repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
rnyang/learningprisoners | ipstrategy.py | 1 | 40015 | import random
import numpy as np
from sklearn import svm
from sklearn import linear_model
import string as S
from IPD import *
from strategy import *
# Basic Information Player
# If opponent is likely to defect, defect
# This does try to maximize score, just to win/tie each round
class BasicIP(Strategy):
... | mit |
matthew-tucker/mne-python | mne/tests/test_epochs.py | 1 | 64608 | # Author: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import os.path as op
from copy import deepcopy
from nose.tools import (assert_true, assert_equal, assert_raises,
assert_not_equal)
from numpy.... | bsd-3-clause |
sassoftware/saspy | saspy/sasdata.py | 1 | 69676 | #
# Copyright SAS Institute
#
# Licensed under the Apache License, Version 2.0 (the License);
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing... | apache-2.0 |
TomAugspurger/pandas | pandas/tests/indexes/test_base.py | 1 | 93451 | from collections import defaultdict
from datetime import datetime, timedelta
from io import StringIO
import math
import operator
import re
import numpy as np
import pytest
import pandas._config.config as cf
from pandas._libs.tslib import Timestamp
from pandas.compat.numpy import np_datetime64_compat
from pandas.util... | bsd-3-clause |
oscaribv/pyaneti | src/plot_data.py | 1 | 33652 | #Let us do the plots here
from matplotlib import gridspec
from matplotlib.colors import LogNorm
if ( is_seaborn_plot ):
import seaborn as sns
sns.set(style='ticks')
sns.set_color_codes(seaborn_palette)
fsx = figure_size_x
fsy = figure_size_y
fos = font_size_label
vari = params[0]
posterior = params[1]
chi2 = p... | gpl-3.0 |
mbaumBielefeld/popkin | popkin/model/arm2d2segment.py | 1 | 36697 | #!/usr/bin/env python
# coding: utf8
import numpy as np
import math
import random
import matplotlib.pyplot as plt
import logging
import copy
import pickle
from popkin.model.place_field import PlaceField, AngleField, PolarField
from popkin.model.neural_field import NeuralLayer
from popkin.model.som import SOM
import pyb... | gpl-2.0 |
atilag/qiskit-sdk-py | qiskit/tools/visualization.py | 1 | 71859 | # -*- coding: utf-8 -*-
# pylint: disable=invalid-name,anomalous-backslash-in-string
# Copyright 2017 IBM RESEARCH. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# ... | apache-2.0 |
zfrenchee/pandas | pandas/tests/test_algos.py | 1 | 57547 | # -*- coding: utf-8 -*-
import numpy as np
import pytest
from numpy.random import RandomState
from numpy import nan
from datetime import datetime
from itertools import permutations
from pandas import (Series, Categorical, CategoricalIndex,
Timestamp, DatetimeIndex, Index, IntervalIndex)
import pan... | bsd-3-clause |
mortonjt/scipy | scipy/signal/signaltools.py | 1 | 81793 | # Author: Travis Oliphant
# 1999 -- 2002
from __future__ import division, print_function, absolute_import
import warnings
import threading
from . import sigtools
from scipy._lib.six import callable
from scipy._lib._version import NumpyVersion
from scipy import linalg
from scipy.fftpack import (fft, ifft, ifftshift, ... | bsd-3-clause |
cbclab/MDT | mdt/__init__.py | 1 | 41044 | import collections
import logging
import logging.config as logging_config
import os
from contextlib import contextmanager
import numpy as np
import mot
from mot.configuration import CLRuntimeInfo, CLRuntimeAction
from .__version__ import VERSION, VERSION_STATUS, __version__
from mdt.configuration import get_logging_c... | lgpl-3.0 |
jjhelmus/artview | artview/components/plot_grid_legacy.py | 1 | 41694 | """
plot_grid.py
Class instance used to make Display.
