleV.split("/"); if (str1.length > 0) { titleD = str1[0]; if (titleD.length() > 45) { titleD = titleD.substring(0, 45) + "..."; } } String[] str = new String[5]; str[0] = titleD; str[1] = authorV; str[2] = isbnNumber; str[3] = catalogueId; str[4] = ownerLibId; vOtherBooks.add(str); System.out.println("Other Books size is " + vOtherBooks.size()); } } catch (Exception e) { e.printStackTrace(); } } } System.out.println("Other Books vector is *************************** \n "); for (int i = 0; i < vOtherBooks.size(); i++) { String[] str = (String[]) vOtherBooks.get(i); System.out.println("title :" + str[0].toString()); System.out.println("author :" + str[1].toString()); System.out.println("isbn :" + str[2].toString()); System.out.println("catID :" + str[3].toString()); System.out.println("ownerLibId :" + str[4].toString()); } System.out.println("&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&"); request.setAttribute("fisheyedata", vOtherBooks); catrecsession.close(); session.setAttribute("SingleViewExport", vecThisPage); if (session.getAttribute("OnlySingleRec") != null && session.getAttribute("OnlySingleRec").toString().equals("true")) { java.util.Vector v1 = new java.util.Vector(); System.out.println("SEARCH MODE " + searchmode); if (searchmode.equalsIgnoreCase("a")) { System.out.println("SEARCHMODE IN SEARCH VIEW ACTION (IF) " + searchmode); v1 = (java.util.Vector) request.getAttribute("LuceneVector"); System.out.println("VECTOR V1 " + v1); } else { System.out.println("SEARCHMODE IN SEARCH VIEW ACTION (ELSE)" + searchmode); v1 = (java.util.Vector) session.getAttribute("searchVec"); } Object[] obj = (Object[]) v1.elementAt(0); String str[] = (String[]) obj[0]; java.util.Hashtable h = new java.util.Hashtable(); String tit = ""; h = (java.util.Hashtable) obj[1]; System.out.println("HASH TABLE in view action " + h); catId = new Integer(str[0]).intValue(); ownerId = new Integer(str[1]).intValue(); title = h.get("TITLE").toString(); svF.setAttachmentsAndUrl(""); if ((h.get("ATTACHMENTS") != null && h.get("ATTACHMENTS").equals("AVAILABLE"))) { svF.setAttachmentsAndUrl("available"); } record = "full"; recNo = "1"; session.removeAttribute("OnlySingleRec"); } if (session.getAttribute("HostItemDisplay") != null && session.getAttribute("HostItemDisplay").equals("false")) { session.removeAttribute("HostItemDisplay"); } session.setAttribute("Title", title); java.util.Hashtable hash1 = opacUt.getDetailsForSingleCatalogueRecord(catId, ownerId); vecThisPage.addElement(String.valueOf(catId)); vecThisPage.addElement(String.valueOf(ownerId)); svF.setAttachmentsAndUrl(""); if (hash1.get("ATTACHMENTS") != null && hash1.get("ATTACHMENTS").toString().equals("AVAILABLE")) { svF.setAttachmentsAndUrl("available"); } svF.setRecordNo(recNo); session.setAttribute("record", record); java.util.Vector vecCO = (java.util.Vector) session.getAttribute("CatAndOwner"); svF.setCatCur(catId); svF.setOwnerCur(ownerId); svF.setPrevExists("no"); svF.setNextExists("no"); if (vecCO != null) { for (int j = 0; j < vecCO.size(); j = j + 4) { int c = new Integer(vecCO.elementAt(j).toString()).intValue(); int o = new Integer(vecCO.elementAt(j + 1).toString()).intValue(); if (c == catId && o == ownerId) { if (j != 0) { int catPrev = new Integer(vecCO.elementAt(j - 4).toString()).intValue(); int ownerPrev = new Integer(vecCO.elementAt(j - 3).toString()).intValue(); svF.setCatPrev(catPrev); svF.setOwnerPrev(ownerPrev); svF.setTitlePrev(vecCO.elementAt(j - 2).toString()); svF.setRecPrev(vecCO.elementAt(j - 1).toString()); svF.setPrevExists("yes"); } if (j < vecCO.size() - 4) { int catNext = new Integer(vecCO.elementAt(j + 4).toString()).intValue(); int ownerNext = new Integer(vecCO.elementAt(j + 5).toString()).intValue(); svF.setCatNext(catNext); svF.setOwnerNext(ownerNext); svF.setTitleNext(vecCO.elementAt(j + 6).toString()); svF.setRecNext(vecCO.elementAt(j + 7).toString()); svF.setNextExists("yes"); } } } } String str[] = (String[]) hash1.get("Biblo_Mat"); int bib_id = new Integer(str[0]).intValue(); int mat_id = new Integer(str[1]).intValue(); aportal.view.RecordView rv = new aportal.view.DesignFactory().getCorView(bib_id, mat_id, record); String type = ""; if (bib_id == 3 && mat_id == 1) { type = "Book"; } else if (bib_id == 4 && mat_id == 1) { type = "Serial"; } else if (bib_id == 1 && mat_id == 1) { type = "Book Chapter"; } else if (bib_id == 2 && mat_id == 1) { type = "Serial Article"; } else { type = ejb.bprocess.util.TypeDefinition.getInstance().getTypeDefinition(String.valueOf(bib_id), String.valueOf(mat_id)); } java.util.Hashtable hMono = (java.util.Hashtable) hash1.get("MonoGraphRecords"); java.util.Hashtable h4 = rv.getView(hash1); h4.put("Type", type); Hashtable ht = (Hashtable) h4.get("NoLink"); if (ht != null && ht.get("URLS_856") != null) { Vector urls856 = (Vector) ht.get("URLS_856"); if (urls856.size() > 0) { Hashtable linksAndText = new Hashtable(); Hashtable url856 = new Hashtable(); for (int i = 0; i < urls856.size(); i += 2) { url856.put(urls856.elementAt(i), urls856.elementAt(i + 1)); } linksAndText.put("URL", url856); h4.put("URLS_856", linksAndText); } } try { String sessionid = request.getSession().getId(); ejb.bprocess.holdings.HoldingsStatement holdingsStatement = ((ejb.bprocess.holdings.HoldingsStatementHome) ejb.bprocess.util.HomeFactory.getInstance().getRemoteHome("HoldingsStatement")).create(); java.util.Vector vecLib = new java.util.Vector(); vecLib.addElement("1"); if (session.getAttribute("Libraries") != null) { vecLib = (java.util.Vector) session.getAttribute("Libraries"); } String libIds = ""; for (int p = 0; p < vecLib.size(); p++) { if (p != 0) { libIds += ","; } String libName = vecLib.elementAt(p).toString(); Session session1 = DBConnector.getInstance().getSession(); libIds += ejb.bprocess.util.Utility.getInstance(session1).getLibraryId(libName); session1.close(); } request.setAttribute("catRecId", String.valueOf(catId)); request.setAttribute("ownLibId", String.valueOf(ownerId)); request.setAttribute("libIds", String.valueOf(libIds)); Hashtable onerecordattach = new Hashtable(); JSONObject jsonCatOwnId = new JSONObject().put("Id", catId).put("LibId", ownerId); ejb.bprocess.opac.SearchCatalogue searchCatAttach = ((ejb.bprocess.opac.SearchCatalogueHome) ejb.bprocess.util.HomeFactory.getInstance().getRemoteHome("SearchCatalogue")).create(); String strAttach = searchCatAttach.getAttachmentDetails(jsonCatOwnId.toString()); if (!strAttach.equals("")) { JSONObject jsonAttach = new JSONObject(strAttach); if (jsonAttach != null) { if (!jsonAttach.isNull("BookCover")) { ArrayList albookcover = new ArrayList(); JSONArray jsonarr = (JSONArray) jsonAttach.get("BookCover"); if (jsonarr != null) { for (int j = 0; j < jsonarr.length(); j++) { albookcover.add(jsonarr.getString(j)); } onerecordattach.put("BookCover", albookcover); } } if (!jsonAttach.isNull("TOC")) { ArrayList alTOC = new ArrayList(); JSONArray jsonarr = (JSONArray) jsonAttach.get("TOC"); if (jsonarr != null) { for (int j = 0; j < jsonarr.length(); j++) { alTOC.add(jsonarr.getString(j)); } onerecordattach.put("TOC", alTOC); } } if (!jsonAttach.isNull("Preview")) { ArrayList alPreview = new ArrayList(); JSONArray jsonarr = (JSONArray) jsonAttach.get("Preview"); if (jsonarr != null) { for (int j = 0; j < jsonarr.length(); j++) { alPreview.add(jsonarr.getString(j)); } onerecordattach.put("Preview", alPreview); } } if (!jsonAttach.isNull("FullView")) { ArrayList alFullView = new ArrayList(); JSONArray jsonarr = (JSONArray) jsonAttach.get("FullView"); if (jsonarr != null) { for (int j = 0; j < jsonarr.length(); j++) { alFullView.add(jsonarr.getString(j)); } onerecordattach.put("FullView", alFullView); } } if (!jsonAttach.isNull("Attachment")) { ArrayList alAttachment = new ArrayList(); JSONArray jsonarr = (JSONArray) jsonAttach.get("Attachment"); if (jsonarr != null) { for (int j = 0; j < jsonarr.length(); j++) { alAttachment.add(jsonarr.getString(j)); } onerecordattach.put("Attachment", alAttachment); } } if (onerecordattach != null && !onerecordattach.isEmpty()) { h4.put("dAttachment", onerecordattach); } } } svF.setHashSing(h4); System.out.println("hash tabel values*************************"); Enumeration enumx = h4.keys(); while (enumx.hasMoreElements()) { String key = enumx.nextElement().toString(); System.out.println("Key: " + key + "-----value: " + h4.get(key)); } System.out.println("********************************************"); } catch (Exception e) { e.printStackTrace(); } } } } else if (svF.getExportRec() != null && svF.getExportRec().equals("export")) { svF.setExportRec(null); vecThisPage = (java.util.Vector) session.getAttribute("SingleViewExport"); String format = svF.getSf(); if (format.equals("marc")) { String marc = opacUt.getDetailsForMultiRecordViewMARC(vecThisPage); svF.setDisplayFormat(marc); session.setAttribute("RecordDisplay", marc); forward = "RecordFormat"; } else if (format.equals("marcXml")) { String marcXML = opacUt.getDetailsForMultiRecordViewMARCXML(vecThisPage); svF.setDisplayFormat(marcXML); response.setContentType("text/xml"); session.setAttribute("RecordDisplay", marcXML); forward = "RecordFormat"; } else if (format.equals("mods")) { String mods = opacUt.getDetailsForMultiRecordViewMODS(vecThisPage); svF.setDisplayFormat(mods); session.setAttribute("RecordDisplay", mods); forward = "RecordFormat"; } else if (format.equals("dc")) { String dc = opacUt.getDetailsForMultiRecordViewDublinCore(vecThisPage); svF.setDisplayFormat(dc); session.setAttribute("RecordDisplay", dc); forward = "RecordFormat"; } else if (format.equals("agris")) { String agr = opacUt.getDetailsForMultiRecordViewAgris(vecThisPage); svF.setDisplayFormat(agr); session.setAttribute("RecordDisplay", agr); forward = "RecordFormat"; } else if (format.equals("text")) { java.util.Vector vecTextDis = new java.util.Vector(); for (int i2 = 0; i2 < vecThisPage.size(); i2 = i2 + 2) { java.util.Hashtable hash1 = opacUt.getDetailsForSingleCatalogueRecord(new Integer(vecThisPage.elementAt(i2).toString()).intValue(), new Integer(vecThisPage.elementAt(i2 + 1).toString()).intValue()); aportal.view.ISBDView fullView = new aportal.view.ISBDView(); java.util.Hashtable hashCit = fullView.getView(hash1); vecTextDis.addElement(hashCit); forward = "RecordFormatText"; } session.setAttribute("RecordTextDisplay", vecTextDis); if (svF.getPs() != null && svF.getPs().equals("email")) { boolean flag = false; if (svF.getEmail() != null && !(svF.getEmail().equals(""))) { String emailId = svF.getEmail(); try { String sessionid = request.getSession().getId(); java.net.URL url = new java.net.URL("http://localhost:" + request.getServerPort() + "/newgenlibctxt/jsp/aportal/cataloguing/RecordDisplayText.jsp;jsessionid=" + sessionid); java.net.URLConnection urlCon = url.openConnection(); java.io.InputStream is = urlCon.getInputStream(); String htmlContent = ""; java.io.BufferedReader br = new java.io.BufferedReader(new java.io.InputStreamReader(is)); String line = ""; while ((line = br.readLine()) != null) { htmlContent = htmlContent + line; } String[] emailids = { emailId }; int status = SendEmail.getInstance().sendMail(emailids, "OPAC results", htmlContent, "html"); if (status == 0) flag = true; else flag = false; } catch (Exception exp) { exp.printStackTrace(); } } String mailMessage = "The selected records have been successfully mailed to " + svF.getEmail(); if (flag == false) { mailMessage = "<h4><p>The selected records could not be mailed to " + svF.getEmail() + " These might be the possible reasons.</p></h4>" + "<h5><ol> <li>The email id entered is not a valid one</font></li>" + "<li>The email id domain might not be in the list of allowed recipient hosts</li>" + "<li>There might a error in connectivity to the mail server</li></ol></h5>" + "<h4><p>Please contact the Network Administrator </p></h4>"; } session.setAttribute("MailStatus", mailMessage); forward = "SendEmail"; } } } String version = ejb.bprocess.util.StaticValues.getInstance().getVersion(); if (version != null && !version.equals("")) { svF.setVersion(version); } if (session.getAttribute("ClassNoForwarded") != null) { session.removeAttribute("ClassNoForwarded"); } return mapping.findForward(forward); } | 886,549 |
0 | public static String getCssFile(String url) { StringBuffer buffer = new StringBuffer(); try { buffer = new StringBuffer(); URL urlToCrawl = new URL(url); URLConnection urlToCrawlConnection = urlToCrawl.openConnection(); urlToCrawlConnection.setRequestProperty("User-Agent", "USER_AGENT"); urlToCrawlConnection.setRequestProperty("Referer", "REFERER"); urlToCrawlConnection.setUseCaches(false); InputStreamReader isr = new InputStreamReader(urlToCrawlConnection.getInputStream()); BufferedReader in = new BufferedReader(isr); String str; while ((str = in.readLine()) != null) buffer.append(str); FileOutputStream fos = new FileOutputStream("c:\\downloads\\" + System.currentTimeMillis() + ".css"); Writer out = new OutputStreamWriter(fos); out.write(buffer.toString()); out.close(); } catch (Exception e) { System.out.println("Error Downloading css file" + e); } return buffer.toString(); } | private void importUrl() throws ExtractaException { UITools.changeCursor(UITools.WAIT_CURSOR, this); try { m_sUrlString = m_urlTF.getText(); URL url = new URL(m_sUrlString); Document document = DomHelper.parseHtml(url.openStream()); m_inputPanel.setDocument(document); Edl edl = new Edl(); edl.addUrlDescriptor(new UrlDescriptor(m_sUrlString)); m_resultPanel.setContext(new ResultContext(edl, document, url)); setModified(true); } catch (IOException ex) { throw new ExtractaException("Can not open URL!", ex); } finally { UITools.changeCursor(UITools.DEFAULT_CURSOR, this); } } | 886,550 |
1 | protected List<Datastream> getDatastreams(final DepositCollection pDeposit) throws IOException, SWORDException { List<Datastream> tDatastreams = super.getDatastreams(pDeposit); FileInputStream tInput = null; String tFileName = ((LocalDatastream) tDatastreams.get(0)).getPath(); String tTempFileName = this.getTempDir() + "uploaded-file.tmp"; IOUtils.copy(tInput = new FileInputStream(tFileName), new FileOutputStream(tTempFileName + ".thum")); tInput.close(); Datastream tThum = new LocalDatastream("THUMBRES_IMG", this.getContentType(), tTempFileName + ".thum"); tDatastreams.add(tThum); IOUtils.copy(tInput = new FileInputStream(tFileName), new FileOutputStream(tTempFileName + ".mid")); tInput.close(); Datastream tMid = new LocalDatastream("MEDRES_IMG", this.getContentType(), tTempFileName + ".mid"); tDatastreams.add(tMid); IOUtils.copy(tInput = new FileInputStream(tFileName), new FileOutputStream(tTempFileName + ".high")); tInput.close(); Datastream tLarge = new LocalDatastream("HIGHRES_IMG", this.getContentType(), tTempFileName + ".high"); tDatastreams.add(tLarge); IOUtils.copy(tInput = new FileInputStream(tFileName), new FileOutputStream(tTempFileName + ".vhigh")); tInput.close(); Datastream tVLarge = new LocalDatastream("VERYHIGHRES_IMG", this.getContentType(), tTempFileName + ".vhigh"); tDatastreams.add(tVLarge); return tDatastreams; } | public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } | 886,551 |
