text stringlengths 0 1.05M | meta dict |
|---|---|
import os
from functools import partial
import pytest
from elasticapm.conf import constants
from elasticapm.utils import (
get_name_from_func,
get_url_dict,
read_pem_file,
sanitize_url,
starmatch_to_regex,
url_to_destination,
)
from elasticapm.utils.deprecation import deprecated
try:
fro... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/utils/tests.py",
"copies": "1",
"size": "7557",
"license": "bsd-3-clause",
"hash": 8212375835859125000,
"line_mean": 30.356846473,
"line_max": 110,
"alpha_frac": 0.5785364563,
"autogenerated": false,
"ratio": 3.5346117867165576,
"config... |
import os
import re
CGROUP_PATH = "/proc/self/cgroup"
SYSTEMD_SCOPE_SUFFIX = ".scope"
kubepods_regexp = re.compile(
r"(?:^/kubepods[\S]*/pod([^/]+)$)|(?:^/kubepods\.slice/(kubepods-[^/]+\.slice/)?kubepods[^/]*-pod([^/]+)\.slice$)"
)
container_id_regexp = re.compile(
"^(?:[0-9a-f]{64}|[0-9a-f]{8}-[0-9a-f]{4... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/utils/cgroup.py",
"copies": "1",
"size": "4432",
"license": "bsd-3-clause",
"hash": 2810033636795195000,
"line_mean": 40.4205607477,
"line_max": 123,
"alpha_frac": 0.6617779783,
"autogenerated": false,
"ratio": 3.5342902711323765,
... |
import os
import mock
import pytest
import elasticapm
from elasticapm.conf.constants import ERROR, KEYWORD_MAX_LENGTH
from elasticapm.utils import compat, encoding
from tests.utils.stacks import get_me_more_test_frames
def test_explicit_message_on_exception_event(elasticapm_client):
try:
raise ValueErr... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/client/exception_tests.py",
"copies": "1",
"size": "15734",
"license": "bsd-3-clause",
"hash": -163819178885008000,
"line_mean": 39.6563307494,
"line_max": 115,
"alpha_frac": 0.6809457226,
"autogenerated": false,
"ratio": 3.67016561698157... |
import os
import pytest
from elasticapm.conf.constants import TRANSACTION
from elasticapm.instrumentation.packages.pymssql import get_host_port
from elasticapm.utils import default_ports
pymssql = pytest.importorskip("pymssql")
pytestmark = [pytest.mark.pymssql]
if "MSSQL_HOST" not in os.environ:
pytestmark.... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/pymssql_tests.py",
"copies": "1",
"size": "5395",
"license": "bsd-3-clause",
"hash": 4334765124516448000,
"line_mean": 38.962962963,
"line_max": 104,
"alpha_frac": 0.6637627433,
"autogenerated": false,
"ratio": 3.870157819... |
import os
import pytest
from elasticapm.conf.constants import TRANSACTION
from elasticapm.traces import capture_span
pylibmc = pytest.importorskip("pylibmc")
pytestmark = [pytest.mark.pylibmc]
if "MEMCACHED_HOST" not in os.environ:
pytestmark.append(pytest.mark.skip("Skipping pylibmc tests, no MEMCACHED_HOST ... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/pylibmc_tests.py",
"copies": "1",
"size": "3690",
"license": "bsd-3-clause",
"hash": 7886026676889988000,
"line_mean": 40,
"line_max": 109,
"alpha_frac": 0.6956639566,
"autogenerated": false,
"ratio": 3.731041456016178,
... |
import pytest # isort:skip
aiohttp = pytest.importorskip("aiohttp") # isort:skip
import mock
from multidict import MultiDict
import elasticapm
from elasticapm import async_capture_span
from elasticapm.conf import constants
from elasticapm.contrib.aiohttp import ElasticAPM
from elasticapm.contrib.aiohttp.middlewar... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/contrib/asyncio/aiohttp_web_tests.py",
"copies": "1",
"size": "8113",
"license": "bsd-3-clause",
"hash": -7722702032495204000,
"line_mean": 39.9747474747,
"line_max": 113,
"alpha_frac": 0.7104646863,
"autogenerated": false,
"ratio": 3.643... |
import pytest # isort:skip
flask = pytest.importorskip("flask") # isort:skip
celery = pytest.importorskip("celery") # isort:skip
import mock
from elasticapm.conf.constants import ERROR, TRANSACTION
pytestmark = [pytest.mark.celery, pytest.mark.flask]
def test_task_failure(flask_celery):
apm_client = flask... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/contrib/celery/flask_tests.py",
"copies": "1",
"size": "3202",
"license": "bsd-3-clause",
"hash": -3086964921144654300,
"line_mean": 39.025,
"line_max": 84,
"alpha_frac": 0.7292317302,
"autogenerated": false,
"ratio": 4.0025,
"config_te... |
import pytest # isort:skip
opentracing = pytest.importorskip("opentracing") # isort:skip
import sys
import mock
from opentracing import Format
import elasticapm
from elasticapm.conf import constants
from elasticapm.contrib.opentracing import Tracer
from elasticapm.contrib.opentracing.span import OTSpanContext
fr... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/contrib/opentracing/tests.py",
"copies": "1",
"size": "12355",
"license": "bsd-3-clause",
"hash": -4322840258052077000,
"line_mean": 38.5993589744,
"line_max": 115,
"alpha_frac": 0.6794010522,
"autogenerated": false,
"ratio": 3.4224376731... |
import pytest # isort:skip
pytest.importorskip("cassandra") # isort:skip
import os
import socket
from cassandra.cluster import Cluster
from cassandra.query import SimpleStatement
from elasticapm.conf.constants import TRANSACTION
from elasticapm.instrumentation.packages.dbapi2 import extract_signature
pytestmark... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/cassandra_tests.py",
"copies": "1",
"size": "6423",
"license": "bsd-3-clause",
"hash": 8677407193698500000,
"line_mean": 38.1646341463,
"line_max": 121,
"alpha_frac": 0.7059006695,
"autogenerated": false,
"ratio": 3.911693... |
import pytest # isort:skip
pytest.importorskip("elasticsearch") # isort:skip
import json
import os
from elasticsearch import VERSION as ES_VERSION
from elasticsearch import Elasticsearch
from elasticsearch.serializer import JSONSerializer
from elasticapm.conf.constants import TRANSACTION
from elasticapm.utils im... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/elasticsearch_tests.py",
"copies": "1",
"size": "22468",
"license": "bsd-3-clause",
"hash": -5278299923598440000,
"line_mean": 41.3924528302,
"line_max": 120,
"alpha_frac": 0.6584920776,
"autogenerated": false,
"ratio": 3.... |
import pytest # isort:skip
pytest.importorskip("flask") # isort:skip
import logging
import os
import mock
from elasticapm.conf import constants
from elasticapm.conf.constants import ERROR, TRANSACTION
from elasticapm.contrib.flask import ElasticAPM
from elasticapm.utils import compat
from elasticapm.utils.disttr... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/contrib/flask/flask_tests.py",
"copies": "1",
"size": "19038",
"license": "bsd-3-clause",
"hash": -6255384880563079000,
"line_mean": 39.6794871795,
"line_max": 118,
"alpha_frac": 0.6715516336,
"autogenerated": false,
"ratio": 3.4944933920... |
import pytest # isort:skip
pytest.importorskip("httpx") # isort:skip
import httpx
from httpx import InvalidURL
from elasticapm.conf import constants
from elasticapm.conf.constants import TRANSACTION
from elasticapm.traces import capture_span
from elasticapm.utils import compat
from elasticapm.utils.disttracing im... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/httpx_tests.py",
"copies": "1",
"size": "7315",
"license": "bsd-3-clause",
"hash": -4874697416994192000,
"line_mean": 42.5416666667,
"line_max": 111,
"alpha_frac": 0.7197539303,
"autogenerated": false,
"ratio": 3.770618556... |
import pytest # isort:skip
pytest.importorskip("twisted") # isort:skip
from twisted.python.failure import Failure
from elasticapm.conf.constants import ERROR
from elasticapm.contrib.twisted import LogObserver
pytestmark = pytest.mark.twisted
def test_twisted_log_observer(elasticapm_client):
