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#!/bin/env python
"""
Collection of GUI elements created by Pavlo Shchelokovskyy.
This module cannot be used on it own.
Provides following functions:
rgba_wx2mplt - Convert wx.Colour to colour format used by matplotlib
Provides following objects:
OneParamFilePanel - simple panel for processing one file with one... | {
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#!/bin/env python
# ColorImgSort
# Sorts images based on color
# by Ed Salisbury <ed@edsalisbury.net>
# Written: 2013/12/24
import argparse
import os
import os.path
import math
from PIL import Image
class ImgSort():
def __init__(self, **kwargs):
"""Class constructor - sets up the internal variables"""
... | {
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#!/bin/env python
# Command line script to get GB/day from manager, then save to google sheet.
from som.api.google.sheets import Client
from datetime import datetime, timedelta
import subprocess
import argparse
import json
import os
import sys
def get_parser():
parser = argparse.ArgumentParser(
description="... | {
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"path": "scripts/save_google_sheets.py",
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# common qps statistics tool based on log
__author__ = "unix1986@qq.com"
import sys
import platform
# check python version
if sys.version_info < (2, 7, 0):
print ("Current python version %s, "
"but require version %s or above") % \
(platform.python_version(), "2.7.0")
sys.exit(1)
import os
i... | {
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"path": "script/qps.py",
"copies": "1",
"size": "2926",
"license": "bsd-2-clause",
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"has_no_... |
#/bin/env python
#
# compile and decompile Anyka/Chomptech firmware voice files
#
# (c) 2015 Ulrich Sibiller
# use print a a function
from __future__ import print_function
import struct
import mmap
import argparse
import sys
import os
def error(*objs):
print("ERROR:", *objs, file=sys.stderr)
def decompile(infi... | {
"repo_name": "entropia/tip-toi-reveng",
"path": "voicetool/voicetool.py",
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#!/bin/env python
"""
Compute forces of the supercell system created by phonopy and
create FORCE_SETS file, which includes forces on atoms.
Usage:
pmd2phonopy.py [options] PMDINI
Options:
-h, --help Show this help message and exit.
-c, --cutoff=CUTOFF
Cutoff radius of the interatomic pote... | {
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"path": "nappy/pmd/pmd2phonopy.py",
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#!/bin/env python
######################################################################
''' COMPUTE_MASTER.py
=========================
AIM: Cycle through the observability maps and execute stray light computations
Temporal resolution is 60 seconds and orbit step size is given by the max. error
INPUT: files: - obse... | {
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#!/bin/env python
#-------CONFIG--------
# Links to SVN will begin with this and end with path to repo.
# You can find this url by navigating to your repo in a browser.
# It may be helpful to create a validation branch instead of /head/
base_svn_url = "http://my-svn-repo.example.com/!/#RepoName/view/head/"
# The URL ... | {
"repo_name": "JamaSoftware/Jama-SVN",
"path": "jama-svn.py",
"copies": "1",
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"license": "mit",
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"has_... |
#!/bin/env python
'''
Convert macOS keyboard layout files (.keylayout) to
equivalent Windows files (.klc).
'''
import os
import re
import sys
import time
import argparse
import codecs
import unicodedata
import xml.etree.ElementTree as ET
# local modules
from data.klc_data import (
win_to_mac_keycodes, win_keyco... | {
"repo_name": "adobe-type-tools/keyboard-layouts",
"path": "mac2winKeyboard.py",
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#!/bin/env python
"""
Convert the given tab-delimited document into a VCF 4.1 document for annotation with Seattle Seq.
"""
import argparse
import csv
from fastahack import FastaHack
import vcf
from vcf.model import _Record
TEMPLATE_VCF_FILE = "template-4.1.vcf"
VCF_TO_FIELDS = (
("#CHROM", "Chrom"),
("POS", ... | {
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"path": "tab_to_vcf.py",
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# Copyright 2006 Stephen Duncan Jr
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writi... | {
"repo_name": "jrduncans/highcard",
"path": "python/highcard.py",
"copies": "1",
"size": "1532",
"license": "mit",
"hash": 9065112468022161000,
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"alpha_frac": 0.6886422977,
"autogenerated": false,
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"h... |
"""
Copyright 2010-2018 University Of Southern California
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to... | {
"repo_name": "SCECcode/BBP",
"path": "bbp/comps/exsim.py",
"copies": "1",
"size": "21062",
"license": "apache-2.0",
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"h... |
"""
Copyright 2010-2019 University Of Southern California
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to... | {
"repo_name": "SCECcode/BBP",
"path": "bbp/tests/gen_accept_tests.py",
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from errors import DataError
from pool import ConnectionPools
from cursor import Cursor
from bson.son import SON
from functools import partial
class Client(object):
"""
Client connection to represent a remote database.
Internally Client maintains a pool of connections that will live beyond the life o... | {
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from gi.repository import GObject
class Glib3Stream(object):
def __init__(self, socket, **kwargs):
self.__socket = socket
self.__close_id = None
self.__read_id = None
self.__read_queue = []
def write(self, data):
self.__socket.send(data)
def read(self, size, c... | {
"repo_name": "bitly/asyncmongo",
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"ratio": 3.9711684370257965,
"co... |
from threading import Condition
import logging
from errors import TooManyConnections, ProgrammingError
from connection import Connection
class ConnectionPools(object):
""" singleton to keep track of named connection pools """
@classmethod
def get_connection_pool(self, pool_id, *args, **kwargs):
"... | {
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import glib
class Glib2Stream(object):
def __init__(self, socket, **kwargs):
self.__socket = socket
self.__close_id = None
self.__read_id = None
self.__read_queue = []
def write(self, data):
self.__socket.send(data)
def read(self, size, callback):
self... | {
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"path": "asyncmongo/backends/glib2_backend.py",
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"c... |
import logging
from bson.son import SON
import helpers
import message
import functools
_QUERY_OPTIONS = {
"tailable_cursor": 2,
"slave_okay": 4,
"oplog_replay": 8,
"no_timeout": 16}
class Cursor(object):
""" Cursor is a class used to call oeprations on a given db/collection using a specific con... | {
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"path": "asyncmongo/cursor.py",
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import sys
import socket
import struct
import logging
from types import NoneType
import functools
from errors import ProgrammingError, IntegrityError, InterfaceError
import helpers
import asyncjobs
class Connection(object):
"""
:Parameters:
- `host`: hostname or ip of mongo host (not allowed when repl... | {
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"path": "asyncmongo/connection.py",
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import tornado.iostream
class TornadoStream(object):
def __init__(self, socket, **kwargs):
"""
:Parameters:
- `socket`: TCP socket
- `**kwargs`: passed to `tornado.iostream.IOStream`
- `io_loop` (optional): Tornado IOLoop instance.