0 | public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | @Override public void exec() { BufferedReader in = null; try { URL url = new URL(getUrl()); in = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer result = new StringBuffer(); String str; while ((str = in.readLine()) != null) { result.append(str); } logger.info("received message: " + result); } catch (Exception e) { logger.error("HttpGetEvent could not execute", e); } finally { if (in != null) { try { in.close(); } catch (IOException e) { logger.error("BufferedReader could not be closed", e); } } } } | 886,552 |
0 | protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String servletPath = req.getServletPath(); String requestURI = req.getRequestURI(); String resource = requestURI.substring(requestURI.indexOf(servletPath) + servletPath.length()); URL url = ClassResource.get(resourceDirectory + resource); try { File file = null; JarEntry jarEntry = null; JarFile jarFile = null; if (!url.toExternalForm().startsWith("jar:")) { file = new File(url.toURI()); } else { jarFile = ((JarURLConnection) url.openConnection()).getJarFile(); String[] jarURL = url.toExternalForm().split("!"); jarEntry = jarFile.getJarEntry(jarURL[1].substring(1)); } if (file != null && file.isDirectory()) { PrintWriter writer = resp.getWriter(); resp.setContentType("text/html"); DevelUtils.writePageBegin(writer); DevelUtils.writeTitleAndHeaderEnd(writer, "Makumba resources"); if (SourceViewServlet.redirected(req, resp, servletPath)) { return; } String relativeDirectory = file.getName(); if (file.getAbsolutePath().indexOf(resourceDirectory) != -1) { relativeDirectory = file.getAbsolutePath().substring(file.getAbsolutePath().indexOf(resourceDirectory)); } SourceViewServlet.printDirlistingHeader(writer, file.getCanonicalPath(), relativeDirectory); if (!(relativeDirectory.equals(resourceDirectory))) { writer.println("<b><a href=\"../\">../</a></b> (up one level)"); } SourceViewServlet.processDirectory(writer, file, null); String[] list = file.list(); Arrays.sort(list); for (int i = 0; i < list.length; i++) { String s = list[i]; File f = new File(file.getAbsolutePath() + File.separator + s); if (f.isFile()) { writer.println("<b><a href=\"" + s + "\">" + s + "</a></b>"); } } writer.println("</pre>"); DevelUtils.writePageEnd(writer); resp.setHeader("Last-Modified", dfLastModified.format(new Date())); return; } else if (jarEntry != null && jarEntry.isDirectory()) { Enumeration<JarEntry> entries = jarFile.entries(); ArrayList<String> files = new ArrayList<String>(); ArrayList<String> directories = new ArrayList<String>(); PrintWriter writer = resp.getWriter(); resp.setContentType("text/html"); DevelUtils.writePageBegin(writer); DevelUtils.writeTitleAndHeaderEnd(writer, "Makumba resources"); if (SourceViewServlet.redirected(req, resp, servletPath)) { return; } String relativeDirectory = jarEntry.getName(); SourceViewServlet.printDirlistingHeader(writer, url.toExternalForm(), relativeDirectory); if (!relativeDirectory.equals(resourceDirectory) && !relativeDirectory.equals(resourceDirectory + "/")) { writer.println("<b><a href=\"../\">../</a></b> (up one level)"); } while (entries.hasMoreElements()) { JarEntry entry = (JarEntry) entries.nextElement(); if (entry.getName().startsWith(relativeDirectory)) { String s = entry.getName().substring(relativeDirectory.length()); while (s.length() > 0 && s.startsWith("/")) { s = s.substring(1); } if (s.indexOf("/") == -1) { if (s.length() > 0) { files.add(s); } } else if (s.indexOf("/") == s.lastIndexOf("/") && s.endsWith("/")) { if (s.endsWith("/")) { s = s.substring(0, s.length() - 1); } if (s.length() > 0) { directories.add(s); } } } } for (String string : directories) { writer.println("<b><a href=\"" + string + "/\">" + string + "/</a></b>"); } for (String string : files) { writer.println("<b><a href=\"" + string + "\">" + string + "</a></b>"); } writer.println("</pre>"); DevelUtils.writePageEnd(writer); resp.setHeader("Last-Modified", dfLastModified.format(new Date())); return; } else { final Date lastModified; if (url.toExternalForm().startsWith("jar:")) { JarFile jf = ((JarURLConnection) url.openConnection()).getJarFile(); String[] jarURL = url.toExternalForm().split("!"); lastModified = new Date(jf.getJarEntry(jarURL[1].substring(1)).getTime()); } else { lastModified = new Date(new File(url.toURI()).lastModified()); } resp.setHeader("Last-Modified", dfLastModified.format(lastModified)); resp.setContentType(getContentType(url)); Object cachedResource = NamedResources.getStaticCache(makumbaResources).getResource(resource); ServletOutputStream outputStream = resp.getOutputStream(); if (isBinary(url)) { for (int i = 0; i < ((byte[]) cachedResource).length; i++) { outputStream.write(((byte[]) cachedResource)[i]); } } else { outputStream.print(cachedResource.toString()); } } } catch (URISyntaxException e) { e.printStackTrace(); } } | public static String harvestForUser(Node userNode, String alias, Boolean all) { FTPClient client = new FTPClient(); OutputStream outStream = null; Calendar filterCal = Calendar.getInstance(); filterCal.set(Calendar.DAY_OF_MONTH, filterCal.get(Calendar.DAY_OF_MONTH) - 1); Date aDayAgo = filterCal.getTime(); String outputRecord = ""; try { Session session = CustomSystemSession.create(r); client.connect(ftpHostname); client.login(ftpUsername, ftpPassword); FTPFile[] users = client.listFiles(); if (users != null) { for (FTPFile user : users) { String userName = user.getName(); if (alias.equals(userName)) { outputRecord += "Found account " + userName + ".\n"; client.changeWorkingDirectory("/" + userName + "/"); FTPFile[] experiments = client.listFiles(); if (experiments != null && userNode != null) { for (FTPFile experiment : experiments) { String experimentName = experiment.getName(); outputRecord += "Exploring " + userName + "/" + experimentName + ".\n"; client.changeWorkingDirectory("/" + userName + "/" + experimentName + "/"); FTPFile[] datasets = client.listFiles(); if (datasets != null) { for (FTPFile dataset : datasets) { String datasetName = dataset.getName(); outputRecord += "Exploring " + userName + "/" + experimentName + "/" + datasetName + ".\n"; client.changeWorkingDirectory("/" + userName + "/" + experimentName + "/" + datasetName + "/"); Date collectionDate = dataset.getTimestamp().getTime(); if (collectionDate.after(aDayAgo) || all) { FTPFile[] images = client.listFiles(); if (images != null) { for (FTPFile image : images) { outputRecord += processImage(userName, experimentName, datasetName, collectionDate, image, client, userNode, session); } } } } } } } } } } client.logout(); } catch (IOException ioe) { log.info("Error communicating with FTP server."); log.error("Error communicating with FTP server.", ioe); ioe.printStackTrace(); } catch (RepositoryException ioe) { log.info("Error communicating with repository."); log.error("Error communicating with repository.", ioe); ioe.printStackTrace(); } finally { IOUtils.closeQuietly(outStream); try { client.disconnect(); } catch (IOException e) { log.error("Problem disconnecting from FTP server", e); } } return outputRecord; } | 886,553 |
0 | @Override public void run() { try { File dest = new File(location); if ((dest.getParent() != null && !dest.getParentFile().isDirectory() && !dest.getParentFile().mkdirs())) { throw new IOException("Impossible de créer un dossier (" + dest.getParent() + ")."); } else if (dest.exists() && !dest.delete()) { throw new IOException("Impossible de supprimer un ancien fichier (" + dest + ")."); } else if (!dest.createNewFile()) { throw new IOException("Impossible de créer un fichier (" + dest + ")."); } FileChannel in = new FileInputStream(file).getChannel(); FileChannel out = new FileOutputStream(dest).getChannel(); try { in.transferTo(0, in.size(), out); } finally { in.close(); out.close(); } } catch (Exception e) { Main.fenetre().erreur(Fenetre.ERREUR_FATALE_UPDATE, e); } finally { file.delete(); } } | private void getPicture(String urlPath, String picId) throws Exception { URL url = new URL(urlPath); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setRequestMethod("GET"); conn.setConnectTimeout(10000); if (conn.getResponseCode() == 200) { InputStream inputStream = conn.getInputStream(); byte[] data = readStream(inputStream); File file = new File(picDirectory + picId); FileOutputStream outputStream = new FileOutputStream(file); outputStream.write(data); outputStream.close(); } conn.disconnect(); } | 886,554 |
1 | public static File copyFile(File from, File to) throws IOException { FileOutputStream fos = new FileOutputStream(to); FileInputStream fis = new FileInputStream(from); FileChannel foc = fos.getChannel(); FileChannel fic = fis.getChannel(); foc.transferFrom(fic, 0, fic.size()); foc.close(); fic.close(); return to; } | public static void copyFile(File sourceFile, File destFile) throws IOException { InputStream is = null; OutputStream os = null; try { is = new FileInputStream(sourceFile); os = new FileOutputStream(destFile); IOUtils.copy(is, os); } finally { try { if (os != null) os.close(); } catch (Exception e) { } try { if (is != null) is.close(); } catch (Exception e) { } } } | 886,555 |
0 | private void copyThemeProviderClass() throws Exception { InputStream is = getClass().getResourceAsStream("/zkthemer/ThemeProvider.class"); if (is == null) throw new RuntimeException("Cannot find ThemeProvider.class"); File outFile = new File(theme.getJarRootFile(), "zkthemer/ThemeProvider.class"); outFile.getParentFile().mkdirs(); FileOutputStream out = new FileOutputStream(outFile); IOUtils.copy(is, out); out.close(); FileUtils.writeStringToFile(new File(theme.getJarRootFile(), "zkthemer.properties"), "theme=" + theme.getName() + "\r\nfileList=" + fileList.deleteCharAt(fileList.length() - 1).toString()); } | public void ztest_cluster() throws Exception { Configuration.init(); TomcatServer ts1 = new TomcatServer(); ts1.registerServlet("/*", TestServlet.class.getName()); ts1.registerCluster(5554); ts1.start(5555); TomcatServer ts2 = new TomcatServer(); ts2.registerServlet("/*", TestServlet.class.getName()); ts2.registerCluster(5554); ts2.start(5556); URL url1 = new URL("http://127.0.0.1:5555/a"); HttpURLConnection c1 = (HttpURLConnection) url1.openConnection(); assert getData(c1).equals("a null"); String cookie = c1.getHeaderField("Set-Cookie"); Thread.sleep(5000); URL url2 = new URL("http://127.0.0.1:5556/a"); HttpURLConnection c2 = (HttpURLConnection) url2.openConnection(); c2.setRequestProperty("Cookie", cookie); assert getData(c2).equals("a a"); } | 886,556 |
0 | public void doAction() throws MalformedURLException, IOException, Exception { URL url = new URL(CheckNewVersionAction.VERSION_FILE); InputStream is = url.openStream(); byte[] buffer = Utils.loadBytes(is); is.close(); String version = new String(buffer); if (version != null) { version = version.substring(0, version.lastIndexOf("\n") == -1 ? version.length() : version.lastIndexOf("\n")); } hasNewVersion = !DAOSystem.getSystem().getVersion().equals(version); } | private Bitmap fetchImage(String urlstr) throws Exception { URL url; url = new URL(urlstr); HttpURLConnection c = (HttpURLConnection) url.openConnection(); c.setDoInput(true); c.setRequestProperty("User-Agent", "Agent"); c.connect(); InputStream is = c.getInputStream(); Bitmap img; img = BitmapFactory.decodeStream(is); return img; } | 886,557 |
0 | public static void copyFile(File src, File dst) throws IOException { if (T.t) T.info("Copying " + src + " -> " + dst + "..."); FileInputStream in = new FileInputStream(src); FileOutputStream out = new FileOutputStream(dst); byte buf[] = new byte[40 * KB]; int read; while ((read = in.read(buf)) != -1) { out.write(buf, 0, read); } out.flush(); out.close(); in.close(); if (T.t) T.info("File copied."); } | @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String requestPath = req.getRequestURI(); String cdecUrl = "http://cdec.water.ca.gov" + requestPath + "?" + req.getQueryString(); System.out.println("CDEC URL: " + cdecUrl); URL url = new URL(cdecUrl); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer buffer = new StringBuffer(); String line = null; int ncolumnInner = 0; while ((line = reader.readLine()) != null) { if (line.contains("<div class=\"column_inner\"")) { ncolumnInner++; } if (ncolumnInner == 2) { if (line.contains("</div>")) { break; } if (line.contains("href")) { line = line.replaceAll("href", " target=\"external_page\" href"); } if (line.contains("http://cdec.water.ca.gov:80")) { line = line.replaceAll("http://cdec.water.ca.gov:80/", "/"); } if (line.contains("href=")) { line = line.replaceAll("(href=\"|href=)", "$1http://cdec.water.ca.gov"); } buffer.append(line); } else { continue; } } resp.getWriter().write(buffer.toString()); resp.getWriter().flush(); reader.close(); } | 886,558 |
0 | public static void copyFile(File src, File dst) throws IOException { InputStream in = new FileInputStream(src); OutputStream out = new FileOutputStream(dst); byte[] buf = new byte[1024]; int len; while ((len = in.read(buf)) > 0) out.write(buf, 0, len); in.close(); out.close(); } | public void actionPerformed(java.awt.event.ActionEvent e) { try { setStatus(DigestSignTask.RESET, ""); if (e.getSource() == sd) if (retriveEncodedDigestFromServer()) setStatus(DigestSignTask.RESET, "Inserire il pin e battere INVIO per firmare."); if (e.getSource() == pwd) { initStatus(0, DigestSignTask.SIGN_MAXIMUM); if (detectCardAndCriptoki()) { dsTask = new DigestSignTask(getCryptokiLib(), getSignerLabel(), log); timer = new Timer(ONE_SECOND, new java.awt.event.ActionListener() { public void actionPerformed(java.awt.event.ActionEvent evt) { setStatus(dsTask.getCurrent(), dsTask.getMessage()); if (dsTask.done()) { timer.stop(); progressBar.setValue(progressBar.getMinimum()); if (dsTask.getCurrent() == DigestSignTask.SIGN_DONE) { Toolkit.getDefaultToolkit().beep(); setEncryptedDigest(dsTask.getEncryptedDigest()); returnEncryptedDigestToForm(); setCertificate(dsTask.getCertificate()); returnCertificateToForm(); if (getSubmitAfterSigning()) { submitForm(); } } enableControls(true); } } }); sign(); } } if (e.getSource() == enc) { log.println("\nCalculating digest ...\n"); java.security.MessageDigest md5 = java.security.MessageDigest.getInstance("MD5"); md5.update(dataArea.getText().getBytes("UTF8")); byte[] digest = md5.digest(); log.println("digest:\n" + formatAsHexString(digest)); log.println("Done."); setEncodedDigest(encodeFromBytes(digest)); returnDigestToForm(); } if (e.getSource() == ld) retriveEncodedDigestFromForm(); if (e.getSource() == led) retriveEncryptedDigestFromForm(); if (e.getSource() == v) { verify(); } } catch (Exception ex) { log.println(ex.toString()); } finally { pwd.setText(""); } } | 886,559 |