observer = LogO... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/contrib/twisted/tests.py",
"copies": "1",
"size": "2274",
"license": "bsd-3-clause",
"hash": -3970581154759454000,
"line_mean": 40.3454545455,
"line_max": 81,
"alpha_frac": 0.7576956904,
"autogenerated": false,
"ratio": 4.274436090225564,... |
import sqlite3
from elasticapm.conf.constants import TRANSACTION
def test_connect(instrument, elasticapm_client):
elasticapm_client.begin_transaction("transaction.test")
sqlite3.connect(":memory:")
elasticapm_client.end_transaction("MyView")
transactions = elasticapm_client.events[TRANSACTION]
... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/sqlite_tests.py",
"copies": "1",
"size": "5786",
"license": "bsd-3-clause",
"hash": -2460819182310716000,
"line_mean": 39.1805555556,
"line_max": 94,
"alpha_frac": 0.6851019703,
"autogenerated": false,
"ratio": 3.685350318... |
import sys
from elasticapm.utils.module_import import import_string
_cls_register = {
"elasticapm.instrumentation.packages.botocore.BotocoreInstrumentation",
"elasticapm.instrumentation.packages.httpx.HttpxClientInstrumentation",
"elasticapm.instrumentation.packages.jinja2.Jinja2Instrumentation",
"el... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/instrumentation/register.py",
"copies": "1",
"size": "5469",
"license": "bsd-3-clause",
"hash": -279583116311008260,
"line_mean": 54.2424242424,
"line_max": 103,
"alpha_frac": 0.7915523862,
"autogenerated": false,
"ratio": 4.15893536... |
from elasticapm.conf import constants
from elasticapm.instrumentation.packages.base import AbstractInstrumentedModule
from elasticapm.traces import DroppedSpan, capture_span, execution_context
from elasticapm.utils import compat, default_ports, sanitize_url, url_to_destination
from elasticapm.utils.disttracing import... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/instrumentation/packages/urllib.py",
"copies": "1",
"size": "5436",
"license": "bsd-3-clause",
"hash": 6757879864624958000,
"line_mean": 43.1951219512,
"line_max": 103,
"alpha_frac": 0.6865342163,
"autogenerated": false,
"ratio": 4.1... |
from elasticapm.instrumentation.packages.dbapi2 import (
ConnectionProxy,
CursorProxy,
DbApi2Instrumentation,
extract_signature,
)
from elasticapm.utils import default_ports
class MySQLCursorProxy(CursorProxy):
provider_name = "mysql"
def extract_signature(self, sql):
return extract... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/instrumentation/packages/mysql_connector.py",
"copies": "1",
"size": "2569",
"license": "bsd-3-clause",
"hash": 7399017138885704000,
"line_mean": 39.7777777778,
"line_max": 96,
"alpha_frac": 0.737251849,
"autogenerated": false,
"rati... |
from __future__ import absolute_import
import contextvars
from elasticapm.context.base import BaseContext
class ContextVarsContext(BaseContext):
elasticapm_transaction_var = contextvars.ContextVar("elasticapm_transaction_var")
elasticapm_span_var = contextvars.ContextVar("elasticapm_span_var")
def ge... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/context/contextvars.py",
"copies": "1",
"size": "2529",
"license": "bsd-3-clause",
"hash": 2737223315485008400,
"line_mean": 37.9076923077,
"line_max": 85,
"alpha_frac": 0.7330960854,
"autogenerated": false,
"ratio": 4.35283993115318... |
from twisted.logger import ILogObserver
from zope.interface import implementer
from elasticapm.base import Client
@implementer(ILogObserver)
class LogObserver(object):
"""
A twisted log observer for Elastic APM.
Eg.:
from elasticapm.base import Client
from twisted.logger import Logger
cli... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/contrib/twisted/__init__.py",
"copies": "1",
"size": "2462",
"license": "bsd-3-clause",
"hash": -2551512516198542000,
"line_mean": 36.8769230769,
"line_max": 112,
"alpha_frac": 0.7250203087,
"autogenerated": false,
"ratio": 4.3730017... |
from werkzeug.exceptions import ClientDisconnected
from elasticapm.conf import constants
from elasticapm.utils import compat, get_url_dict
from elasticapm.utils.wsgi import get_environ, get_headers
def get_data_from_request(request, config, event_type):
result = {
"env": dict(get_environ(request.enviro... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/contrib/flask/utils.py",
"copies": "1",
"size": "3683",
"license": "bsd-3-clause",
"hash": -2447981097690520600,
"line_mean": 42.8452380952,
"line_max": 105,
"alpha_frac": 0.6749932121,
"autogenerated": false,
"ratio": 4.282558139534... |
import logging
from django.template.base import Node
from elasticapm.utils.stacks import get_frame_info
try:
from django.template.base import Template
except ImportError:
class Template(object):
pass
def iterate_with_template_sources(
frames,
with_locals=True,
library_frame_context_l... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/contrib/django/utils.py",
"copies": "1",
"size": "3925",
"license": "bsd-3-clause",
"hash": 43453454699107096,
"line_mean": 41.2043010753,
"line_max": 111,
"alpha_frac": 0.6489171975,
"autogenerated": false,
"ratio": 4.49599083619702... |
import os
import mock
import pytest
import urllib3.poolmanager
from urllib3.exceptions import MaxRetryError, TimeoutError
from elasticapm.conf import constants
from elasticapm.transport.exceptions import TransportException
from elasticapm.transport.http import Transport
from elasticapm.utils import compat
try:
... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/transports/test_urllib3.py",
"copies": "1",
"size": "14584",
"license": "bsd-3-clause",
"hash": -1026546961873067000,
"line_mean": 40.908045977,
"line_max": 116,
"alpha_frac": 0.6876714207,
"autogenerated": false,
"ratio": 3.6940222897669... |
import pytest
from elasticapm.conf.constants import TRANSACTION
from elasticapm.traces import capture_span
graphene = pytest.importorskip("graphene")
graphql = pytest.importorskip("graphql")
pytestmark = pytest.mark.graphene
class Success(graphene.ObjectType):
yeah = graphene.String(required=True)
class Er... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/instrumentation/graphql_tests.py",
"copies": "1",
"size": "4896",
"license": "bsd-3-clause",
"hash": 6470997379109999000,
"line_mean": 33.7234042553,
"line_max": 118,
"alpha_frac": 0.7087418301,
"autogenerated": false,
"ratio": 3.85208497... |
import sys
import elasticapm.context
from elasticapm.context.threadlocal import ThreadLocalContext
def test_execution_context_backing():
execution_context = elasticapm.context.init_execution_context()
if sys.version_info[0] == 3 and sys.version_info[1] >= 7:
from elasticapm.context.contextvars imp... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "tests/context/test_context.py",
"copies": "1",
"size": "2468",
"license": "bsd-3-clause",
"hash": -3873893397538811400,
"line_mean": 43.8727272727,
"line_max": 85,
"alpha_frac": 0.7690437601,
"autogenerated": false,
"ratio": 4.391459074733096,
... |
import threading
from elasticapm.context.base import BaseContext
class ThreadLocalContext(BaseContext):
thread_local = threading.local()
thread_local.transaction = None
thread_local.span = None
def get_transaction(self, clear=False):
"""
Get the transaction registered for the curre... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/context/threadlocal.py",
"copies": "1",
"size": "2434",
"license": "bsd-3-clause",
"hash": 3186549276487586300,
"line_mean": 37.03125,
"line_max": 81,
"alpha_frac": 0.7337715694,
"autogenerated": false,
"ratio": 4.46605504587156,
"... |
"""
This module implements WSGI related helpers adapted from ``werkzeug.wsgi``
:copyright: (c) 2010 by the Werkzeug Team, see AUTHORS for more details.
:license: BSD, see LICENSE for more details.