- `max_buffer_size` (o... | {
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"path": "asyncmongo/backends/tornado_backend.py",
"copies": "3",
"size": "2033",
"license": "apache-2.0",
"hash": -4988585324523647000,
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"autogenerated": false,
"ratio": 3.9862745098039216,
... |
"""
AsyncMongo is an asynchronous library for accessing mongo
http://github.com/bitly/asyncmongo
"""
try:
import bson
except ImportError:
raise ImportError("bson library not installed. Install pymongo >= 1.9 https://github.com/mongodb/mongo-python-driver")
# also update in setup.py
version = "1.3"
version_in... | {
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"path": "asyncmongo/__init__.py",
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... |
"""
Created by Dan Frank on 2012-01-23.
Copyright (c) 2012 bit.ly. All rights reserved.
"""
import sys
assert sys.version_info >= (2, 7), "run this with python2.7"
import simplejson as json
from tornado.httpclient import HTTPRequest
from tornado.httpclient import AsyncHTTPClient
from tornado.ioloop import IOLoop
impor... | {
"repo_name": "bitly/asyncdynamo",
"path": "asyncdynamo/asyncdynamo.py",
"copies": "1",
"size": "17863",
"license": "apache-2.0",
"hash": 7334313306274478000,
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"ratio": 4.554563997960225,
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"""
Created by Dan Frank on 2012-01-25.
Copyright (c) 2012 bit.ly. All rights reserved.
"""
import functools
from tornado.httpclient import HTTPRequest
from tornado.httpclient import AsyncHTTPClient
import xml.sax
import boto
from boto.sts.connection import STSConnection
from boto.sts.credentials import Credentials
f... | {
"repo_name": "0359xiaodong/viewfinder",
"path": "backend/db/async_aws_sts.py",
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"size": "4387",
"license": "apache-2.0",
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"""
This script updates the expected read depths of the input files
for the Combined Haplotype Test. GC content biases and peakiness
of the data (potentially caused by differences in ChIP efficiency
or the expression of a few highly expressed genes) can vary greatly
between individuals, sequencing libraries, and la... | {
"repo_name": "cdeboever3/WASP",
"path": "CHT/update_total_depth.py",
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"size": "11963",
"license": "apache-2.0",
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"""
usage: update_total_depth.py input_file_list output_directory
positional arguments:
input_file_list name of the .txt file containing a list of files for input
out_directory directory to output the updated files
optional arguments:
None
This script is used to update the expected read depths o... | {
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"path": "CHT/update_total_depth.py",
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"license": "apache-2.0",
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"line_max": 162,
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"conf... |
"""
This program reads BAM files and counts the number of reads that match
the alternate and reference allele at every SNP position in the provided
SNP HDF5 data files. The read counts are stored in specified HDF5 output
files.
Additionally counts of all reads are stored in another track (at the
left-most position of ... | {
"repo_name": "smozaffari/WASP",
"path": "CHT/bam2h5.py",
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"... |
"""
usage: import_bam_ref_nonref_counts.py [-h] [--assembly ASSEMBLY]
[--snp_index_track SNP_INDEX_TRACK]
[--snp_track SNP_TRACK]
[--data_type {uint8,uint16}]
[--ha... | {
"repo_name": "PrincetonUniversity/WASP",
"path": "CHT/import_bam_ref_nonref_counts.py",
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"autogenerated": false,
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"""Tools for creating `messages
<http://www.mongodb.org/display/DOCS/Mongo+Wire+Protocol>`_ to be sent to
MongoDB.
.. note:: This module is for internal use and is generally not needed by
application developers.
"""
import logging
import random
from bson import SON
import message
import helpers
from errors impor... | {
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"path": "asyncmongo/asyncjobs.py",
"copies": "3",
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"config_test": ... |
import argparse
import numpy as np
import sys
import gzip
import re
import tables
import chromosome
import chromstat
import coord
import util
SNP_UNDEF = -1
HAP_UNDEF = -1
class SNP(object):
def __init__(self, chrom, pos, name, ref_allele, alt_allele):
self.chrom = chrom
self.pos = pos
... | {
"repo_name": "bmvdgeijn/WASP",
"path": "CHT/extract_haplotype_read_counts.py",
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"size": "22584",
"license": "apache-2.0",
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"autogenerated": false,
"ratio": 3.843430905377808,
"con... |
import argparse
import numpy as np
import sys
import gzip
import tables
import chromosome
import chromstat
import coord
SNP_UNDEF = -1
HAP_UNDEF = -1
class SNP(object):
def __init__(self, chrom, pos, name, ref_allele, alt_allele):
self.chrom = chrom
self.pos = pos
self.name = name
... | {
"repo_name": "cdeboever3/WASP",
"path": "CHT/extract_haplotype_read_counts.py",
"copies": "1",
"size": "21724",
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"autogenerated": false,
"ratio": 3.8307176864750483,
"co... |
"""
usage: extract_haplotype_read_counts.py [-h] [--assembly ASSEMBLY]
[--target_region_size TARGET_REGION_SIZE]
[--sample_file SAMPLE_FILE]
[--homozygous_as_counts {zero,rand_hap,rand_allele}]
... | {
"repo_name": "gmcvicker/CHT",
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"config_t... |
# Copyright 2013 Zynga Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... | {
"repo_name": "zbase/disk_mapper",
"path": "dm_server/lib/flock.py",
"copies": "1",
"size": "3353",
"license": "apache-2.0",
"hash": 5300404385664783000,
"line_mean": 31.8725490196,
"line_max": 76,
"alpha_frac": 0.5407098121,
"autogenerated": false,
"ratio": 4.079075425790754,
"config_test": fa... |
# $Build: OONP_H_R01_6$
# $Date: 05/06/2014 12:10:39$
# $Author: vapoonat$
#
#
import logging
import os
import sys
import importlib
import thread
import threading
import time
from neutron.api.v2 import attributes
from neutron.db import db_base_plugin_v2
from neutron.openstack.common import context
#from neutron.o... | {
"repo_name": "Alcatel-LucentEnterpriseData/ALUe-OONP_H_R01",
"path": "omniswitch/omniswitch_device_plugin.py",
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"autogenerated": false,
"r... |