0 | public boolean receiveFile(FileDescriptor fileDescriptor) { try { byte[] block = new byte[1024]; int sizeRead = 0; int totalRead = 0; File dir = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation()); if (!dir.exists()) { dir.mkdirs(); } File file = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation() + fileDescriptor.getName()); if (!file.exists()) { file.createNewFile(); } SSLSocket sslsocket = getFileTransferConectionConnectMode(ServerAdress.getServerAdress()); OutputStream fileOut = new FileOutputStream(file); InputStream dataIn = sslsocket.getInputStream(); while ((sizeRead = dataIn.read(block)) >= 0) { totalRead += sizeRead; fileOut.write(block, 0, sizeRead); propertyChangeSupport.firePropertyChange("fileByte", 0, totalRead); } fileOut.close(); dataIn.close(); sslsocket.close(); if (fileDescriptor.getName().contains(".snapshot")) { try { File fileData = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation() + fileDescriptor.getName()); File dirData = new File(Constants.PREVAYLER_DATA_DIRETORY + Constants.FILE_SEPARATOR); File destino = new File(dirData, fileData.getName()); boolean success = fileData.renameTo(destino); if (!success) { deleteDir(Constants.DOWNLOAD_DIR); return false; } deleteDir(Constants.DOWNLOAD_DIR); } catch (Exception e) { e.printStackTrace(); } } else { if (Server.isServerOpen()) { FileChannel inFileChannel = new FileInputStream(file).getChannel(); File dirServer = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getLocation()); if (!dirServer.exists()) { dirServer.mkdirs(); } File fileServer = new File(Constants.DOWNLOAD_DIR + fileDescriptor.getName()); if (!fileServer.exists()) { fileServer.createNewFile(); } inFileChannel.transferTo(0, inFileChannel.size(), new FileOutputStream(fileServer).getChannel()); inFileChannel.close(); } } if (totalRead == fileDescriptor.getSize()) { return true; } } catch (Exception e) { logger.error("Receive File:", e); } return false; } | private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } } | 886,560 |
0 | @Override public void call(String soapAction, SoapEnvelope envelope) throws IOException, XmlPullParserException { if (soapAction == null) { soapAction = "\"\""; } byte[] requestData = createRequestData(envelope); requestDump = debug ? new String(requestData) : null; responseDump = null; HttpPost method = new HttpPost(url); method.addHeader("User-Agent", "kSOAP/2.0-Excilys"); method.addHeader("SOAPAction", soapAction); method.addHeader("Content-Type", "text/xml"); HttpEntity entity = new ByteArrayEntity(requestData); method.setEntity(entity); HttpResponse response = httpClient.execute(method); InputStream inputStream = response.getEntity().getContent(); if (debug) { ByteArrayOutputStream bos = new ByteArrayOutputStream(); byte[] buf = new byte[256]; while (true) { int rd = inputStream.read(buf, 0, 256); if (rd == -1) { break; } bos.write(buf, 0, rd); } bos.flush(); buf = bos.toByteArray(); responseDump = new String(buf); inputStream.close(); inputStream = new ByteArrayInputStream(buf); } parseResponse(envelope, inputStream); inputStream.close(); } | public boolean login(String strUrl, String loginName, String loginPwd) throws ApplicationException { String starter = "-----------------------------"; String returnChar = "\r\n"; String lineEnd = "--"; String urlString = strUrl; String input = null; List txtList = new ArrayList(); List fileList = new ArrayList(); String targetFile = null; String actionStatus = null; StringBuffer returnMessage = new StringBuffer(); List head = new ArrayList(); final String boundary = String.valueOf(System.currentTimeMillis()); URL url = null; URLConnection conn = null; BufferedReader br = null; DataOutputStream dos = null; boolean isLogin = false; txtList.add(new HtmlFormText("loginName", loginName)); txtList.add(new HtmlFormText("loginPwd", loginPwd)); txtList.add(new HtmlFormText("navMode", "I")); txtList.add(new HtmlFormText("action", "login")); try { url = new URL(urlString); conn = url.openConnection(); ((HttpURLConnection) conn).setRequestMethod("POST"); conn.setDoInput(true); conn.setDoOutput(true); conn.setUseCaches(false); conn.setRequestProperty("Content-Type", "multipart/form-data, boundary=" + "---------------------------" + boundary); if (input != null) { String auth = "Basic " + new sun.misc.BASE64Encoder().encode(input.getBytes()); conn.setRequestProperty("Authorization", auth); } dos = new DataOutputStream(conn.getOutputStream()); dos.write((starter + boundary + returnChar).getBytes()); for (int i = 0; i < txtList.size(); i++) { HtmlFormText htmltext = (HtmlFormText) txtList.get(i); dos.write(htmltext.getTranslated()); if (i + 1 < txtList.size()) { dos.write((starter + boundary + returnChar).getBytes()); } else if (fileList.size() > 0) { dos.write((starter + boundary + returnChar).getBytes()); } } dos.write((starter + boundary + "--" + returnChar).getBytes()); dos.flush(); br = new BufferedReader(new InputStreamReader(conn.getInputStream())); String cookieVal = conn.getHeaderField(HEADER_SETCOOKIE); if (cookieVal != null) { cookie = cookieVal.substring(0, cookieVal.indexOf(";")); } String tempstr; int line = 0; while (null != ((tempstr = br.readLine()))) { if (!tempstr.equals("")) { if ("window.location.replace(\"/Home.do\");".indexOf(returnMessage.append(formatLine(tempstr)).toString()) != -1) { isLogin = true; break; } line++; } } txtList.clear(); fileList.clear(); } catch (Exception e) { log.error(e, e); throw new ApplicationException(FormErrorConstant.DB_APP_BASE_URL_ERROR); } finally { try { dos.close(); } catch (Exception e) { } try { br.close(); } catch (Exception e) { } } return isLogin; } | 886,561 |
1 | private void foundNewVersion() { updater = new UpdaterView(); updater.setLabelText("Initiating Updater..."); updater.setProgress(0); updater.setLocationRelativeTo(null); updater.setVisible(true); URL pathUrl = ClassLoader.getSystemResource("img/icon.png"); String path = pathUrl.toString(); path = path.substring(4, path.length() - 14); try { file = new File(new URI(path)); updaterFile = new File(new URI(path.substring(0, path.length() - 4) + "Updater.jar")); if (updaterFile.exists()) { updaterFile.delete(); } updater.setProgress(25); SwingUtilities.invokeLater(new Runnable() { public void run() { try { FileChannel in = (new FileInputStream(file)).getChannel(); FileChannel out = (new FileOutputStream(updaterFile)).getChannel(); in.transferTo(0, file.length(), out); updater.setProgress(50); in.close(); out.close(); } catch (IOException e) { e.printStackTrace(); } startUpdater(); } }); } catch (URISyntaxException e) { e.printStackTrace(); JOptionPane.showMessageDialog(null, "Update error! Could not create Updater. Check folder permission.", "Error", JOptionPane.ERROR_MESSAGE); } } | private static URL downloadFile(URL url, File destFile) throws Exception { try { URLConnection urlConnection = url.openConnection(); File tmpFile = null; try { tmpFile = File.createTempFile("remoteLib_", null); InputStream in = null; FileOutputStream out = null; try { in = urlConnection.getInputStream(); out = new FileOutputStream(tmpFile); IOUtils.copy(in, out); } finally { if (out != null) { out.close(); } if (in != null) { in.close(); } } FileUtils.copyFile(tmpFile, destFile); } finally { if (tmpFile != null) { tmpFile.delete(); } } URL localURL = destFile.toURI().toURL(); return localURL; } catch (Exception ex) { throw new RuntimeException("Could not download URL: " + url, ex); } } | 886,562 |
0 | private void verifyAvailability() { for (int i = 0; i < servers.size(); i++) { String hostEntry = (String) servers.get(i); String hostString = hostEntry.substring(0, hostEntry.indexOf(":")); String portString = hostEntry.substring(hostEntry.indexOf(":") + 1); String urlLocation = "http://" + hostString + ":" + portString + "/"; String urlData = null; String urlMatch = null; long startTime = System.currentTimeMillis(); URL url = null; HttpURLConnection conn = null; InputStream istream = null; if (serverRequests.get(hostEntry) != null) { String requestData = (String) serverRequests.get(hostEntry); urlData = requestData.substring(0, requestData.indexOf("\t")); try { urlMatch = requestData.substring(requestData.indexOf("\t") + 1); } catch (Exception e) { urlMatch = null; } urlLocation = "http://" + hostString + ":" + portString + "/" + urlData; } try { url = new URL(urlLocation); conn = (HttpURLConnection) url.openConnection(); } catch (Exception e) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': " + e.getMessage()); serverTimes.put(hostEntry, "0"); continue; } try { istream = conn.getInputStream(); } catch (Exception e) { try { if (conn.getResponseCode() != 401) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': " + e); serverTimes.put(hostEntry, "0"); continue; } } catch (Exception ee) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': " + e); serverTimes.put(hostEntry, "0"); continue; } } int response = 501; try { response = conn.getResponseCode(); if (response != 200 && response != 401) { System.err.println("*** Warning: Connection to host '" + hostEntry + "' returns response: " + response); serverTimes.put(hostEntry, "0"); continue; } } catch (Exception e) { System.err.println("*** Warning: Unable to contact host '" + hostString + "' on port '" + portString + "'"); serverTimes.put(hostEntry, "0"); continue; } if (response != 401) { int contentLength = conn.getContentLength(); if (contentLength == -1) { contentLength = 4096; } byte data[] = new byte[contentLength]; int curPos = 0; try { int dataRead = 0; while ((dataRead = istream.read(data, curPos, contentLength - curPos)) != -1) { if (dataRead == 0) { break; } curPos += dataRead; } } catch (Exception e) { System.err.println("*** Warning: Unable to contact host '" + hostEntry + "': Cannot read response from site."); serverTimes.put(hostEntry, "0"); continue; } if (urlMatch != null) { String urlContents = new String(data); data = null; if (urlContents.indexOf(urlMatch) == -1) { System.err.println("*** Warning: Host '" + hostEntry + "' does not match search string. Reports '" + urlContents + "'"); try { istream.close(); conn.disconnect(); } catch (Exception e) { } serverTimes.put(hostEntry, "0"); continue; } } } try { istream.close(); conn.disconnect(); } catch (Exception e) { } serverStatus.put(hostEntry, "1"); String timeResponse = Long.toString(System.currentTimeMillis() - startTime); Debug.log("Response time for '" + hostEntry + "' is " + timeResponse + " ms."); serverTimes.put(hostEntry, timeResponse); } } | @Override public void run() { try { if (!Util.isSufficienDataForUpload(recordedGeoPoints)) return; final InputStream gpxInputStream = new ByteArrayInputStream(RecordedRouteGPXFormatter.create(recordedGeoPoints).getBytes()); final HttpClient httpClient = new DefaultHttpClient(); final HttpPost request = new HttpPost(UPLOADSCRIPT_URL); final MultipartEntity requestEntity = new MultipartEntity(); requestEntity.addPart("gpxfile", new InputStreamBody(gpxInputStream, "" + System.currentTimeMillis() + ".gpx")); httpClient.getParams().setBooleanParameter("http.protocol.expect-continue", false); request.setEntity(requestEntity); final HttpResponse response = httpClient.execute(request); final int status = response.getStatusLine().getStatusCode(); if (status != HttpStatus.SC_OK) { logger.error("GPXUploader", "status != HttpStatus.SC_OK"); } else { final Reader r = new InputStreamReader(new BufferedInputStream(response.getEntity().getContent())); final char[] buf = new char[8 * 1024]; int read; final StringBuilder sb = new StringBuilder(); while ((read = r.read(buf)) != -1) sb.append(buf, 0, read); logger.debug("GPXUploader", "Response: " + sb.toString()); } } catch (final Exception e) { } } | 886,563 |
0 | private static boolean isXmlApplicationFile(URL url) throws java.io.IOException { if (DEBUG) { System.out.println("Checking whether file is xml"); } String firstLine; BufferedReader fileReader = null; try { fileReader = new BomStrippingInputStreamReader(url.openStream()); firstLine = fileReader.readLine(); } finally { if (fileReader != null) fileReader.close(); } if (firstLine == null) { return false; } for (String startOfXml : STARTOFXMLAPPLICATIONFILES) { if (firstLine.length() >= startOfXml.length() && firstLine.substring(0, startOfXml.length()).equals(startOfXml)) { if (DEBUG) { System.out.println("isXMLApplicationFile = true"); } return true; } } if (DEBUG) { System.out.println("isXMLApplicationFile = false"); } return false; } | @Test public void testRegister() { try { String username = "muchu"; String password = "123"; MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(password.getBytes()); String passwordMd5 = new String(md5.digest()); LogService logServiceMock = EasyMock.createMock(LogService.class); DbService dbServiceMock = EasyMock.createMock(DbService.class); userServ.setDbServ(dbServiceMock); userServ.setLogger(logServiceMock); IFeelerUser user = new FeelerUserImpl(); user.setUsername(username); user.setPassword(passwordMd5); logServiceMock.info(DbUserServiceImpl.class, ">>>rigister " + username + "<<<"); EasyMock.expect(dbServiceMock.queryFeelerUser(username)).andReturn(null); dbServiceMock.addFeelerUser(username, passwordMd5); logServiceMock.info(DbUserServiceImpl.class, ">>>identification " + username + "<<<"); EasyMock.expect(dbServiceMock.queryFeelerUser(username)).andReturn(user); EasyMock.replay(dbServiceMock, logServiceMock); Assert.assertTrue(userServ.register(username, password)); EasyMock.verify(dbServiceMock, logServiceMock); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } } | 886,564 |
0 | public void testReadNormal() throws Exception { archiveFileManager.executeWith(new TemporaryFileExecutor() { public void execute(File temporaryFile) throws Exception { ZipArchive archive = new ZipArchive(temporaryFile.getPath()); InputStream input = archive.getInputFrom(ARCHIVE_FILE_1); if (input != null) { ByteArrayOutputStream output = new ByteArrayOutputStream(); IOUtils.copyAndClose(input, output); assertEquals(ARCHIVE_FILE_1 + " contents not correct", ARCHIVE_FILE_1_CONTENT, output.toString()); } else { fail("cannot open " + ARCHIVE_FILE_1); } } }); } | public HttpURLConnection getURLConnection() throws IOException { String url_str = getServerURL(); URL url = new URL(url_str); HttpURLConnection urlConnection; if (url_str.toLowerCase().startsWith("https")) { HttpsURLConnection urlSConnection = (HttpsURLConnection) url.openConnection(); urlSConnection.setHostnameVerifier(new HostnameVerifier() { public boolean verify(String hostname, SSLSession session) { return true; } }); urlConnection = urlSConnection; } else urlConnection = (HttpURLConnection) url.openConnection(); urlConnection.setRequestMethod("POST"); if (useHTTPProxy && getProxyLogin() != null) { String authString = getProxyLogin() + ":" + getProxyPassword(); String auth = "Basic " + new sun.misc.BASE64Encoder().encode(authString.getBytes()); urlConnection.setRequestProperty("Proxy-Authorization", auth); } urlConnection.setDoOutput(true); if (useHTTPProxy) { System.getProperties().put("proxySet", "true"); System.getProperties().put("proxyHost", proxyHost); System.getProperties().put("proxyPort", String.valueOf(proxyPort)); } return urlConnection; } | 886,565 |
0 | public int read(String name) { status = STATUS_OK; try { name = name.trim().toLowerCase(); if ((name.indexOf("file:") >= 0) || (name.indexOf(":/") > 0)) { URL url = new URL(name); in = new BufferedInputStream(url.openStream()); } else { in = new BufferedInputStream(new FileInputStream(name)); } status = read(in); } catch (IOException e) { status = STATUS_OPEN_ERROR; } return status; } | public XmlDocument parseLocation(String locationUrl) { URL url = null; try { url = new URL(locationUrl); } catch (MalformedURLException e) { throw new XmlBuilderException("could not parse URL " + locationUrl, e); } try { return parseInputStream(url.openStream()); } catch (IOException e) { throw new XmlBuilderException("could not open connection to URL " + locationUrl, e); } } | 886,566 |
