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__author__ = 'david' from typing import List, Iterable from multiprocessing import Pool import time def compute(a: float)->float: """ Here will just compute the result and return it """ a = a*2+1 a = 0.0+a-1 a = a/2 return a ** 2 + 1 + 0.6 ** a def f1(): """ first try is to run a ...
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class dstat_plugin(dstat): """ Read and Write average wait times of block devices. Displays the average read and write wait times of block devices """ def __init__(self): self.nick = ('rawait', 'wawait') self.type = 'f' self.width = 4 self.scale = 1 self.di...
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__author__ = 'david' import os import sys from ifind.seeker.trec_qrel_handler import TrecQrelHandler def ratio(rels, nonrels): """ expect two floats """ dem = rels + nonrels if dem > 0.0: return round((rels * rels) / dem, 2) else: return 0.0 def get_perf(): OUT_FILE = 'user_pe...
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__author__ = 'david' import RPi.GPIO as GPIO import time def updateLEDs(grid, x, y): x_channel_list = x y_channel_list = y numx = numy = 0 for x in grid: for y in x: if (y): GPIO.output(x_channel_list[numx], GPIO.HIGH) GPIO.output(y_channel_list[numy]...
{ "repo_name": "TheRedshift/AudioAffair", "path": "src/lights.py", "copies": "1", "size": "1510", "license": "mit", "hash": -1390069222630456000, "line_mean": 26.9814814815, "line_max": 63, "alpha_frac": 0.5132450331, "autogenerated": false, "ratio": 3.2683982683982684, "config_test": false, "...
__author__ = 'David' class HexCharacterMapping: characters = {} def __init__(self): self.characters[' '] = ' ' self.characters['!'] = '!' self.characters['"'] = '"' self.characters['#'] = '#' self.characters['$'] = '$' self.characters['...
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__author__ = 'david' from ifind.common.language_model import LanguageModel from simiir.text_classifiers.lm_classifier import LMTextClassifier from simiir.utils.lm_methods import extract_term_dict_from_text import logging log = logging.getLogger('lm_classifer.TopicBasedLMTextClassifier') class TopicBasedLMTextClassif...
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__author__ = 'david' from ifind.common.query_generation import SingleQueryGeneration from ifind.common.language_model import LanguageModel from ifind.common.query_ranker import QueryRanker def extract_term_dict_from_text(text, stopword_file): """ takes text, parses it, and counts how many times each term occu...
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__author__ = 'David' from peewee import * from datetime import datetime from loadextantdata import get_data db = SqliteDatabase("Housing.db") class Housing(Model): """ The base model for the housing database. """ building_name = CharField(max_length=100) address = CharField(max_length=255) n...
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__author__ = 'david' import abc from simiir.text_classifiers.base_classifier import BaseTextClassifier from simiir.utils.data_handlers import get_data_handler from random import random import logging log = logging.getLogger('base_informed_trec_classifier') class BaseInformedTrecTextClassifier(BaseTextClassifier): ...
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__author__ = "David" import requests import json import sys from add_playlist import add_playlist from youtube_playlist import load_config, send_get_request uploader_id = str() config = load_config() def usage_message(): print("USAGE: {0} [id/username] uploader-details".format(sys.argv[0])) exit(-1) def pr...
{ "repo_name": "Ratheronfire/YouTube-Playlist-Manager", "path": "find_account_playlists.py", "copies": "1", "size": "3843", "license": "mit", "hash": -2401400945610634000, "line_mean": 32.7192982456, "line_max": 118, "alpha_frac": 0.5576372626, "autogenerated": false, "ratio": 3.881818181818182, ...
__author__ = 'David' import sys from PyQt4 import QtGui, QtCore, uic from pgdb import PGDatabase form_class = uic.loadUiType("App/mainUI.ui")[0] class GUI(QtGui.QMainWindow, form_class): def __init__(self, parent=None): QtGui.QMainWindow.__init__(self, parent) self.setupUi(self) self.dat...
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__author__ = 'david' import telnetlib import socket from time import sleep class PioneerAvClientException(Exception): pass class VSX528Telnet(object): "Telnet client to Pioneer VSX-528 AV""" INPUTS = { "CD" : "01", "TUNER" : "02", "DVD" : "04", ...
{ "repo_name": "encinas/pioneeravclient", "path": "pioneeravclient/clients.py", "copies": "1", "size": "3024", "license": "bsd-3-clause", "hash": 776796296398712000, "line_mean": 28.0865384615, "line_max": 86, "alpha_frac": 0.4990079365, "autogenerated": false, "ratio": 3.7333333333333334, "conf...
__author__ = 'David' class FacebookUser: facebookUserId = 0 userName = '' name = '' @classmethod def ini(self, facebookuserid: int, firstname: str, gender: str, lastname: str, link: str, locale: str, name: str, username: str): self.facebookUserId = facebookuserid self...
{ "repo_name": "idcodeoverflow/SocialNetworkAnalyzer", "path": "EntitiesLayout/FacebookUser.py", "copies": "1", "size": "1240", "license": "mit", "hash": 4908739451044219000, "line_mean": 29.243902439, "line_max": 111, "alpha_frac": 0.5177419355, "autogenerated": false, "ratio": 3.8271604938271606...
__author__ = 'David' import psycopg2 class PGDatabase(object): def __init__(self): # Connect to a database url = "postgres://vqesjlxdyoxqvq:HR5OD_Svzd48Nwzu6FN4-VTZd6@ec2-54-243-245-159.compute-1.amazonaws.com:5432/dabosh8r2vtap1" self.connection = psycopg2.connect(url) # Open a ...
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__author__ = 'davidnovogrodsky_wrk' # making a port scanner __author__ = 'davidnovogrodsky_wrk' import socket import time import threading from queue import Queue # the print command is not thread safe # to prevent collisions use a lock print_lock = threading.Lock() target = 'pythonprogramming.net' # define the por...
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__author__ = 'David' __version__ = 2 import os import redis import base64 import cPickle from ifind.seeker.trec_qrel_handler import TrecQrelHandler # # Revised datahandler classes -- considering code refactoring in September 2017. # Author: David Maxwell # Date: 2017-09-24 # def get_data_handler(filename=None, ho...