# $Build: OONP_H_R01_6$
# $Date: 05/06/2014 12:10:39$
# $Author: vapoonat$
#
#
import inspect
import logging
import os
import sys
import importlib
from neutron.agent import securitygroups_rpc as sg_rpc
from neutron.api.rpc.agentnotifiers import dhcp_rpc_agent_api
from neutron.api.rpc.agentnotifiers import l3_rpc_... | {
"repo_name": "Alcatel-LucentEnterpriseData/ALUe-OONP_H_R01",
"path": "omniswitch/omniswitch_network_plugin.py",
"copies": "1",
"size": "27140",
"license": "apache-2.0",
"hash": 3150799072500194000,
"line_mean": 40.8827160494,
"line_max": 126,
"alpha_frac": 0.5806190125,
"autogenerated": false,
"... |
# $Build: OONP_H_R01_6$
# $Date: 05/06/2014 12:10:39$
# $Author: vapoonat$
#
#
import logging
from sqlalchemy.orm import exc
from neutron.common import exceptions as q_exc
from neutron.db import securitygroups_db as sg_db
from neutron.extensions import securitygroup as ext_sg
from neutron import manager
from neu... | {
"repo_name": "Alcatel-LucentEnterpriseData/ALUe-OONP_H_R01",
"path": "omniswitch/omniswitch_neutron_dbutils.py",
"copies": "1",
"size": "2674",
"license": "apache-2.0",
"hash": 9044317341636266000,
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"line_max": 100,
"alpha_frac": 0.6761406133,
"autogenerated": false,
"... |
# $Build: OONP_H_R01_6$
# $Date: 05/06/2014 12:10:39$
# $Author: vapoonat$
#
#
import logging
import os
import sys
import importlib
import traceback
import urllib
import urllib2
import time
import thread
import threading
from neutron.plugins.omniswitch.consumer import AOSAPI, AOSConnection
#from neutron.plugins.... | {
"repo_name": "Alcatel-LucentEnterpriseData/ALUe-OONP_H_R01",
"path": "omniswitch/omniswitch_restful_driver.py",
"copies": "1",
"size": "23098",
"license": "apache-2.0",
"hash": -6183768275189318000,
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"alpha_frac": 0.5599619015,
"autogenerated": false,
... |
# $Build: OONP_H_R01_6$
# $Date: 05/06/2014 12:10:39$
# $Author: vapoonat$
#
#
import logging
import os
import sys
import traceback
import telnetlib
import time
import re
import thread
import threading
from neutron.plugins.omniswitch import omniswitch_constants as omni_const
LOG = logging.getLogger(__name__)
c... | {
"repo_name": "Alcatel-LucentEnterpriseData/ALUe-OONP_H_R01",
"path": "omniswitch/omniswitch_telnet_driver.py",
"copies": "1",
"size": "13351",
"license": "apache-2.0",
"hash": -7785931653876283000,
"line_mean": 36.0861111111,
"line_max": 119,
"alpha_frac": 0.5920904801,
"autogenerated": false,
"... |
from __future__ import print_function
import importlib
#import pprint
#from collections import Counter
from collections import deque
def moduleExists(moduleName):
try:
importlib.import_module(moduleName)
except ImportError:
return False
else:
return True
consoleExists = moduleExists('console')
... | {
"repo_name": "kellymccauley/cavea-rules",
"path": "bin/cavea_lp_progressions.py",
"copies": "1",
"size": "4634",
"license": "apache-2.0",
"hash": 4275046399202570000,
"line_mean": 22.2864321608,
"line_max": 83,
"alpha_frac": 0.5640914976,
"autogenerated": false,
"ratio": 2.8238878732480197,
"c... |
from __future__ import print_function
import importlib
def moduleExists(moduleName):
try:
importlib.import_module(moduleName)
except ImportError:
return False
else:
return True
consoleExists = moduleExists('console')
if consoleExists:
import console
dieTypeDmg = (8, 4, 2, 1)
def main()... | {
"repo_name": "kellymccauley/cavea-rules",
"path": "bin/cavea_dmg_calc.py",
"copies": "1",
"size": "1410",
"license": "apache-2.0",
"hash": -6634687852275554000,
"line_mean": 20.0447761194,
"line_max": 74,
"alpha_frac": 0.6035460993,
"autogenerated": false,
"ratio": 3.1125827814569536,
"config_... |
# Copyright 2015, Abel Lopez
# All rights reserved
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | {
"repo_name": "chrisplo/gleek",
"path": "gleek.py",
"copies": "2",
"size": "7425",
"license": "apache-2.0",
"hash": -7097125786515799000,
"line_mean": 35.9402985075,
"line_max": 78,
"alpha_frac": 0.5573063973,
"autogenerated": false,
"ratio": 4.221148379761228,
"config_test": false,
"has_no_k... |
# Copyright 2015 Red Hat Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writin... | {
"repo_name": "joelsmith/openshift-tools",
"path": "openshift_tools/reporting/zabbixplot.py",
"copies": "13",
"size": "13451",
"license": "apache-2.0",
"hash": 4201776017730459600,
"line_mean": 45.7048611111,
"line_max": 120,
"alpha_frac": 0.6093227269,
"autogenerated": false,
"ratio": 3.95385067... |
import os
import restfuzz.health
tracebacks_blacklist = set((
"IpAddressGenerationFailure: No more IP addresses available on network",
"HTTPBadRequest: Cannot update read-only",
"HTTPBadRequest: Unrecognized attribute(s)",
"HTTPBadRequest: Unable to find",
"HTTPForbidden: Tenant",
"Invalid in... | {
"repo_name": "redhat-cip/restfuzz",
"path": "tools/health_localhost.py",
"copies": "1",
"size": "2662",
"license": "apache-2.0",
"hash": 6028890136272695000,
"line_mean": 33.5714285714,
"line_max": 76,
"alpha_frac": 0.5507137491,
"autogenerated": false,
"ratio": 3.914705882352941,
"config_test... |
"""
Utility to generate Fermat headers and icons from SVG files
"""
import argparse
import os
import shutil
import sys
def create_headers_dirs():
os.makedirs('../high', exist_ok=True)
os.makedirs('../medium', exist_ok=True)
os.makedirs('../small', exist_ok=True)
os.makedirs('../svg', exist_ok=True)
... | {
"repo_name": "simonorono/pyutils",
"path": "fermat.py",
"copies": "1",
"size": "2648",
"license": "apache-2.0",
"hash": 6977704868728653000,
"line_mean": 34.28,
"line_max": 77,
"alpha_frac": 0.6326530612,
"autogenerated": false,
"ratio": 3.375,
"config_test": false,
"has_no_keywords": false,... |
"""
Utility to rename files as a secuence of numbers with trailing zeros
"""
import argparse
import os
from random import shuffle
def get_files(path):
"""Non-hidden files without directories"""
file_list = [x for x in os.listdir(path) if
not os.path.isdir(os.path.join(path, x)) and
... | {
"repo_name": "simonorono/pyutils",
"path": "dirfix.py",
"copies": "1",
"size": "2811",
"license": "apache-2.0",
"hash": -5117099772039800000,
"line_mean": 30.2111111111,
"line_max": 82,
"alpha_frac": 0.6116055536,
"autogenerated": false,
"ratio": 3.643320363164721,
"config_test": false,
"has... |
# Copyright 2019 Arm Limited.
# SPDX-License-Identifier: Apache-2.0
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | {
"repo_name": "ARM-software/bob-build",
"path": "tests/implicit_outs/generate.py",
"copies": "1",
"size": "1573",
"license": "apache-2.0",
"hash": 7897699883625013000,
"line_mean": 22.4776119403,
"line_max": 74,
"alpha_frac": 0.6630642085,
"autogenerated": false,
"ratio": 3.519015659955257,
"co... |
"""Manage shelves of pickled objects using bsddb database files for the
storage.