"""
from elasticapm.utils import compat
try:
from urllib import quote
except ImportError:
from urllib.parse impo... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/utils/wsgi.py",
"copies": "1",
"size": "5031",
"license": "bsd-3-clause",
"hash": 3097882667887082000,
"line_mean": 38.3046875,
"line_max": 105,
"alpha_frac": 0.6676605049,
"autogenerated": false,
"ratio": 3.958300550747443,
"confi... |
"""Provides classes to instrument dbapi2 providers
https://www.python.org/dev/peps/pep-0249/
"""
import re
from elasticapm.instrumentation.packages.base import AbstractInstrumentedModule
from elasticapm.traces import capture_span
from elasticapm.utils import compat, wrapt
from elasticapm.utils.encoding import force... | {
"repo_name": "beniwohli/apm-agent-python",
"path": "elasticapm/instrumentation/packages/dbapi2.py",
"copies": "1",
"size": "9948",
"license": "bsd-3-clause",
"hash": 5266316686702867000,
"line_mean": 35.0434782609,
"line_max": 119,
"alpha_frac": 0.6056493768,
"autogenerated": false,
"ratio": 4.1... |
"""Code for ResNet.
Adapted from
https://github.com/pytorch/vision/blob/master/torchvision/models/resnet.py
"""
import math
import torch.nn as nn
import torch.utils.model_zoo as model_zoo
from torchvision.models.resnet import BasicBlock
from torchvision.models.vgg import cfg, model_urls, VGG
class ResNet(nn.Module... | {
"repo_name": "google/graph_distillation",
"path": "third_party/pytorch/get_cnn.py",
"copies": "1",
"size": "3968",
"license": "apache-2.0",
"hash": -4396732771664096000,
"line_mean": 30.4920634921,
"line_max": 79,
"alpha_frac": 0.6605342742,
"autogenerated": false,
"ratio": 3.220779220779221,
... |
import lasagne
import quantization as q
import quantized_net as qn
def genCnv(input, num_outputs, learning_parameters):
# A function to generate the cnv network topology which matches the overlay for the Pynq board.
# WARNING: If you change this file, it's likely the resultant weights will not fit on the Pynq... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/cnv.py",
"copies": "1",
"size": "8127",
"license": "bsd-3-clause",
"hash": -2773586619946016000,
"line_mean": 33.0041841004,
"line_max": 107,
"alpha_frac": 0.5765965301,
"autogenerated": false,
"ratio": 4.11493670886076,
"config_test": ... |
import lasagne
import quantization as q
import quantized_net as qn
def genLfc(input, num_outputs, learning_parameters):
# A function to generate the lfc network topology which matches the overlay for the Pynq board.
# WARNING: If you change this file, it's likely the resultant weights will not fit on the Pynq... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/lfc.py",
"copies": "1",
"size": "4117",
"license": "bsd-3-clause",
"hash": -4570189370777603000,
"line_mean": 38.5865384615,
"line_max": 107,
"alpha_frac": 0.6631042021,
"autogenerated": false,
"ratio": 4.192464358452138,
"config_test":... |
from __future__ import print_function
import sys
import os
import time
from argparse import ArgumentParser
import numpy as np
np.random.seed(1234) # for reproducibility
# specifying the gpu to use
# import theano.sandbox.cuda
# theano.sandbox.cuda.use('gpu1')
import theano
import theano.tensor as T
import lasagn... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/mnist.py",
"copies": "1",
"size": "7721",
"license": "bsd-3-clause",
"hash": -5452925896018380000,
"line_mean": 37.605,
"line_max": 126,
"alpha_frac": 0.677632431,
"autogenerated": false,
"ratio": 3.4936651583710407,
"config_test": true... |
import numpy as np
import scipy.ndimage as ndimg
def linear_rotations(X, Y, angles, original=True):
Xo = np.copy(X)
Yo = np.copy(Y)
i = 0
for angle in angles:
Xtmp = ndimg.rotate(Xo, angle, prefilter=False, mode='nearest', axes=(2,3), reshape=False)
Ytmp = np.copy(Yo)
if not or... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/augmentors.py",
"copies": "1",
"size": "3607",
"license": "bsd-3-clause",
"hash": 7348121904898430000,
"line_mean": 37.3723404255,
"line_max": 136,
"alpha_frac": 0.6307180482,
"autogenerated": false,
"ratio": 3.3836772983114445,
"config... |
import theano
import theano.tensor as T
import numpy as np
from functools import partial
from theano.scalar.basic import UnaryScalarOp, same_out_nocomplex
from theano.tensor.elemwise import Elemwise
# Our own rounding function, that does not set the gradient to 0 like Theano's
class Round3(UnaryScalarOp):
d... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/quantization.py",
"copies": "1",
"size": "5758",
"license": "bsd-3-clause",
"hash": 1279140318710156300,
"line_mean": 36.6339869281,
"line_max": 135,
"alpha_frac": 0.6877387982,
"autogenerated": false,
"ratio": 3.569745815251085,
"confi... |
import time
from collections import OrderedDict
import numpy as np
# specifying the gpu to use
# import theano.sandbox.cuda
# theano.sandbox.cuda.use('gpu1')
import theano
import theano.tensor as T
import lasagne
from theano.sandbox.rng_mrg import MRG_RandomStreams as RandomStreams
import augmentors
# a class ... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/quantized_net.py",
"copies": "1",
"size": "11235",
"license": "bsd-3-clause",
"hash": -1735805022909202400,
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"line_max": 158,
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"autogenerated": false,
"ratio": 3.6811926605504586,
"c... |
# Copyright (c) 2020, Xilinx
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the followin... | {
"repo_name": "Xilinx/BNN-PYNQ",
"path": "bnn/src/training/mnist-gen-weights-W1A2.py",
"copies": "1",
"size": "2559",
"license": "bsd-3-clause",
"hash": 9147194519432233000,
"line_mean": 40.9508196721,
"line_max": 99,
"alpha_frac": 0.7268464244,
"autogenerated": false,
"ratio": 3.7577092511013217... |
import tkinter as tk
import tkinter.ttk as ttk
from tkinter import PhotoImage
import os
import glob
colors = {
#~ "frame": "#9ee874", # a green color for testing etc
#~ "disabledfg": "#9ee874",
#~ "selectbg": "#9ee874",
#~ "selectfg": "#9ee874"
"frame": "#efefef",
"disabledfg": "#aaaaaa",
"selectbg": "#657a9e... | {
"repo_name": "timeyyy/tttt",
"path": "tttt/button_styling.py",
"copies": "1",
"size": "3449",
"license": "bsd-3-clause",
"hash": 1470057812523053800,
"line_mean": 35.6914893617,
"line_max": 96,
"alpha_frac": 0.6729486808,
"autogenerated": false,
"ratio": 3.505081300813008,
"config_test": false... |
from engine.modem import Modem
import time
#
# this modem lets us do unit testing
#
class CompletedException(Exception): pass
class MockModem(Modem):
def __init__(self, prog):
self.org = time.time()
self.prog = prog
def poll(self):
# play back programmed modem commands
now = t... | {
"repo_name": "benjaveri/phonescreen",
"path": "v2/test/mock_modem.py",
"copies": "1",
"size": "1242",
"license": "bsd-3-clause",
"hash": -5932192162618214000,
"line_mean": 27.2272727273,
"line_max": 72,
"alpha_frac": 0.5458937198,
"autogenerated": false,
"ratio": 3.9056603773584904,
"config_te... |
from test.mock_modem import MockModem, CompletedException
from engine.database import Database
from engine.sm import StateMachine
#
# set up test environment
#
# modem program
REDIAL_WINDOW = 1
prog = [
# blacklist test
{ "at": 1.0, "from":"408--black", "expect":"block" },
# whitelist test
{ "at": 1.5... | {
"repo_name": "benjaveri/phonescreen",
"path": "v2/test.py",
"copies": "1",
"size": "2193",
"license": "bsd-3-clause",
"hash": 8529163217910860000,
"line_mean": 27.4805194805,
"line_max": 76,