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__author__ = 'David Oreper' class PeopleDataKeys: def __init__(self): pass MANAGER = "Manager" NAME = "HR Name" NICK_NAME = "Nickname" LEVEL = "Level" TITLE = "Title" FUNCTION = "Function" PROJECT = "Project" #PROJECT = "Cost Center" FEATURE_TEAM = "Feature Team" TYP...
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__author__ = 'David Oreper' class FilterCriteria: def __init__(self,): pass def matches(self, aPerson): return True class KeyMatchesCriteria(FilterCriteria): def __init__(self, expectedValue): FilterCriteria.__init__(self) self.expectedValue = expectedValue or "" def...
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import unittest from sunpy.roi.chaincode import Chaincode import numpy as np class CCTests(unittest.TestCase): def testEnds(self): cc = Chaincode([0, 0], "2460") # Can I test more than one path? How? end = [0, 0] self.failUnless(cc.matchend(end)) def testEndsFalse(self): cc =...
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"""app.controllers.forms Define all form objects used in the application. """ # Import required data from the Flask WTForms extension. from flask.ext.wtf import Form from flask.ext.wtf.file import FileField, FileAllowed, FileRequired from wtforms import StringField, SubmitField from wtforms.validators import Require...
{ "repo_name": "davidtimmons/text-scalpel-app", "path": "app/controllers/forms.py", "copies": "1", "size": "1081", "license": "mit", "hash": -2448655471722583600, "line_mean": 30.7941176471, "line_max": 78, "alpha_frac": 0.6216466235, "autogenerated": false, "ratio": 4.6594827586206895, "config_...
"""app.models.visitor Sets up the database models associated with an application visitor. """ # Import the Flask SQLAlchemy database object associated with this application. from ..createapp import db class User(db.Model): """Create a user database model to store account state information.""" # Create SQL...
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"""app.views.routes Registers the application site map on the Flask blueprint object and manages app view functionality presented to the user. """ from flask import current_app, redirect, render_template, session, url_for from werkzeug import secure_filename from ..createapp import db from ..createblueprint import b...
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__author__ = 'daweim0' import os import datasets import datasets.imdb import cPickle import numpy as np import cv2 from fcn.config import cfg class lov_synthetic(datasets.imdb): def __init__(self, image_set, lov_path = None): datasets.imdb.__init__(self, 'lov_synthetic_' + image_set) self._image_s...
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__author__ = 'Dawei' import math longest = 1 longestStart = 1 computed = {1:1} def getCount(i): number = i count = 0 while True: if number in computed: return computed[number] if number % 2 == 0: lognumber = math.log2(number) intlognumber = int(logn...
{ "repo_name": "fresky/ProjectEulerSolution", "path": "014.py", "copies": "1", "size": "1148", "license": "mit", "hash": -5321454442302309000, "line_mean": 21.0769230769, "line_max": 52, "alpha_frac": 0.5069686411, "autogenerated": false, "ratio": 3.6913183279742765, "config_test": false, "has...
__author__ = 'Dawei' bignumber = ''' 37107287533902102798797998220837590246510135740250 46376937677490009712648124896970078050417018260538 74324986199524741059474233309513058123726617309629 91942213363574161572522430563301811072406154908250 23067588207539346171171980310421047513778063246676 892616706966236338201363784...
{ "repo_name": "fresky/ProjectEulerSolution", "path": "013.py", "copies": "1", "size": "5581", "license": "mit", "hash": -1193688646553723100, "line_mean": 40.3481481481, "line_max": 50, "alpha_frac": 0.9485755241, "autogenerated": false, "ratio": 2.3234804329725227, "config_test": false, "has...
__author__ = 'Dawei' words = {1:'one',2:'two',3:'three',4:'four',5:'five',6:'six',7:'seven',8:'eight',9:'nine',10:'ten' ,11:'eleven',12:'twelve', 13:'thirteen', 14:'fourteen', 15:'fifteen' , 16:'sixteen',17:'seventeen',18:'eighteen',19:'nineteen', 20:'twenty'} twowords = {2:'twenty' , 3:'thirty', 4:'forty'...
{ "repo_name": "fresky/ProjectEulerSolution", "path": "017.py", "copies": "1", "size": "1208", "license": "mit", "hash": -306416977183477060, "line_mean": 23.6734693878, "line_max": 98, "alpha_frac": 0.6100993377, "autogenerated": false, "ratio": 2.6666666666666665, "config_test": false, "has_...
__author__ = 'dbaker' import hashlib import optparse import os from shutil import copyfile def hashfile(filePath): sha1 = hashlib.sha1() f = open(filePath, 'rb') try: sha1.update(f.read()) finally: f.close() return sha1.hexdigest() parser = optparse.OptionParser() parser.add_o...
{ "repo_name": "daniebker/PyNewcopy", "path": "CopyNewFiles.py", "copies": "1", "size": "1539", "license": "mit", "hash": 828405050522693200, "line_mean": 30.4081632653, "line_max": 96, "alpha_frac": 0.604288499, "autogenerated": false, "ratio": 4.335211267605634, "config_test": false, "has_no...
__author__ = 'dborysenko' from pysphere import VIServer from models import Vcenter import ssl def connect_vcenter(vcenter): #default_context = ssl._create_default_https_context server = VIServer() try: #ssl._create_default_https_context = ssl._create_unverified_context server.connect(vcent...
{ "repo_name": "borisensx/ansiblePower", "path": "vmware/vmvc.py", "copies": "1", "size": "1353", "license": "mit", "hash": 1349740994675121700, "line_mean": 28.4130434783, "line_max": 85, "alpha_frac": 0.6614929786, "autogenerated": false, "ratio": 3.5793650793650795, "config_test": false, "h...
__author__ = 'dcard' from optparse import OptionParser import matplotlib.pyplot as plt import numpy as np import pandas as pd from ..preprocessing import label_reader def main(): usage = "%prog dataset filename.csv" parser = OptionParser(usage=usage) (options, args) = parser.parse_args() find_mos...