"""
#------------------------------------------------------------------------
import cPickle
import sys
import sys
absolute_import = (sys.version_info[0] >= 3)
if absolute_import :
# Because this syntaxis is not valid before Python... | {
"repo_name": "DecipherOne/Troglodyte",
"path": "Trog Build Dependencies/Python26/Lib/bsddb/dbshelve.py",
"copies": "1",
"size": "10778",
"license": "mit",
"hash": -160505897045347840,
"line_mean": 28.8559556787,
"line_max": 110,
"alpha_frac": 0.5435145667,
"autogenerated": false,
"ratio": 3.7950... |
"""Manage shelves of pickled objects using bsddb database files for the
storage.
"""
#------------------------------------------------------------------------
import cPickle
try:
from UserDict import DictMixin
except ImportError:
# DictMixin is new in Python 2.3
class DictMixin: pass
try:
# For Pytho... | {
"repo_name": "MalloyPower/parsing-python",
"path": "front-end/testsuite-python-lib/Python-2.3/Lib/bsddb/dbshelve.py",
"copies": "1",
"size": "8793",
"license": "mit",
"hash": 6581846836921082000,
"line_mean": 28.5067114094,
"line_max": 101,
"alpha_frac": 0.534061185,
"autogenerated": false,
"rat... |
import os, sys, string, socket, errno
from cStringIO import StringIO
import cgi
#---------------------------------------------------------------------------
# Set various FastCGI constants
# Maximum number of requests that can be handled
FCGI_MAX_REQS=1
FCGI_MAX_CONNS = 1
# Supported version of the FastCGI ... | {
"repo_name": "brayden2544/Mystuff-final",
"path": "setup/fcgi.py",
"copies": "1",
"size": "14930",
"license": "apache-2.0",
"hash": -661565210181688600,
"line_mean": 33.0091116173,
"line_max": 91,
"alpha_frac": 0.4791694575,
"autogenerated": false,
"ratio": 3.8096453176830822,
"config_test": t... |
# Copyright (c) 2001-2009 Rincon Research Corporation, Richard T. Saunders
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
# 1. Redistributions of source code must retain the above copyri... | {
"repo_name": "henrysher/imagefactory",
"path": "imgfac/picklingtools/xmldumper.py",
"copies": "4",
"size": "30755",
"license": "apache-2.0",
"hash": 4582395243585403400,
"line_mean": 39.897606383,
"line_max": 137,
"alpha_frac": 0.6055925866,
"autogenerated": false,
"ratio": 3.7446730792645804,
... |
import oml4py
import time
import math
omlInst = oml4py.OMLBase("oml4PySimpleExample", "foo", "n1")
omlInst.addmp("SinMP", "label:string angle:int32 value:double")
omlInst.addmp("CosMP", "label:string value:double")
omlInst.start()
for i in range(5):
time.sleep(0.5)
angle = 15 * i
omlInst.inject("SinMP",... | {
"repo_name": "mytestbed/oml4py",
"path": "oml4py-simple-example.py",
"copies": "1",
"size": "1692",
"license": "mit",
"hash": -4689507396885699000,
"line_mean": 35,
"line_max": 79,
"alpha_frac": 0.7405437352,
"autogenerated": false,
"ratio": 3.562105263157895,
"config_test": false,
"has_no_k... |
import os, re, sys, peakparser, discordant, argparse, annotate
class insertionSummary:
def __init__(self):
self.chr = ''
self.start = ''
self.end = ''
self.strand = ''
self.eltStart = ''
self.eltEnd = ''
self.eltFam = ''
self.eltC... | {
"repo_name": "adamewing/discord-retro",
"path": "lib/summarize.py",
"copies": "1",
"size": "7470",
"license": "mit",
"hash": 1324335911542686200,
"line_mean": 37.90625,
"line_max": 129,
"alpha_frac": 0.5694779116,
"autogenerated": false,
"ratio": 3.6385776911836336,
"config_test": true,
"has... |
import os, sys, glob
JAVA_LICENSE = """\
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright (c) 2012, Robin Jarry, ABlogiX. All rights reserved. *
* *
* This file is part of APIWATCH and published under the B... | {
"repo_name": "robin-jarry/apiwatch",
"path": "check_licenses.py",
"copies": "1",
"size": "3872",
"license": "bsd-2-clause",
"hash": 1188230994421003500,
"line_mean": 38.1111111111,
"line_max": 78,
"alpha_frac": 0.3695764463,
"autogenerated": false,
"ratio": 3.78494623655914,
"config_test": fal... |
''' Copyright (c) 2013 Potential Ventures Ltd
Copyright (c) 2013 SolarFlare Communications Inc
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above ... | {
"repo_name": "stuarthodgson/cocotb",
"path": "cocotb/drivers/__init__.py",
"copies": "3",
"size": "11380",
"license": "bsd-3-clause",
"hash": 5076118427944545000,
"line_mean": 32.2748538012,
"line_max": 79,
"alpha_frac": 0.6061511424,
"autogenerated": false,
"ratio": 4.622258326563769,
"config... |
#Unless required by applicable law or agreed to in writing, software
#distributed under the License is distributed on an "AS IS" BASIS,
#WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#See the License for the specific language governing permissions and
#limitations under the License.
#*******... | {
"repo_name": "arashb/tbslas",
"path": "scripts/vis_comp_advdiff.py",
"copies": "1",
"size": "1956",
"license": "bsd-3-clause",
"hash": -8549322518049284000,
"line_mean": 39.75,
"line_max": 84,
"alpha_frac": 0.486196319,
"autogenerated": false,
"ratio": 4.356347438752784,
"config_test": false,
... |
"""
Copyright (c) 2015 David Becvarik
All rights reserved.
This software may be modified and distributed under the terms
of the BSD license. See the LICENSE file for details.