"alpha_frac": 0.5950752394,
"autogenerated": false,
"ratio": 3.0714285714285716,
"config_test": true,
... |
from v1.interfaces import *
from v1.core import *
DBPATH = ":memory:"
REDIAL_TIMEOUT = 3 #s
class CompletedException(Exception): pass
class FakeModem(Modem):
def __init__(self):
self.buf = []
self.org = time.time()
self.pgm = [
# blacklist test
{ "at": 1.0,... | {
"repo_name": "benjaveri/phonescreen",
"path": "v1/unit_test.py",
"copies": "1",
"size": "3075",
"license": "bsd-3-clause",
"hash": 1237649419970552600,
"line_mean": 31.3684210526,
"line_max": 76,
"alpha_frac": 0.5313821138,
"autogenerated": false,
"ratio": 3.626179245283019,
"config_test": fal... |
import serial,sys,os.path # pip install pyserial
from v1.interfaces import *
from v1.core import *
if len(sys.argv) != 3:
print "main.py <path for database> <serial port>"
sys.exit(1)
ECHO = False
PATH = sys.argv[1]
PORT = sys.argv[2]
DBPATH = os.path.join(PATH,"numbers.sqlite")
REDIAL_TIMEOUT = 60 #... | {
"repo_name": "benjaveri/phonescreen",
"path": "v1/main.py",
"copies": "1",
"size": "1354",
"license": "bsd-3-clause",
"hash": -9027892066148085000,
"line_mean": 24.0740740741,
"line_max": 64,
"alpha_frac": 0.576070901,
"autogenerated": false,
"ratio": 3.2161520190023754,
"config_test": false,
... |
import sqlite3, time
# log states
LS_IDLE = "idle"
LS_BLOCK = "blacklist"
LS_PMODE = "pmode"
LS_HALT = "halt"
#
# database abstraction
#
class Database:
def __init__(self,filename):
self.filename = filename
self.conn = sqlite3.connect(filename)
def __enter__(self):
self.crsr = self.... | {
"repo_name": "benjaveri/phonescreen",
"path": "v2/engine/database.py",
"copies": "1",
"size": "2567",
"license": "bsd-3-clause",
"hash": 6399832961646292000,
"line_mean": 33.2266666667,
"line_max": 127,
"alpha_frac": 0.5816127776,
"autogenerated": false,
"ratio": 3.9922239502332815,
"config_te... |
import sys, re
from engine.database import Database
# blacklist.py [del|delete|remove] [number]
def clean(s):
return re.sub(' +', ' ', s.strip())
try:
PRIMARY = "blacklist"
SECONDARY = "whitelist"
REMOVE = (len(sys.argv) > 2) and sys.argv[1] in ["del","delete","remove"]
NUMBER = (sys.argv[2] if R... | {
"repo_name": "benjaveri/phonescreen",
"path": "v2/blacklist.py",
"copies": "1",
"size": "1336",
"license": "bsd-3-clause",
"hash": 8589221947601320000,
"line_mean": 32.4,
"line_max": 97,
"alpha_frac": 0.6167664671,
"autogenerated": false,
"ratio": 3.399491094147583,
"config_test": false,
"ha... |
import sys, re
from engine.database import Database
# whitelist.py [del|delete|remove] [number]
def clean(s):
return re.sub(' +', ' ', s.strip())
try:
PRIMARY = "whitelist"
SECONDARY = "blacklist"
REMOVE = (len(sys.argv) > 2) and sys.argv[1] in ["del","delete","remove"]
NUMBER = (sys.argv[2] if R... | {
"repo_name": "benjaveri/phonescreen",
"path": "v2/whitelist.py",
"copies": "1",
"size": "1336",
"license": "bsd-3-clause",
"hash": 7993572665742935000,
"line_mean": 32.4,
"line_max": 97,
"alpha_frac": 0.6167664671,
"autogenerated": false,
"ratio": 3.399491094147583,
"config_test": false,
"ha... |
import time
class Core:
def __init__(self,db,modem,redial_timeout):
self.db = db
self.modem = modem
self.redial_timeout = redial_timeout
with self.db as conn:
conn.execute("CREATE TABLE IF NOT EXISTS props (id INTEGER PRIMARY KEY ASC,key TEXT UNIQUE,value TEXT)")
... | {
"repo_name": "benjaveri/phonescreen",
"path": "v1/core.py",
"copies": "1",
"size": "4257",
"license": "bsd-3-clause",
"hash": -5073933172183871000,
"line_mean": 42.8865979381,
"line_max": 127,
"alpha_frac": 0.4998825464,
"autogenerated": false,
"ratio": 4.78314606741573,
"config_test": false,
... |
import time, serial # pip install pyserial
NEWLINE = "\r\n"
HEALTH_CHECK_PERIOD = 60*60 # how often to check that modem is still alive
class Modem:
def poll(self): raise NotImplementedError
def ring_through(self): raise NotImplementedError
def answer_as_fax(self, sleep): raise NotImplementedError
def ... | {
"repo_name": "benjaveri/phonescreen",
"path": "v2/engine/modem.py",
"copies": "1",
"size": "2614",
"license": "bsd-3-clause",
"hash": 7281809342244389000,
"line_mean": 25.9484536082,
"line_max": 74,
"alpha_frac": 0.5535577659,
"autogenerated": false,
"ratio": 3.6973125884016973,
"config_test":... |
"""BSDDB BTree-based Shelve OID Storage"""
import bsddb, shelve, traceback, sys
from twistedsnmp import oidstore, errors, pysnmpproto
import struct, weakref
OID = pysnmpproto.oid.OID
if pysnmpproto.USE_STRING_OIDS:
def oidToSortable( oid ):
"""Convert a dotted-format OID to a sortable string"""
return "".join([
... | {
"repo_name": "mmattice/TwistedSNMP",
"path": "bsdoidstore.py",
"copies": "1",
"size": "4498",
"license": "bsd-3-clause",
"hash": -61109660027558160,
"line_mean": 27.4683544304,
"line_max": 71,
"alpha_frac": 0.6809693197,
"autogenerated": false,
"ratio": 3.1698379140239608,
"config_test": false... |
from setuptools import setup, find_packages
import sys, os
import os.path as op
HERE = op.dirname(__file__)
README = open(op.join(HERE, 'README')).READ()
setup(name='drslib',
version=version,
description="A library for extracting analytics from the ESGF system",
long_description=README,
,
cla... | {
"repo_name": "stephenpascoe/esgf-analytics",
"path": "setup.py",
"copies": "1",
"size": "1073",
"license": "bsd-3-clause",
"hash": -6266431222985474000,
"line_mean": 28,
"line_max": 95,
"alpha_frac": 0.6411929171,
"autogenerated": false,
"ratio": 3.6621160409556315,
"config_test": false,
"ha... |
from setuptools import setup, find_packages
import sys, os
__version__ = '0.1.4a2'
__description__ = """
Metaconfig
==========
Metaconfig is a library for centralising your Python's ConfigParser
files. It is inspired by the logging module where it is increadibly
easy to start writing code that depends on logging w... | {
"repo_name": "cedadev/metaconfig",
"path": "setup.py",
"copies": "1",
"size": "1774",
"license": "bsd-3-clause",
"hash": -1571121698683913000,
"line_mean": 28.5666666667,
"line_max": 77,
"alpha_frac": 0.6662908681,
"autogenerated": false,
"ratio": 4.004514672686231,
"config_test": true,
"has... |
from setuptools import setup, find_packages
import sys, os
version = '0.3.1p3'
drs_version = '0.28'
setup(name='drslib',
version=version,
description="A library for processing the CMIP5 Data Reference Syntax",
long_description="""\
This library supports the generation of paths and filenames
corres... | {
"repo_name": "ESGF/esgf-drslib",
"path": "setup.py",
"copies": "1",
"size": "1574",
"license": "bsd-3-clause",
"hash": -5517075854405684000,
"line_mean": 31.7916666667,
"line_max": 95,
"alpha_frac": 0.6391359593,
"autogenerated": false,
"ratio": 3.3704496788008567,
"config_test": false,
"has... |
"""
A framework for translating DRS objects to and from filenames and paths.
This module is very object-heavy and over engineered. However, it does the job.
"""
#!TODO: CORDEX. Completely reimplement translation in a more flexible manner
# Maybe use the Python logic programming library used by IRIS. We sho... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/translate.py",
"copies": "1",
"size": "19365",
"license": "bsd-3-clause",
"hash": -2792944269373414400,
"line_mean": 29.2106084243,
"line_max": 112,
"alpha_frac": 0.5990188484,
"autogenerated": false,
"ratio": 3.7161773172135866,
"config_test": ... |
"""
A translator specific to CMIP3
The CMIP3 translation code is less complete than CMIP5. It focuses
on translating paths to DRS instances.