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__author__ = 'dcl9' from render import render_template import argparse import yaml def generate_preferences_track_dict(metadata): d = dict() d['track_name'] = metadata['track_name'] d['bigbed_url'] = metadata['track_filename'] d['short_label'] = '{} vs. {}'.format(metadata['proteins'][0], metadata['pro...
{ "repo_name": "Duke-GCB/TrackHubGenerator", "path": "python/render/render_tracks.py", "copies": "1", "size": "1902", "license": "mit", "hash": -1480492012125097700, "line_mean": 35.5769230769, "line_max": 158, "alpha_frac": 0.6366982124, "autogenerated": false, "ratio": 3.414721723518851, "conf...
__author__ = 'dc' import uuid import random import tornado.web import sae.kvdb kv = sae.kvdb.KVClient() op_set = ('up', 'down', 'left', 'right') status_set = ('start', 'running', 'finish', 'failed') main_info = '''<html> <head> <title>2048judge</title> </head> <body> <p>welcome to 2048 ai judge</p> <p>first use</...
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__author__ = 'dcowden' """ Tests for CadQuery Selectors These tests do not construct any solids, they test only selectors that query an existing solid """ import math import unittest,sys import os.path #my modules from tests import BaseTest,makeUnitCube,makeUnitSquareWire from cadquery import * from ca...
{ "repo_name": "huskier/cadquery", "path": "tests/TestCQSelectors.py", "copies": "1", "size": "17196", "license": "apache-2.0", "hash": 9137331437236900000, "line_mean": 36.5480349345, "line_max": 113, "alpha_frac": 0.5377413352, "autogenerated": false, "ratio": 3.2052190121155637, "config_test"...
__author__ = 'ddeconti' # Goes through fda approved drug list from Joe # Scrapes wikipedia for the drug smiles # Gets unique smiles string from set # prints to screen for analysis outside script import random import re import sys import time import wikipedia from bs4 import BeautifulSoup def scrape_for_smiles(name, ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/file_manipulation/fda_approved_smiles_wikipedia_scrape.py", "copies": "1", "size": "2870", "license": "mit", "hash": -5231856349739147000, "line_mean": 26.0754716981, "line_max": 78, "alpha_frac": 0.5843205575, "autogenerated": false,...
__author__ = 'ddeconti' import base64 import numpy import sys import pickle from io import BytesIO from flask import Flask, render_template, request, make_response, send_file from rdkit import DataStructs from rdkit.Chem import AllChem, MolFromSmiles, Draw #from app import app app = Flask(__name__) @app.route('/'...
{ "repo_name": "dkdeconti/PAINS-train", "path": "web_app_frontend/app/views.py", "copies": "1", "size": "2396", "license": "mit", "hash": 322642044279495600, "line_mean": 26.5402298851, "line_max": 75, "alpha_frac": 0.5976627713, "autogenerated": false, "ratio": 3.422857142857143, "config_test":...
__author__ = 'ddeconti' import FileHandler import math import numpy import pickle import sys from bokeh.plotting import figure, output_file, show, HBox from rdkit.Chem import AllChem, MolFromSmiles def plot_scatter(x, y, title, x_label, y_label, color="red"): plot = figure(x_axis_label=x_label, ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/clustering/lregress_predicted_PAINS.py", "copies": "1", "size": "2788", "license": "mit", "hash": -3652999253744932400, "line_mean": 31.0574712644, "line_max": 77, "alpha_frac": 0.581061693, "autogenerated": false, "ratio": 3.408312...
__author__ = 'ddeconti' import FileHandler import matplotlib.pyplot as plt import numpy import sys import scipy.cluster.hierarchy as hcluster from bokeh.plotting import figure, output_file, show, VBox, HBox from rdkit import DataStructs from sklearn.decomposition.pca import PCA def pca_plot(fp_list, clusters): ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/clustering/hclust_PAINS.py", "copies": "1", "size": "1977", "license": "mit", "hash": 6109634984811112000, "line_mean": 28.5223880597, "line_max": 80, "alpha_frac": 0.5897824987, "autogenerated": false, "ratio": 3.2094155844155843, ...
__author__ = 'ddeconti' import FileHandler import numpy import pickle import random import sys from rdkit.Chem import AllChem, SDMolSupplier from rdkit import Chem, DataStructs from sklearn.cross_validation import train_test_split, StratifiedKFold from sklearn.ensemble import RandomForestClassifier def optimize_rf(t...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/random_forest_analysis.py", "copies": "1", "size": "4363", "license": "mit", "hash": 4448526765426525700, "line_mean": 33.3622047244, "line_max": 78, "alpha_frac": 0.5340362136, "autogenerated": false, "ratio": 3.28786737...
__author__ = 'ddeconti' import FileHandler import numpy import random import pickle import sys from rdkit import DataStructs from rdkit.Chem import AllChem, SDMolSupplier from sklearn.cross_validation import train_test_split from sklearn.neighbors import KNeighborsClassifier def optimize_knn(target_train, target_tes...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/knn_analysis.py", "copies": "1", "size": "3662", "license": "mit", "hash": -7822300753026449000, "line_mean": 31.4159292035, "line_max": 78, "alpha_frac": 0.5674494812, "autogenerated": false, "ratio": 3.1487532244196044,...
__author__ = 'ddeconti' import FileHandler import numpy import random import sys from bokeh.plotting import figure, output_file, show, VBox, HBox from rdkit import DataStructs from rdkit.Chem import AllChem, SDMolSupplier from sklearn.decomposition.pca import PCA from sklearn.cross_validation import train_test_split ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/clustering/pca_plots_on_fp.py", "copies": "1", "size": "3717", "license": "mit", "hash": -8352905608510267000, "line_mean": 33.7476635514, "line_max": 77, "alpha_frac": 0.5881086898, "autogenerated": false, "ratio": 2.93370165745856...
__author__ = 'ddeconti' import FileHandler import pickle import sys from bokeh.palettes import Blues9 from bokeh.plotting import output_file, figure, show, VBox, HBox from bokeh.charts import Histogram, HeatMap from rdkit import DataStructs def similarity_compare(fp): tanimoto_matrix = [[1] * len(fp)] * len(fp) ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/basic_stats_plotting.py", "copies": "1", "size": "3480", "license": "mit", "hash": -36656988482466296, "line_mean": 31.2314814815, "line_max": 72, "alpha_frac": 0.6060344828, "autogenerated": false, "ratio": 3.14647377938...