"""
# Load the needed packages
import numpy as np
import os
import pyart
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg
from matplotlib.backends.backend_qt4agg import NavigationToolbar2QT as \
NavigationToolbar
from matplotlib.figure import F... | bsd-3-clause |
kdebrab/pandas | pandas/core/panel.py | 1 | 54907 | """
Contains data structures designed for manipulating panel (3-dimensional) data
"""
# pylint: disable=E1103,W0231,W0212,W0621
from __future__ import division
import numpy as np
import warnings
from pandas.core.dtypes.cast import (
infer_dtype_from_scalar,
cast_scalar_to_array,
maybe_cast_item)
from panda... | bsd-3-clause |
pcrumley/Iseult | src/phase_plots.py | 1 | 50141 | #!/usr/bin/env pythonw
import tkinter as Tk
from tkinter import ttk
import matplotlib
import numpy as np
import numpy.ma as ma
import new_cmaps
from new_cnorms import PowerNormWithNeg
from Numba2DHist import Fast2DHist, Fast2DWeightedHist, vecLog10Norm
import matplotlib.colors as mcolors
import matplotlib.gridspec as g... | gpl-3.0 |
Patrick-Cole/pygmi | pygmi/mt/dataprep.py | 1 | 56454 | # -----------------------------------------------------------------------------
# Name: dataprep.py (part of PyGMI)
#
# Author: Patrick Cole
# E-Mail: pcole@geoscience.org.za
#
# Copyright: (c) 2019 Council for Geoscience
# Licence: GPL-3.0
#
# This file is part of PyGMI
#
# PyGMI is free softwar... | gpl-3.0 |
UDST/urbanaccess | urbanaccess/tests/test_gtfs_network.py | 1 | 71992 | import pytest
import os
import time
import glob
import pandas as pd
import numpy as np
import urbanaccess.gtfs.network as gtfs_network
import urbanaccess.gtfs.load as gtfs_load
from urbanaccess.network import urbanaccess_network
from urbanaccess.gtfs.gtfsfeeds_dataframe import urbanaccess_gtfs_df
@pytest.fixture
def... | agpl-3.0 |
jmontoyam/mne-python | mne/viz/ica.py | 3 | 37420 | """Functions to plot ICA specific data (besides topographies)
"""
from __future__ import print_function
# Authors: Denis Engemann <denis.engemann@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: Simplified BSD
from functools... | bsd-3-clause |
trsheph/SynBioStandardizer | SynSubtilis2/genestand2.py | 1 | 46296 | #####
#
# Synthetic Biology Gene Standardizer
# Copyright (c) 2015, Tyson R. Shepherd, PhD
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the abo... | bsd-2-clause |
yousrabk/mne-python | mne/preprocessing/maxwell.py | 1 | 54691 | # -*- coding: utf-8 -*-
# Authors: Mark Wronkiewicz <wronk.mark@gmail.com>
# Eric Larson <larson.eric.d@gmail.com>
# Jussi Nurminen <jnu@iki.fi>
# License: BSD (3-clause)
from copy import deepcopy
import numpy as np
from scipy import linalg
from math import factorial
from os import path as op
from... | bsd-3-clause |
harisbal/pandas | pandas/core/frame.py | 1 | 295341 | # pylint: disable=E1101
# pylint: disable=W0212,W0703,W0622
"""
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to... | bsd-3-clause |
credp/lisa | lisa/analysis/functions.py | 1 | 32267 | # SPDX-License-Identifier: Apache-2.0
#
# Copyright (C) 2015, ARM Limited and contributors.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | apache-2.0 |
liangfok/controlit_demos | dreamer_controlit_demos/nodes/Demo9_CARL_Telemanipulation.py | 1 | 122162 | #!/usr/bin/env python
'''
Enables users to telemanipulate Dreamer's end effectors via CARL.
Uses WBOSC configured with due end-effector 5DOF control.
-----------------
Dependency notes:
If you're using Python 2.7, you need to install Python's enum package.
Download it from here: https://pypi.python.org/pypi/enum34#... | lgpl-2.1 |
ycaihua/scikit-learn | sklearn/feature_extraction/tests/test_text.py | 2 | 34107 | from __future__ import unicode_literals
import warnings
from sklearn.feature_extraction.text import strip_tags
from sklearn.feature_extraction.text import strip_accents_unicode
from sklearn.feature_extraction.text import strip_accents_ascii
from sklearn.feature_extraction.text import HashingVectorizer
from sklearn.fe... | bsd-3-clause |
desihub/desispec | py/desispec/fluxcalibration.py | 1 | 63206 | """
desispec.fluxcalibration
========================
Flux calibration routines.