1. CMIP3 files or paths cannot be generated from DRS instances
2. the code doesn't use MIP tables to validate and deduce components
"""
import re
import logging
log = l... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/cmip3.py",
"copies": "1",
"size": "9592",
"license": "bsd-3-clause",
"hash": -7830867715433713000,
"line_mean": 29.5477707006,
"line_max": 105,
"alpha_frac": 0.5793369475,
"autogenerated": false,
"ratio": 3.3421602787456446,
"config_test": false... |
"""
"""
#!TODO: tidy this up and review what needs documenting.
import os
import sys
import metaconfig
config = metaconfig.get_config('drslib')
##############################################################################
# Configure the location of MIP tables.
#
# This can be configured with the MIP_TABLE_P... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/config.py",
"copies": "1",
"size": "6597",
"license": "bsd-3-clause",
"hash": 2861525471115010600,
"line_mean": 23.8943396226,
"line_max": 101,
"alpha_frac": 0.6143701683,
"autogenerated": false,
"ratio": 3.5315845824411136,
"config_test": true,... |
'''
The drs module contains a minimal model class for DRS information
and some utility functions for converting filesystem paths to and from
DRS objects.
More sophisticated conversions can be done with the
:mod:`drslib.translate` and :mod:`drslib.cmip5` modules.
'''
import os
import itertools
import re
from abc im... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/drs.py",
"copies": "1",
"size": "16959",
"license": "bsd-3-clause",
"hash": 5992350760387457000,
"line_mean": 29.947080292,
"line_max": 113,
"alpha_frac": 0.5755056312,
"autogenerated": false,
"ratio": 4.094398841139546,
"config_test": false,
... |
"""
Simple parser for MIP tables.
My interpretation of the format from reading the CMIP5 tables.
"""
import re
from glob import glob
import csv
import logging
log = logging.getLogger(__name__)
entry_ids = ['axis_entry', 'variable_entry']
line_rexp = re.compile(r'(\w+):\s*(.*)')
dquote = '"(?:""|[^"])*"'
squote =... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/mip_table.py",
"copies": "1",
"size": "8060",
"license": "bsd-3-clause",
"hash": -6118902066071691000,
"line_mean": 25.4262295082,
"line_max": 107,
"alpha_frac": 0.559057072,
"autogenerated": false,
"ratio": 3.8601532567049808,
"config_test": fa... |
# -*- coding: utf-8 -*-
#
# drslib documentation build configuration file, created by
# sphinx-quickstart on Thu Jul 8 11:22:21 2010.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All... | {
"repo_name": "ESGF/esgf-drslib",
"path": "doc/conf.py",
"copies": "1",
"size": "7396",
"license": "bsd-3-clause",
"hash": 7857934502530055000,
"line_mean": 31.4385964912,
"line_max": 80,
"alpha_frac": 0.7049756625,
"autogenerated": false,
"ratio": 3.71098845960863,
"config_test": false,
"has... |
"""
Bulk Generate DRS objects for testing.
"""
import random
from copy import copy
from datetime import datetime
import os, sys
import os.path as op
from drslib.drs import CmipDRS
from drslib import cmip5, config
from itertools import izip
# Python 2.5 compatibility
try:
from itertools import product
except ... | {
"repo_name": "ESGF/esgf-drslib",
"path": "test/gen_drs.py",
"copies": "1",
"size": "7015",
"license": "bsd-3-clause",
"hash": -7822207505014605000,
"line_mean": 26.40234375,
"line_max": 80,
"alpha_frac": 0.5962936565,
"autogenerated": false,
"ratio": 3.3774675012036592,
"config_test": false,
... |
"""
Generate mapfiles from streams of DRS objects
"""
#!TODO: check againsts similar code in datanode_admin and merge
CHECKSUM_BLOCKSIZE = 2**20
import stat, os
def write_mapfile(stream, fh, checksum_func=None):
"""
Write an esgpublish mapfile from a stream of tuples (filepath, drs).
:param checksum... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/mapfile.py",
"copies": "1",
"size": "1669",
"license": "bsd-3-clause",
"hash": 7074971919737047000,
"line_mean": 23.9104477612,
"line_max": 107,
"alpha_frac": 0.6237267825,
"autogenerated": false,
"ratio": 3.5662393162393164,
"config_test": fals... |
"""
Manage DRS directory structure versioning.
This module provides an API for manipulating a DRS directory structure
to facilitate keeping multiple versions of datasets on disk
simultaniously. The class :class:`DRSTree` provides a top-level
interface to the DRS directory structure and a container for :class:`Publis... | {
"repo_name": "ESGF/esgf-drslib",
"path": "drslib/drs_tree.py",
"copies": "1",
"size": "12016",
"license": "bsd-3-clause",
"hash": -3840925594459336700,
"line_mean": 33.6282420749,
"line_max": 108,
"alpha_frac": 0.5873002663,
"autogenerated": false,
"ratio": 3.9960093116062523,
"config_test": f... |
"""
Statistics on dap requests
"""
import numpy
import sys
import re
from dapbench.dap_request import DapRequest
class DapStats(object):
"""
Container for OPeNDAP request statistics.
"""
def __init__(self):
self.datasets = {}
def get_cursor(self, dataset=None):
if dataset is No... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/dap_stats.py",
"copies": "1",
"size": "5754",
"license": "bsd-3-clause",
"hash": -6630446582895862000,
"line_mean": 29.6063829787,
"line_max": 82,
"alpha_frac": 0.5785540494,
"autogenerated": false,
"ratio": 4.227773695811903,
"config_test": f... |
"""
Process a curl verbose log to capture OpenDAP requests.
"""
import re
class DapRequest(object):
def __init__(self, dataset, response, projection, subset):
self.response = response
self.dataset = dataset
self.projection = projection
self.subset = subset
def __str__(self):
... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/dap_request.py",
"copies": "1",
"size": "1885",
"license": "bsd-3-clause",
"hash": -7810588819997025000,
"line_mean": 29.9016393443,
"line_max": 86,
"alpha_frac": 0.5299734748,
"autogenerated": false,
"ratio": 4.027777777777778,
"config_test":... |
class ResponseCode(object):
"""
We only allow Response codes to be instances of ResponseCode
The calling code must set them e.g. with
status = Response.failure
and can expect at a minimum that status.__nonzero__() will return
True for success or False for failure. The implementation ... | {
"repo_name": "cedadev/mistamover",
"path": "lib/Response.py",
"copies": "1",
"size": "4523",
"license": "bsd-3-clause",
"hash": -1729287051742294300,
"line_mean": 27.9935897436,
"line_max": 91,
"alpha_frac": 0.6062347999,
"autogenerated": false,
"ratio": 4.168663594470046,
"config_test": false... |
from AbstractControlFile import *
class ControlFile(AbstractControlFile):
"""
Simple class to read/write control file.
Note read() and create() are in base class; encode() and decode()
are helpers for them.
Lines of control file are:
magic1
data_file_name
expected_size... | {
"repo_name": "cedadev/mistamover",
"path": "lib/ControlFile.py",
"copies": "1",
"size": "1681",
"license": "bsd-3-clause",
"hash": -5026727638796916000,
"line_mean": 24.8615384615,
"line_max": 71,
"alpha_frac": 0.6162998215,
"autogenerated": false,
"ratio": 3.40973630831643,
"config_test": fal... |
from AbstractControlFile import *
class ThankyouFile(AbstractControlFile):
"""
Simple class to read/write thank you file.
It contains the name of the receipt file that is being acknowledged.
