repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
rvraghav93/scikit-learn | sklearn/manifold/t_sne.py | 8 | 35910 | # Author: Alexander Fabisch -- <afabisch@informatik.uni-bremen.de>
# Author: Christopher Moody <chrisemoody@gmail.com>
# Author: Nick Travers <nickt@squareup.com>
# License: BSD 3 clause (C) 2014
# This is the exact and Barnes-Hut t-SNE implementation. There are other
# modifications of the algorithm:
# * Fast Optimi... | bsd-3-clause |
andyfaff/scipy | scipy/stats/stats.py | 3 | 310601 | # Copyright 2002 Gary Strangman. All rights reserved
# Copyright 2002-2016 The SciPy Developers
#
# The original code from Gary Strangman was heavily adapted for
# use in SciPy by Travis Oliphant. The original code came with the
# following disclaimer:
#
# This software is provided "as-is". There are no expressed or... | bsd-3-clause |
waqasbhatti/astrobase | astrobase/lcproc/varthreshold.py | 2 | 31916 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
# varthreshold.py - Waqas Bhatti (wbhatti@astro.princeton.edu) - Feb 2019
'''
This contains functions to investigate where to set a threshold for
several variability indices to distinguish between variable and non-variable
stars.
'''
#############
## LOGGING ##
#########... | mit |
ky822/scikit-learn | sklearn/ensemble/tests/test_forest.py | 6 | 35370 | """
Testing for the forest module (sklearn.ensemble.forest).
"""
# Authors: Gilles Louppe,
# Brian Holt,
# Andreas Mueller,
# Arnaud Joly
# License: BSD 3 clause
import pickle
from collections import defaultdict
from itertools import product
import numpy as np
from scipy.sparse import csr_... | bsd-3-clause |
rohit21122012/DCASE2013 | runs/2013/dnn_layerwise/bs1024/dnn_4layer/src/evaluation.py | 38 | 42838 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import numpy
import math
from sklearn import metrics
class DCASE2016_SceneClassification_Metrics():
"""DCASE 2016 scene classification metrics
Examples
--------
>>> dcase2016_scene_metric = DCASE2016_SceneClassification_Metrics(class_list=... | mit |
pravsripad/mne-python | mne/tests/test_cov.py | 4 | 34692 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import os.path as op
import itertools as itt
from numpy.testing import (assert_array_almost_equal, assert_array_equal,
assert_equal, assert_allclose)
im... | bsd-3-clause |
UT-CWE/Hyospy | Hyospy_ensemble/lib/SUNTANS/DataIO/romsio_old.py | 1 | 61855 | """
Tools for dealing with ROMS model output
See Octant project as well
Created on Fri Mar 08 15:09:46 2013
@author: mrayson
"""
import numpy as np
from netCDF4 import Dataset, MFDataset, num2date
from datetime import datetime, timedelta
import matplotlib.pyplot as plt
from scipy import interpolate
#... | mit |
mitdbg/modeldb | client/verta/verta/_internal_utils/_utils.py | 1 | 30525 | # -*- coding: utf-8 -*-
import datetime
import glob
import inspect
import json
import numbers
import os
import re
import string
import subprocess
import sys
import threading
import time
import requests
from requests.adapters import HTTPAdapter
from urllib3.util.retry import Retry
from google.protobuf import json_for... | mit |
ruohoruotsi/librosa | librosa/core/spectrum.py | 1 | 36276 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
'''Utilities for spectral processing'''
import numpy as np
import scipy.fftpack as fft
import scipy
import scipy.signal
import scipy.interpolate
import six
from . import time_frequency
from .. import cache
from .. import util
from ..util.decorators import moved
from ..uti... | isc |
kdebrab/pandas | pandas/tests/io/test_excel.py | 2 | 96935 | # pylint: disable=E1101
import os
import warnings
from datetime import datetime, date, time, timedelta
from distutils.version import LooseVersion
from functools import partial
from warnings import catch_warnings
from collections import OrderedDict
import numpy as np
import pytest
from numpy import nan
import pandas a... | bsd-3-clause |
tobiasgehring/qudi | logic/odmr_logic.py | 1 | 39134 | # -*- coding: utf-8 -*-
"""
This file contains the Qudi Logic module base class.