0 | @SuppressWarnings("unused") private GraphicalViewer createGraphicalViewer(Composite parent) { GraphicalViewer viewer = new ScrollingGraphicalViewer(); viewer.createControl(parent); viewer.getControl().setBackground(parent.getBackground()); viewer.setRootEditPart(new ScalableFreeformRootEditPart()); viewer.setKeyHandler(new GraphicalViewerKeyHandler(viewer)); getEditDomain().addViewer(viewer); getSite().setSelectionProvider(viewer); viewer.setEditPartFactory(getEditPartFactory()); viewer.setContents(getContent()); return viewer; } | public static String getFurigana(String sentence) throws Exception { Log.d("--VOA--", "getFurigana START"); sbFurigana = new StringBuffer(); String urlStr = getYahooApiURL(); urlStr = addSentence(urlStr, sentence); URL url = new URL(urlStr); URLConnection uc = url.openConnection(); DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); dbf.setNamespaceAware(true); DocumentBuilder db = dbf.newDocumentBuilder(); Log.d("--VOA--", uc.getURL().toString()); InputStream is = uc.getInputStream(); doc = db.parse(is); walkThrough(); Log.d("--VOA--", "getFurigana END"); return sbFurigana.toString(); } | 886,567 |
1 | private static MapEntry<String, Properties> loadFpmConf() throws ConfigurationReadException { MapEntry<String, Properties> ret = null; Scanner sc = new Scanner(CONF_PATHS).useDelimiter(SEP_P); String prev = ""; while (sc.hasNext() && !hasLoaded) { Properties fpmConf = null; boolean relative = false; String path = sc.next(); if (path.startsWith(PREV_P)) { path = path.replace(PREV_P, prev.substring(0, prev.length() - 1)); } else if (path.startsWith(REL_P)) { path = path.replace(REL_P + FS, ""); relative = true; } else if (path.contains(HOME_P)) { path = path.replace(HOME_P, USER_HOME); } prev = path; path = path.concat(MAIN_CONF_FILE); try { InputStream is = null; if (relative) { is = ClassLoader.getSystemResourceAsStream(path); path = getSystemConfDir(); Strings.getOne().createPath(path); path += MAIN_CONF_FILE; FileOutputStream os = new FileOutputStream(path); IOUtils.copy(is, os); os.flush(); os.close(); os = null; } else { is = new FileInputStream(path); } fpmConf = new Properties(); fpmConf.load(is); if (fpmConf.isEmpty()) { throw new ConfigurationReadException(); } ret = new MapEntry<String, Properties>(path, fpmConf); hasLoaded = true; } catch (FileNotFoundException e) { fpmConf = null; singleton = null; hasLoaded = false; } catch (IOException e) { throw new ConfigurationReadException(); } } return ret; } | public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } | 886,568 |
0 | static String MD5(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); } | public static boolean copy(File from, File to) { if (from.isDirectory()) { for (String name : Arrays.asList(from.list())) { if (!copy(from, to, name)) { LogUtils.info("Failed to copy " + name + " from " + from + " to " + to, null); return false; } } } else { try { FileInputStream is = new FileInputStream(from); FileChannel ifc = is.getChannel(); FileOutputStream os = makeFile(to); if (USE_NIO) { FileChannel ofc = os.getChannel(); ofc.transferFrom(ifc, 0, from.length()); } else { pipe(is, os, false); } is.close(); os.close(); } catch (IOException ex) { LogUtils.warning("Failed to copy " + from + " to " + to, ex); return false; } } long time = from.lastModified(); setLastModified(to, time); long newtime = to.lastModified(); if (newtime != time) { LogUtils.info("Failed to set timestamp for file " + to + ": tried " + new Date(time) + ", have " + new Date(newtime), null); to.setLastModified(time); long morenewtime = to.lastModified(); return false; } return time == newtime; } | 886,569 |
1 | private static final void addFile(ZipArchiveOutputStream os, File file, String prefix) throws IOException { ArchiveEntry entry = os.createArchiveEntry(file, file.getAbsolutePath().substring(prefix.length() + 1)); os.putArchiveEntry(entry); FileInputStream fis = new FileInputStream(file); IOUtils.copy(fis, os); fis.close(); os.closeArchiveEntry(); } | public static final void copyFile(String srcFilename, String dstFilename) throws IOException { FileInputStream fis = null; FileOutputStream fos = null; FileChannel ifc = null; FileChannel ofc = null; Util.copyBuffer.clear(); try { fis = new FileInputStream(srcFilename); ifc = fis.getChannel(); fos = new FileOutputStream(dstFilename); ofc = fos.getChannel(); int sz = (int) ifc.size(); int n = 0; while (n < sz) { if (ifc.read(Util.copyBuffer) < 0) { break; } Util.copyBuffer.flip(); n += ofc.write(Util.copyBuffer); Util.copyBuffer.compact(); } } finally { try { if (ifc != null) { ifc.close(); } else if (fis != null) { fis.close(); } } catch (IOException exc) { } try { if (ofc != null) { ofc.close(); } else if (fos != null) { fos.close(); } } catch (IOException exc) { } } } | 886,570 |
0 | public String hash(String plainTextPassword) { try { MessageDigest digest = MessageDigest.getInstance(digestAlgorithm); digest.update(plainTextPassword.getBytes(charset)); byte[] rawHash = digest.digest(); return new String(org.jboss.seam.util.Hex.encodeHex(rawHash)); } catch (NoSuchAlgorithmException e) { log.error("Digest algorithm #0 to calculate the password hash will not be supported.", digestAlgorithm); throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { log.error("The Character Encoding #0 is not supported", charset); throw new RuntimeException(e); } } | public T_Result unmarshall(URL url) throws SAXException, ParserConfigurationException, IOException { XMLReader parser = getParserFactory().newSAXParser().getXMLReader(); parser.setContentHandler(getContentHandler()); parser.setDTDHandler(getContentHandler()); parser.setEntityResolver(getContentHandler()); parser.setErrorHandler(getContentHandler()); InputSource inputSource = new InputSource(url.openStream()); inputSource.setSystemId(url.toString()); parser.parse(inputSource); return contentHandler.getRootObject(); } | 886,571 |
0 | private Scanner getUrlScanner(String strUrl) { URL urlParticipants = null; Scanner scannerParticipants; try { urlParticipants = new URL(strUrl); URLConnection connParticipants; if (StringUtils.isBlank(this.configProxyIp)) { connParticipants = urlParticipants.openConnection(); } else { SocketAddress address = new InetSocketAddress(this.configProxyIp, this.configProxyPort); Proxy proxy = new Proxy(Proxy.Type.HTTP, address); connParticipants = urlParticipants.openConnection(proxy); } InputStream streamParticipant = connParticipants.getInputStream(); String charSet = StringUtils.substringAfterLast(connParticipants.getContentType(), "charset="); scannerParticipants = new Scanner(streamParticipant, charSet); } catch (MalformedURLException e) { throw new IcehorsetoolsRuntimeException(MessageFormat.format(Lang.get(this.getClass(), "MalformedURLException"), new Object[] { urlParticipants.toString() })); } catch (IOException e) { throw new IcehorsetoolsRuntimeException(MessageFormat.format(Lang.get(this.getClass(), "IOException"), new Object[] { urlParticipants.toString() })); } return scannerParticipants; } | @Override public LispObject execute(LispObject first, LispObject second) throws ConditionThrowable { Pathname zipfilePathname = coerceToPathname(first); byte[] buffer = new byte[4096]; try { String zipfileNamestring = zipfilePathname.getNamestring(); if (zipfileNamestring == null) return error(new SimpleError("Pathname has no namestring: " + zipfilePathname.writeToString())); ZipOutputStream out = new ZipOutputStream(new FileOutputStream(zipfileNamestring)); LispObject list = second; while (list != NIL) { Pathname pathname = coerceToPathname(list.CAR()); String namestring = pathname.getNamestring(); if (namestring == null) { out.close(); File zipfile = new File(zipfileNamestring); zipfile.delete(); return error(new SimpleError("Pathname has no namestring: " + pathname.writeToString())); } File file = new File(namestring); FileInputStream in = new FileInputStream(file); ZipEntry entry = new ZipEntry(file.getName()); out.putNextEntry(entry); int n; while ((n = in.read(buffer)) > 0) out.write(buffer, 0, n); out.closeEntry(); in.close(); list = list.CDR(); } out.close(); } catch (IOException e) { return error(new LispError(e.getMessage())); } return zipfilePathname; } | 886,572 |
1 | public void covertFile(File file) throws IOException { if (!file.isFile()) { return; } Reader reader = null; OutputStream os = null; File newfile = null; String filename = file.getName(); boolean succeed = false; try { newfile = new File(file.getParentFile(), filename + ".bak"); reader = new InputStreamReader(new FileInputStream(file), fromEncoding); os = new FileOutputStream(newfile); IOUtils.copy(reader, os, toEncoding); } catch (Exception e) { e.printStackTrace(); throw new IOException("Encoding error for file [" + file.getAbsolutePath() + "]"); } finally { if (reader != null) { try { reader.close(); } catch (Exception e) { e.printStackTrace(); } } if (os != null) { try { os.close(); } catch (Exception e) { e.printStackTrace(); } } } try { file.delete(); succeed = newfile.renameTo(file); } catch (Exception e) { throw new IOException("Clear bak error for file [" + file.getAbsolutePath() + "]"); } if (succeed) { System.out.println("Changed encoding for file [" + file.getAbsolutePath() + "]"); } } | private static void copyFile(String fromFile, String toFile) throws Exception { FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } } | 886,573 |
1 | @TestTargets({ @TestTargetNew(level = TestLevel.PARTIAL_COMPLETE, notes = "Verifies that the ObjectInputStream constructor calls checkPermission on security manager.", method = "ObjectInputStream", args = { InputStream.class }) }) public void test_ObjectInputStream2() throws IOException { class TestSecurityManager extends SecurityManager { boolean called; Permission permission; void reset() { called = false; permission = null; } @Override public void checkPermission(Permission permission) { if (permission instanceof SerializablePermission) { called = true; this.permission = permission; } } } class TestObjectInputStream extends ObjectInputStream { TestObjectInputStream(InputStream s) throws StreamCorruptedException, IOException { super(s); } } class TestObjectInputStream_readFields extends ObjectInputStream { TestObjectInputStream_readFields(InputStream s) throws StreamCorruptedException, IOException { super(s); } @Override public GetField readFields() throws IOException, ClassNotFoundException, NotActiveException { return super.readFields(); } } class TestObjectInputStream_readUnshared extends ObjectInputStream { TestObjectInputStream_readUnshared(InputStream s) throws StreamCorruptedException, IOException { super(s); } @Override public Object readUnshared() throws IOException, ClassNotFoundException { return super.readUnshared(); } } long id = new java.util.Date().getTime(); String filename = "SecurityPermissionsTest_" + id; File f = File.createTempFile(filename, null); ObjectOutputStream oos = new ObjectOutputStream(new FileOutputStream(f)); oos.writeObject(new Node()); oos.flush(); oos.close(); f.deleteOnExit(); TestSecurityManager s = new TestSecurityManager(); System.setSecurityManager(s); s.reset(); new ObjectInputStream(new FileInputStream(f)); assertTrue("ObjectInputStream(InputStream) ctor must not call checkPermission on security manager on a class which neither overwrites methods readFields nor readUnshared", !s.called); s.reset(); new TestObjectInputStream(new FileInputStream(f)); assertTrue("ObjectInputStream(InputStream) ctor must not call checkPermission on security manager on a class which neither overwrites methods readFields nor readUnshared", !s.called); s.reset(); new TestObjectInputStream_readFields(new FileInputStream(f)); assertTrue("ObjectInputStream(InputStream) ctor must call checkPermission on security manager on a class which overwrites method readFields", s.called); assertEquals("Name of SerializablePermission is not correct", "enableSubclassImplementation", s.permission.getName()); s.reset(); new TestObjectInputStream_readUnshared(new FileInputStream(f)); assertTrue("ObjectInputStream(InputStream) ctor must call checkPermission on security manager on a class which overwrites method readUnshared", s.called); assertEquals("Name of SerializablePermission is not correct", "enableSubclassImplementation", s.permission.getName()); } | public void testRenderRules() { try { MappingManager manager = new MappingManager(); OWLOntologyManager omanager = OWLManager.createOWLOntologyManager(); OWLOntology srcOntology; OWLOntology targetOntology; manager.loadMapping(rulesDoc.toURL()); srcOntology = omanager.loadOntologyFromPhysicalURI(srcURI); targetOntology = omanager.loadOntologyFromPhysicalURI(targetURI); manager.setSourceOntology(srcOntology); manager.setTargetOntology(targetOntology); Graph srcGraph = manager.getSourceGraph(); Graph targetGraph = manager.getTargetGraph(); System.out.println("Starting to render..."); FlexGraphViewFactory factory = new FlexGraphViewFactory(); factory.setColorScheme(ColorSchemes.BLUES); factory.visit(srcGraph); GraphView view = factory.getGraphView(); GraphViewRenderer renderer = new FlexGraphViewRenderer(); renderer.setGraphView(view); System.out.println("View updated with graph..."); InputStream xmlStream = renderer.renderGraphView(); StringWriter writer = new StringWriter(); IOUtils.copy(xmlStream, writer); System.out.println("Finished writing"); writer.close(); System.out.println("Finished render... XML is:"); System.out.println(writer.toString()); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (OWLOntologyCreationException e) { e.printStackTrace(); } } | 886,574 |
0 | public static String doPostEntity(String URL, List<NameValuePair> params) { try { OauthUtil util = new OauthUtil(); URI uri = new URI(URL); HttpClient httpclient = util.getNewHttpClient(); HttpPost postMethod = new HttpPost(uri); postMethod.setEntity(new UrlEncodedFormEntity(params, HTTP.UTF_8)); HttpResponse httpResponse = httpclient.execute(postMethod); if (httpResponse.getStatusLine().getStatusCode() == 200) { String strResult = EntityUtils.toString(httpResponse.getEntity()); Log.i("DEBUG", "result: " + strResult); String token; try { JSONObject obj = new JSONObject(strResult); token = obj.getString("access_token"); } catch (Exception e) { token = strResult.substring(strResult.indexOf("access_token=") + 13); } return token; } } catch (Exception e) { Log.i("DEBUG", e.toString()); } return null; } | public static byte[] decrypt(String passphrase, byte[] data) throws Exception { byte[] dataTemp; try { Security.addProvider(new com.sun.crypto.provider.SunJCE()); MessageDigest md = MessageDigest.getInstance("MD5"); md.update(passphrase.getBytes()); DESKeySpec key = new DESKeySpec(md.digest()); SecretKeySpec DESKey = new SecretKeySpec(key.getKey(), "DES"); Cipher cipher = Cipher.getInstance("DES/ECB/PKCS5Padding"); cipher.init(Cipher.DECRYPT_MODE, DESKey); dataTemp = cipher.doFinal(data); } catch (Exception e) { throw e; } return dataTemp; } | 886,575 |