"""
from __future__ import absolute_import
import numpy as np
from .resolution import Resolution
from .linalg import cholesky_solve, cholesky_solve_and_invert, spline_fit
from .interpolation import resample_flux
from desiutil.log import g... | bsd-3-clause |
lfairchild/PmagPy | pmagpy_tests/test_contribution_builder.py | 1 | 32678 | #!/usr/bin/env python
import unittest
import os
import sys
import numpy as np
import pandas as pd
from pmagpy import pmag
from pmagpy import ipmag
from pmagpy import contribution_builder as cb
from pmagpy import data_model3 as data_model
from pmagpy import controlled_vocabularies3 as cv
# set constants
WD = pmag.get... | bsd-3-clause |
phobson/statsmodels | statsmodels/tsa/statespace/tests/test_representation.py | 1 | 44585 | """
Tests for python wrapper of state space representation and filtering
Author: Chad Fulton
License: Simplified-BSD
References
----------
Kim, Chang-Jin, and Charles R. Nelson. 1999.
"State-Space Models with Regime Switching:
Classical and Gibbs-Sampling Approaches with Applications".
MIT Press Books. The MIT Press... | bsd-3-clause |
lucidfrontier45/scikit-learn | sklearn/metrics/metrics.py | 1 | 52065 | """Utilities to evaluate the predictive performance of models
Functions named as ``*_score`` return a scalar value to maximize: the higher
the better
Function named as ``*_error`` or ``*_loss`` return a scalar value to minimize:
the lower the better
"""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# ... | bsd-3-clause |
flightgong/scikit-learn | sklearn/metrics/tests/test_metrics.py | 1 | 104442 | from __future__ import division, print_function
import numpy as np
from functools import partial
from itertools import product
import warnings
from sklearn import datasets
from sklearn import svm
from sklearn import ensemble
from sklearn.preprocessing import LabelBinarizer, MultiLabelBinarizer
from sklearn.datasets ... | bsd-3-clause |
madphysicist/numpy | numpy/core/fromnumeric.py | 2 | 121991 | """Module containing non-deprecated functions borrowed from Numeric.
"""
import functools
import types
import warnings
import numpy as np
from . import multiarray as mu
from . import overrides
from . import umath as um
from . import numerictypes as nt
from ._asarray import asarray, array, asanyarray
from .multiarray ... | bsd-3-clause |
nschloe/matplotlib2tikz | matplotlib2tikz/axes.py | 1 | 31467 | # -*- coding: utf-8 -*-
#
import matplotlib as mpl
import numpy
from matplotlib.backends import backend_pgf as mpl_backend_pgf
from . import color
class Axes(object):
def __init__(self, data, obj):
"""Returns the PGFPlots code for an axis environment.
"""
self.content = []
# Are ... | mit |
UT-CWE/Hyospy | Hyospy_ensemble/lib/SUNTANS/SUNTANS/suntrack.py | 1 | 49700 | # -*- coding: utf-8 -*-
"""
SUNTANS particle tracking
Created on Wed Apr 17 09:54:48 2013
@author: mrayson
"""
from sunpy import Spatial, Grid
import othertime
#from trisearch import TriSearch
from gridsearch import GridSearch
from datetime import datetime,timedelta
from scipy import spatial, sparse
import numpy a... | mit |
tdda/tdda | tdda/referencetest/referencetest.py | 1 | 37028 | # -*- coding: utf-8 -*-
"""
"""
from __future__ import absolute_import
from __future__ import print_function
from __future__ import division
import os
import sys
import tempfile
from tdda.referencetest.checkpandas import PandasComparison
from tdda.referencetest.checkfiles import FilesComparison
# DEFAULT_FAIL_DIR... | mit |
tskisner/pytoast | pipelines/toast_ground_sim_simple.py | 1 | 42388 | #!/usr/bin/env python3