Qudi is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Qudi... | gpl-3.0 |
USCLiquidPropulsionLaboratory/Engine-sizing-snake | GOX_kero.py | 1 | 36017 | ## GOX-kerosene sim
#@ Author Juha Nieminen
#import sys
#sys.path.insert(0, '/Users/juhanieminen/Documents/adamrocket')
import RocketComponents as rc
from physical_constants import poise, inches, Runiv, gallons, lbm, \
gearth, atm, psi, lbf
from numpy import pi, linspace, cos, radians, sqrt, exp, log, array, full... | mit |
xuewei4d/scikit-learn | sklearn/model_selection/tests/test_split.py | 6 | 63286 | """Test the split module"""
import warnings
import pytest
import numpy as np
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix
from scipy import stats
from scipy.special import comb
from itertools import combinations
from itertools import combinations_with_replacement
from itertools import permutations
from ... | bsd-3-clause |
tylerjereddy/scipy | scipy/special/orthogonal.py | 7 | 63520 | """
A collection of functions to find the weights and abscissas for
Gaussian Quadrature.
These calculations are done by finding the eigenvalues of a
tridiagonal matrix whose entries are dependent on the coefficients
in the recursion formula for the orthogonal polynomials with the
corresponding weighting function over ... | bsd-3-clause |
nmartensen/pandas | pandas/core/strings.py | 2 | 59878 | import numpy as np
from pandas.compat import zip
from pandas.core.dtypes.generic import ABCSeries, ABCIndex
from pandas.core.dtypes.missing import isna, notna
from pandas.core.dtypes.common import (
is_bool_dtype,
is_categorical_dtype,
is_object_dtype,
is_string_like,
is_list_like,
is_scalar,
... | bsd-3-clause |
xodus7/tensorflow | tensorflow/python/estimator/canned/linear_testing_utils.py | 2 | 86121 | # Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
rohit21122012/DCASE2013 | runs/2016/dnn2016med_nomel/dnn6.py | 2 | 32057 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# DCASE 2016::Acoustic Scene Classification / Baseline System
#import sys
#sys.path.insert(0, '../')
from src.ui import *
from src.general import *
from src.files import *
from src.features import *
from src.dataset import *
from src.evaluation import *
import numpy
im... | mit |
ViennaRNA/forgi | forgi/projection/projection2d.py | 1 | 46522 | from __future__ import absolute_import, division, print_function, unicode_literals
# int is not imported from builtins here for performance reasons.
# See: https://github.com/PythonCharmers/python-future/issues/136
from builtins import (ascii, bytes, chr, dict, filter, hex, input,
map, next, oct, ... | gpl-3.0 |
uglyboxer/linear_neuron | net-p3/lib/python3.5/site-packages/matplotlib/__init__.py | 10 | 48253 | """
This is an object-oriented plotting library.
A procedural interface is provided by the companion pyplot module,
which may be imported directly, e.g.::
import matplotlib.pyplot as plt
or using ipython::
ipython
at your terminal, followed by::
In [1]: %matplotlib
In [2]: import matplotlib.pyplot... | mit |
nakul02/incubator-systemml | src/main/python/systemml/mllearn/estimators.py | 4 | 41695 | #-------------------------------------------------------------
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under... | apache-2.0 |
TinyOS-Camp/DDEA-DEV | Archive/[14_10_11] Dr_Jung_Update/df_data_analysis_ver3_old.py | 3 | 111874 | # coding: utf-8
"""
==============================================
Visualizing the enegy-sensor-weather structure
==============================================
This example employs several unsupervised learning techniques to extract
the energy data structure from variations in Building Automation System (BAS)
and ... | gpl-2.0 |
saiwing-yeung/scikit-learn | sklearn/metrics/tests/test_ranking.py | 32 | 41905 | from __future__ import division, print_function
import numpy as np
from itertools import product
import warnings
from scipy.sparse import csr_matrix
from sklearn import datasets
from sklearn import svm
from sklearn import ensemble
from sklearn.datasets import make_multilabel_classification
from sklearn.random_projec... | bsd-3-clause |
louisLouL/pair_trading | capstone_env/lib/python3.6/site-packages/pandas/core/groupby.py | 4 | 148451 | import types
from functools import wraps
import numpy as np
import datetime
import collections
import warnings
import copy
from textwrap import dedent
from pandas.compat import (
zip, range, lzip,
callable, map
)
from pandas import compat
from pandas.compat.numpy import function as nv, _np_version_under1p8
fr... | mit |
guschmue/tensorflow | tensorflow/python/keras/_impl/keras/engine/training.py | 5 | 98431 | # Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
keflavich/spectral-cube | spectral_cube/spectral_cube.py | 2 | 165227 | """
A class to represent a 3-d position-position-velocity spectral cube.
"""
from __future__ import print_function, absolute_import, division
import warnings
from functools import wraps
import operator
import re
import itertools
import copy
import tempfile
import textwrap
from pathlib import PosixPath
import six
from... | bsd-3-clause |
czhengsci/pymatgen | pymatgen/io/abinit/flows.py | 3 | 116124 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
A Flow is a container for Works, and works consist of tasks.