__author__ = 'ddeconti' import FileHandler import random import sys from bokeh.charts import output_file, Histogram, show from bokeh.models import Range1d from rdkit.Chem.Fingerprints import FingerprintMols from rdkit.Chem import AllChem, DataStructs, SDMolSupplier, Fingerprints def randomly_pick_from_sdf(sdf_filen...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/histogram.py", "copies": "1", "size": "2269", "license": "mit", "hash": 6381512365689395000, "line_mean": 27.7341772152, "line_max": 72, "alpha_frac": 0.6315557514, "autogenerated": false, "ratio": 2.950585175552666, "c...
__author__ = 'ddeconti' import FileObjects import random import re import sys from rdkit.Chem import AllChem, MolFromSmiles from rdkit.Chem.rdSLNParse import MolFromSLN from rdkit.Chem import SDMolSupplier class WikiScrapedDB(): ''' Custom wrapper around drug name - side effect counts - gene count - SMILES ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/FileHandler.py", "copies": "2", "size": "8509", "license": "mit", "hash": -5555985953902499000, "line_mean": 27.9421768707, "line_max": 78, "alpha_frac": 0.5233282407, "autogenerated": false, "ratio": 3.7435107787065554, ...
__author__ = 'ddeconti' import FileObjects import re import sys from rdkit.Chem import AllChem, MolFromSmiles from rdkit.Chem.rdSLNParse import MolFromSLN from rdkit.Chem import SDMolSupplier class WikiScrapedDB(): ''' Custom wrapper around drug name - side effect counts - gene count - SMILES Produce a ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/clustering/FileHandler.py", "copies": "1", "size": "7819", "license": "mit", "hash": 8171442052276227000, "line_mean": 27.4327272727, "line_max": 78, "alpha_frac": 0.5223174319, "autogenerated": false, "ratio": 3.7537205952952473, ...
__author__ = 'ddeconti' import numpy import pickle from rdkit.Chem import AllChem, MolFromSmiles from rdkit import DataStructs import sys def parse_smiles(rf, fda_filename): try: handle = open(fda_filename, 'rU') except IOError: sys.stderr.write("IOError\n") sys.exit() fpm_list = ...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/file_manipulation/filter_fda_for_PAINS.py", "copies": "1", "size": "1239", "license": "mit", "hash": 6310865192790266000, "line_mean": 24.8125, "line_max": 68, "alpha_frac": 0.5528652139, "autogenerated": false, "ratio": 3.144670050...
__author__ = 'ddeconti' import pickle import FileHandler import sys import numpy import random from bokeh.plotting import figure, output_file, show, VBox, HBox from rdkit import DataStructs from rdkit.Chem import AllChem, SDMolSupplier def randomly_pick_from_sdf(sdf_filename): sdf_struct = SDMolSupplier(sdf_fil...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/rf_roc.py", "copies": "1", "size": "2448", "license": "mit", "hash": 2386385120189677000, "line_mean": 25.3225806452, "line_max": 71, "alpha_frac": 0.5477941176, "autogenerated": false, "ratio": 3.3534246575342466, "con...
__author__ = 'ddeconti' import sys def parse_chemicals(filename): chem_dict = {} try: handle = open(filename, 'rU') except IOError as e: sys.stderr.write("IOError: " + str(e) + "\nError in parse_chemicals()\n") sys.exit() for line in handle: lin...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/build_promiscuity_index_from_stitch.py", "copies": "1", "size": "1600", "license": "mit", "hash": -8201000231034797000, "line_mean": 27.5892857143, "line_max": 62, "alpha_frac": 0.54375, "autogenerated": false, "ratio": 3...
__author__ = 'ddeconti' ''' Compresses total drugs by number of interactions. ''' import re import sys def print_drug(name, num): print "Test", name, num outstr = '\t'.join([name, str(num)]) sys.stdout.write(outstr + '\n') def parse_chem(filename): try: handle = open(filename, 'rU') ex...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/file_manipulation/compress_dsig_file.py", "copies": "1", "size": "1404", "license": "mit", "hash": 579136021452841900, "line_mean": 23.224137931, "line_max": 53, "alpha_frac": 0.5092592593, "autogenerated": false, "ratio": 3.5816326...
__author__ = 'ddeconti' import FileHandler import numpy import sys from bokeh.plotting import figure, output_file, show, VBox, HBox from rdkit import DataStructs from sklearn.cluster import DBSCAN from sklearn.decomposition.pca import PCA def train_pca(pains_fps, num_components=3): ''' Dimensional reductio...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/clustering/dbscan_PAINS_pca.py", "copies": "1", "size": "1174", "license": "mit", "hash": -727271860407655800, "line_mean": 23.9787234043, "line_max": 74, "alpha_frac": 0.6669505963, "autogenerated": false, "ratio": 3.15591397849462...
__author__ = 'ddeconti' import FileHandler import numpy import sys from bokeh.plotting import figure, output_file, show, VBox, HBox from rdkit import DataStructs from sklearn.cluster import KMeans from sklearn.decomposition.pca import PCA from sklearn.metrics import silhouette_score def train_pca(pains_fps, num_co...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/clustering/kmeans_clustering_of_pca_reduction.py", "copies": "1", "size": "4434", "license": "mit", "hash": -641481312068564, "line_mean": 30.6714285714, "line_max": 74, "alpha_frac": 0.5906630582, "autogenerated": false, "ratio": 3...
__author__ = 'ddeconti' import FileHandler import pandas import random import sys from bokeh.palettes import Blues9 from bokeh.charts import HeatMap, output_file, show from rdkit.Chem.Fingerprints import FingerprintMols from rdkit.Chem import AllChem, DataStructs, SDMolSupplier, Fingerprints def randomly_pick_from...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/classifier/heatmap.py", "copies": "1", "size": "2166", "license": "mit", "hash": -7639049572899019000, "line_mean": 23.6136363636, "line_max": 74, "alpha_frac": 0.6108033241, "autogenerated": false, "ratio": 2.911290322580645, "co...