# Copyright (c) 2015-2018 by the parties listed in the AUTHORS file.
# All rights reserved. Use of this source code is governed by
# a BSD-style license that can be found in the LICENSE file.
from toast.mpi import MPI, finalize
import os
import sys
import re
import argparse
import pickle
from... | bsd-2-clause |
brookehus/msmbuilder | msmbuilder/featurizer/featurizer.py | 1 | 59461 | # Author: Kyle A. Beauchamp <kyleabeauchamp@gmail.com>
# Contributors: Robert McGibbon <rmcgibbo@gmail.com>,
# Matthew Harrigan <matthew.p.harrigan@gmail.com>
# Brooke Husic <brookehusic@gmail.com>,
# Muneeb Sultan <msultan@stanford.edu>
# Copyright (c) 2016, Stanford Universit... | lgpl-2.1 |
theislab/scvelo | scvelo/tools/dynamical_model.py | 1 | 47085 | from .. import settings
from .. import logging as logg
from ..preprocessing.moments import get_connectivities
from .utils import make_unique_list, test_bimodality
from .dynamical_model_utils import BaseDynamics, linreg, convolve, tau_inv, unspliced
from typing import Any, Union, Callable, Optional, Sequence
from threa... | bsd-3-clause |
UNH-CORE/2015-09-24-turbine-test-bed-demo | py_2015_09_24_turbine_test_bed_demo/processing.py | 1 | 30642 | # -*- coding: utf-8 -*-
"""
This module contains classes and functions for processing data.
"""
from __future__ import division, print_function
import numpy as np
from pxl import timeseries as ts
from pxl.timeseries import loadhdf
import matplotlib.pyplot as plt
import multiprocessing as mp
import scipy.stats
from sci... | mit |
kthyng/octant | octant/grid.py | 1 | 42018 | # encoding: utf-8
'''Tools for creating and working with Arikawa C-Grids'''
__docformat__ = "restructuredtext en"
import os
import sys
import ctypes
import cPickle
from warnings import warn
from copy import deepcopy
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.artist import Artist
from matplotli... | bsd-3-clause |
nmartensen/pandas | pandas/core/internals.py | 1 | 182264 | import copy
from warnings import catch_warnings
import itertools
import re
import operator
from datetime import datetime, timedelta, date
from collections import defaultdict
from functools import partial
import numpy as np
from pandas.core.base import PandasObject
from pandas.core.dtypes.dtypes import (
Extensio... | bsd-3-clause |
Traecp/MCA_GUI | RSM_GUI_win_v1.1.7.py | 2 | 73374 | #!/usr/bin/python
# -*- coding: utf-8 -*-
import numpy as np
import scipy.ndimage
from scipy import stats
from scipy.fftpack import fft, fftfreq, fftshift
import os, sys
import gc
from os import listdir
from os.path import isfile,join
import gtk
import matplotlib as mpl
import matplotlib.pyplot as plt
#mpl.use('GtkAgg'... | gpl-2.0 |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/io/tests/test_stata.py | 1 | 48615 | # -*- coding: utf-8 -*-