"""
import argparse
import logging
import sys
from csk.container import Container
from csk import setup_logging, version
logger = logging.getL... | {
"repo_name": "containers-tools/container-swiss-knife",
"path": "csk/cli/main.py",
"copies": "2",
"size": "2428",
"license": "mit",
"hash": 8896232807068855000,
"line_mean": 31.3733333333,
"line_max": 109,
"alpha_frac": 0.6523887974,
"autogenerated": false,
"ratio": 3.93517017828201,
"config_te... |
# Copyright (c) 2015. Qubole Inc
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in... | {
"repo_name": "qubole/quboletsdb",
"path": "qdstsdb/command_line.py",
"copies": "1",
"size": "2599",
"license": "apache-2.0",
"hash": 2701396384382624300,
"line_mean": 29.9404761905,
"line_max": 91,
"alpha_frac": 0.6706425548,
"autogenerated": false,
"ratio": 3.85037037037037,
"config_test": tr... |
"""
Happy Slot Machine
This software is a python slot machine that cheats on the users. The numbers
selection function is designed so it is very unlikely to get three identical
numbers and increases the chances for the two firsts numbers to be the same.
"""
from collections import Counter
from random import randint
... | {
"repo_name": "breard-r/happy_slot_machine",
"path": "happy_slot_machine.py",
"copies": "1",
"size": "5402",
"license": "isc",
"hash": -4457193855025634000,
"line_mean": 24.7238095238,
"line_max": 76,
"alpha_frac": 0.6306923362,
"autogenerated": false,
"ratio": 3.467265725288832,
"config_test":... |
# Copyright (c) 2016-present, Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agree... | {
"repo_name": "Yangqing/caffe2",
"path": "caffe2/contrib/aten/gen_op.py",
"copies": "2",
"size": "10069",
"license": "apache-2.0",
"hash": 1085691763903032200,
"line_mean": 35.7481751825,
"line_max": 108,
"alpha_frac": 0.5871486741,
"autogenerated": false,
"ratio": 3.793896006028636,
"config_te... |
from __future__ import print_function
from __future__ import with_statement
import subprocess
import imp
import os
import sys
import socket
import re
protocol = imp.load_source('protocol', '../protocol.py')
nxDSCLog = imp.load_source('nxDSCLog', '../nxDSCLog.py')
LG = nxDSCLog.DSCLog
# [ClassVersion("1.0.0"), Friendl... | {
"repo_name": "MSFTOSSMgmt/WPSDSCLinux",
"path": "Providers/Scripts/2.6x-2.7x/Scripts/nxFirewall.py",
"copies": "2",
"size": "28370",
"license": "mit",
"hash": -2429146672503430000,
"line_mean": 39.878962536,
"line_max": 290,
"alpha_frac": 0.5762072612,
"autogenerated": false,
"ratio": 3.76709600... |
import subprocess
import imp
import os
import sys
import socket
import re
from functools import reduce
protocol = imp.load_source('protocol', '../protocol.py')
nxDSCLog = imp.load_source('nxDSCLog', '../nxDSCLog.py')
LG = nxDSCLog.DSCLog
# [ClassVersion("1.0.0"), FriendlyName("nxFirewallResource")]
# class MSFT_nxFir... | {
"repo_name": "MSFTOSSMgmt/WPSDSCLinux",
"path": "Providers/Scripts/3.x/Scripts/nxFirewall.py",
"copies": "2",
"size": "28061",
"license": "mit",
"hash": -1947552659108030500,
"line_mean": 39.3755395683,
"line_max": 290,
"alpha_frac": 0.5755675136,
"autogenerated": false,
"ratio": 3.7736686390532... |
import subprocess
import imp
import os
import sys
import socket
import re
protocol = imp.load_source('protocol', '../protocol.py')
nxDSCLog = imp.load_source('nxDSCLog', '../nxDSCLog.py')
LG = nxDSCLog.DSCLog
# [ClassVersion("1.0.0"), FriendlyName("nxFirewallResource")]
# class MSFT_nxFirewallResource:OMI_BaseResourc... | {
"repo_name": "MSFTOSSMgmt/WPSDSCLinux",
"path": "Providers/Scripts/2.4x-2.5x/Scripts/nxFirewall.py",
"copies": "2",
"size": "28388",
"license": "mit",
"hash": -5917735707757026000,
"line_mean": 39.670487106,
"line_max": 290,
"alpha_frac": 0.5749612512,
"autogenerated": false,
"ratio": 3.76099629... |
__copyright__ = """Copyright 2014 Adobe Systems Incorporated (http://www.adobe.com/). All Rights Reserved.
"""
__doc__ = """
kernCheck performs several (lengthy) checks on the GPOS table kern
feature in an OpenType font.
It first looks for glyph pairs that collide/overlap. It uses the 'tx'
tool to rasterize glyphs a... | {
"repo_name": "shannpersand/cooper-type",
"path": "_resources/FDK Adobe/Tools/SharedData/FDKScripts/kernCheck.py",
"copies": "1",
"size": "67788",
"license": "cc0-1.0",
"hash": 4329192162524047000,
"line_mean": 33.0301204819,
"line_max": 246,
"alpha_frac": 0.6568714227,
"autogenerated": false,
"r... |
__copyright__ = """Copyright 2015 Adobe Systems Incorporated (http://www.adobe.com/). All Rights Reserved.
"""
__doc__ = """
"""
__usage__ = """
makeInstancesUFO program v1.2 Oct 7 2015
makeInstancesUFO -h
makeInstancesUFO -u
makeInstancesUFO [-d <design space file name>] [-a] [-c] [-n] [-dec] [-i 0,1,..n... | {
"repo_name": "shannpersand/cooper-type",
"path": "_resources/FDK Adobe/Tools/SharedData/FDKScripts/makeInstancesUFO.py",
"copies": "1",
"size": "13032",
"license": "cc0-1.0",
"hash": -6498861482056044000,
"line_mean": 28.2853932584,
"line_max": 120,
"alpha_frac": 0.7031921424,
"autogenerated": fal... |
__copyright__ = """Copyright 2016 Adobe Systems Incorporated (http://www.adobe.com/). All Rights Reserved.
"""
__doc__ = """
"""
__usage__ = """
makeInstances program v1.33 April 12 2016
makeInstances -h
makeInstances -u
makeInstances [-a] [-f <instance file path>] [-m <MM font path>]
[-... | {
"repo_name": "shannpersand/cooper-type",
"path": "_resources/FDK Adobe/Tools/SharedData/FDKScripts/makeInstances.py",
"copies": "1",
"size": "54379",
"license": "cc0-1.0",
"hash": -4001447417870822400,
"line_mean": 31.4650746269,
"line_max": 179,
"alpha_frac": 0.683830155,
"autogenerated": false,
... |
__copyright__ = """Copyright 2017 Adobe Systems Incorporated (http://www.adobe.com/). All Rights Reserved.
"""
__doc__ = """
kernCheck performs several (lengthy) checks on the GPOS table kern
feature in an OpenType font.