0 | @ActionMethod public void mirror() throws IOException { final URL url = new URL("http://127.0.0.1:" + testPort + "/mirror"); final HttpURLConnection con = (HttpURLConnection) url.openConnection(); con.setRequestProperty(Http11Header.AUTHORIZATION, "Basic QWxhZGRpbjpvcGVuIHNlc2FtZQ=="); con.setRequestProperty(Http11Header.WWW_AUTHENTICATE, "Basic realm=\"karatasi\""); final InputStream in = con.getInputStream(); final byte[] buf = new byte[4096]; textArea.setText(""); for (int bytesRead; (bytesRead = in.read(buf)) != -1; ) { textArea.append(new String(buf, 0, bytesRead)); } } | public void testAuthentication() throws Exception { String host = "localhost"; int port = DEFAULT_PORT; URL url = new URL("http://" + host + ":" + port + "/"); URLConnection connection = url.openConnection(); InputStream in = connection.getInputStream(); in.close(); waitToStop(); server.setAttribute(name, new Attribute("AuthenticationMethod", "basic")); server.invoke(name, "addAuthorization", new Object[] { "mx4j", "mx4j" }, new String[] { "java.lang.String", "java.lang.String" }); server.invoke(name, "start", null, null); url = new URL("http://" + host + ":" + port + "/"); connection = url.openConnection(); try { in = connection.getInputStream(); } catch (Exception e) { } finally { in.close(); } assertEquals(((HttpURLConnection) connection).getResponseCode(), 401); url = new URL("http://" + host + ":" + port + "/"); connection = url.openConnection(); connection.setRequestProperty("Authorization", "basic bXg0ajpteDRq"); in = connection.getInputStream(); in.close(); waitToStop(); server.setAttribute(name, new Attribute("AuthenticationMethod", "none")); } | 886,576 |
1 | public static void copyFile(String oldPathFile, String newPathFile) { try { int bytesum = 0; int byteread = 0; File oldfile = new File(oldPathFile); if (oldfile.exists()) { InputStream inStream = new FileInputStream(oldPathFile); FileOutputStream fs = new FileOutputStream(newPathFile); byte[] buffer = new byte[2048]; while ((byteread = inStream.read(buffer)) != -1) { bytesum += byteread; fs.write(buffer, 0, byteread); } inStream.close(); } else { System.err.println(FileUtil.class.toString() + ":不存在file" + oldPathFile); } } catch (Exception e) { System.err.println(FileUtil.class.toString() + ":复制file" + oldPathFile + "到" + newPathFile + "出错!"); } } | public static void main(String argv[]) { Matrix A, B, C, Z, O, I, R, S, X, SUB, M, T, SQ, DEF, SOL; int errorCount = 0; int warningCount = 0; double tmp, s; double[] columnwise = { 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12. }; double[] rowwise = { 1., 4., 7., 10., 2., 5., 8., 11., 3., 6., 9., 12. }; double[][] avals = { { 1., 4., 7., 10. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } }; double[][] rankdef = avals; double[][] tvals = { { 1., 2., 3. }, { 4., 5., 6. }, { 7., 8., 9. }, { 10., 11., 12. } }; double[][] subavals = { { 5., 8., 11. }, { 6., 9., 12. } }; double[][] rvals = { { 1., 4., 7. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } }; double[][] pvals = { { 1., 1., 1. }, { 1., 2., 3. }, { 1., 3., 6. } }; double[][] ivals = { { 1., 0., 0., 0. }, { 0., 1., 0., 0. }, { 0., 0., 1., 0. } }; double[][] evals = { { 0., 1., 0., 0. }, { 1., 0., 2.e-7, 0. }, { 0., -2.e-7, 0., 1. }, { 0., 0., 1., 0. } }; double[][] square = { { 166., 188., 210. }, { 188., 214., 240. }, { 210., 240., 270. } }; double[][] sqSolution = { { 13. }, { 15. } }; double[][] condmat = { { 1., 3. }, { 7., 9. } }; int rows = 3, cols = 4; int invalidld = 5; int raggedr = 0; int raggedc = 4; int validld = 3; int nonconformld = 4; int ib = 1, ie = 2, jb = 1, je = 3; int[] rowindexset = { 1, 2 }; int[] badrowindexset = { 1, 3 }; int[] columnindexset = { 1, 2, 3 }; int[] badcolumnindexset = { 1, 2, 4 }; double columnsummax = 33.; double rowsummax = 30.; double sumofdiagonals = 15; double sumofsquares = 650; print("\nTesting constructors and constructor-like methods...\n"); try { A = new Matrix(columnwise, invalidld); errorCount = try_failure(errorCount, "Catch invalid length in packed constructor... ", "exception not thrown for invalid input"); } catch (IllegalArgumentException e) { try_success("Catch invalid length in packed constructor... ", e.getMessage()); } try { A = new Matrix(rvals); tmp = A.get(raggedr, raggedc); } catch (IllegalArgumentException e) { try_success("Catch ragged input to default constructor... ", e.getMessage()); } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "Catch ragged input to constructor... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later"); } try { A = Matrix.constructWithCopy(rvals); tmp = A.get(raggedr, raggedc); } catch (IllegalArgumentException e) { try_success("Catch ragged input to constructWithCopy... ", e.getMessage()); } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "Catch ragged input to constructWithCopy... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later"); } A = new Matrix(columnwise, validld); B = new Matrix(avals); tmp = B.get(0, 0); avals[0][0] = 0.0; C = B.minus(A); avals[0][0] = tmp; B = Matrix.constructWithCopy(avals); tmp = B.get(0, 0); avals[0][0] = 0.0; if ((tmp - B.get(0, 0)) != 0.0) { errorCount = try_failure(errorCount, "constructWithCopy... ", "copy not effected... data visible outside"); } else { try_success("constructWithCopy... ", ""); } avals[0][0] = columnwise[0]; I = new Matrix(ivals); try { check(I, Matrix.identity(3, 4)); try_success("identity... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "identity... ", "identity Matrix not successfully created"); } print("\nTesting access methods...\n"); B = new Matrix(avals); if (B.getRowDimension() != rows) { errorCount = try_failure(errorCount, "getRowDimension... ", ""); } else { try_success("getRowDimension... ", ""); } if (B.getColumnDimension() != cols) { errorCount = try_failure(errorCount, "getColumnDimension... ", ""); } else { try_success("getColumnDimension... ", ""); } B = new Matrix(avals); double[][] barray = B.getArray(); if (barray != avals) { errorCount = try_failure(errorCount, "getArray... ", ""); } else { try_success("getArray... ", ""); } barray = B.getArrayCopy(); if (barray == avals) { errorCount = try_failure(errorCount, "getArrayCopy... ", "data not (deep) copied"); } try { check(barray, avals); try_success("getArrayCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getArrayCopy... ", "data not successfully (deep) copied"); } double[] bpacked = B.getColumnPackedCopy(); try { check(bpacked, columnwise); try_success("getColumnPackedCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getColumnPackedCopy... ", "data not successfully (deep) copied by columns"); } bpacked = B.getRowPackedCopy(); try { check(bpacked, rowwise); try_success("getRowPackedCopy... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getRowPackedCopy... ", "data not successfully (deep) copied by rows"); } try { tmp = B.get(B.getRowDimension(), B.getColumnDimension() - 1); errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { tmp = B.get(B.getRowDimension() - 1, B.getColumnDimension()); errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("get(int,int)... OutofBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown"); } try { if (B.get(B.getRowDimension() - 1, B.getColumnDimension() - 1) != avals[B.getRowDimension() - 1][B.getColumnDimension() - 1]) { errorCount = try_failure(errorCount, "get(int,int)... ", "Matrix entry (i,j) not successfully retreived"); } else { try_success("get(int,int)... ", ""); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "get(int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } SUB = new Matrix(subavals); try { M = B.getMatrix(ib, ie + B.getRowDimension() + 1, jb, je); errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(ib, ie, jb, je + B.getColumnDimension() + 1); errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int,int,int,int)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(ib, ie, jb, je); try { check(SUB, M); try_success("getMatrix(int,int,int,int)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(ib, ie, badcolumnindexset); errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(ib, ie + B.getRowDimension() + 1, columnindexset); errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int,int,int[])... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(ib, ie, columnindexset); try { check(SUB, M); try_success("getMatrix(int,int,int[])... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(badrowindexset, jb, je); errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(rowindexset, jb, je + B.getColumnDimension() + 1); errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int[],int,int)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(rowindexset, jb, je); try { check(SUB, M); try_success("getMatrix(int[],int,int)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { M = B.getMatrix(badrowindexset, columnindexset); errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { M = B.getMatrix(rowindexset, badcolumnindexset); errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("getMatrix(int[],int[])... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { M = B.getMatrix(rowindexset, columnindexset); try { check(SUB, M); try_success("getMatrix(int[],int[])... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "submatrix not successfully retreived"); } } catch (java.lang.ArrayIndexOutOfBoundsException e) { errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.set(B.getRowDimension(), B.getColumnDimension() - 1, 0.); errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.set(B.getRowDimension() - 1, B.getColumnDimension(), 0.); errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("set(int,int,double)... OutofBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown"); } try { B.set(ib, jb, 0.); tmp = B.get(ib, jb); try { check(tmp, 0.); try_success("set(int,int,double)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "Matrix element not successfully set"); } } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "set(int,int,double)... ", "Unexpected ArrayIndexOutOfBoundsException"); } M = new Matrix(2, 3, 0.); try { B.setMatrix(ib, ie + B.getRowDimension() + 1, jb, je, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(ib, ie, jb, je + B.getColumnDimension() + 1, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int,int,int,int,Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(ib, ie, jb, je, M); try { check(M.minus(B.getMatrix(ib, ie, jb, je)), M); try_success("setMatrix(int,int,int,int,Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(ib, ie + B.getRowDimension() + 1, columnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(ib, ie, badcolumnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int,int,int[],Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(ib, ie, columnindexset, M); try { check(M.minus(B.getMatrix(ib, ie, columnindexset)), M); try_success("setMatrix(int,int,int[],Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(rowindexset, jb, je + B.getColumnDimension() + 1, M); errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(badrowindexset, jb, je, M); errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int[],int,int,Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(rowindexset, jb, je, M); try { check(M.minus(B.getMatrix(rowindexset, jb, je)), M); try_success("setMatrix(int[],int,int,Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "submatrix not successfully set"); } B.setMatrix(ib, ie, jb, je, SUB); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } try { B.setMatrix(rowindexset, badcolumnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e) { try { B.setMatrix(badrowindexset, columnindexset, M); errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } catch (java.lang.ArrayIndexOutOfBoundsException e1) { try_success("setMatrix(int[],int[],Matrix)... ArrayIndexOutOfBoundsException... ", ""); } } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown"); } try { B.setMatrix(rowindexset, columnindexset, M); try { check(M.minus(B.getMatrix(rowindexset, columnindexset)), M); try_success("setMatrix(int[],int[],Matrix)... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "submatrix not successfully set"); } } catch (java.lang.ArrayIndexOutOfBoundsException e1) { errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException"); } print("\nTesting array-like methods...\n"); S = new Matrix(columnwise, nonconformld); R = Matrix.random(A.getRowDimension(), A.getColumnDimension()); A = R; try { S = A.minus(S); errorCount = try_failure(errorCount, "minus conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("minus conformance check... ", ""); } if (A.minus(R).norm1() != 0.) { errorCount = try_failure(errorCount, "minus... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)"); } else { try_success("minus... ", ""); } A = R.copy(); A.minusEquals(R); Z = new Matrix(A.getRowDimension(), A.getColumnDimension()); try { A.minusEquals(S); errorCount = try_failure(errorCount, "minusEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("minusEquals conformance check... ", ""); } if (A.minus(Z).norm1() != 0.) { errorCount = try_failure(errorCount, "minusEquals... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)"); } else { try_success("minusEquals... ", ""); } A = R.copy(); B = Matrix.random(A.getRowDimension(), A.getColumnDimension()); C = A.minus(B); try { S = A.plus(S); errorCount = try_failure(errorCount, "plus conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("plus conformance check... ", ""); } try { check(C.plus(B), A); try_success("plus... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "plus... ", "(C = A - B, but C + B != A)"); } C = A.minus(B); C.plusEquals(B); try { A.plusEquals(S); errorCount = try_failure(errorCount, "plusEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("plusEquals conformance check... ", ""); } try { check(C, A); try_success("plusEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "plusEquals... ", "(C = A - B, but C = C + B != A)"); } A = R.uminus(); try { check(A.plus(R), Z); try_success("uminus... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "uminus... ", "(-A + A != zeros)"); } A = R.copy(); O = new Matrix(A.getRowDimension(), A.getColumnDimension(), 1.0); C = A.arrayLeftDivide(R); try { S = A.arrayLeftDivide(S); errorCount = try_failure(errorCount, "arrayLeftDivide conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayLeftDivide conformance check... ", ""); } try { check(C, O); try_success("arrayLeftDivide... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayLeftDivide... ", "(M.\\M != ones)"); } try { A.arrayLeftDivideEquals(S); errorCount = try_failure(errorCount, "arrayLeftDivideEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayLeftDivideEquals conformance check... ", ""); } A.arrayLeftDivideEquals(R); try { check(A, O); try_success("arrayLeftDivideEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayLeftDivideEquals... ", "(M.\\M != ones)"); } A = R.copy(); try { A.arrayRightDivide(S); errorCount = try_failure(errorCount, "arrayRightDivide conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayRightDivide conformance check... ", ""); } C = A.arrayRightDivide(R); try { check(C, O); try_success("arrayRightDivide... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayRightDivide... ", "(M./M != ones)"); } try { A.arrayRightDivideEquals(S); errorCount = try_failure(errorCount, "arrayRightDivideEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayRightDivideEquals conformance check... ", ""); } A.arrayRightDivideEquals(R); try { check(A, O); try_success("arrayRightDivideEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayRightDivideEquals... ", "(M./M != ones)"); } A = R.copy(); B = Matrix.random(A.getRowDimension(), A.getColumnDimension()); try { S = A.arrayTimes(S); errorCount = try_failure(errorCount, "arrayTimes conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayTimes conformance check... ", ""); } C = A.arrayTimes(B); try { check(C.arrayRightDivideEquals(B), A); try_success("arrayTimes... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayTimes... ", "(A = R, C = A.*B, but C./B != A)"); } try { A.arrayTimesEquals(S); errorCount = try_failure(errorCount, "arrayTimesEquals conformance check... ", "nonconformance not raised"); } catch (IllegalArgumentException e) { try_success("arrayTimesEquals conformance check... ", ""); } A.arrayTimesEquals(B); try { check(A.arrayRightDivideEquals(B), R); try_success("arrayTimesEquals... ", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "arrayTimesEquals... ", "(A = R, A = A.*B, but A./B != R)"); } print("\nTesting I/O methods...\n"); try { DecimalFormat fmt = new DecimalFormat("0.0000E00"); fmt.setDecimalFormatSymbols(new DecimalFormatSymbols(Locale.US)); PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out")); A.print(FILE, fmt, 10); FILE.close(); R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out"))); if (A.minus(R).norm1() < .001) { try_success("print()/read()...", ""); } else { errorCount = try_failure(errorCount, "print()/read()...", "Matrix read from file does not match Matrix printed to file"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry"); } catch (Exception e) { try { e.printStackTrace(System.out); warningCount = try_warning(warningCount, "print()/read()...", "Formatting error... will try JDK1.1 reformulation..."); DecimalFormat fmt = new DecimalFormat("0.0000"); PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out")); A.print(FILE, fmt, 10); FILE.close(); R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out"))); if (A.minus(R).norm1() < .001) { try_success("print()/read()...", ""); } else { errorCount = try_failure(errorCount, "print()/read() (2nd attempt) ...", "Matrix read from file does not match Matrix printed to file"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry"); } } R = Matrix.random(A.getRowDimension(), A.getColumnDimension()); String tmpname = "TMPMATRIX.serial"; try { ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(tmpname)); out.writeObject(R); ObjectInputStream sin = new ObjectInputStream(new FileInputStream(tmpname)); A = (Matrix) sin.readObject(); try { check(A, R); try_success("writeObject(Matrix)/readObject(Matrix)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "Matrix not serialized correctly"); } } catch (java.io.IOException ioe) { warningCount = try_warning(warningCount, "writeObject()/readObject()...", "unexpected I/O error, unable to run serialization test; check write permission in current directory and retry"); } catch (Exception e) { errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "unexpected error in serialization test"); } print("\nTesting linear algebra methods...\n"); A = new Matrix(columnwise, 3); T = new Matrix(tvals); T = A.transpose(); try { check(A.transpose(), T); try_success("transpose...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "transpose()...", "transpose unsuccessful"); } A.transpose(); try { check(A.norm1(), columnsummax); try_success("norm1...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "norm1()...", "incorrect norm calculation"); } try { check(A.normInf(), rowsummax); try_success("normInf()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "normInf()...", "incorrect norm calculation"); } try { check(A.normF(), Math.sqrt(sumofsquares)); try_success("normF...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "normF()...", "incorrect norm calculation"); } try { check(A.trace(), sumofdiagonals); try_success("trace()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "trace()...", "incorrect trace calculation"); } try { check(A.getMatrix(0, A.getRowDimension() - 1, 0, A.getRowDimension() - 1).det(), 0.); try_success("det()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "det()...", "incorrect determinant calculation"); } SQ = new Matrix(square); try { check(A.times(A.transpose()), SQ); try_success("times(Matrix)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "times(Matrix)...", "incorrect Matrix-Matrix product calculation"); } try { check(A.times(0.), Z); try_success("times(double)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "times(double)...", "incorrect Matrix-scalar product calculation"); } A = new Matrix(columnwise, 4); QRDecomposition QR = A.qr(); R = QR.getR(); try { check(A, QR.getQ().times(R)); try_success("QRDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "QRDecomposition...", "incorrect QR decomposition calculation"); } SingularValueDecomposition SVD = A.svd(); try { check(A, SVD.getU().times(SVD.getS().times(SVD.getV().transpose()))); try_success("SingularValueDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "SingularValueDecomposition...", "incorrect singular value decomposition calculation"); } DEF = new Matrix(rankdef); try { check(DEF.rank(), Math.min(DEF.getRowDimension(), DEF.getColumnDimension()) - 1); try_success("rank()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "rank()...", "incorrect rank calculation"); } B = new Matrix(condmat); SVD = B.svd(); double[] singularvalues = SVD.getSingularValues(); try { check(B.cond(), singularvalues[0] / singularvalues[Math.min(B.getRowDimension(), B.getColumnDimension()) - 1]); try_success("cond()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "cond()...", "incorrect condition number calculation"); } int n = A.getColumnDimension(); A = A.getMatrix(0, n - 1, 0, n - 1); A.set(0, 0, 0.); LUDecomposition LU = A.lu(); try { check(A.getMatrix(LU.getPivot(), 0, n - 1), LU.getL().times(LU.getU())); try_success("LUDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "LUDecomposition...", "incorrect LU decomposition calculation"); } X = A.inverse(); try { check(A.times(X), Matrix.identity(3, 3)); try_success("inverse()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "inverse()...", "incorrect inverse calculation"); } O = new Matrix(SUB.getRowDimension(), 1, 1.0); SOL = new Matrix(sqSolution); SQ = SUB.getMatrix(0, SUB.getRowDimension() - 1, 0, SUB.getRowDimension() - 1); try { check(SQ.solve(SOL), O); try_success("solve()...", ""); } catch (java.lang.IllegalArgumentException e1) { errorCount = try_failure(errorCount, "solve()...", e1.getMessage()); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "solve()...", e.getMessage()); } A = new Matrix(pvals); CholeskyDecomposition Chol = A.chol(); Matrix L = Chol.getL(); try { check(A, L.times(L.transpose())); try_success("CholeskyDecomposition...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "CholeskyDecomposition...", "incorrect Cholesky decomposition calculation"); } X = Chol.solve(Matrix.identity(3, 3)); try { check(A.times(X), Matrix.identity(3, 3)); try_success("CholeskyDecomposition solve()...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "CholeskyDecomposition solve()...", "incorrect Choleskydecomposition solve calculation"); } EigenvalueDecomposition Eig = A.eig(); Matrix D = Eig.getD(); Matrix V = Eig.getV(); try { check(A.times(V), V.times(D)); try_success("EigenvalueDecomposition (symmetric)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "EigenvalueDecomposition (symmetric)...", "incorrect symmetric Eigenvalue decomposition calculation"); } A = new Matrix(evals); Eig = A.eig(); D = Eig.getD(); V = Eig.getV(); try { check(A.times(V), V.times(D)); try_success("EigenvalueDecomposition (nonsymmetric)...", ""); } catch (java.lang.RuntimeException e) { errorCount = try_failure(errorCount, "EigenvalueDecomposition (nonsymmetric)...", "incorrect nonsymmetric Eigenvalue decomposition calculation"); } print("\nTestMatrix completed.\n"); print("Total errors reported: " + Integer.toString(errorCount) + "\n"); print("Total warnings reported: " + Integer.toString(warningCount) + "\n"); } | 886,577 |
0 | private String digestPassword(String password) { StringBuffer hexString = new StringBuffer(); try { MessageDigest algorithm = MessageDigest.getInstance("MD5"); algorithm.reset(); algorithm.update(password.getBytes()); byte[] messageDigest = algorithm.digest(); for (byte b : messageDigest) { hexString.append(Integer.toHexString(0xFF & b)); } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return hexString.toString(); } | public static void main(String[] args) throws IOException { long start = System.currentTimeMillis(); FileResourceManager frm = CommonsTransactionContext.configure(new File("C:/tmp")); try { frm.start(); } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } FileInputStream is = new FileInputStream("C:/Alfresco/WCM_Eval_Guide2.0.pdf"); CommonsTransactionOutputStream os = new CommonsTransactionOutputStream(new Ownerr()); IOUtils.copy(is, os); IOUtils.closeQuietly(is); IOUtils.closeQuietly(os); try { frm.stop(FileResourceManager.SHUTDOWN_MODE_NORMAL); } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } System.out.println(System.currentTimeMillis() - start); } | 886,578 |
0 | private void appendArchive(File instClass) throws IOException { FileOutputStream out = new FileOutputStream(instClass.getName(), true); FileInputStream zipStream = new FileInputStream("install.jar"); byte[] buf = new byte[2048]; int read = zipStream.read(buf); while (read > 0) { out.write(buf, 0, read); read = zipStream.read(buf); } zipStream.close(); out.close(); } | private static InputSource getInputSourceFromURI(String uri, String username, String password) throws IOException, ProtocolException, UnsupportedEncodingException { URL wsdlurl = null; try { wsdlurl = new URL(uri); } catch (MalformedURLException e) { return new InputSource(uri); } if (username == null && wsdlurl.getUserInfo() == null) { return new InputSource(uri); } if (!wsdlurl.getProtocol().startsWith("http")) { return new InputSource(uri); } URLConnection connection = wsdlurl.openConnection(); if (!(connection instanceof HttpURLConnection)) { return new InputSource(uri); } HttpURLConnection uconn = (HttpURLConnection) connection; String userinfo = wsdlurl.getUserInfo(); uconn.setRequestMethod("GET"); uconn.setAllowUserInteraction(false); uconn.setDefaultUseCaches(false); uconn.setDoInput(true); uconn.setDoOutput(false); uconn.setInstanceFollowRedirects(true); uconn.setUseCaches(false); String auth = null; if (userinfo != null) { auth = userinfo; } else if (username != null) { auth = (password == null) ? username : username + ":" + password; } if (auth != null) { uconn.setRequestProperty("Authorization", "Basic " + base64encode(auth.getBytes(httpAuthCharEncoding))); } uconn.connect(); return new InputSource(uconn.getInputStream()); } | 886,579 |
1 | public void render(Map map, HttpServletRequest httpServletRequest, HttpServletResponse httpServletResponse) throws Exception { ByteArrayOutputStream baos = new ByteArrayOutputStream(OUTPUT_BYTE_ARRAY_INITIAL_SIZE); File file = (File) map.get("targetFile"); IOUtils.copy(new FileInputStream(file), baos); httpServletResponse.setContentType(getContentType()); httpServletResponse.setContentLength(baos.size()); httpServletResponse.addHeader("Content-disposition", "attachment; filename=" + file.getName()); ServletOutputStream out = httpServletResponse.getOutputStream(); baos.writeTo(out); out.flush(); } | public static List<String> unZip(File tarFile, File directory) throws IOException { List<String> result = new ArrayList<String>(); InputStream inputStream = new FileInputStream(tarFile); ZipArchiveInputStream in = new ZipArchiveInputStream(inputStream); ZipArchiveEntry entry = in.getNextZipEntry(); while (entry != null) { OutputStream out = new FileOutputStream(new File(directory, entry.getName())); IOUtils.copy(in, out); out.close(); result.add(entry.getName()); entry = in.getNextZipEntry(); } in.close(); return result; } | 886,580 |
1 | public static void copy(String sourceFile, String targetFile) throws IOException { FileChannel sourceChannel = new FileInputStream(sourceFile).getChannel(); FileChannel targetChannel = new FileOutputStream(targetFile).getChannel(); targetChannel.transferFrom(sourceChannel, 0, sourceChannel.size()); sourceChannel.close(); targetChannel.close(); } | public static String[] putFECSplitFile(String uri, File file, int htl, boolean mode) { FcpFECUtils fecutils = null; Vector segmentHeaders = null; Vector segmentFileMaps = new Vector(); Vector checkFileMaps = new Vector(); Vector segmentKeyMaps = new Vector(); Vector checkKeyMaps = new Vector(); int fileLength = (int) file.length(); String output = new String(); int maxThreads = frame1.frostSettings.getIntValue("splitfileUploadThreads"); Thread[] chunkThreads = null; String[][] chunkResults = null; Thread[] checkThreads = null; String[][] checkResults = null; int threadCount = 0; String board = getBoard(file); { fecutils = new FcpFECUtils(frame1.frostSettings.getValue("nodeAddress"), frame1.frostSettings.getIntValue("nodePort")); synchronized (fecutils.getClass()) { try { segmentHeaders = fecutils.FECSegmentFile("OnionFEC_a_1_2", fileLength); } catch (Exception e) { } } int chunkCnt = 0; int checkCnt = 0; synchronized (fecutils.getClass()) { try { Socket fcpSock; BufferedInputStream fcpIn; PrintStream fcpOut; for (int i = 0; i < segmentHeaders.size(); i++) { int blockCount = (int) ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).BlockCount; int blockNo = 0; fcpSock = new Socket(InetAddress.getByName(frame1.frostSettings.getValue("nodeAddress")), frame1.frostSettings.getIntValue("nodePort")); fcpSock.setSoTimeout(1800000); fcpOut = new PrintStream(fcpSock.getOutputStream()); fcpIn = new BufferedInputStream(fcpSock.getInputStream()); FileInputStream fileIn = new FileInputStream(file); File[] chunkFiles = new File[blockCount]; { System.out.println("Processing segment " + i); fileIn.skip(((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).Offset); long segLength = ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).BlockCount * ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).BlockSize; System.out.println("segLength = " + Long.toHexString(segLength)); String headerString = "SegmentHeader\n" + ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).reconstruct() + "EndMessage\n"; String dataHeaderString = "\0\0\0\2FECEncodeSegment\nMetadataLength=" + Long.toHexString(headerString.length()) + "\nDataLength=" + Long.toHexString(headerString.length() + segLength) + "\nData\n" + headerString; System.out.print(dataHeaderString); fcpOut.print(dataHeaderString); long count = 0; while (count < segLength) { byte[] buffer = new byte[(int) ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).BlockSize]; System.out.println(Long.toHexString(((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).Offset + count)); int inbytes = fileIn.read(buffer); if (inbytes < 0) { System.out.println("End of input file - no data"); for (int j = 0; j < buffer.length; j++) buffer[j] = 0; inbytes = buffer.length; } if (inbytes < buffer.length) { System.out.println("End of input file - not enough data"); for (int j = inbytes; j < buffer.length; j++) buffer[j] = 0; inbytes = buffer.length; } if (inbytes > segLength - count) inbytes = (int) (segLength - count); fcpOut.write(buffer); File uploadMe = new File(frame1.keypool + String.valueOf(System.currentTimeMillis()) + "-" + chunkCnt + ".tmp"); chunkFiles[blockNo] = uploadMe; uploadMe.deleteOnExit(); FileOutputStream fileOut = new FileOutputStream(uploadMe); fileOut.write(buffer, 0, (int) inbytes); fileOut.close(); count += inbytes; chunkCnt++; ; blockNo++; if (blockNo >= blockCount) break; } segmentFileMaps.add(chunkFiles); fcpOut.flush(); fileIn.close(); } int checkNo = 0; int checkBlockCount = (int) ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).CheckBlockCount; File[] checkFiles = new File[checkBlockCount]; File uploadMe = null; FileOutputStream outFile = null; { String currentLine; long checkBlockSize = ((FcpFECUtilsSegmentHeader) segmentHeaders.get(i)).CheckBlockSize; int checkPtr = 0; int length = 0; do { boolean started = false; currentLine = fecutils.getLine(fcpIn).trim(); if (currentLine.equals("DataChunk")) { started = true; } if (currentLine.startsWith("Length=")) { length = Integer.parseInt((currentLine.split("="))[1], 16); } if (currentLine.equals("Data")) { int currentRead; byte[] buffer = new byte[(int) length]; if (uploadMe == null) { uploadMe = new File(frame1.keypool + String.valueOf(System.currentTimeMillis()) + "-chk-" + checkCnt + ".tmp"); uploadMe.deleteOnExit(); outFile = new FileOutputStream(uploadMe); } currentRead = fcpIn.read(buffer); while (currentRead < length) { currentRead += fcpIn.read(buffer, currentRead, length - currentRead); } outFile.write(buffer); checkPtr += currentRead; if (checkPtr == checkBlockSize) { outFile.close(); checkFiles[checkNo] = uploadMe; uploadMe = null; checkNo++; checkCnt++; checkPtr = 0; } } } while (currentLine.length() > 0); checkFileMaps.add(checkFiles); } fcpOut.close(); fcpIn.close(); fcpSock.close(); } } catch (Exception e) { System.out.println("putFECSplitFile NOT GOOD " + e.toString()); } } int chunkNo = 0; int uploadedBytes = 0; for (int i = 0; i < segmentFileMaps.size(); i++) { File[] currentFileMap = (File[]) segmentFileMaps.get(i); chunkThreads = new Thread[currentFileMap.length]; chunkResults = new String[currentFileMap.length][2]; threadCount = 0; for (int j = 0; j < currentFileMap.length; j++) { if (DEBUG) System.out.println("Chunk: " + chunkNo); while (getActiveThreads(chunkThreads) >= maxThreads) mixed.wait(5000); chunkThreads[threadCount] = new putKeyThread("CHK@", currentFileMap[j], htl, chunkResults, threadCount, mode); chunkThreads[threadCount].start(); threadCount++; uploadedBytes += currentFileMap[j].length(); updateUploadTable(file, uploadedBytes, mode); mixed.wait(1000); chunkNo++; } while (getActiveThreads(chunkThreads) > 0) { if (DEBUG) System.out.println("Active Splitfile inserts remaining: " + getActiveThreads(chunkThreads)); mixed.wait(3000); } segmentKeyMaps.add(chunkResults); } int checkNo = 0; for (int i = 0; i < checkFileMaps.size(); i++) { File[] currentFileMap = (File[]) checkFileMaps.get(i); checkThreads = new Thread[currentFileMap.length]; checkResults = new String[currentFileMap.length][2]; threadCount = 0; for (int j = 0; j < currentFileMap.length; j++) { if (DEBUG) System.out.println("Check: " + checkNo); while (getActiveThreads(checkThreads) >= maxThreads) mixed.wait(5000); checkThreads[threadCount] = new putKeyThread("CHK@", currentFileMap[j], htl, checkResults, threadCount, mode); checkThreads[threadCount].start(); threadCount++; uploadedBytes += currentFileMap[j].length(); updateUploadTable(file, uploadedBytes, mode); mixed.wait(1000); checkNo++; } while (getActiveThreads(checkThreads) > 0) { if (DEBUG) System.out.println("Active Checkblock inserts remaining: " + getActiveThreads(checkThreads)); mixed.wait(3000); } checkKeyMaps.add(checkResults); } checkThreads = null; } String redirect = null; { synchronized (fecutils.getClass()) { try { redirect = fecutils.FECMakeMetadata(segmentHeaders, segmentKeyMaps, checkKeyMaps, "Frost"); } catch (Exception e) { System.out.println("putFECSplitFile NOT GOOD " + e.toString()); } } String[] sortedRedirect = redirect.split("\n"); for (int z = 0; z < sortedRedirect.length; z++) System.out.println(sortedRedirect[z]); int sortStart = -1; int sortEnd = -1; for (int line = 0; line < sortedRedirect.length; line++) { if (sortedRedirect[line].equals("Document")) { sortStart = line + 1; break; } } for (int line = sortStart; line < sortedRedirect.length; line++) { if (sortedRedirect[line].equals("End")) { sortEnd = line; break; } } System.out.println("sortStart " + sortStart + " sortEnd " + sortEnd); if (sortStart < sortEnd) Arrays.sort(sortedRedirect, sortStart, sortEnd); redirect = new String(); for (int line = 0; line < sortedRedirect.length; line++) redirect += sortedRedirect[line] + "\n"; System.out.println(redirect); } int tries = 0; String[] result = { "Error", "Error" }; while (!result[0].equals("Success") && !result[0].equals("KeyCollision") && tries < 8) { tries++; try { FcpConnection connection = new FcpConnection(frame1.frostSettings.getValue("nodeAddress"), frame1.frostSettings.getValue("nodePort")); output = connection.putKeyFromFile(uri, null, redirect.getBytes(), htl, mode); } catch (FcpToolsException e) { if (DEBUG) System.out.println("FcpToolsException " + e); frame1.displayWarning(e.toString()); } catch (UnknownHostException e) { if (DEBUG) System.out.println("UnknownHostException"); frame1.displayWarning(e.toString()); } catch (IOException e) { if (DEBUG) System.out.println("IOException"); frame1.displayWarning(e.toString()); } result = result(output); mixed.wait(3000); if (DEBUG) System.out.println("*****" + result[0] + " " + result[1] + " "); } if ((result[0].equals("Success") || result[0].equals("KeyCollision")) && mode) { try { GregorianCalendar cal = new GregorianCalendar(); cal.setTimeZone(TimeZone.getTimeZone("GMT")); String dirdate = cal.get(Calendar.YEAR) + "."; dirdate += cal.get(Calendar.MONTH) + 1 + "."; dirdate += cal.get(Calendar.DATE); String fileSeparator = System.getProperty("file.separator"); String destination = frame1.keypool + board + fileSeparator + dirdate + fileSeparator; FcpConnection connection = new FcpConnection(frame1.frostSettings.getValue("nodeAddress"), frame1.frostSettings.getValue("nodePort")); String contentKey = result(connection.putKeyFromFile(uri, null, redirect.getBytes(), htl, false))[1]; String prefix = new String("freenet:"); if (contentKey.startsWith(prefix)) contentKey = contentKey.substring(prefix.length()); FileAccess.writeFile("Already uploaded today", destination + contentKey + ".lck"); } catch (Exception e) { } } return result; } | 886,581 |
1 | private void copy(File source, File dest) throws IOException { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { close(in); close(out); } } | private void writeGif(String filename, String outputFile) throws IOException { File file = new File(filename); InputStream in = new FileInputStream(file); FileOutputStream fout = new FileOutputStream(outputFile); int totalRead = 0; int readBytes = 0; int blockSize = 65000; long fileLen = file.length(); byte b[] = new byte[blockSize]; while ((long) totalRead < fileLen) { readBytes = in.read(b, 0, blockSize); totalRead += readBytes; fout.write(b, 0, readBytes); } in.close(); fout.close(); } | 886,582 |
0 | @Test public void testRegisterOwnJceProvider() throws Exception { MyTestProvider provider = new MyTestProvider(); assertTrue(-1 != Security.addProvider(provider)); MessageDigest messageDigest = MessageDigest.getInstance("SHA-1", MyTestProvider.NAME); assertEquals(MyTestProvider.NAME, messageDigest.getProvider().getName()); messageDigest.update("hello world".getBytes()); byte[] result = messageDigest.digest(); Assert.assertArrayEquals("hello world".getBytes(), result); Security.removeProvider(MyTestProvider.NAME); } | public static void copyFile(IPath fromFileName, IPath toFileName) throws IOException { File fromFile = fromFileName.toFile(); File toFile = toFileName.toFile(); if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } InputStream from = null; OutputStream to = null; try { from = new BufferedInputStream(new FileInputStream(fromFile)); to = new BufferedOutputStream(new FileOutputStream(toFile)); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); } finally { if (from != null) try { from.close(); } catch (IOException e) { } if (to != null) try { to.close(); } catch (IOException e) { } } } | 886,583 |
0 | public void read(final URL url) throws IOException, DataFormatException { final URLConnection connection = url.openConnection(); final int fileSize = connection.getContentLength(); if (fileSize < 0) { throw new FileNotFoundException(url.getFile()); } final String mimeType = connection.getContentType(); decoder = FontRegistry.getFontProvider(mimeType); if (decoder == null) { throw new DataFormatException("Unsupported format"); } decoder.read(url); } | public void copy(File s, File t) throws IOException { FileChannel in = (new FileInputStream(s)).getChannel(); FileChannel out = (new FileOutputStream(t)).getChannel(); in.transferTo(0, s.length(), out); in.close(); out.close(); } | 886,584 |
0 | public void deleteType(String id) throws Exception { String tmp = ""; PreparedStatement prepStmt = null; try { if (id == null || id.length() == 0) throw new Exception("Invalid parameter"); con = database.getConnection(); String delType = "delete from type where TYPE_ID='" + id + "'"; con.setAutoCommit(false); prepStmt = con.prepareStatement("delete from correlation where TYPE_ID='" + id + "' OR CORRELATEDTYPE_ID='" + id + "'"); prepStmt.executeUpdate(); prepStmt = con.prepareStatement("delete from composition where TYPE_ID='" + id + "'"); prepStmt.executeUpdate(); prepStmt = con.prepareStatement("delete from distribution where TYPE_ID='" + id + "'"); prepStmt.executeUpdate(); prepStmt = con.prepareStatement("delete from typename where TYPE_ID='" + id + "'"); prepStmt.executeUpdate(); prepStmt = con.prepareStatement("delete from typereference where TYPE_ID='" + id + "'"); prepStmt.executeUpdate(); prepStmt = con.prepareStatement("delete from plot where TYPE_ID='" + id + "'"); prepStmt.executeUpdate(); prepStmt = con.prepareStatement(delType); prepStmt.executeUpdate(); con.commit(); prepStmt.close(); con.close(); } catch (Exception e) { if (!con.isClosed()) { con.rollback(); prepStmt.close(); con.close(); } throw e; } } | protected void handleUrl(URL url) throws Exception { File file = new File(dir.getAbsolutePath() + "/" + new Date().getTime() + "." + this.ext); FileWriter writer = new FileWriter(file); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String s; while ((s = in.readLine()) != null) { writer.write(s + "\n"); } in.close(); writer.close(); } | 886,585 |
0 | private static synchronized boolean doCopyFile(File srcFile, File destFile, boolean preserveFileDate) throws IOException { if (destFile.exists() && destFile.isDirectory()) { destFile = new File(destFile + FILE_SEPARATOR + srcFile.getName()); } FileInputStream input = new FileInputStream(srcFile); try { FileOutputStream output = new FileOutputStream(destFile); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } if (srcFile.length() != destFile.length()) { throw new IOException("Failed to copy full contents from '" + srcFile + "' to '" + destFile + "'"); } if (preserveFileDate) { destFile.setLastModified(srcFile.lastModified()); } return destFile.exists(); } | public static void writeFromURL(String urlstr, String filename) throws Exception { URL url = new URL(urlstr); InputStream in = url.openStream(); BufferedReader bf = null; StringBuffer sb = new StringBuffer(); try { bf = new BufferedReader(new InputStreamReader(in, "latin1")); String s; while (true) { s = bf.readLine(); if (s != null) { sb.append(s); } else { break; } } } catch (Exception e) { throw e; } finally { bf.close(); } writeRawBytes(sb.toString(), filename); } | 886,586 |
0 | public boolean chequearMarca(int a, int m, int d) { boolean existe = false; try { cantidadArchivos = obtenerCantidad() + 1; String filenametxt = ""; String filenamezip = ""; int dia = 0; int mes = 0; int ano = 0; for (int i = 1; i < cantidadArchivos; i++) { filenamezip = "recordatorio" + i + ".zip"; filenametxt = "recordatorio" + i + ".txt"; BufferedOutputStream dest = null; BufferedInputStream is = null; ZipEntry entry; ZipFile zipfile = new ZipFile(filenamezip); Enumeration e = zipfile.entries(); while (e.hasMoreElements()) { entry = (ZipEntry) e.nextElement(); is = new BufferedInputStream(zipfile.getInputStream(entry)); int count; byte data[] = new byte[buffer]; FileOutputStream fos = new FileOutputStream(entry.getName()); dest = new BufferedOutputStream(fos, buffer); while ((count = is.read(data, 0, buffer)) != -1) dest.write(data, 0, count); dest.flush(); dest.close(); is.close(); } DataInputStream input = new DataInputStream(new FileInputStream(filenametxt)); dia = Integer.parseInt(input.readLine()); mes = Integer.parseInt(input.readLine()); ano = Integer.parseInt(input.readLine()); if (ano == a && mes == m && dia == d) existe = true; input.close(); } } catch (Exception e) { JOptionPane.showMessageDialog(null, "Error en: " + e.toString(), "Error", JOptionPane.ERROR_MESSAGE); } return (existe); } | public static ISimpleChemObjectReader createReader(URL url, String urlString, String type) throws CDKException { if (type == null) { type = "mol"; } ISimpleChemObjectReader cor = null; try { Reader input = new BufferedReader(getReader(url)); FormatFactory formatFactory = new FormatFactory(8192); IChemFormat format = formatFactory.guessFormat(input); if (format != null) { if (format instanceof RGroupQueryFormat) { cor = new RGroupQueryReader(); cor.setReader(input); } else if (format instanceof CMLFormat) { cor = new CMLReader(urlString); cor.setReader(url.openStream()); } else if (format instanceof MDLV2000Format) { cor = new MDLV2000Reader(getReader(url)); cor.setReader(input); } } } catch (Exception exc) { exc.printStackTrace(); } if (cor == null) { if (type.equals(JCPFileFilter.cml) || type.equals(JCPFileFilter.xml)) { cor = new CMLReader(urlString); } else if (type.equals(JCPFileFilter.sdf)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.mol)) { cor = new MDLV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.inchi)) { try { cor = new INChIReader(new URL(urlString).openStream()); } catch (Exception e) { e.printStackTrace(); } } else if (type.equals(JCPFileFilter.rxn)) { cor = new MDLRXNV2000Reader(getReader(url)); } else if (type.equals(JCPFileFilter.smi)) { cor = new SMILESReader(getReader(url)); } } if (cor == null) { throw new CDKException(GT._("Could not determine file format")); } if (cor instanceof MDLV2000Reader) { try { BufferedReader in = new BufferedReader(getReader(url)); String line; while ((line = in.readLine()) != null) { if (line.equals("$$$$")) { String message = GT._("It seems you opened a mol or sdf" + " file containing several molecules. " + "Only the first one will be shown"); JOptionPane.showMessageDialog(null, message, GT._("sdf-like file"), JOptionPane.INFORMATION_MESSAGE); break; } } } catch (IOException ex) { ex.printStackTrace(); } } return cor; } | 886,587 |