__author__ = 'ddeconti' import random import re import sys import time import wikipedia from bs4 import BeautifulSoup ''' Scraping Wikipedia for SMILES for drugbank csv from Aqeel. Deprecated... ''' def scrape_for_smiles(name): ''' Scrapes wikipedia for smiles string of given drug name :param name: nam...
{ "repo_name": "dkdeconti/PAINS-train", "path": "training_methods/file_manipulation/scrape_wikipedia_for_smiles.py", "copies": "1", "size": "3272", "license": "mit", "hash": 1241002158242353700, "line_mean": 28.2142857143, "line_max": 79, "alpha_frac": 0.5861858191, "autogenerated": false, "ratio"...
__author__ = 'ddurando' """ POX component - arpnat The aim of this component is to address the problem of ARP poisoning in SDN networks """ from pox.core import core import pox.openflow.libopenflow_01 as of from pox.lib.packet.ethernet import ethernet, ETHER_BROADCAST from pox.lib.revent import * from pox.lib.packet....
{ "repo_name": "ddurando/pox.carp", "path": "ext/mr_arpnat.py", "copies": "2", "size": "10608", "license": "apache-2.0", "hash": -5639258446158064000, "line_mean": 38.4349442379, "line_max": 167, "alpha_frac": 0.5266779789, "autogenerated": false, "ratio": 3.7750889679715303, "config_test": fals...
__author__ = 'ddustin' import certifi import json from threading import Thread, Condition from urllib2 import Request, urlopen, URLError from datetime import datetime, timedelta class BtcPrice(Thread): """ A class for loading and caching the current Bitcoin exchange price. There only needs to be one inst...
{ "repo_name": "cpacia/OpenBazaar-Server", "path": "market/btcprice.py", "copies": "2", "size": "3402", "license": "mit", "hash": -2331751910465916000, "line_mean": 31.4, "line_max": 116, "alpha_frac": 0.6058201058, "autogenerated": false, "ratio": 4.412451361867705, "config_test": false, "has...
__author__ = 'ddustin' import json from threading import Thread, Condition from urllib2 import Request, urlopen, URLError from datetime import datetime, timedelta class BtcPrice(Thread): """ A class for loading and caching the current Bitcoin exchange price. There only needs to be one instance of the cla...
{ "repo_name": "tomgalloway/OpenBazaar-Server", "path": "market/btcprice.py", "copies": "2", "size": "3363", "license": "mit", "hash": -2898122283335376400, "line_mean": 31.3365384615, "line_max": 116, "alpha_frac": 0.6036277134, "autogenerated": false, "ratio": 4.430830039525691, "config_test":...
__author__ = 'ddustin' import time from twisted.trial import unittest from market.btcprice import BtcPrice class MarketProtocolTest(unittest.TestCase): def test_BtcPrice(self): btcPrice = BtcPrice() btcPrice.start() time.sleep(0.01) rate = BtcPrice.instance().get("USD") s...
{ "repo_name": "saltduck/OpenBazaar-Server", "path": "market/tests/test_btcprice.py", "copies": "6", "size": "1644", "license": "mit", "hash": 1016538267848418700, "line_mean": 27.8421052632, "line_max": 56, "alpha_frac": 0.6161800487, "autogenerated": false, "ratio": 3.4465408805031448, "config...
__author__ = 'Deathnerd' import os class Base(): """Base Config""" # General App ENV = os.environ['CODENINJA_SERVER_ENV'] SECRET_KEY = os.environ['CODENINJA_SECRET_KEY'] APP_DIR = os.path.abspath(os.path.dirname(__file__)) PROJECT_ROOT = os.path.abspath(os.path.join(APP_DIR, os.pardir)) # SQLAlchemy SQLALCHE...
{ "repo_name": "Deathnerd/iamacodeninja", "path": "codeninja/settings.py", "copies": "1", "size": "1527", "license": "mit", "hash": -1301975894223493400, "line_mean": 20.8285714286, "line_max": 107, "alpha_frac": 0.6810740013, "autogenerated": false, "ratio": 2.7464028776978417, "config_test": f...
__author__ = 'deathowl' from datetime import datetime, timedelta from notification.tasks import send_notifications from openduty.escalation_helper import get_escalation_for_service from django.utils import timezone from notification.models import ScheduledNotification from django.conf import settings class Notifica...
{ "repo_name": "ustream/openduty", "path": "notification/helper.py", "copies": "1", "size": "4337", "license": "mit", "hash": 340565767379853950, "line_mean": 43.7113402062, "line_max": 193, "alpha_frac": 0.63707632, "autogenerated": false, "ratio": 4.4757481940144475, "config_test": false, "h...
__author__ = 'deathowl' from django.contrib.auth.models import User, Group from rest_framework import serializers from .models import Incident, SchedulePolicy, SchedulePolicyRule class UserSerializer(serializers.HyperlinkedModelSerializer): class Meta: model = User fields = ('url', 'username', 'e...
{ "repo_name": "ustream/openduty", "path": "openduty/serializers.py", "copies": "1", "size": "1671", "license": "mit", "hash": 6162830010275109000, "line_mean": 27.8103448276, "line_max": 89, "alpha_frac": 0.7175344105, "autogenerated": false, "ratio": 4.34025974025974, "config_test": false, "...
__author__ = 'deathowl' from django.http import HttpResponseRedirect from django.template.response import TemplateResponse from django.contrib.auth.decorators import login_required from .models import Calendar, User, SchedulePolicy, SchedulePolicyRule from django.http import Http404 from django.views.decorators.http ...
{ "repo_name": "ustream/openduty", "path": "openduty/escalation.py", "copies": "1", "size": "3593", "license": "mit", "hash": -5912935396754181000, "line_mean": 32.8962264151, "line_max": 109, "alpha_frac": 0.6462566101, "autogenerated": false, "ratio": 4.302994011976048, "config_test": false, ...
__author__ = 'deathowl' from django.template.response import TemplateResponse from django.contrib.auth.decorators import login_required from django.core.paginator import Paginator, PageNotAnInteger, EmptyPage from django.contrib import messages from django.conf import settings from .models import EventLog, Service ...