Lines of Thankyou file are:
magic1
basename_for_receipt_file
magic2
Note read()... | {
"repo_name": "cedadev/mistamover",
"path": "lib/ThankyouFile.py",
"copies": "1",
"size": "1161",
"license": "bsd-3-clause",
"hash": 2778457417958082600,
"line_mean": 22.22,
"line_max": 72,
"alpha_frac": 0.6296296296,
"autogenerated": false,
"ratio": 3.4864864864864864,
"config_test": false,
... |
from AbstractControlFile import *
SUCCESS = 0
BAD_SIZE = 1
BAD_CKSUM = 2
IO_ERROR = 3
NO_SUCH_FILE = 4
status_description = { 0: "success",
1: "data file has bad size",
2: "data file has bad checksum",
3: "I/O error reading data file",
... | {
"repo_name": "cedadev/mistamover",
"path": "lib/ReceiptFile.py",
"copies": "1",
"size": "2782",
"license": "bsd-3-clause",
"hash": -424600853882407200,
"line_mean": 26.82,
"line_max": 72,
"alpha_frac": 0.6067577283,
"autogenerated": false,
"ratio": 3.7093333333333334,
"config_test": false,
"... |
from BaseConfig import BaseConfig
class GlobalConfig(BaseConfig):
"""
A configuration-file object based on BaseConfig with the added feature of
some compulsory variables which are relevant to stager global configuration
"""
def reread(self):
BaseConfig.readDefaults(self)
BaseConf... | {
"repo_name": "cedadev/mistamover",
"path": "lib/Config/GlobalConfig.py",
"copies": "1",
"size": "1033",
"license": "bsd-3-clause",
"hash": -7535833031696333000,
"line_mean": 28.5142857143,
"line_max": 79,
"alpha_frac": 0.6534365924,
"autogenerated": false,
"ratio": 3.637323943661972,
"config_t... |
from setuptools import setup, find_packages
import sys, os
import ceda_cc
from ceda_cc.versionConfig import version, versionComment
# Load long_description from README.txt
here = os.path.dirname(__file__)
readme_txt = os.path.join(here, 'README.txt')
long_description = '\n\n' + open(readme_txt).read()
setup(name='ce... | {
"repo_name": "martinjuckes/ceda_cc",
"path": "setup.py",
"copies": "1",
"size": "1435",
"license": "bsd-3-clause",
"hash": -4624950229652956000,
"line_mean": 32.3720930233,
"line_max": 84,
"alpha_frac": 0.6543554007,
"autogenerated": false,
"ratio": 3.5607940446650126,
"config_test": false,
... |
from setuptools import setup, find_packages
import sys, os
# Import version from the top-level package
sys.path[:0] = os.path.dirname(__file__)
from pyesgf import __version__
from pyesgf import __doc__ as long_description
setup(name='esgf-pyclient',
version=__version__,
description="A library interactin... | {
"repo_name": "sterlingbaldwin/esgf-pyclient",
"path": "setup.py",
"copies": "2",
"size": "1419",
"license": "bsd-3-clause",
"hash": -7130470813378001000,
"line_mean": 32,
"line_max": 84,
"alpha_frac": 0.6497533474,
"autogenerated": false,
"ratio": 3.7440633245382586,
"config_test": false,
"h... |
from TransferBase import TransferBase
from TransferUtils import *
import os
import tempfile
import sys
this_dir = os.path.dirname(__file__)
top_dir = os.path.abspath(os.path.dirname(this_dir + "../"))
lib_dir = os.path.join(top_dir, "lib")
sys.path.append(lib_dir)
from Response import Response, ResponseCode
from Con... | {
"repo_name": "cedadev/mistamover",
"path": "lib/TransferModules/GridFTPTransferMyProxy.py",
"copies": "1",
"size": "10703",
"license": "bsd-3-clause",
"hash": -3847077731988030500,
"line_mean": 41.983935743,
"line_max": 97,
"alpha_frac": 0.5831075399,
"autogenerated": false,
"ratio": 3.697063903... |
from TransferBase import TransferBase
from TransferUtils import TransferUtils
import os
import tempfile
import time
import sys
this_dir = os.path.dirname(__file__)
top_dir = os.path.abspath(os.path.dirname(this_dir + "../"))
lib_dir = os.path.join(top_dir, "lib")
sys.path.append(lib_dir)
from Response import Respons... | {
"repo_name": "cedadev/mistamover",
"path": "lib/TransferModules/FtpTransfer.py",
"copies": "1",
"size": "10797",
"license": "bsd-3-clause",
"hash": -5655465468520843000,
"line_mean": 38.2618181818,
"line_max": 105,
"alpha_frac": 0.5648791331,
"autogenerated": false,
"ratio": 3.5692561983471074,
... |
import os
import stat
import time
import hashlib
import Response
import MyZipFile
class _SizeAdder(object):
"""
Helper for FileUtils.getDirSize()
Provides add() that we can call from FileUtils.recurseDir()
"""
def __init__(self, futils):
self.total = 0
self.futils = futils
d... | {
"repo_name": "cedadev/mistamover",
"path": "lib/FileUtils.py",
"copies": "1",
"size": "13035",
"license": "bsd-3-clause",
"hash": -5691437855925812000,
"line_mean": 30.9485294118,
"line_max": 110,
"alpha_frac": 0.5436133487,
"autogenerated": false,
"ratio": 4.516632016632016,
"config_test": fa... |
import os
import time
import hashlib
import sys
this_dir = os.path.dirname(__file__)
top_dir = os.path.abspath(os.path.dirname(this_dir + "../"))
lib_dir = os.path.join(top_dir, "lib")
sys.path.append(lib_dir)
from FileUtils import futils
class TransferUtils:
"""
Utilities class for TransferBase
"""
... | {
"repo_name": "cedadev/mistamover",
"path": "lib/TransferModules/TransferUtils.py",
"copies": "1",
"size": "4272",
"license": "bsd-3-clause",
"hash": -3072189851701545000,
"line_mean": 29.9565217391,
"line_max": 81,
"alpha_frac": 0.5735018727,
"autogenerated": false,
"ratio": 4.084130019120459,
... |
import os
import time
from AbstractDatasetController import AbstractDatasetController
import ReceiptFile
import ControlFile
import ThankyouFile
from StatusFlag import status
from FileUtils import futils
class DatasetArrivalMonitor(AbstractDatasetController):
"""
Sub-process that monitors arrivals,
runs c... | {
"repo_name": "cedadev/mistamover",
"path": "lib/DatasetArrivalMonitor.py",
"copies": "1",
"size": "10509",
"license": "bsd-3-clause",
"hash": -9083575762572536000,
"line_mean": 38.6566037736,
"line_max": 99,
"alpha_frac": 0.5997716243,
"autogenerated": false,
"ratio": 4.181854357341822,
"confi... |
import os
class Invalid(Exception):
pass
class FileExists(Exception):
pass
class AbstractControlFile(object):
"""
Simple class to read/write control file.
Note that this base class contains read() and create()
that the calling code will actually call, but they rely on the
subclass to p... | {
"repo_name": "cedadev/mistamover",
"path": "lib/AbstractControlFile.py",
"copies": "1",
"size": "2674",
"license": "bsd-3-clause",
"hash": -6385862685858649000,
"line_mean": 28.3846153846,
"line_max": 78,
"alpha_frac": 0.5774121167,
"autogenerated": false,
"ratio": 3.985096870342772,
"config_t... |
import os
from BaseConfig import BaseConfig
import GlobalConfig
from StatusFlag import status
class DatasetConfig(BaseConfig):
"""
A configuration which bases the filename on the global configuration, and
inherits from the global configuration any variables which
it does not provide locally.