1 | public static void downloadFile(HttpServletResponse response, String file) throws IOException { response.setContentType(FileUtils.getContentType(file)); response.setContentLength(FileUtils.getContentLength(file)); response.setHeader("Content-type", ResponseUtils.DOWNLOAD_CONTENT_TYPE); response.setHeader("Content-Disposition", "attachment; filename=\"" + FileUtils.getFileName(file) + "\""); response.setHeader("Content-Length", Integer.toString(FileUtils.getContentLength(file))); InputStream input = new FileInputStream(file); OutputStream output = response.getOutputStream(); IOUtils.copy(input, output, true); } | static void cleanFile(File file) { final Counter cnt = new Counter(); final File out = new File(FileUtils.appendToFileName(file.getAbsolutePath(), ".cleaned")); final SAMFileReader reader = new SAMFileReader(file); final SAMRecordIterator it = reader.iterator(); final SAMFileWriter writer = new SAMFileWriterFactory().makeSAMOrBAMWriter(reader.getFileHeader(), true, out); if (!it.hasNext()) return; log.info("Cleaning file " + file + " to " + out.getName()); SAMRecord last = it.next(); writer.addAlignment(last); while (it.hasNext()) { final SAMRecord now = it.next(); final int start1 = last.getAlignmentStart(); final int start2 = now.getAlignmentStart(); final int end1 = last.getAlignmentEnd(); final int end2 = now.getAlignmentEnd(); if (start1 == start2 && end1 == end2) { log.debug("Discarding record " + now.toString()); cnt.count(); continue; } writer.addAlignment(now); last = now; } writer.close(); reader.close(); log.info(file + " done, discarded " + cnt.getCount() + " reads"); exe.shutdown(); } | 886,588 |
1 | @Test public void testFromFile() throws IOException { File temp = File.createTempFile("fannj_", ".tmp"); temp.deleteOnExit(); IOUtils.copy(this.getClass().getResourceAsStream("xor_float.net"), new FileOutputStream(temp)); Fann fann = new Fann(temp.getPath()); assertEquals(2, fann.getNumInputNeurons()); assertEquals(1, fann.getNumOutputNeurons()); assertEquals(-1f, fann.run(new float[] { -1, -1 })[0], .2f); assertEquals(1f, fann.run(new float[] { -1, 1 })[0], .2f); assertEquals(1f, fann.run(new float[] { 1, -1 })[0], .2f); assertEquals(-1f, fann.run(new float[] { 1, 1 })[0], .2f); fann.close(); } | public static void copyFile(String from, String to, boolean append) throws IOException { FileChannel in = new FileInputStream(from).getChannel(); FileChannel out = new FileOutputStream(to, append).getChannel(); ByteBuffer buffer = ByteBuffer.allocate(BSIZE); while (in.read(buffer) != -1) { buffer.flip(); out.write(buffer); buffer.clear(); } } | 886,589 |
0 | public static File getFileFromURL(URL url) { File tempFile; BufferedInputStream in = null; BufferedOutputStream out = null; try { String tempDir = System.getProperty("java.io.tmpdir", "."); tempFile = File.createTempFile("xxindex", ".tmp", new File(tempDir)); tempFile.deleteOnExit(); InputStream is = url.openStream(); in = new BufferedInputStream(is); FileOutputStream fos = new FileOutputStream(tempFile); out = new BufferedOutputStream(fos); byte[] b = new byte[1]; while (in.read(b) >= 0) { out.write(b); } logger.debug(url + " written to local file " + tempFile.getAbsolutePath()); } catch (IOException e) { throw new IllegalStateException("Could not create local file for URL: " + url, e); } finally { try { if (in != null) { in.close(); } if (out != null) { out.close(); } } catch (IOException e) { } } return tempFile; } | public void copy(File s, File t) throws IOException { FileChannel in = (new FileInputStream(s)).getChannel(); FileChannel out = (new FileOutputStream(t)).getChannel(); in.transferTo(0, s.length(), out); in.close(); out.close(); } | 886,590 |
0 | public HttpURLConnection openConnection(String url) throws IOException { if (isDebugMode()) System.out.println("open: " + url); URL u = new URL(url); HttpURLConnection urlConnection; if (proxy != null) urlConnection = (HttpURLConnection) u.openConnection(proxy); else urlConnection = (HttpURLConnection) u.openConnection(); urlConnection.setRequestProperty("User-Agent", userAgent); return urlConnection; } | public Vector decode(final URL url) throws IOException { LineNumberReader reader; if (owner != null) { reader = new LineNumberReader(new InputStreamReader(new ProgressMonitorInputStream(owner, "Loading " + url, url.openStream()))); } else { reader = new LineNumberReader(new InputStreamReader(url.openStream())); } Vector v = new Vector(); String line; Vector events; try { while ((line = reader.readLine()) != null) { StringBuffer buffer = new StringBuffer(line); for (int i = 0; i < 1000; i++) { buffer.append(reader.readLine()).append("\n"); } events = decodeEvents(buffer.toString()); if (events != null) { v.addAll(events); } } } finally { partialEvent = null; try { if (reader != null) { reader.close(); } } catch (Exception e) { e.printStackTrace(); } } return v; } | 886,591 |
1 | public static void copyURLToFile(URL source, File destination) throws IOException { if (destination.getParentFile() != null && !destination.getParentFile().exists()) { destination.getParentFile().mkdirs(); } if (destination.exists() && !destination.canWrite()) { String message = "Unable to open file " + destination + " for writing."; throw new IOException(message); } InputStream input = source.openStream(); try { FileOutputStream output = new FileOutputStream(destination); try { IOUtils.copy(input, output); } finally { IOUtils.closeQuietly(output); } } finally { IOUtils.closeQuietly(input); } } | @Override protected void doPost(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String uuid = req.getParameterValues(Constants.PARAM_UUID)[0]; String datastream = null; if (req.getRequestURI().contains(Constants.SERVLET_DOWNLOAD_FOXML_PREFIX)) { resp.addHeader("Content-Disposition", "attachment; ContentType = \"text/xml\"; filename=\"" + uuid + "_local_version.foxml\""); } else { datastream = req.getParameterValues(Constants.PARAM_DATASTREAM)[0]; resp.addHeader("Content-Disposition", "attachment; ContentType = \"text/xml\"; filename=\"" + uuid + "_local_version_" + datastream + ".xml\""); } String xmlContent = URLDecoder.decode(req.getParameterValues(Constants.PARAM_CONTENT)[0], "UTF-8"); InputStream is = new ByteArrayInputStream(xmlContent.getBytes("UTF-8")); ServletOutputStream os = resp.getOutputStream(); IOUtils.copyStreams(is, os); os.flush(); } | 886,592 |
0 | public static String getMD5Str(String str) { MessageDigest messageDigest = null; try { messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update(str.getBytes("UTF-8")); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); System.exit(-1); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } byte[] byteArray = messageDigest.digest(); StringBuffer md5StrBuff = new StringBuffer(); for (int i = 0; i < byteArray.length; i++) { if (Integer.toHexString(0xFF & byteArray[i]).length() == 1) md5StrBuff.append("0").append(Integer.toHexString(0xFF & byteArray[i])); else md5StrBuff.append(Integer.toHexString(0xFF & byteArray[i])); } return md5StrBuff.toString(); } | public alto.io.Output openOutput() throws java.io.IOException { URL url = this.url; if (null != url) { URLConnection connection = url.openConnection(); connection.setDoOutput(true); if (connection instanceof alto.net.Connection) { ((alto.net.Connection) connection).setReference(this); } return new ReferenceOutputStream(this, connection); } HttpMessage container = this.write(); return new ReferenceOutputStream(this, container); } | 886,593 |
0 | public void removerQuestaoMultiplaEscolha(QuestaoMultiplaEscolha multiplaEscolha) throws ClassNotFoundException, SQLException { this.criaConexao(false); String sql = "DELETE FROM \"Disciplina\" " + " WHERE ID_Disciplina = ? )"; PreparedStatement stmt = null; try { stmt = connection.prepareStatement(sql); stmt.executeUpdate(); connection.commit(); } catch (SQLException e) { connection.rollback(); throw e; } finally { try { stmt.close(); this.fechaConexao(); } catch (SQLException e) { throw e; } } } | public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } } | 886,594 |
1 | public static void zip() throws Exception { System.out.println("zip()"); ZipOutputStream zipout = new ZipOutputStream(new FileOutputStream(new File("/zip/myzip.zip"))); ZipEntry entry = new ZipEntry("asdf.script"); zipout.putNextEntry(entry); byte buffer[] = new byte[BLOCKSIZE]; FileInputStream in = new FileInputStream(new File("/zip/asdf.script")); for (int length; (length = in.read(buffer, 0, BLOCKSIZE)) != -1; ) zipout.write(buffer, 0, length); in.close(); zipout.closeEntry(); zipout.close(); } | public void salva(UploadedFile imagem, Usuario usuario) { File destino = new File(pastaImagens, usuario.getId() + ".imagem"); try { IOUtils.copyLarge(imagem.getFile(), new FileOutputStream(destino)); } catch (IOException e) { throw new RuntimeException("Erro ao copiar imagem", e); } } | 886,595 |
1 | public boolean import_status(String filename) { int pieceId; int i, j, col, row; int rotation; int number; boolean byurl = false; e2piece temppiece; String lineread; StringTokenizer tok; BufferedReader entree; try { if (byurl == true) { URL url = new URL(baseURL, filename); InputStream in = url.openStream(); entree = new BufferedReader(new InputStreamReader(in)); } else { entree = new BufferedReader(new FileReader(filename)); } pieceId = 0; for (i = 0; i < board.colnb; i++) { for (j = 0; j < board.rownb; j++) { unplace_piece_at(i, j); } } while (true) { lineread = entree.readLine(); if (lineread == null) { break; } tok = new StringTokenizer(lineread, " "); pieceId = Integer.parseInt(tok.nextToken()); col = Integer.parseInt(tok.nextToken()) - 1; row = Integer.parseInt(tok.nextToken()) - 1; rotation = Integer.parseInt(tok.nextToken()); place_piece_at(pieceId, col, row, 0); temppiece = board.get_piece_at(col, row); temppiece.reset_rotation(); temppiece.rotate(rotation); } return true; } catch (IOException err) { return false; } } | public String loadURLString(java.net.URL url) { try { BufferedReader br = new BufferedReader(new InputStreamReader(url.openStream())); StringBuffer buf = new StringBuffer(); String s = ""; while (br.ready() && s != null) { s = br.readLine(); if (s != null) { buf.append(s); buf.append("\n"); } } return buf.toString(); } catch (IOException ex) { return ""; } catch (NullPointerException npe) { return ""; } } | 886,596 |
1 | private static String getDocumentAt(String urlString) { StringBuffer html_text = new StringBuffer(); try { URL url = new URL(urlString); URLConnection conn = url.openConnection(); BufferedReader reader = new BufferedReader(new InputStreamReader(conn.getInputStream())); String line = null; while ((line = reader.readLine()) != null) html_text.append(line + "\n"); reader.close(); } catch (MalformedURLException e) { System.out.println("����URL: " + urlString); } catch (IOException e) { e.printStackTrace(); } return html_text.toString(); } | public static synchronized String getPageContent(String pageUrl) { URL url = null; InputStreamReader inputStreamReader = null; BufferedReader bufferedReader = null; String line = null; StringBuilder page = null; if (pageUrl == null || pageUrl.trim().length() == 0) { return null; } else { try { url = new URL(pageUrl); inputStreamReader = new InputStreamReader(url.openStream()); bufferedReader = new BufferedReader(inputStreamReader); page = new StringBuilder(); while ((line = bufferedReader.readLine()) != null) { page.append(line); page.append("\n"); } } catch (IOException e) { logger.error("IOException", e); } catch (Exception e) { logger.error("Exception", e); } finally { try { if (bufferedReader != null) { bufferedReader.close(); } if (inputStreamReader != null) { inputStreamReader.close(); } } catch (IOException e) { logger.error("IOException", e); } catch (Exception e) { logger.error("Exception", e); } } } if (page == null) { return null; } else { return page.toString(); } } | 886,597 |
1 | private void writeMessage(ChannelBuffer buffer, File dst) throws IOException { ChannelBufferInputStream is = new ChannelBufferInputStream(buffer); OutputStream os = null; try { os = new FileOutputStream(dst); IOUtils.copyLarge(is, os); } finally { IOUtils.closeQuietly(os); } } | public static void main(String[] args) throws Exception { String codecClassname = args[0]; Class<?> codecClass = Class.forName(codecClassname); Configuration conf = new Configuration(); CompressionCodec codec = (CompressionCodec) ReflectionUtils.newInstance(codecClass, conf); CompressionOutputStream out = codec.createOutputStream(System.out); IOUtils.copyBytes(System.in, out, 4096, false); out.finish(); } | 886,598 |
0 | private boolean importPKC(String keystoreLocation, String pw, String pkcFile, String alias) { boolean imported = false; KeyStore ks = null; try { ks = KeyStore.getInstance(KeyStore.getDefaultType()); ks.load(new BufferedInputStream(new FileInputStream(keystoreLocation)), pw.toCharArray()); } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading keystore file when exporting PKC: " + e.getMessage()); } return false; } Certificate cert = null; try { BufferedInputStream bis = new BufferedInputStream(new FileInputStream(pkcFile)); CertificateFactory cf = CertificateFactory.getInstance("X.509"); while (bis.available() > 0) { cert = cf.generateCertificate(bis); } } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading certificate from file when importing PKC: " + e.getMessage()); } return false; } BufferedOutputStream bos = null; try { bos = new BufferedOutputStream(new FileOutputStream(new File(keystoreLocation))); } catch (FileNotFoundException e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error accessing key store file when importing certificate: " + e.getMessage()); } return false; } try { if (alias.equals("rootca")) { ks.setCertificateEntry(alias, cert); } else { KeyStore.PrivateKeyEntry pkEntry = (KeyStore.PrivateKeyEntry) ks.getEntry(alias, new KeyStore.PasswordProtection(pw.toCharArray())); ks.setKeyEntry(alias, pkEntry.getPrivateKey(), pw.toCharArray(), new Certificate[] { cert }); } ks.store(bos, pw.toCharArray()); imported = true; } catch (Exception e) { e.printStackTrace(); if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error writing keystore to file when importing key store: " + e.getMessage()); } return false; } return imported; } | public String getMd5CodeOf16(String str) { StringBuffer buf = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte b[] = md.digest(); int i; buf = new StringBuffer(""); for (int offset = 0; offset < b.length; offset++) { i = b[offset]; if (i < 0) i += 256; if (i < 16) buf.append("0"); buf.append(Integer.toHexString(i)); } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } finally { return buf.toString().substring(8, 24); } } | 886,599 |
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