{ "repo_name": "ustream/openduty", "path": "openduty/event_log.py", "copies": "1", "size": "1734", "license": "mit", "hash": -5969423230256968000, "line_mean": 34.4081632653, "line_max": 103, "alpha_frac": 0.6770472895, "autogenerated": false, "ratio": 3.827814569536424, "config_test": false, ...
__author__ = 'deathowl' from .models import User, SchedulePolicyRule, Service from datetime import datetime, timedelta from django.utils import timezone from schedule.periods import Day from datetime import timedelta def get_current_events_users(calendar): now = timezone.make_aware(datetime.now(), timezone.get_cu...
{ "repo_name": "ustream/openduty", "path": "openduty/escalation_helper.py", "copies": "1", "size": "2229", "license": "mit", "hash": 3584086175892779000, "line_mean": 37.4310344828, "line_max": 103, "alpha_frac": 0.6083445491, "autogenerated": false, "ratio": 3.9803571428571427, "config_test": f...
__author__ = 'deathowl' from openduty import escalation_helper from urllib import quote from django.shortcuts import render_to_response from django.template import RequestContext from django.http import HttpResponseRedirect from django.template.response import TemplateResponse from django.contrib.auth.decorators impor...
{ "repo_name": "ustream/openduty", "path": "openduty/schedules.py", "copies": "1", "size": "4463", "license": "mit", "hash": 8142238887594357000, "line_mean": 36.1916666667, "line_max": 110, "alpha_frac": 0.6381357831, "autogenerated": false, "ratio": 4.214353163361662, "config_test": false, "...
__author__ = 'deathowl' from time import sleep, time import datetime from openduty.serializers import NoneSerializer from openduty.models import Incident from rest_framework.response import Response from rest_framework import status from rest_framework import viewsets from .celery import add from random import randint...
{ "repo_name": "ustream/openduty", "path": "openduty/healthcheck.py", "copies": "1", "size": "1429", "license": "mit", "hash": 4214993582234910000, "line_mean": 32.2325581395, "line_max": 83, "alpha_frac": 0.6655003499, "autogenerated": false, "ratio": 4.317220543806647, "config_test": false, ...
__author__ = 'deathowl' import logging from sleekxmpp import ClientXMPP from sleekxmpp.xmlstream import resolver, cert import ssl class SendClient(ClientXMPP): def verify_gtalk_cert(self, raw_cert): hosts = resolver.get_SRV(self.boundjid.server, 5222, self.dns_service, ...
{ "repo_name": "ustream/openduty", "path": "notification/notifier/xmppclient.py", "copies": "1", "size": "1555", "license": "mit", "hash": 77150815012363540, "line_mean": 32.1063829787, "line_max": 86, "alpha_frac": 0.5665594855, "autogenerated": false, "ratio": 3.926767676767677, "config_test":...
__author__ = 'deathowl' import uuid import hmac from hashlib import sha1 from django.db import models from django.utils.translation import ugettext_lazy as _ from django.utils.encoding import python_2_unicode_compatible from django.contrib.auth.models import User from uuidfield import UUIDField from django.core.excep...
{ "repo_name": "ustream/openduty", "path": "openduty/models.py", "copies": "1", "size": "7875", "license": "mit", "hash": 8096037636218187000, "line_mean": 31.012195122, "line_max": 141, "alpha_frac": 0.6322539683, "autogenerated": false, "ratio": 3.9493480441323974, "config_test": false, "has...
__author__ = 'Debanjan Mahata' from twython import TwythonStreamer from TwitterAuthentication import keyList from time import sleep from random import randint import sys,codecs # from pymongo import MongoClient # #connecting to MongoDB database # mongoObj = MongoClient() # #setting the MongoDB database # db = mongoOb...
{ "repo_name": "dxmahata/TwitterSentimentAnalysis", "path": "TwitterDataCollect/StreamingTweetCollection.py", "copies": "1", "size": "1271", "license": "mit", "hash": -5928706288796709000, "line_mean": 22.537037037, "line_max": 110, "alpha_frac": 0.6624704957, "autogenerated": false, "ratio": 3.68...
__author__ = 'Debanjan Mahata' import time from twython import Twython, TwythonError from pymongo import MongoClient import TwitterAuthentication as t_auth def collect_tweets(path_name): emotion_sentiment_mapping = {"joy":"positive","sadness":"negative","anger":"negative","fear":"negative","disgust":"negative"...
{ "repo_name": "dxmahata/TwitterSentimentAnalysis", "path": "TwitterDataCollect/collectEmotionLabeledTweets.py", "copies": "1", "size": "2078", "license": "mit", "hash": 9055417963577953000, "line_mean": 27.8611111111, "line_max": 129, "alpha_frac": 0.6198267565, "autogenerated": false, "ratio": 3...
__author__ = 'Debanjan Mahata' import time from twython import Twython, TwythonError from pymongo import MongoClient import TwitterAuthentication as t_auth def collect_tweets(path_name): try: #connecting to MongoDB database mongoObj = MongoClient() #setting the MongoDB database ...
{ "repo_name": "dxmahata/TwitterSentimentAnalysis", "path": "TwitterDataCollect/collectSentimentLabeledTweets.py", "copies": "1", "size": "1741", "license": "mit", "hash": 6342942335825776000, "line_mean": 27.5409836066, "line_max": 124, "alpha_frac": 0.6341183228, "autogenerated": false, "ratio":...
__author__ = 'Deedasmi' import re # User defined variables. And pi. udv = {'pi': '3.1415926535'} # User defined functions. And test function udf = {'test': (('x', 'y'), "x+2/y")} # Set of operators OPERATORS = {"+", "-", "*", "/", "^", "%"} # Set of all allowed symbols ALLOWED_SYMBOLS = {"+", "-", "*", "/", "^", "%", ...
{ "repo_name": "Deedasmi/PyCalc", "path": "pycalc/calc.py", "copies": "1", "size": "12456", "license": "mit", "hash": 3044726596956056600, "line_mean": 35.4210526316, "line_max": 116, "alpha_frac": 0.5539499037, "autogenerated": false, "ratio": 4.09064039408867, "config_test": false, "has_no_k...