Flows are the final objects that can be dumped directly to a pickle file on disk
Flows are executed using abirun (abipy).
"""
from __future__ impo... | mit |
Titan-C/scikit-learn | sklearn/cluster/tests/test_k_means.py | 10 | 32655 | """Testing for K-means"""
import sys
import numpy as np
from scipy import sparse as sp
from sklearn.utils.testing import assert_equal
from sklearn.utils.testing import assert_array_equal
from sklearn.utils.testing import assert_array_almost_equal
from sklearn.utils.testing import SkipTest
from sklearn.utils.testing i... | bsd-3-clause |
yanlend/scikit-learn | sklearn/metrics/tests/test_classification.py | 53 | 49781 | from __future__ import division, print_function
import numpy as np
from scipy import linalg
from functools import partial
from itertools import product
import warnings
from sklearn import datasets
from sklearn import svm
from sklearn.datasets import make_multilabel_classification
from sklearn.preprocessing import la... | bsd-3-clause |
Fireblend/scikit-learn | sklearn/metrics/pairwise.py | 5 | 43701 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Robert Layton <robertlayton@gmail.com>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Philippe Gervais <philippe.gervais@inria.fr>
# Lars Buitinck ... | bsd-3-clause |
hrichstein/Stellar_mass_env_Density | Codes/Scripts/clean_copy.py | 1 | 75233 | from __future__ import division, absolute_import
import astropy.stats
import glob
import math
import matplotlib.pyplot as plt
from matplotlib import ticker
from matplotlib.ticker import FormatStrFormatter
import numpy as np
import os
import pandas as pd
from scipy import optimize,spatial
###########################... | mit |
ngoix/OCRF | sklearn/ensemble/weight_boosting.py | 28 | 40740 | """Weight Boosting
This module contains weight boosting estimators for both classification and
regression.
The module structure is the following:
- The ``BaseWeightBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regression and classification
only differ from each ot... | bsd-3-clause |
tomlof/scikit-learn | sklearn/naive_bayes.py | 20 | 30830 | # -*- coding: utf-8 -*-
"""
The :mod:`sklearn.naive_bayes` module implements Naive Bayes algorithms. These
are supervised learning methods based on applying Bayes' theorem with strong
(naive) feature independence assumptions.
"""
# Author: Vincent Michel <vincent.michel@inria.fr>
# Minor fixes by Fabian Pedre... | bsd-3-clause |
chrisburr/scikit-learn | sklearn/decomposition/nmf.py | 8 | 46556 | """ Non-negative matrix factorization
"""
# Author: Vlad Niculae
# Lars Buitinck <L.J.Buitinck@uva.nl>
# Mathieu Blondel <mathieu@mblondel.org>
# Tom Dupre la Tour
# Author: Chih-Jen Lin, National Taiwan University (original projected gradient
# ... | bsd-3-clause |
ip-tools/ip-navigator | patzilla/navigator/export.py | 1 | 34177 | # -*- coding: utf-8 -*-
# (c) 2016-2018 Andreas Motl <andreas.motl@ip-tools.org>
import os
import json
import types
import string
import logging
import pandas
import numpy
import html2text
import where
import envoy
import shutil
import tempfile
from io import BytesIO
from textwrap import dedent
from lxml import etree a... | agpl-3.0 |
zihua/scikit-learn | sklearn/grid_search.py | 6 | 38777 | """
The :mod:`sklearn.grid_search` includes utilities to fine-tune the parameters
of an estimator.
"""
from __future__ import print_function
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# ... | bsd-3-clause |
sahilshekhawat/sympy | sympy/utilities/runtests.py | 3 | 79087 | """
This is our testing framework.
Goals:
* it should be compatible with py.test and operate very similarly
(or identically)
* doesn't require any external dependencies
* preferably all the functionality should be in this file only
* no magic, just import the test file and execute the test functions, that's it
* po... | bsd-3-clause |
rrohan/scikit-learn | sklearn/tree/tests/test_tree.py | 11 | 48140 | """
Testing for the tree module (sklearn.tree).