# pylint: disable=E1101
from datetime import datetime
import datetime as dt
import os
import warnings
import nose
import struct
import sys
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
from pandas.compat import iterkeys
from pandas.core.frame import DataFra... | mit |
Kate-Willett/Climate_Explorer | PYTHON/MakeAreaAvgTS.py | 1 | 30299 | # PYTHON 3
#
# Author: Kate Willett
# Created: 4 March 2019
# Last update: 15 April 2019
# Location: /data/local/hadkw/HADCRUH2/UPDATE2014/PROGS/PYTHON/
# GitHub: https://github.com/Kate-Willett/PYTHON
# -----------------------
# CODE PURPOSE AND OUTPUT
# -----------------------
# This code reads in monthly mean... | cc0-1.0 |
sg0/Elemental | include/El/lapack_like/spectral.py | 1 | 60508 | #
# Copyright (c) 2009-2015, Jack Poulson
# All rights reserved.
#
# This file is part of Elemental and is under the BSD 2-Clause License,
# which can be found in the LICENSE file in the root directory, or at
# http://opensource.org/licenses/BSD-2-Clause
#
from ..core import *
from ..blas_like import Copy, Entry... | bsd-3-clause |
heide-support/HEIDE | HEIDE/src/heide.py | 2 | 31101 | # Copyright (C) 2015 Grant Frame
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program i... | gpl-2.0 |
jjtoharia/KaggleOutbrain | python/lstm.py | 1 | 47216 | # -*- coding: utf-8 -*-
# NOTA: Arrancar desde /home/jjtoharia/ con:
# source kaggle/bin/activate
# [Python] - python -i kaggle/Outbrain/lstm.py [seq_len [iteraciones [maxNumFichs [b_guardarDatos]]]]
# [pyspark] - spark-submit --driver-memory 4G kaggle/Outbrain/lstm_entrenar_RDD.py [seq_len [iteraciones [max... | mit |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/io/tests/test_sql.py | 1 | 105456 | """SQL io tests
The SQL tests are broken down in different classes:
- `PandasSQLTest`: base class with common methods for all test classes
- Tests for the public API (only tests with sqlite3)
- `_TestSQLApi` base class
- `TestSQLApi`: test the public API with sqlalchemy engine
- `TestSQLiteFallbackApi`: t... | mit |
dingocuster/scikit-learn | sklearn/linear_model/least_angle.py | 1 | 53462 | """
Least Angle Regression algorithm. See the documentation on the
Generalized Linear Model for a complete discussion.
"""
from __future__ import print_function
# Author: Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux
#
# License: BSD 3 ... | bsd-3-clause |
anntzer/scikit-learn | sklearn/decomposition/_dict_learning.py | 2 | 60539 | """ Dictionary learning.
"""
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD 3 clause
import time
import sys
import itertools
import warnings
from math import ceil
import numpy as np
from scipy import linalg
from joblib import Parallel, effective_n_jobs
from ..base import BaseEstimator, Tr... | bsd-3-clause |
pizzathief/numpy | numpy/linalg/linalg.py | 3 | 86155 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
madphysicist/numpy | numpy/core/code_generators/ufunc_docstrings.py | 1 | 106323 | """
Docstrings for generated ufuncs
The syntax is designed to look like the function add_newdoc is being
called from numpy.lib, but in this file add_newdoc puts the docstrings
in a dictionary. This dictionary is used in
numpy/core/code_generators/generate_umath.py to generate the docstrings
for the ufuncs in numpy.co... | bsd-3-clause |
wilsonkichoi/zipline | zipline/testing/fixtures.py | 1 | 47143 | from abc import ABCMeta, abstractproperty
import sqlite3
from unittest import TestCase
from contextlib2 import ExitStack
from logbook import NullHandler, Logger
from nose_parameterized import parameterized
from pandas.util.testing import assert_series_equal
from six import with_metaclass
from toolz import flip
import ... | apache-2.0 |
zhouyao1994/incubator-superset | superset/connectors/druid/models.py | 1 | 60171 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
ryfeus/lambda-packs | HDF4_H5_NETCDF/source2.7/numpy/linalg/linalg.py | 3 | 82419 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | mit |
UCL-InfoSec/loopix | aws/fabfile.py | 1 | 50998 | from fabric.api import env, sudo, run, settings, cd, local
from fabric.decorators import runs_once, roles, parallel, hosts
from fabric.operations import get, put
from fabric.tasks import execute
import fabric.contrib.files
import boto3
import sys
import os
import sys
import sqlite3
import random
from binascii import he... | bsd-2-clause |
ganong123/HARK | gn/default_model.py | 1 | 52545 | # -*- coding: utf-8 -*-
"""