It first looks for glyph pairs that collide/overlap. It uses the 'tx'
tool to rasterize glyphs a... | {
"repo_name": "adobe-type-tools/python-scripts",
"path": "vintage/kernCheck.py",
"copies": "1",
"size": "67471",
"license": "mit",
"hash": 2687615735377442300,
"line_mean": 32.9050251256,
"line_max": 246,
"alpha_frac": 0.6604022469,
"autogenerated": false,
"ratio": 3.0032493545802548,
"config_t... |
__copyright__ = """Copyright 2017 Adobe Systems Incorporated (http://www.adobe.com/). All Rights Reserved.
"""
__doc__ = """
"""
__usage__ = """
makeinstances program v1.34
makeinstances -h
makeinstances -u
makeinstances [-a] [-f <instance file path>] [-m <MM font path>]
[-o <instance par... | {
"repo_name": "adobe-type-tools/python-scripts",
"path": "vintage/makeinstances.py",
"copies": "1",
"size": "54207",
"license": "mit",
"hash": 1880907888443735300,
"line_mean": 31.2852888624,
"line_max": 179,
"alpha_frac": 0.6871621746,
"autogenerated": false,
"ratio": 3.043627175743964,
"confi... |
__copyright__ = """
Copyright 2015-2016 Adobe Systems Incorporated (http://www.adobe.com/). All Rights Reserved.
This software is licensed as OpenSource, under the Apache License, Version 2.0. This license is available at: http://opensource.org/licenses/Apache-2.0. */
"""
__doc__ = """
v 2.0 Apr 11 2016
Copies the ... | {
"repo_name": "shannpersand/cooper-type",
"path": "_resources/FDK Adobe/Tools/FontLabMacros/installFontLabMacros.py",
"copies": "2",
"size": "2979",
"license": "cc0-1.0",
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... |
#!/bin/env python
"""
Create a whitelist for HGAP assembly based on vector screening blacklist.
Based on code from:
https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/HGAP-Whitelisting-Tutorial
"""
import argparse
import csv
import h5py
import os
import re
def get_hole_number_by_file(input_filename)... | {
"repo_name": "EichlerLab/pacbio-protocols",
"path": "smrtanalysis-2.3.0/whitelist.py",
"copies": "2",
"size": "2971",
"license": "mit",
"hash": -34673337240525580,
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"line_max": 131,
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"autogenerated": false,
"ratio": 3.4870892018779345,
"con... |
'''
Created on Oct 28, 2012
@author: Shunping Huang
'''
import csv
import gc
import argparse as ap
import gzip
import logging
from time import localtime,strftime
import dbutils as dbu
from modtools.variants import parseVariant, INS, DEL
from modtools.utils import readableFile, writableFile, validChromList
from modto... | {
"repo_name": "andrewparkermorgan/lapels",
"path": "modtools/db/db2mod.py",
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#!/bin/env python
#
# Create RPMs, move to dist area, regenerate repos.
# Should be run from the svn checkout root.
# User must have GPG keys and .rpmmacros for signing.
# Platform must be specified.
import subprocess
import sys
import logging
import os
import re
import shutil
PKGNAME="autopyfactory"
REPOROOT... | {
"repo_name": "PanDAWMS/autopyfactory",
"path": "misc/publish-rpms.py",
"copies": "2",
"size": "5020",
"license": "apache-2.0",
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"alpha_frac": 0.5141434263,
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"ratio": 3.86748844375963,
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#!/bin/env python
"""
dbview -- view an SQL DB thru RDF glasses.
*** NOTE WELL ***
As of May 2006, active development has moved to
http://dig.csail.mit.edu/2006/dbview/dbview.py
an implementation of...
[SWDB]
Relational Databases on the Semantic Web
Id: RDB-RDF.html,v 1.17 2002/03/06 20:43:13 timbl
http:/... | {
"repo_name": "vdimarco/Open-Data-Linker",
"path": "ETL/rdb2rdf_http.py",
"copies": "1",
"size": "25742",
"license": "apache-2.0",
"hash": 4590000671532910000,
"line_mean": 29.2136150235,
"line_max": 499,
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"autogenerated": false,
"ratio": 3.4281528832068187,
"config_t... |
#!/bin/env python
"""
Demonstrate gathering of interface stats and generation of plot
"""
import sys
import time
import snmp_helper
import pygal
def delta(intList):
retList = []
for i in range(len(intList)-1):
retList.append(intList[i+1]-intList[i])
return retList
def addNone(alist, nmod):
r... | {
"repo_name": "patrebert/pynet_cert",
"path": "class3/ex2.py",
"copies": "1",
"size": "2903",
"license": "apache-2.0",
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"autogenerated": false,
"ratio": 2.653564899451554,
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... |
"""
distances.py
Functions for determining distances and overlaps:
- closestDistanceToRegion: distance from a reference position to a
coordinate or region
- regions_overlap: determine if two regions have any overlap
- GetNearestTranscriptToPeak: compare two transcripts agai... | {
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"path": "rnachipintegrator/distances.py",
"copies": "1",
"size": "11560",
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#!/bin/env python
__doc__ = """
ConvertFontToCID.py. v 1.9 April 16 2016
Convert a Type 1 font to CID, given multiple hint dict defs in the
"fontinfo" file. See AC.py help, with the "-hfd" option, or the MakeOTF
user guide for details on this format. The output file produced by
convertFontToCID() is a CID Type 1 font... | {
"repo_name": "shannpersand/cooper-type",
"path": "_resources/FDK Adobe/Tools/SharedData/FDKScripts/ConvertFontToCID.py",
"copies": "1",
"size": "30370",
"license": "cc0-1.0",
"hash": -6484969093381529000,
"line_mean": 32.7069922309,
"line_max": 219,
"alpha_frac": 0.6751070135,
"autogenerated": fal... |
#! /bin/env python
#docs:
#https://developers.google.com/transit/gtfs/examples/gtfs-feed
#agency
#agency_id, agency_name,agency_url,agency_timezone,agency_phone,agency_lang
files = {}
files["agency.txt"] = {
"fields":['agency_id', 'agency_name','agency_url','agency_timezone','agency_phone','agency_lang'],
"data":... | {
"repo_name": "sirmmo/TPER2GTFS",
"path": "transform.py",
"copies": "1",
"size": "7947",
"license": "apache-2.0",
"hash": 2592642132867604500,
"line_mean": 29.6833976834,
"line_max": 156,
"alpha_frac": 0.6276582358,
"autogenerated": false,
"ratio": 2.523658304223563,
"config_test": false,
"ha... |
"""
Download and pre-process the POS-tagged corpora that we will use.