"""
import pickle
from functools import partial
from itertools import product
import platform
import numpy as np
from scipy.sparse import csc_matrix
from scipy.sparse import csr_matrix
from scipy.sparse import coo_matrix
from sklearn.random_projection import sparse_rand... | bsd-3-clause |
zCFD/zutil | zutil/post/post.py | 1 | 38113 | """ Helper functions for accessing Paraview functionality
.. moduleauthor:: Zenotech Ltd
"""
from tqdm import tqdm
from IPython.display import HTML, Javascript, display
import uuid
import csv
from zutil import analysis
import time
import math
from zutil import mag
import json
from zutil import rotate_vector
from para... | mit |
zhenwendai/RGP | svi_experiments/rgp_experiments.py | 1 | 42403 | #!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Mon Aug 21 11:51:21 2017
@author: grigoral
"""
from __future__ import print_function
import autoreg
import GPy
import numpy as np
from matplotlib import pyplot as plt
import scipy.io as io
from autoreg.benchmark import tasks
# Define class for normalizati... | bsd-3-clause |
emilroz/openmicroscopy | components/tools/OmeroPy/src/flim-omero.py | 5 | 31427 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
components/tools/OmeroPy/scripts/omero/analysis_scripts/FLIM.py
-----------------------------------------------------------------------------
Copyright (C) 2006-2010 University of Dundee. All rights reserved.
This program is free software; you can redistribute i... | gpl-2.0 |
pastas/pastas | pastas/stressmodels.py | 1 | 49209 | """This module contains all the stress models available in Pastas.
Stress models are used to translate an input time series into a
contribution that explains (part of) the output series.
Examples
--------
>>> sm = ps.StressModel(stress, rfunc=ps.Gamma, name="sm1")
>>> ml.add_stressmodel(stressmodel=sm)
See Also
---... | mit |
agiovann/Constrained_NMF | use_cases/granule_cells/prepare_nice_image.py | 2 | 39221 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Created on Sun Jul 24 17:06:17 2016
@author: agiovann
"""
from __future__ import division
from __future__ import print_function
#%%
from builtins import str
from builtins import range
from past.utils import old_div
try:
get_ipython().magic('load_ext autoreload')... | gpl-2.0 |
WMD-Bath/sulfur-model | scripts/plots.py | 2 | 45105 | #! /usr/bin/env python
import argparse
import os.path
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.ticker import MultipleLocator
from matplotlib import gridspec
from scipy.special import erf, erfc
import ase.thermochemistry
import ase.db
import shelve
from itertools import cycle
from matplotli... | gpl-3.0 |
CASIANICA/brainDecodingToolbox | braincode/prf/tfprf.py | 1 | 57805 | # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
import os
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ['CUDA_VISIBLE_DEVICES']='0'
import numpy as np
from math import log
from scipy.misc import imresize
import tables
import tensorflow as... | bsd-3-clause |
DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/linear_model/logistic.py | 1 | 67834 | """
Logistic Regression
"""
# Author: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Fabian Pedregosa <f@bianp.net>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Manoj Kumar <manojkumarsivaraj334@gmail.com>
# Lars Buitinck
# Simon Wu <s8wu@uwaterloo.ca>
imp... | mit |
henryroe/PyNOMAD | nomad/nomad.py | 1 | 39768 | import os.path
import os
from pandas import DataFrame
from pandas.io.parsers import read_csv
import numpy as np
import datetime
import gzip
import sys
import pickle
import glob
base_dir = os.path.abspath(os.path.dirname(__file__))
about = {}
with open(os.path.join(base_dir, "__about__.py")) as f:
exec(f.read(), a... | mit |
thunderhoser/GewitterGefahr | gewittergefahr/gg_utils/linkage.py | 1 | 114840 | """Links hazardous events to storm cells.
Currently the only "hazardous events" handled by this code are damaging
straight-line wind and tornadoes.
--- DEFINITIONS ---
"Storm cell" = a single thunderstorm (standard meteorological definition). I
will use S to denote a storm cell.
"Storm object" = one thunderstorm a... | mit |
faroit/mir_eval | mir_eval/segment.py | 1 | 43678 | # CREATED:2013-08-13 12:02:42 by Brian McFee <brm2132@columbia.edu>
'''
Evaluation criteria for structural segmentation fall into two categories:
boundary annotation and structural annotation. Boundary annotation is the task
of predicting the times at which structural changes occur, such as when a verse
transitions to... | mit |
anurag03/integration_tests | cfme/utils/smem_memory_monitor.py | 2 | 67384 | """Monitor Memory on a CFME/Miq appliance and builds report&graphs displaying usage per process."""