Created on Mon Jun 20 15:55:59 2016
@author: ganong
"""
import os
os.environ["R_HOME"] = "/Library/Frameworks/R.framework/Resources"
os.chdir("/Users/ganong/repo/HARK-comments-and-cleanup/gn")
out_path = "~/dropbox/hampra/out2/"
import settings
import sys
sys.path.insert(0,'../')
sys.path.... | apache-2.0 |
ToFuProject/tofu | tofu/tests/tests01_geom/test_01_GG.py | 1 | 76291 | """
This module contains tests for tofu.geom in its structured version
"""
# External modules
import numpy as np
# ToFu-specific
import tofu.geom._GG as GG
from .testing_tools import compute_ves_norm
# header
VerbHead = 'tofu.geom.test_01_GG'
#######################################################
#
# Setup an... | mit |
luwei0917/awsemmd_script | pyCodeLib.py | 1 | 263756 | import time
import subprocess
import os
import math
import sys
import functools
import itertools
import numpy as np
from scipy import stats
import random
from functools import partial
import datetime
import pandas as pd
from Bio.PDB.Polypeptide import three_to_index
from Bio.PDB.Polypeptide import index_to_three
# MY... | mit |
guaix-ucm/django-megaraetc | etc/numeric.py | 1 | 39581 | #
# Copyright 2010-2016 Universidad Complutense de Madrid (Spain)
#
# This file is part of Megara Exposure Time Calculator
#
# Megara ETC is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3... | gpl-3.0 |
MTgeophysics/mtpy | mtpy/imaging/plotpseudosection.py | 1 | 47677 | # -*- coding: utf-8 -*-
"""
Created on Thu May 30 18:39:58 2013
@author: jpeacock-pr
"""
#==============================================================================
import matplotlib.pyplot as plt
import numpy as np
import os
import matplotlib.colorbar as mcb
import matplotlib.colors as colors
import mtpy.imagin... | gpl-3.0 |
jniediek/mne-python | mne/channels/channels.py | 1 | 35979 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
import os
... | bsd-3-clause |
lmzintgraf/MultiMAuS | data/features/aggregate_features.py | 1 | 31068 | """
This file provides a class that can be ''trained'' on training data, and then produce new
aggregate features for both training and test data. ''Training'' this class simply consists
of it memorizing various statistics.
Features constructed by this class are primarily inspired by:
"A data mining based system for c... | mit |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_New_Server_0715_2015_pre_activation_rectifier.py | 2 | 47528 |
# coding: utf-8
# In[5]:
import sys, os
sys.path.append('../../../libs/')
sys.path.append('../libs/')
sys.path.append('../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import csv
from dateutil import parser
from datetime import timede... | gpl-2.0 |
plotly/python-api | packages/python/plotly/plotly/graph_objs/treemap/_marker.py | 1 | 37843 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Marker(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "treemap"
_path_str = "treemap.marker"
_valid_props = {
"autocolorscale",
"ca... | mit |
cbertinato/pandas | pandas/tests/test_base.py | 1 | 50791 | from datetime import datetime, timedelta
from io import StringIO
import re
import sys
import numpy as np
import pytest
from pandas._libs.tslib import iNaT
from pandas.compat import PYPY
from pandas.compat.numpy import np_array_datetime64_compat
from pandas.core.dtypes.common import (
is_datetime64_dtype, is_date... | bsd-3-clause |
AlexisEidelman/Til | til/data/data/Patrimoine.py | 1 | 42004 | # -*- coding:utf-8 -*-
'''
Created on 2 août 2013
@author: a.eidelman
'''
import os
import numpy as np
from pandas import merge, DataFrame, Series, concat, read_csv
import pdb
# 1- Importation des classes/librairies/tables nécessaires à l'importation des
# données de l'enquête Patrimoine
from til.data.DataTil impo... | gpl-3.0 |
timothydmorton/VESPA | vespa/stars/populations.py | 1 | 76295 | from __future__ import print_function, division
import logging
import re, os, os.path
on_rtd = os.environ.get('READTHEDOCS') == 'True'
if not on_rtd:
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
import scipy.stats as stats
import numpy.random as rand
from astropy im... | mit |
plotly/python-api | packages/python/plotly/plotly/graph_objs/_scatter.py | 1 | 107803 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Scatter(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "scatter"
_valid_props = {
"cliponaxis",
"connectgaps",
"customdata",
"c... | mit |
luisera/gmpe-smtk | smtk/trellis/trellis_plots.py | 1 | 30238 | #!/usr/bin/env/python
