openbrain_v1_0 / sample /README.md
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OpenBrain v1.0 reviewer sample

This directory contains the public reviewer sample for OpenBrain v1.0. It is intended for quick inspection without downloading the full release.

Contents

  • sample_manifest.csv: metadata and QC-7 values for the sample.
  • cases/<case_id>/image.nii.gz: preprocessed T1-weighted image.
  • cases/<case_id>/brain_mask.nii.gz: SynthStrip-derived brain mask.
  • cases/<case_id>/whole_brain_segmentation.nii.gz: released automated whole-brain segmentation.

The sample contains 64 source-diverse cases. All sample cases are drawn from the HighConf tier and were selected by low combined risk R, with Q1/Q3/Q4 visual-cleanliness tie-breaks. The sample is therefore designed to show high-confidence examples for reviewer preview and smoke testing.

These labels are algorithmic pseudo-labels, not manual ground truth, and should not be used for clinical decision-making.

Download

hf download openbrain-anon/openbrain_v1_0 \
  --repo-type dataset \
  --include "sample/**" \
  --local-dir openbrain_v1_0_sample

Preview

This sample directory includes a standalone preview script:

pip install nibabel matplotlib numpy
python openbrain_v1_0_sample/sample/preview_sample_case.py \
  --case-dir openbrain_v1_0_sample/sample/cases/<case_id> \
  --output preview.png