import json
import time
import traceback
from collections import OrderedDict
from datetime import datetime
from threading import Thread
import os
import six
import yaml
from yaycl import AttrDict
from cfme.utils.conf i... | gpl-2.0 |
mrtommyb/GP_model_Kepler_data | code/transitemcee.py | 3 | 44176 | import sys
import numpy as np
#import matplotlib.pyplot as plt
import emcee
import tmodtom as tmod
import time as thetime
from scipy.stats import truncnorm
from claretquadpy import claretquad
from claret4ppy import claretlimb4p
from copy import deepcopy
from numpy import random
#from bilin_interp import ld_quad
clas... | mit |
WindCanDie/spark | python/pyspark/sql/types.py | 2 | 67075 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
ygenc/onlineLDA | onlineldavb_new/build/scipy/scipy/stats/distributions.py | 2 | 213950 | # Functions to implement several important functions for
# various Continous and Discrete Probability Distributions
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
import math
import warnings
from copy import copy
from scipy.misc import comb, derivative
from s... | gpl-3.0 |
BiaDarkia/scikit-learn | sklearn/decomposition/nmf.py | 3 | 45741 | """ Non-negative matrix factorization
"""
# Author: Vlad Niculae
# Lars Buitinck
# Mathieu Blondel <mathieu@mblondel.org>
# Tom Dupre la Tour
# License: BSD 3 clause
from __future__ import division, print_function
from math import sqrt
import warnings
import numbers
import time
import numpy ... | bsd-3-clause |
Lawrence-Liu/scikit-learn | sklearn/ensemble/tests/test_forest.py | 57 | 35265 | """
Testing for the forest module (sklearn.ensemble.forest).
"""
# Authors: Gilles Louppe,
# Brian Holt,
# Andreas Mueller,
# Arnaud Joly
# License: BSD 3 clause
import pickle
from collections import defaultdict
from itertools import product
import numpy as np
from scipy.sparse import csr_... | bsd-3-clause |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/tseries/tests/test_timedeltas.py | 1 | 73366 | # pylint: disable-msg=E1101,W0612
from __future__ import division
from datetime import timedelta, time
import nose
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
from pandas import (Index, Series, DataFrame, Timestamp, Timedelta,
TimedeltaIndex, isnull, date_ran... | mit |
xubenben/scikit-learn | sklearn/neighbors/base.py | 22 | 31143 | """Base and mixin classes for nearest neighbors"""
# Authors: Jake Vanderplas <vanderplas@astro.washington.edu>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Sparseness support by Lars Buitinck <L.J.Buitinck@uva.nl>
# Multi-output... | bsd-3-clause |
Ziqi-Li/bknqgis | pandas/pandas/tests/reshape/test_merge_asof.py | 7 | 37720 | import os
import pytest
import pytz
import numpy as np
import pandas as pd
from pandas import (merge_asof, read_csv,
to_datetime, Timedelta)
from pandas.core.reshape.merge import MergeError
from pandas.util import testing as tm
from pandas.util.testing import assert_frame_equal
class TestAsOfMerg... | gpl-2.0 |
linebp/pandas | pandas/io/formats/format.py | 1 | 86559 | # -*- coding: utf-8 -*-
"""
Internal module for formatting output data in csv, html,
and latex files. This module also applies to display formatting.
"""
from __future__ import print_function
from distutils.version import LooseVersion
# pylint: disable=W0141
from textwrap import dedent
from pandas.core.dtypes.missin... | bsd-3-clause |
agrimaldi/metaseq | metaseq/plotutils.py | 3 | 34743 | """
Module with handy utilities for plotting genomic signal
"""
import itertools
import matplotlib
from matplotlib import pyplot as plt
from matplotlib import mlab
import numpy as np
from matplotlib.ticker import MaxNLocator
from mpl_toolkits.axes_grid1 import make_axes_locatable
from matplotlib import gridspec
import ... | mit |
jdparkins/MasiPlot | hapi.py | 1 | 628709 | # -*- coding: utf-8 -*-
'''
This module provides an access to the HITRAN data.
Data is downloaded and cached.
This module serves as a simple database manager frontend.
API is aimed to be RESTful, which means that interaction
between local API and remote data-server will be held
via sending RESTful queries... | gpl-3.0 |
nelson-liu/scikit-learn | sklearn/linear_model/coordinate_descent.py | 4 | 81531 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
from abc import ABCMeta, abstractmethod
import n... | bsd-3-clause |
zhenv5/scikit-learn | sklearn/externals/joblib/parallel.py | 79 | 35628 | """
Helpers for embarrassingly parallel code.