It ... | {
"repo_name": "cedadev/mistamover",
"path": "lib/Config/DatasetConfig.py",
"copies": "1",
"size": "3565",
"license": "bsd-3-clause",
"hash": -4217314218610752000,
"line_mean": 32.6320754717,
"line_max": 123,
"alpha_frac": 0.6,
"autogenerated": false,
"ratio": 4.135730858468677,
"config_test": t... |
import sys
import os
import time
this_dir = os.path.dirname(__file__)
if os.path.basename(this_dir) != "test":
raise Exception("Must be run from 'test' directory to work.")
top_dir = os.path.abspath(os.path.dirname(this_dir))
lib_dir = os.path.join(top_dir, "lib")
sys.path.append(lib_dir)
import MiStaMoverCont... | {
"repo_name": "cedadev/mistamover",
"path": "test/emailtest.py",
"copies": "1",
"size": "1436",
"license": "bsd-3-clause",
"hash": 5072894762170762000,
"line_mean": 30.9111111111,
"line_max": 92,
"alpha_frac": 0.6072423398,
"autogenerated": false,
"ratio": 3.563275434243176,
"config_test": true... |
import sys, os
this_dir = os.path.dirname(__file__)
if os.path.basename(this_dir) != "unittests":
raise Exception("Must be run from 'test' directory to work.")
top_dir = os.path.abspath(os.path.dirname(this_dir))
lib_dir = os.path.join(top_dir, "../lib")
sys.path.append(lib_dir)
import FileUtils
if __name__ ==... | {
"repo_name": "cedadev/mistamover",
"path": "test/unittests/test_FileUtils.py",
"copies": "1",
"size": "3660",
"license": "bsd-3-clause",
"hash": -5465318404708663000,
"line_mean": 35.9696969697,
"line_max": 84,
"alpha_frac": 0.4486338798,
"autogenerated": false,
"ratio": 3.995633187772926,
"co... |
import time
import os
import signal
from AbstractDatasetController import AbstractDatasetController
from FileUtils import futils
from StatusFlag import status
from TransferModules.TransferBaseController import TransferBaseController
class DatasetTransferController(AbstractDatasetController):
"""
A sub-proc... | {
"repo_name": "cedadev/mistamover",
"path": "lib/DatasetTransferController.py",
"copies": "1",
"size": "8445",
"license": "bsd-3-clause",
"hash": -817427044657998100,
"line_mean": 39.4066985646,
"line_max": 175,
"alpha_frac": 0.5824748372,
"autogenerated": false,
"ratio": 4.5722793719545205,
"c... |
import time
import os
import LoggerClient
import Daemon
from FileUtils import futils
from StatusFlag import status
class AbstractDatasetController(object):
"""
Base class for DatasetTransferController, TransferUnitController,
and DatasetArrivalMonitor.
"""
def __init__(self, dataset_config, de... | {
"repo_name": "cedadev/mistamover",
"path": "lib/AbstractDatasetController.py",
"copies": "1",
"size": "3753",
"license": "bsd-3-clause",
"hash": -3638803610192425000,
"line_mean": 29.2661290323,
"line_max": 79,
"alpha_frac": 0.622968292,
"autogenerated": false,
"ratio": 4.156146179401993,
"con... |
import time
import re
import smtplib
import commands
#from email.MIMEText import MIMEText
import Daemon
#import tempfile
import os
class AlertEmailer(object):
"""
An emailer that provides the sendEmail() method to send email,
whose only argument is the message and everything else is
taken from the ... | {
"repo_name": "cedadev/mistamover",
"path": "lib/AlertEmailer.py",
"copies": "1",
"size": "4127",
"license": "bsd-3-clause",
"hash": -3173003667567231000,
"line_mean": 27.8601398601,
"line_max": 128,
"alpha_frac": 0.5757208626,
"autogenerated": false,
"ratio": 3.9644572526416906,
"config_test":... |
"""
add call to set the process name - if we have ctypes available
"""
try:
import ctypes as C
def setProcName(name):
"""
Set the name of the process to be the specified string
when we do a "ps".
To avoid big complications, the string will be truncated if it
exceeds ... | {
"repo_name": "cedadev/mistamover",
"path": "lib/ProcName.py",
"copies": "1",
"size": "1527",
"license": "bsd-3-clause",
"hash": 9207959762459870000,
"line_mean": 27.2777777778,
"line_max": 78,
"alpha_frac": 0.5920104781,
"autogenerated": false,
"ratio": 3.8756345177664975,
"config_test": false... |
"""
A simple subclass of zipfile.ZipFile that lets you
remove leading path element from the zipfile name.
Use exactly as for ZipFile except that on instantiaion you have the
argument remove_prefix which is the prefix you want removed from all
paths in the zip file, and method writeWithoutPrefix() which will
be like ... | {
"repo_name": "cedadev/mistamover",
"path": "lib/MyZipFile.py",
"copies": "1",
"size": "1161",
"license": "bsd-3-clause",
"hash": 6950089951063947000,
"line_mean": 32.1714285714,
"line_max": 71,
"alpha_frac": 0.6916451335,
"autogenerated": false,
"ratio": 3.9760273972602738,
"config_test": fals... |
"""
A wrapper around the NetCDF4 Java API
@note: currently read-only
"""
from ucar.nc2.dataset import NetcdfDataset
from UserDict import DictMixin
class AttributeDict(DictMixin):
def __init__(self, ref, is_global=True):
self._ref = ref
self._is_global = is_global
def __getitem__(self, key)... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/jython/netcdf.py",
"copies": "1",
"size": "2687",
"license": "bsd-3-clause",
"hash": 7506108957389403000,
"line_mean": 24.8365384615,
"line_max": 74,
"alpha_frac": 0.5880163751,
"autogenerated": false,
"ratio": 3.7633053221288515,
"config_test... |
'''
Checker configuration class.
Created on 29 Sep 2011
@author: rwilkinson
'''
class Configuration(object):
"""Checker configuration.
"""
def __init__(self, key_file, cert_file, debug, recurse=False, listonly=False, quiet=False,
services_to_test="", service_extensions=None, public_servi... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/configuration.py",
"copies": "1",
"size": "3240",
"license": "bsd-3-clause",
"hash": 7818355912386013000,
"line_mean": 45.2857142857,
"line_max": 98,
"alpha_frac": 0.6447530864,
"autogenerated": false,
"ratio": 4.343163538873995,
"... |
'''
Checker results class
Created on 29 Sep 2011
@author: rwilkinson
'''
import bisect
class Results(object):
def __init__(self, access_allowed_count=0, access_denied_count=0, inconsistent_count=0,
untested_count=0):
self.access_allowed_count = access_allowed_count
self.access_d... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/results.py",
"copies": "1",
"size": "1942",
"license": "bsd-3-clause",
"hash": 8832174049061482000,
"line_mean": 34.3090909091,
"line_max": 93,
"alpha_frac": 0.6431513903,
"autogenerated": false,
"ratio": 3.749034749034749,
"config... |
'''
Configuration data for services.
Created on 26 Sep 2011
@author: rwilkinson
'''
class Service(object):
# Extensions to be appended to URLs for particular services to access different types of data.
_default_extensions = {
'OPENDAP': [".html", ".dds", ".das", ".asc", ".ascii", ".dods"],
'H... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/service_config.py",
"copies": "1",
"size": "2486",
"license": "bsd-3-clause",
"hash": -8391336329318144000,
"line_mean": 37.84375,
"line_max": 100,
"alpha_frac": 0.5997586484,
"autogenerated": false,
"ratio": 4.431372549019608,
"co... |
'''
Created on 27 Sep 2011
@author: rwilkinson
'''
from optparse import OptionParser
import os
import sys
import dapbench.thredds.lib.catalog_access as catalog_access
from dapbench.thredds.lib.configuration import Configuration
def main():
'''Utility to report on the ability of the user to access datasets in a T... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/scripts/check_catalog.py",
"copies": "1",
"size": "4999",
"license": "bsd-3-clause",
"hash": -6508310851603781000,
"line_mean": 50.5360824742,
"line_max": 120,
"alpha_frac": 0.601120224,
"autogenerated": false,
"ratio": 4.328138528138528... |
'''
Created on 28 Oct 2011
@author: rwilkinson
'''
from optparse import OptionParser
import os
import sys
import dapbench.thredds.lib.metadata_finder as metadata_finder
from dapbench.thredds.lib.configuration import Configuration
def main():
'''Utility to report on the presence of expected dataset properties in ... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/scripts/check_metadata.py",
"copies": "1",
"size": "3690",
"license": "bsd-3-clause",
"hash": -6158101762403453000,
"line_mean": 45.7088607595,
"line_max": 114,
"alpha_frac": 0.6178861789,
"autogenerated": false,
"ratio": 4.4138755980861... |
'''
Created on 28 Sep 2011
@author: rwilkinson
'''
from dapbench.thredds.lib.configuration import Configuration
import dapbench.thredds.lib.httpget as httpget
from optparse import OptionParser
import os
def main():
'''Utility to check access to a URL by the current user and optionally to return the data
retr... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/scripts/check_url.py",
"copies": "1",
"size": "2077",
"license": "bsd-3-clause",
"hash": 2772055386901351000,
"line_mean": 40.54,
"line_max": 114,
"alpha_frac": 0.6340876264,
"autogenerated": false,
"ratio": 3.9262759924385633,
"config... |
'''
Created on 30 Sep 2011
@author: rwilkinson
'''
import os
import unittest
import dapbench.thredds.lib.catalog_access as catalog_access
from dapbench.thredds.lib.configuration import Configuration
from dapbench.thredds.lib.results import Results
class Test(unittest.TestCase):
"""Example test of access to catal... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/test/test_access.py",
"copies": "1",
"size": "2849",
"license": "bsd-3-clause",
"hash": -465164199351333600,
"line_mean": 38.5694444444,
"line_max": 99,
"alpha_frac": 0.5931905932,
"autogenerated": false,
"ratio": 3.9790502793296088,
"... |
'''
Created on 5 Oct 2011
@author: rwilkinson
'''
from dapbench.thredds.lib.configuration import Configuration
import dapbench.thredds.lib.file_access as file_access
from optparse import OptionParser
import os
import sys
def main():
'''Utility to check access to a URL by the current user and optionally to return... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/scripts/check_files.py",
"copies": "1",
"size": "3159",
"license": "bsd-3-clause",
"hash": -262376935109955140,
"line_mean": 40.5657894737,
"line_max": 114,
"alpha_frac": 0.6131687243,
"autogenerated": false,
"ratio": 4.065637065637065,
... |
"""
Daemon.py - daemon module
=========================
Module holds a couple of classes related to launching code in a daemon process.