__author__ = 'deevarvar' import random import unittest import sys import os from subprocess import call print os.getcwd() current_path = os.path.dirname(os.path.realpath(__file__)) lib_path = current_path + "/../../utlib" make_path = current_path + "/../../" print 'lib path is ' + lib_path + ', make path is ' + make_p...
{ "repo_name": "deevarvar/myLab", "path": "book/tlpi_zhiye/ch3/ut/ch3_ut.py", "copies": "1", "size": "1747", "license": "mit", "hash": 303608291389019300, "line_mean": 25.8923076923, "line_max": 102, "alpha_frac": 0.6182026331, "autogenerated": false, "ratio": 3.425490196078431, "config_test": t...
__author__ = 'deevarvar' """ some idea from baidu's interview 1. this file is used to generate the some file template three column column1 column2 column3 chars chars(or empty) digits try to use shell or python to finish """ import random import string def gen_seperator(): va...
{ "repo_name": "deevarvar/myLab", "path": "interview/gen_file.py", "copies": "1", "size": "1140", "license": "mit", "hash": 8005731846400504000, "line_mean": 23.2765957447, "line_max": 108, "alpha_frac": 0.6271929825, "autogenerated": false, "ratio": 3.229461756373938, "config_test": false, "h...
__author__ = 'degorenko' import rst2pdf import docutils def generate_rst(json_data): f = open("report.rst", "w") from email.Utils import formatdate cur_time = formatdate(timeval=None, localtime=True) write_headers(f, '{0} {1}{2}'.format("Dependency checker ", cur_time, "\n"), True) write_parame...
{ "repo_name": "degorenko/dep_checker", "path": "dep_checker/reporter/report.py", "copies": "1", "size": "3857", "license": "apache-2.0", "hash": -8420278302341125000, "line_mean": 37.58, "line_max": 94, "alpha_frac": 0.5014259787, "autogenerated": false, "ratio": 3.708653846153846, "config_test...
__author__ = 'dejawa' from docker import Client import dockermanager.configure as conf import psutil import json class MinionController: conn = Client(base_url=conf.host+':'+conf.port) #docker mongo db image create/start/stop/replset/sharding def getAllContainers(self): return self.conn.containers(...
{ "repo_name": "hoonkim/Lesser", "path": "dockermanager/controller.py", "copies": "1", "size": "4602", "license": "mit", "hash": 3732284722979614700, "line_mean": 29.4768211921, "line_max": 80, "alpha_frac": 0.5395480226, "autogenerated": false, "ratio": 3.8222591362126246, "config_test": false,...
__author__ = 'deksan' import logging import urllib import feedparser from flexget import plugin, validator from flexget.entry import Entry from flexget.event import event from flexget.plugins.api_tvrage import lookup_series log = logging.getLogger('newznab') class Newznab(object): """ Newznab search plugi...
{ "repo_name": "v17al/Flexget", "path": "flexget/plugins/search_newznab.py", "copies": "1", "size": "3959", "license": "mit", "hash": 6076613967725724000, "line_mean": 33.4260869565, "line_max": 115, "alpha_frac": 0.5657994443, "autogenerated": false, "ratio": 3.9043392504930967, "config_test": ...
__author__ = 'delandtj' from JumpScale import j import os import os.path import subprocess import sys import time command_name = sys.argv[0] vsctl = "/usr/bin/ovs-vsctl" ofctl = "/usr/bin/ovs-ofctl" ip = "/sbin/ip" ethtool = "/sbin/ethtool" PHYSMTU = 2000 # TODO : errorhandling def send_to_syslog(msg): pass ...
{ "repo_name": "Jumpscale/jumpscale_core8", "path": "lib/JumpScale/sal/openvswitch/VXNet/utils.py", "copies": "1", "size": "11295", "license": "apache-2.0", "hash": -8441063652891443000, "line_mean": 33.8611111111, "line_max": 112, "alpha_frac": 0.6052235502, "autogenerated": false, "ratio": 3.127...
__author__ = 'delandtj' from vxlan import * from netaddr import * def rebuildVXLan(): nl = NetLayout() layout = nl.load() if __name__ == "__main__": print('Getting Config') a = NetLayout() layout = a.load() layout = a.nicdetail pprint_dict(layout) ip_layout = add_ips_to(layout) # ...
{ "repo_name": "Jumpscale/jumpscale6_core", "path": "lib/JumpScale/lib/ovsnetconfig/VXNet/tests.py", "copies": "1", "size": "1336", "license": "bsd-2-clause", "hash": 9030069150539202000, "line_mean": 22.4385964912, "line_max": 57, "alpha_frac": 0.5950598802, "autogenerated": false, "ratio": 2.917...
__author__ = 'delandtj' from vxlan import * from netaddr import * def rebuildVXLan(): nl = NetLayout() layout = nl.load() if __name__ == "__main__": print('Getting Config') a = NetLayout() layout = a.load() layout = a.nicdetail pprint_dict(layout) ip_layout = add_ips_to(layout) #...
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__author__ = 'delandtj' from netaddr import * from netclasses import * from systemlist import * command_name = sys.argv[0] class NetLayout: def __init__(self): self.interfaces = get_all_ifaces() self.nicdetail = {} self.bridges = {} def load(self): self.nicdetail = get_nic_p...
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__author__ = 'delandtj' from netaddr import * from VXNet.netclasses import * from VXNet.systemlist import * command_name = sys.argv[0] class NetLayout: def __init__(self): self.interfaces = get_all_ifaces() self.nicdetail = {} self.bridges = {} def load(self): self.nicdeta...
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__author__ = 'delandtj' from utils import * import fcntl import time import re from netaddr import * from utils import * def acquire_lock(path): """ little tool to do EAGAIN until lockfile released :param path: :return: path """ lock_file = open(path, 'w') while True: send_to_syslog(...
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__author__ = 'delandtj' from utils import * class VXlan(object): def __init__(self,oid,backend='vxbackend'): def bytes(num): return num >> 8, num & 0xFF self.multicastaddr = '239.0.%s.%s' % bytes(oid.oid) self.id = oid self.backend = backend self.name = 'vx-' +...