"""
# Author: Gael Varoquaux < gael dot varoquaux at normalesup dot org >
# Copyright: 2010, Gael Varoquaux
# License: BSD 3 clause
from __future__ import division
import os
import sys
import gc
import warnings
from math import sqrt
import functools
import time
import thr... | bsd-3-clause |
kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/pandas/tests/formats/test_format.py | 7 | 165663 | # -*- coding: utf-8 -*-
# TODO(wesm): lots of issues making flake8 hard
# flake8: noqa
from __future__ import print_function
from distutils.version import LooseVersion
import re
from pandas.compat import (range, zip, lrange, StringIO, PY3,
u, lzip, is_platform_windows,
... | gpl-3.0 |
lthurlow/Network-Grapher | proj/external/matplotlib-1.2.1/lib/matplotlib/animation.py | 2 | 37256 | # TODO:
# * Loop Delay is broken on GTKAgg. This is because source_remove() is not
# working as we want. PyGTK bug?
# * Documentation -- this will need a new section of the User's Guide.
# Both for Animations and just timers.
# - Also need to update http://www.scipy.org/Cookbook/Matplotlib/Animations
# * Blit
... | mit |
jonyroda97/redbot-amigosprovaveis | lib/matplotlib/tri/triinterpolate.py | 2 | 65840 | """
Interpolation inside triangular grids.
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
from six.moves import xrange
from matplotlib.tri import Triangulation
from matplotlib.tri.trifinder import TriFinder
from matplotlib.tri.tritools impor... | gpl-3.0 |
perryjohnson/biplaneblade | biplane_blade_lib/prep_stn23_mesh.py | 1 | 31016 | """Write initial TrueGrid files for one biplane blade station.
Usage
-----
start an IPython (qt)console with the pylab flag:
$ ipython qtconsole --pylab
or
$ ipython --pylab
Then, from the prompt, run this script:
|> %run biplane_blade_lib/prep_stnXX_mesh.py
or
|> import biplane_blade_lib/prep_stnXX_mesh
... | gpl-3.0 |
kenshay/ImageScripter | ProgramData/SystemFiles/Python/Lib/site-packages/pandas/core/frame.py | 7 | 214523 | """
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | gpl-3.0 |
meren/anvio | anvio/db.py | 1 | 36410 | # -*- coding: utf-8
# pylint: disable=line-too-long
"""
Low-level db operations.
"""
import os
import time
import math
import numpy
import pandas as pd
import sqlite3
import warnings
import anvio
import anvio.tables as tables
import anvio.terminal as terminal
import anvio.filesnpaths as filesnpaths
from anvio.er... | gpl-3.0 |
wlamond/scikit-learn | sklearn/preprocessing/data.py | 8 | 68191 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Eric Martin <eric@ericmart.in>
# Giorgio Patrini <giorgio.patrini@anu.edu.au>
# Lic... | bsd-3-clause |
shoyer/xray | xarray/core/indexing.py | 1 | 47782 | import functools
import operator
from collections import defaultdict
from contextlib import suppress
from datetime import timedelta
from typing import Sequence
import numpy as np
import pandas as pd
from . import duck_array_ops, nputils, utils
from .pycompat import dask_array_type, integer_types
from .utils import is... | apache-2.0 |
kernc/scikit-learn | sklearn/neighbors/base.py | 30 | 30564 | """Base and mixin classes for nearest neighbors"""
# Authors: Jake Vanderplas <vanderplas@astro.washington.edu>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Sparseness support by Lars Buitinck
# Multi-output support by Arnaud Jol... | bsd-3-clause |
gengliangwang/spark | python/pyspark/pandas/internal.py | 1 | 57972 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
potash/scikit-learn | sklearn/model_selection/_split.py | 7 | 61646 | """
The :mod:`sklearn.model_selection._split` module includes classes and
functions to split the data based on a preset strategy.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# Ragha... | bsd-3-clause |
videlec/sage-flatsurf | flatsurf/geometry/similarity_surface.py | 1 | 105268 | r"""
Similarity surfaces.
"""
from __future__ import absolute_import, print_function, division
from six.moves import range, map, filter, zip
from six import iteritems
import itertools
from sage.misc.cachefunc import cached_method
from sage.misc.sage_unittest import TestSuite
from sage.structure.sage_object import S... | gpl-2.0 |
alexandrebarachant/mne-python | mne/decoding/time_gen.py | 1 | 64983 | # Authors: Jean-Remi King <jeanremi.king@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Clement Moutard <clement.moutard@gmail.com>
#
# License: BSD (3-clause)
import numpy as np
import copy
from .base import _set_cv
f... | bsd-3-clause |
davidyezsetz/kuma | vendor/packages/ipython/IPython/usage.py | 7 | 31160 | # -*- coding: utf-8 -*-