The key usage concept is that the parent process should instantiate
``DaemonCtl``, passing the method for the daemon to run, and the arguments
to pass to that method. This will l... | {
"repo_name": "cedadev/mistamover",
"path": "lib/Daemon.py",
"copies": "1",
"size": "12512",
"license": "bsd-3-clause",
"hash": 1529224571978357000,
"line_mean": 25.9655172414,
"line_max": 84,
"alpha_frac": 0.535326087,
"autogenerated": false,
"ratio": 4.368715083798882,
"config_test": true,
... |
'''
Dataset and enclosed access entities.
Created on 26 Sep 2011
@author: rwilkinson
'''
class Dataset(object):
'''Dataset entity as read from a THREDDS catalog.
'''
def __init__(self, name, url_path, service_name):
"""
@param name - name attribute
@param url_path - urlPath attrib... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/dataset_config.py",
"copies": "1",
"size": "2057",
"license": "bsd-3-clause",
"hash": 214044124941114700,
"line_mean": 28.8260869565,
"line_max": 125,
"alpha_frac": 0.5882352941,
"autogenerated": false,
"ratio": 3.74,
"config_test"... |
'''
Functions for manipulating URLs.
Created on 27 Sep 2011
@author: rwilkinson
'''
import urlparse
def get_base_url(url):
"""Returns the base part of a URL, i.e., excluding any characters after the last /.
@param url - URL to process
@return base URL
"""
parts = url.rpartition('/')
return p... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/url_util.py",
"copies": "1",
"size": "2448",
"license": "bsd-3-clause",
"hash": -8481098691664598000,
"line_mean": 34.4782608696,
"line_max": 99,
"alpha_frac": 0.6687091503,
"autogenerated": false,
"ratio": 3.8795562599049127,
"con... |
"""
Main dispatcher script for the 4 subscripts:
1. check_url.py
2. check_files.py
3. check_catalog.py
4. check_metadata.py
Execute with the first argument as 'url', 'files', 'catalog' or 'metadata' to execute
the required script.
"""
import sys
import os.path as op
from check_url import main as url_main
f... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/scripts/dispatch.py",
"copies": "1",
"size": "1370",
"license": "bsd-3-clause",
"hash": -5351894322243310000,
"line_mean": 21.0967741935,
"line_max": 89,
"alpha_frac": 0.6313868613,
"autogenerated": false,
"ratio": 3.374384236453202,
"... |
'''
Parses required details from a THREDDS catalog.
Created on 26 Sep 2011
@author: rwilkinson
'''
import xml.dom.minidom as minidom
from dapbench.thredds.lib.dataset_config import Dataset, Access, CatalogRef
from dapbench.thredds.lib.service_config import Service
import dapbench.thredds.lib.url_util as url_util
imp... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/catalog_parser.py",
"copies": "1",
"size": "7909",
"license": "bsd-3-clause",
"hash": -6128188120085722000,
"line_mean": 48.7421383648,
"line_max": 129,
"alpha_frac": 0.6410418511,
"autogenerated": false,
"ratio": 4.63056206088993,
... |
"""
Provides BaseConfig - a class that makes a config file act like a dictionary
myconf = BaseConfig("myfile.ini")
val = myconf["mysection"]["mykey"]
for each value you read, it tries to return int, failing this float,
failing this returns bool for special string values 'true' / 'false'
(case insensitive tes... | {
"repo_name": "cedadev/mistamover",
"path": "lib/Config/BaseConfig.py",
"copies": "1",
"size": "13298",
"license": "bsd-3-clause",
"hash": 2607763747651723000,
"line_mean": 31.3552311436,
"line_max": 109,
"alpha_frac": 0.5542938788,
"autogenerated": false,
"ratio": 4.2042364843503,
"config_test... |
"""
This is adapted from the example from the python docs.
http://docs.python.org/library/logging.html
"""
import cPickle
import logging
import logging.handlers
import SocketServer
import struct
class LogRecordStreamHandler(SocketServer.StreamRequestHandler):
"""Handler for a streaming logging request.
Th... | {
"repo_name": "cedadev/mistamover",
"path": "lib/LogReceiver.py",
"copies": "1",
"size": "3147",
"license": "bsd-3-clause",
"hash": 3912277632126398000,
"line_mean": 29.2596153846,
"line_max": 77,
"alpha_frac": 0.60883381,
"autogenerated": false,
"ratio": 4.419943820224719,
"config_test": false... |
"""
Tools for creating test data.
"""
import netCDF4
def anonymise(ncpath):
"""
Remove metadata from the netetcdf file ncpath.
@warning: This function is destructive and isn't written to be generic
for any CF-NetCDF file.
"""
exclude_attrs = set(['standard_name', 'missing_value', '_Fil... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/mkdata.py",
"copies": "1",
"size": "1981",
"license": "bsd-3-clause",
"hash": 1277114890091880700,
"line_mean": 24.0759493671,
"line_max": 74,
"alpha_frac": 0.5608278647,
"autogenerated": false,
"ratio": 3.5693693693693693,
"config_test": fals... |
"""
Utilities for creating and processing XML,
@author: rwilkinson
"""
def appendElement(document, parentEl, elementType, elementText):
"""Adds a text element to a specified parent.
"""
el = document.createElement(elementType)
textEl = document.createTextNode(elementText)
el.appendChild(textEl)
... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/thredds/lib/xml_util.py",
"copies": "1",
"size": "3564",
"license": "bsd-3-clause",
"hash": 4053282820967030000,
"line_mean": 30.8214285714,
"line_max": 115,
"alpha_frac": 0.6596520763,
"autogenerated": false,
"ratio": 4.040816326530612,
"conf... |
"""
Utilities for processing nmon output.
"""
import csv
import pandas
import datetime as DT
import matplotlib.pyplot as plt
DATETIME_FORMAT = '%H:%M:%S %d-%b-%Y'
TIMESTEP_STREAM = 'ZZZZ'
INCLUDE_STREAMS = [
'DISKXFER',
'DISKREAD',
'MEM',
#'CPU02',
#'CPU01',
'VM',
'DISKBUSY',
'DISK... | {
"repo_name": "cedadev/dapbench",
"path": "dapbench/nmon.py",
"copies": "1",
"size": "3579",
"license": "bsd-3-clause",
"hash": -2095657179159871200,
"line_mean": 27.4047619048,
"line_max": 93,
"alpha_frac": 0.556021235,
"autogenerated": false,
"ratio": 3.6483180428134556,
"config_test": false,... |
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