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__author__ = 'delandtj' from VXNet.utils import * import fcntl import re from netaddr import * def acquire_lock(path): """ little tool to do EAGAIN until lockfile released :param path: :return: path """ lock_file = open(path, 'w') while True: send_to_syslog("attempting to acqu...
{ "repo_name": "Jumpscale/jumpscale_core8", "path": "lib/JumpScale/sal/openvswitch/VXNet/systemlist.py", "copies": "1", "size": "9763", "license": "apache-2.0", "hash": -8516178205446831000, "line_mean": 28.5848484848, "line_max": 114, "alpha_frac": 0.5375396907, "autogenerated": false, "ratio": 3...
__author__ = 'delandtj' from VXNet.utils import * class VXlan: def __init__(self, oid, backend='vxbackend'): def bytes(num): return num >> 8, num & 0xFF self.multicastaddr = '239.0.%s.%s' % bytes(oid.oid) self.id = oid self.backend = backend self.name = 'vx-' ...
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__author__ = 'delandtj' import os import os.path import subprocess import sys import syslog import time command_name = sys.argv[0] vsctl = "/usr/bin/ovs-vsctl" ofctl = "/usr/bin/ovs-ofctl" ip = "/sbin/ip" ethtool = "/sbin/ethtool" PHYSMTU = 2000 # TODO : errorhandling def send_to_syslog(msg): pass #print ms...
{ "repo_name": "Jumpscale/jumpscale6_core", "path": "lib/JumpScale/lib/ovsnetconfig/VXNet/utils.py", "copies": "1", "size": "8985", "license": "bsd-2-clause", "hash": 1908044100854457000, "line_mean": 33.2938931298, "line_max": 166, "alpha_frac": 0.6208124652, "autogenerated": false, "ratio": 3.04...
from __future__ import absolute_import, unicode_literals from django import forms from django.forms.formsets import BaseFormSet from crispy_forms.helper import FormHelper from crispy_forms.layout import Layout, ButtonHolder, Submit, Fieldset, HTML, MultiField, Div, Field from django.contrib.auth import get_user_model ...
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__author__ = "Dell-Ray Sackett" __version__ = "0.1" import pickle from Crypto.PublicKey import RSA from Crypto.Hash import SHA256 from Crypto.Cipher import AES from Crypto import Random import base64 class Message: """ This is a class to hold an encrypted message. It is specifically designed to be pickel...
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__author__ = 'demi' # By Ashwath from forums # Given a list of lists representing a n * n matrix as input, # define a procedure that returns True if the input is an identity matrix # and False otherwise. # An IDENTITY matrix is a square matrix in which all the elements # on the principal/main diagonal are 1 and all ...
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__author__ = 'demi' import string # Write a procedure, rotate which takes as its input a string of lower case # letters, a-z, and spaces, and an integer n, and returns the string constructed # by shifting each of the letters n steps, and leaving the spaces unchanged. # Note that 'a' follows 'z'. You can use an additio...
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__author__ = 'demi' # 1 Gold Star # The built-in <string>.split() procedure works # okay, but fails to find all the words on a page # because it only uses whitespace to split the # string. To do better, we should also use punctuation # marks to split the page into words. # Define a procedure, split_string, that tak...
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__author__ = 'demi' # 2 Gold Stars # One way search engines rank pages # is to count the number of times a # searcher clicks on a returned link. # This indicates that the person doing # the query thought this was a useful # link for the query, so it should be # higher in the rankings next time. # (In Unit 6, we wil...
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__author__ = 'demi' # 6. In video 28. Update, it was suggested that some of the duplicate code in # lookup and update could be avoided by a better design. We can do this by # defining a procedure that finds the entry corresponding to a given key, and # using that in both lookup and update. # Here are the original p...
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__author__ = 'demi' # A list is symmetric if the first row is the same as the first column, # the second row is the same as the second column and so on. Write a # procedure, symmetric, which takes a list as input, and returns the # boolean True if the list is symmetric and False if it is not. def symmetric(lists): ...
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__author__ = 'demi' # By Dimitris_GR from forums # Modify Problem Set 31's (Optional) Symmetric Square to return True # if the given square is antisymmetric and False otherwise. # An nxn square is called antisymmetric if A[i][j]=-A[j][i] # for each i=0,1,...,n-1 and for each j=0,1,...,n-1. def antisymmetric(A): ...
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__author__ = 'demi' # Define a procedure, # # hashtable_add(htable,key,value) # # that adds the key to the hashtable (in # the correct bucket), with the correct # value and returns the new hashtable. # # (Note that the video question and answer # do not return the hashtable, but your code # should do this to pas...
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__author__ = 'demi' # Define a procedure, # hashtable_lookup(htable,key) # that takes two inputs, a hashtable # and a key (string), # and returns the value associated # with that key. def hashtable_lookup(htable, key): bucket = hashtable_get_bucket(htable, key) index_item = None for item in bucket: ...
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__author__ = 'demi' # Define a procedure, # hashtable_update(htable,key,value) # that updates the value associated with key. If key is already in the # table, change the value to the new value. Otherwise, add a new entry # for the key and value. # Hint: Use hashtable_lookup as a starting point. # Make sure that yo...
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__author__ = 'demi' # define a procedure that takes in a string of numbers from 1-9 and # outputs a list with the following parameters: # Every number in the string should be inserted into the list. # If a number x in the string is less than or equal # to the preceding number y, the number x should be inserted # into...
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__author__ = 'demi' # Dictionaries of Dictionaries (of Dictionaries) # The next several questions concern the data structure below for keeping # track of Udacity's courses (where all of the values are strings): # { <hexamester>, { <class>: { <property>: <value>, ... }, # ... }...
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__author__ = 'demi' # Double Gold Star # Khayyam Triangle # The French mathematician, Blaise Pascal, who built a mechanical computer in # the 17th century, studied a pattern of numbers now commonly known in parts of # the world as Pascal's Triangle (it was also previously studied by many Indian, # Chinese, and Pers...
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__author__ = 'demi' #Feeling Lucky #In Unit 6, we implemented a page ranking algorithm, but didn't finish the final #step of using it to improve our search results. For this question, you will use #the page rankings to produce the best output for a given query. #Define a procedure, lucky_search, that takes as input...
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