#*****************************************************************************
# Copyright (C) 2001-2004 Fernando Perez. <fperez@colorado.edu>
#
# Distributed under the terms of the BSD License. The full license is in
# the file COPYING, distributed as part of this software.
#**********... | mpl-2.0 |
Cryptoverse/cryptoverse-probe | main.py | 1 | 58080 | from json import dumps as json_dump
from os import getenv, environ
from sys import stdout, platform
from traceback import print_exc as print_exception
from datetime import datetime
from time import sleep
from ete3 import Tree
from cryptography.hazmat.backends import default_backend
from cryptography.hazmat.primitives.a... | mit |
jpautom/scikit-learn | sklearn/gaussian_process/gaussian_process.py | 17 | 34896 | # -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# Licence: BSD 3 clause
from __future__ import print_function
import numpy as np
from scipy import linalg, optimize
from ..base import BaseEstimator, RegressorMixin
from ..metrics... | bsd-3-clause |
jblackburne/scikit-learn | sklearn/grid_search.py | 4 | 38651 | """
The :mod:`sklearn.grid_search` includes utilities to fine-tune the parameters
of an estimator.
"""
from __future__ import print_function
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# ... | bsd-3-clause |
markslwong/tensorflow | tensorflow/contrib/learn/python/learn/estimators/estimator.py | 1 | 55289 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
ericd/redeem | redeem/Autotune_2.py | 2 | 135061 | """
Autotune for Redeem
Author: Elias Bakken
email: elias(dot)bakken(at)gmail(dot)com
Website: http://www.thing-printer.com
License: GNU GPL v3: http://www.gnu.org/copyleft/gpl.html
Redeem is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
t... | gpl-3.0 |
petercable/xray | xray/test/test_dataset.py | 1 | 87064 | from copy import copy, deepcopy
from textwrap import dedent
try:
import cPickle as pickle
except ImportError:
import pickle
try:
import dask.array as da
except ImportError:
pass
import numpy as np
import pandas as pd
from xray import (align, concat, conventions, backends, Dataset, DataArray,
... | apache-2.0 |
anlambert/tulip | doc/python/tabulate.py | 1 | 60926 | # -*- coding: utf-8 -*-
# Copyright (c) 2011-2019 Sergey Astanin
# https://bitbucket.org/astanin/python-tabulate
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, includ... | lgpl-3.0 |
FCH808/FCH808.github.io | Intro to Data Science/Project1_Part1.py | 2 | 34015 | # -*- coding: utf-8 -*-
"""
Created on Fri Dec 19 13:46:12 2014
@author: fch
"""
import pandas as pd
import pandasql
import csv
filename="..\\data\\turnstile_data_master_with_weather.csv"
## Question 2.1
def num_rainy_days(filename):
'''
This function should run a SQL query on a dataframe of
weather da... | mit |
rpp0/lora-phy-fingerprinting | tf_train.py | 1 | 73515 | #!/usr/bin/python2
# tf_train.py
#
# Collection of ML algorithms to fingerprint radio devices using Tensorflow.
# A high level overview of the functionality provided by this code is given in
# the paper entitled "Physical-Layer Fingerprinting of LoRa devices using
# Supervised and Zero-Shot Learning", which was present... | bsd-3-clause |
brclark-usgs/flopy | flopy/plot/map.py | 1 | 30643 | import copy
import numpy as np
try:
import matplotlib.pyplot as plt
import matplotlib.colors
except:
plt = None
from . import plotutil
from .plotutil import bc_color_dict
from ..utils import SpatialReference
class ModelMap(object):
"""
Class to create a map of the model.
Paramet... | bsd-3-clause |
ryfeus/lambda-packs | LightGBM_sklearn_scipy_numpy/source/sklearn/neighbors/base.py | 19 | 30908 | """Base and mixin classes for nearest neighbors"""
# Authors: Jake Vanderplas <vanderplas@astro.washington.edu>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Sparseness support by Lars Buitinck
# Multi-output support by Arnaud Jol... | mit |
jeffery-do/Vizdoombot | doom/lib/python3.5/site-packages/matplotlib/__init__.py | 4 | 63770 | """
This is an object-oriented plotting library.
A procedural interface is provided by the companion pyplot module,
which may be imported directly, e.g.::
import matplotlib.pyplot as plt
or using ipython::
ipython
at your terminal, followed by::
In [1]: %matplotlib
In [2]: import matplotlib.pyplot... | mit |
yavalvas/yav_com | build/matplotlib/lib/matplotlib/axes/_base.py | 1 | 114520 | from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
from six.moves import xrange
import itertools
import warnings
import math
from operator import itemgetter
import numpy as np
from numpy import ma
import matplotlib
rcParams = matplotlib.rcParams
... | mit |
aleksandr-bakanov/astropy | astropy/table/tests/test_table.py | 3 | 93707 | # -*- coding: utf-8 -*-
# Licensed under a 3-clause BSD style license - see LICENSE.rst
import gc
import sys
import copy
from io import StringIO
from collections import OrderedDict
import pytest
import numpy as np
from numpy.testing import assert_allclose, assert_array_equal
from astropy.io import fits
from astropy.... | bsd-3-clause |
person142/scipy | scipy/interpolate/fitpack2.py | 1 | 66715 | """
fitpack --- curve and surface fitting with splines
fitpack is based on a collection of Fortran routines DIERCKX
by P. Dierckx (see http://www.netlib.org/dierckx/) transformed
to double routines by Pearu Peterson.