"""
__author__ = 'rtownsend'
import nltk
import logging
from argparse import ArgumentParser
from tag import Tag
import cPickle as pickle
from util import download_file
TWEEBO_OCT27_DL = "https://raw.githubusercontent.com/brendano/ark-tweet-nlp/mast... | {
"repo_name": "Sentimentron/Dracula",
"path": "corpus.py",
"copies": "1",
"size": "5743",
"license": "bsd-3-clause",
"hash": 9038564811412729000,
"line_mean": 26.3476190476,
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"autogenerated": false,
"ratio": 3.49330900243309,
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"... |
# dtools: simple tools for manipulating and plotting data
#
# Copyright (c) 2011 Erik Erlandson
#
# Author: Erik Erlandson <erikerlandson@yahoo.com>
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the Lic... | {
"repo_name": "erikerlandson/dtools",
"path": "bin/dtools.py",
"copies": "1",
"size": "4886",
"license": "apache-2.0",
"hash": 2413333617716583000,
"line_mean": 26.7613636364,
"line_max": 92,
"alpha_frac": 0.5221039705,
"autogenerated": false,
"ratio": 2.984728161270617,
"config_test": false,
... |
#!/bin/env python
"""
Ensemble verification
=====================
In this tutorial we perform a verification of a probabilistic extrapolation nowcast
using MeteoSwiss radar data.
"""
from datetime import datetime
import matplotlib.pyplot as plt
import numpy as np
from pprint import pprint
from pysteps import io, no... | {
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"path": "examples/plot_ensemble_verification.py",
"copies": "1",
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"alpha_frac": 0.6312081114,
"autogenerated": false,
"ratio": 3.394982497082847,
"... |
#! /bin/env python
"""
Examples
--------
Create a grid that consists of 2x3 nodes using 'xy' and 'ij' indexing.
**ij-indexing**
Create a grid of length 2 in the i direction, and 3 in the j direction.
>>> g = UniformRectilinear ((2,3), (1,2), (.5, 0), indexing='ij', units=('m', 'km'))
>>> g.get_x()
array([ 0., 2., ... | {
"repo_name": "csdms/coupling",
"path": "pymt/grids/raster.py",
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"has... |
#! /bin/env python
"""
Examples
========
Point-to-point Mapping
----------------------
>>> import numpy as np
>>> from pymt.grids.map import RectilinearMap as Rectilinear
>>> src = Rectilinear([0, 1, 2], [0, 2])
>>> dst = Rectilinear([.5, 1.5, 2.5], [.25, 1.25])
>>> src.get_x()
array([ 0., 2., 0., 2., 0., 2.])... | {
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"... |
#! /bin/env python
"""
Examples
========
**Rectilinear**
Create a rectilinear grid that is 2x3::
(0) --- (1) --- (2)
| | |
| | |
| [0] | [1] |
| | |
| | |
(3) --- (4) --- (5)
Numbers in parens are node IDs, and numbers in square br... | {
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"has_no_key... |
#!/bin/env python
#
# Example worker exec
#
# Usage: exp_worker_exec.py
#
# zlmb-worker -e tcp://127.0.0.1:5560 -c exp_worker_exec.py
import sys
import os
import datetime
# Init zlmb
zlmb_frame = ''
zlmb_frame_length = ''
zlmb_length = ''
zlmb_buffer = ''
# Read STDIN (Get zlmb buffer)
if sys.stdin.isatty() == False... | {
"repo_name": "kjdev/zlmb",
"path": "src/exp_worker_exec.py",
"copies": "1",
"size": "1094",
"license": "mit",
"hash": -6612127428534998000,
"line_mean": 21.3265306122,
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"autogenerated": false,
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"has_n... |
#!/bin/env python
"""ExtractCurvatures
Create a training file from a csv database
-d file.csv specifies the file
-m (optional) mrn to process
-o features.csv specifies the output file
"""
import sys
import getopt
import csv
import os
def process(db, mrn, study, series):
if os.getenv("CTC_IMG_DIR") == None:
... | {
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"path": "Scripts/ExtractCurvatures.py",
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#!/bin/env python
#
# extract python code from <pre><code> block
#
from test.test_support import captured_stdout, captured_output, \
captured_stderr, captured_stdin
import StringIO
import sys
import code
import os.path
import pytmlargs
import hashlib
from bs4 import BeautifulSoup
import matplotlib
matplot... | {
"repo_name": "barryrowlingson/pytml",
"path": "pytml/extract_python.py",
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"size": "8256",
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"alpha_frac": 0.5529312016,
"autogenerated": false,
"ratio": 3.9692307692307693,
"config_test": fa... |
#!/bin/env python
# extracts information about omim inheritance modes from genemap2.txt
import re
from os.path import expanduser
home = expanduser('~')
inheritance = {}
inheritance['Autosomal recessive']='AR'
inheritance['Autosomal dominant'] = 'AD'
inheritance['X-linked recessive'] = 'XLR'
inheritance['X-linked do... | {
"repo_name": "naumenko-sa/cre",
"path": "cre.omim.inheritance.py",
"copies": "1",
"size": "1353",
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"... |
#!/bin/env python
"""
Extrapolation nowcast
=====================
This tutorial shows how to compute and plot an extrapolation nowcast using
Finnish radar data.
"""
from datetime import datetime
import matplotlib.pyplot as plt
import numpy as np
from pprint import pprint
from pysteps import io, motion, nowcasts, rc... | {
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"path": "examples/plot_extrapolation_nowcast.py",
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... |
#!/bin/env python
# file color_cube_actor.py
from textwrap import dedent
from OpenGL.GL import * # @UnusedWildImport # this comment squelches an IDE warning
from OpenGL.GL.shaders import compileShader, compileProgram
from openvr.glframework import shader_string
"""
Color cube for use in "hello world" openvr apps
... | {
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"path": "src/openvr/color_cube_actor.py",
"copies": "1",
"size": "3734",
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"ratio": 3.3102836879432624,
"config_... |
#!/bin/env python
# file glfwapp.py
from OpenGL.GL import * # @UnusedWildImport # this comment squelches an IDE warning
from OpenGL.GLUT import * # @UnusedWildImport
"""
Toy glut application for use with "hello world" examples demonstrating pyopenvr
"""
class GlutApp(object):
"GlutApp uses freeglut library to... | {
"repo_name": "cmbruns/pyopenvr",
"path": "src/openvr/glframework/glut_app.py",
"copies": "1",
"size": "2508",
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"ratio": 3.8883720930232557,
"config_test... |
#!/bin/env python
# file glfwapp.py
import glfw
from OpenGL.GL import glFlush
"""
Toy glfw application for use with "hello world" examples demonstrating pyopenvr
"""
class GlfwBaseApp(object):
"Base version renders to desktop"
def __init__(self, renderer, title="GlfwBaseApp"):
"Creates an OpenGL ... | {
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"path": "src/openvr/glframework/glfw_app.py",
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"co... |
#!/bin/env python
# file hello_glfw.py
import numpy
import time
import collections
from numpy.linalg import inv, norm
import itertools
from textwrap import dedent
from ctypes import cast, c_float, c_void_p, sizeof
from OpenGL.GL import * # @UnusedWildImport # this comment squelches an IDE warning
# from OpenGL.GL i... | {
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"path": "src/samples/objmesh/test_obj.py",
"copies": "1",
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"ratio": 3.7655635269613517,
"co... |
#!/bin/env python
# file hello_wx.py
import sys
import wx
from wx import glcanvas
"""
Minimal wxPython programming example which colored OpenGL cube scene that can be closed by pressing ESCAPE.