# LICENSE
#
# Copyright (c) 2010-2014, GEM Foundation, G. Weatherill, M. Pagani,
# D. Monelli.
#
# The Hazard Modeller's Toolkit is free software: you can redistribute
# it and/or modify it under the terms of the GNU Affero General Public
# License as published by the Free Software Foundation, eit... | agpl-3.0 |
renhaocui/activityExtractor | runHybrid.py | 1 | 58548 | import json, re, sys, pickle
import numpy as np
from keras.layers import Dense, LSTM, Input, concatenate, GRU, Lambda, Flatten, GRU
from keras.layers.embeddings import Embedding
from keras.models import Model
from keras.preprocessing import sequence
from keras.preprocessing.text import Tokenizer
from keras.utils import... | mit |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/pandas/tseries/tests/test_timezones.py | 1 | 34781 | # pylint: disable-msg=E1101,W0612
from datetime import datetime, time, timedelta, tzinfo, date
import sys
import os
import nose
import numpy as np
import pytz
from pandas import (Index, Series, TimeSeries, DataFrame, isnull,
date_range, Timestamp)
from pandas import DatetimeIndex, Int64Index, to_... | gpl-3.0 |
bolozna/EDENetworks | eden_analyzer_v2.py | 1 | 38887 | """
EDENetworks, a genetic network analyzer
Copyright (C) 2011 Aalto University
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version... | gpl-2.0 |
fabiansinz/pipeline | python/pipeline/reso.py | 1 | 72697 | """ Schemas for resonant scanners."""
import datajoint as dj
from datajoint.jobs import key_hash
import matplotlib.pyplot as plt
import numpy as np
import scanreader
from . import experiment, notify, shared
from .utils import galvo_corrections, signal, quality, mask_classification, performance
from .exceptions import ... | lgpl-3.0 |
darcamo/pyphysim | pyphysim/channels/fading.py | 1 | 49614 | #!/usr/bin/env python
import math
from typing import List, Optional, Tuple, Union, cast
import numpy as np
from ..util.conversion import dB2Linear, linear2dB
from .fading_generators import JakesSampleGenerator, RayleighSampleGenerator
try:
import matplotlib.pyplot as plt
# from mpl_toolkits.mplot3d import ... | gpl-2.0 |
jreback/pandas | pandas/tests/indexes/datetimes/test_timezones.py | 1 | 44979 | """
Tests for DatetimeIndex timezone-related methods
"""
from datetime import date, datetime, time, timedelta, tzinfo
import dateutil
from dateutil.tz import gettz, tzlocal
import numpy as np
import pytest
import pytz
from pandas._libs.tslibs import conversion, timezones
import pandas.util._test_decorators as td
imp... | bsd-3-clause |
jakereimer/pipeline | python/pipeline/stack.py | 2 | 135867 | """ Schemas for structural stacks. """
import datajoint as dj
from datajoint.jobs import key_hash
import matplotlib.pyplot as plt
import numpy as np
import scanreader
from scipy import signal
from scipy import ndimage
from scipy import optimize
import itertools
from . import experiment, notify, shared, reso, meso
anat... | lgpl-3.0 |
SasView/sasmodels | sasmodels/jitter.py | 1 | 55967 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Jitter Explorer
===============
Application to explore orientation angle and angular dispersity.
From the command line::
# Show docs
python -m sasmodels.jitter --help
# Guyou projection jitter, uniform over 20 degree theta and 10 in phi
python -m sas... | bsd-3-clause |
unnikrishnankgs/va | venv/lib/python3.5/site-packages/matplotlib/tests/test_axes.py | 2 | 156654 | from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
from six.moves import xrange
from itertools import chain, product
from distutils.version import LooseVersion
import io
from nose.tools import assert_equal, assert_raises, assert_false, assert_true
f... | bsd-2-clause |
sassoftware/sas-viya-programming | python/automate-modeling-at-scale/params_box.py | 1 | 46698 | # Jupyter widget for visual input of model parameters
import ipywidgets as widgets
from IPython.display import display
import copy
from ipywidgets import Layout
from xgboost import XGBClassifier
from sklearn.metrics import roc_curve
from sklearn.metrics import accuracy_score
import tensorflow as tf
from imblearn.over... | apache-2.0 |
anntzer/scikit-learn | sklearn/cluster/_kmeans.py | 1 | 78907 | """K-means clustering."""