"""
# Created by Pearu Peterson, June,August 2003
__all__ = [
'UnivariateSpline',
'Interpolate... | bsd-3-clause |
oscarlazoarjona/fast | examples/doctest_08___Three_level_atom_V_symbolic.py | 1 | 72342 | # -*- coding: utf-8 -*-
# Copyright (C) 2017 Oscar Gerardo Lazo Arjona
# mailto: oscar.lazo@correo.nucleares.unam.mx
__doc__ = r"""
>>> from fast import *
>>> from matplotlib import pyplot
>>> from sympy import sin,cos,exp,sqrt,pi,zeros,I
>>> from numpy import array
>>> init_printing()
>>> print_ascii = True
>>> # p... | gpl-3.0 |
beiko-lab/gengis | bin/Lib/site-packages/matplotlib/colors.py | 3 | 53183 | """
A module for converting numbers or color arguments to *RGB* or *RGBA*
*RGB* and *RGBA* are sequences of, respectively, 3 or 4 floats in the
range 0-1.
This module includes functions and classes for color specification
conversions, and for mapping numbers to colors in a 1-D array of colors called
a colormap. Color... | gpl-3.0 |
herilalaina/scikit-learn | sklearn/cluster/k_means_.py | 5 | 60896 | """K-means clustering"""
# Authors: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Thomas Rueckstiess <ruecksti@in.tum.de>
# James Bergstra <james.bergstra@umontreal.ca>
# Jan Schlueter <scikit-learn@jan-schlueter.de>
# Nelle Varoquaux
# Peter Prettenhofer <peter.prettenh... | bsd-3-clause |
pgrinaway/yank | Yank/utils.py | 1 | 61480 | import os
import re
import sys
import copy
import glob
import json
import shutil
import signal
import pandas
import inspect
import logging
import itertools
import subprocess
import collections
from contextlib import contextmanager
from pkg_resources import resource_filename
import mdtraj
import parmed
import numpy as... | lgpl-3.0 |
louisLouL/pair_trading | capstone_env/lib/python3.6/site-packages/matplotlib/backends/backend_pdf.py | 2 | 98412 | # -*- coding: utf-8 -*-
"""
A PDF matplotlib backend
Author: Jouni K Seppänen <jks@iki.fi>
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
import codecs
import os
import re
import struct
import sys
import time
import warnings
import zlib
imp... | mit |
kevin-intel/scikit-learn | sklearn/utils/tests/test_extmath.py | 3 | 35962 | # Authors: Olivier Grisel <olivier.grisel@ensta.org>
# Mathieu Blondel <mathieu@mblondel.org>
# Denis Engemann <denis-alexander.engemann@inria.fr>
#
# License: BSD 3 clause
import numpy as np
from scipy import sparse
from scipy import linalg
from scipy import stats
from scipy.sparse.linalg import eig... | bsd-3-clause |
harisbal/pandas | pandas/tests/indexes/interval/test_interval.py | 1 | 47407 | from __future__ import division
import re
from itertools import permutations
import numpy as np
import pytest
import pandas as pd
import pandas.core.common as com
import pandas.util.testing as tm
from pandas import (
Index, Interval, IntervalIndex, Timedelta, Timestamp, date_range,
interval_range, isna, notn... | bsd-3-clause |
josephcslater/scipy | scipy/special/basic.py | 3 | 70421 | #
# Author: Travis Oliphant, 2002
#
from __future__ import division, print_function, absolute_import
import warnings
import numpy as np
import math
from scipy._lib.six import xrange
from numpy import (pi, asarray, floor, isscalar, iscomplex, real,
imag, sqrt, where, mgrid, sin, place, issubdtype,... | bsd-3-clause |
jreback/pandas | pandas/tests/io/test_sql.py | 1 | 106269 | """SQL io tests
The SQL tests are broken down in different classes:
- `PandasSQLTest`: base class with common methods for all test classes
- Tests for the public API (only tests with sqlite3)
- `_TestSQLApi` base class
- `TestSQLApi`: test the public API with sqlalchemy engine
- `TestSQLiteFallbackApi`: t... | bsd-3-clause |
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