"""
class WxApp(wx.App):
"HelloApp uses wxPython library to create an opengl context, listen to keyboard events, and cl... | {
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"path": "src/openvr/glframework/wx_app.py",
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"ratio": 3.097378277153558,
"conf... |
#!/bin/env python
# file openvr_gl_renderer.py
from OpenGL.GL import * # @UnusedWildImport # this comment squelches an IDE warning
import numpy
import openvr
"""
Renders OpenGL scenes to virtual reality headsets using OpenVR API
"""
# TODO: matrixForOpenVrMatrix() is not general, it is specific the perspective a... | {
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"path": "src/openvr/gl_renderer.py",
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"config_te... |
#!/bin/env python
# file qt_pyside_app.py
import sys
from PyQt5.QtCore import Qt, QTimer
from PyQt5.QtWidgets import QApplication, QMainWindow
from PyQt5.QtOpenGL import QGLWidget, QGLFormat
"""
Toy PySide application for use with "hello world" examples demonstrating pyopenvr
"""
class MyGlWidget(QGLWidget):
... | {
"repo_name": "cmbruns/pyopenvr",
"path": "src/openvr/glframework/qt5_app.py",
"copies": "1",
"size": "3157",
"license": "bsd-3-clause",
"hash": 7611893353986233000,
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"line_max": 100,
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"autogenerated": false,
"ratio": 3.776315789473684,
"conf... |
#!/bin/env python
# file qt_pyside_app.py
import sys
from PySide2.QtCore import Qt, QTimer
from PySide2.QtWidgets import QApplication, QMainWindow
from PySide2.QtOpenGL import QGLWidget, QGLFormat
"""
Toy PySide application for use with "hello world" examples demonstrating pyopenvr
"""
class MyGlWidget(QGLWidget)... | {
"repo_name": "cmbruns/pyopenvr",
"path": "src/openvr/glframework/qt_pyside_app.py",
"copies": "1",
"size": "3174",
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"hash": 7662947890497135000,
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"autogenerated": false,
"ratio": 3.7695961995249405,... |
#!/bin/env python
# file sdl_app.py
import ctypes
from OpenGL.GL import glFlush # @UnusedWildImport # this comment squelches an IDE warning
from sdl2 import * # @UnusedWildImport
"""
Minimal sdl programming example which colored OpenGL cube scene that can be closed by pressing ESCAPE.
"""
class SdlAppQuit(Except... | {
"repo_name": "cmbruns/pyopenvr",
"path": "src/openvr/glframework/sdl_app.py",
"copies": "1",
"size": "3794",
"license": "bsd-3-clause",
"hash": -5781614870791065000,
"line_mean": 29.5967741935,
"line_max": 102,
"alpha_frac": 0.7034791776,
"autogenerated": false,
"ratio": 3.01829753381066,
"con... |
#!/bin/env python
# file tracked_devices_actor.py
import time
from ctypes import cast, c_float, c_void_p, sizeof
import numpy
from OpenGL import GL
from OpenGL.GL.shaders import compileShader, compileProgram
from OpenGL.arrays import vbo
from OpenGL.GL.EXT.texture_filter_anisotropic import GL_TEXTURE_MAX_ANISOTROPY_... | {
"repo_name": "cmbruns/pyopenvr",
"path": "src/openvr/tracked_devices_actor.py",
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"size": "9469",
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"hash": 3587258364616792000,
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"line_max": 122,
"alpha_frac": 0.6121026508,
"autogenerated": false,
"ratio": 3.563793752352277,
"c... |
#!/bin/env python
"""FilterFeatures
filter a csv feature training file for features within a distance threshold to polyp
-i specifies the file (default: features.csv)
-o specifies the output file (default: filtered.csv)
-t specifies the threshold
"""
import sys
import getopt
import csv
import string
def main():
... | {
"repo_name": "clwyatt/CTC",
"path": "Scripts/FilterFeatures.py",
"copies": "1",
"size": "1261",
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"autogenerated": false,
"ratio": 3.7867867867867866,
"config_test": f... |
#! /bin/env python
#
# Finalize un-finalized biobank orders with an input file that gives finalized times
#
import argparse
import csv
import logging
import sys
from rdr_service.dao import database_factory
from rdr_service.model.biobank_order import BiobankOrder, BiobankOrderHistory, BiobankOrderedSampleHistory
from ... | {
"repo_name": "all-of-us/raw-data-repository",
"path": "rdr_service/tools/tool_libs/finalize_orders.py",
"copies": "1",
"size": "6030",
"license": "bsd-3-clause",
"hash": 1165521412716833500,
"line_mean": 43.3382352941,
"line_max": 118,
"alpha_frac": 0.6484245439,
"autogenerated": false,
"ratio":... |
#! /bin/env python
#
# Find COPE survey response counts and breakdowns for each question
#
import json
from rdr_service import config
from rdr_service.tools.tool_libs.tool_base import cli_run, ToolBase
# Tool_cmd and tool_desc name are required.
# Remember to add/update bash completion in 'tool_lib/tools.bash'
tool_... | {
"repo_name": "all-of-us/raw-data-repository",
"path": "rdr_service/tools/tool_libs/cope_answers.py",
"copies": "1",
"size": "3779",
"license": "bsd-3-clause",
"hash": 2175280388233202400,
"line_mean": 39.2021276596,
"line_max": 117,
"alpha_frac": 0.6448795978,
"autogenerated": false,
"ratio": 3.... |
#!/bin/env python
"""
For a given BED file of SUNs with the base change in the name column (e.g.,
"A>G") and the unique id of each mismatch in the score column, calculate the
total number of each mismatch type including transitions, transversions,
insertions, and deletions.
"""
from argparse import ArgumentParser
from ... | {
"repo_name": "huddlej/suns",
"path": "parse_mismatch_types.py",
"copies": "1",
"size": "1795",
"license": "mit",
"hash": 6012694088117234000,
"line_mean": 32.2407407407,
"line_max": 143,
"alpha_frac": 0.6573816156,
"autogenerated": false,
"ratio": 3.81104033970276,
"config_test": false,
"has... |
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