# Authors: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Thomas Rueckstiess <ruecksti@in.tum.de>
# James Bergstra <james.bergstra@umontreal.ca>
# Jan Schlueter <scikit-learn@jan-schlueter.de>
# Nelle Varoquaux
# Peter Prettenhofer <peter.pretten... | bsd-3-clause |
xuewei4d/scikit-learn | sklearn/model_selection/_search_successive_halving.py | 5 | 40284 | from math import ceil, floor, log
from abc import abstractmethod
from numbers import Integral
import numpy as np
from ._search import _check_param_grid
from ._search import BaseSearchCV
from . import ParameterGrid, ParameterSampler
from ..utils.validation import _num_samples
from ..base import is_classifier
from ._spl... | bsd-3-clause |
baharmon/tangible_topography | blind_review/analysis.py | 1 | 77919 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
@brief: spatial analysis for the tangible topography experiment
This program is free software under the GNU General Public License (>=v2).
"""
import os
import sys
import csv
import atexit
import grass.script as gscript
from grass.exceptions import CalledModuleError
... | gpl-2.0 |
winklerand/pandas | pandas/core/base.py | 1 | 39014 | """
Base and utility classes for pandas objects.
"""
import warnings
from pandas import compat
from pandas.compat import builtins
import numpy as np
from pandas.core.dtypes.missing import isna
from pandas.core.dtypes.generic import ABCDataFrame, ABCSeries, ABCIndexClass
from pandas.core.dtypes.common import (
is_o... | bsd-3-clause |
jaeilepp/eggie | mne/io/base.py | 1 | 73937 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from math import floor, ceil
import copy
from copy import... | bsd-2-clause |
nmartensen/pandas | pandas/core/reshape/reshape.py | 1 | 46504 | # pylint: disable=E1101,E1103
# pylint: disable=W0703,W0622,W0613,W0201
from pandas.compat import range, text_type, zip
from pandas import compat
import itertools
import re
import numpy as np
from pandas.core.dtypes.common import (
_ensure_platform_int,
is_list_like, is_bool_dtype,
needs_i8_conversion)
fr... | bsd-3-clause |
cdeboever3/cdpybio | cdpybio/star.py | 1 | 32360 | import copy
import os
import pdb
import numpy as np
import pandas as pd
# Column labels for SJ.out.tab.
COLUMN_NAMES = ('chrom', 'start', 'end', 'strand',
'intron_motif', 'annotated',
'unique_junction_reads', 'multimap_junction_reads',
'max_overhang')
# Subset of column... | mit |
alberlab/alabtools | alabtools/api.py | 1 | 40698 | # Copyright (C) 2017 University of Southern California and
# Nan Hua
#
# Authors: Nan Hua
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the Licen... | gpl-3.0 |
mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/pandas/tests/io/test_packers.py | 3 | 32058 | import pytest
from warnings import catch_warnings
import os
import datetime
import numpy as np
import sys
from distutils.version import LooseVersion
from pandas import compat
from pandas.compat import u, PY3
from pandas import (Series, DataFrame, Panel, MultiIndex, bdate_range,
date_range, period_... | mit |
malmiron/incubator-airflow | airflow/contrib/hooks/bigquery_hook.py | 1 | 79737 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
Erotemic/vtool | vtool_ibeis/matching.py | 1 | 72539 | # -*- coding: utf-8 -*-
"""
vt
python -m utool.util_inspect check_module_usage --pat="matching.py"
"""
from __future__ import absolute_import, division, print_function
from vtool_ibeis import _rhomb_dist
import six
import warnings
import pandas as pd
import utool as ut
import ubelt as ub
import numpy as np
imp... | apache-2.0 |
IntelLabs/hpat | sdc/timsort.py | 1 | 42331 | # *****************************************************************************
# Copyright (c) 2020, Intel Corporation All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# Redistributions of sou... | bsd-2-clause |
Archman/beamline | beamline/element.py | 1 | 61470 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
""" This module defines all kinds of magnet components/elements.
.. Author: Tong Zhang
.. Created : 2016-03-22
"""
import json
import epics
import matplotlib.patches as patches
import matplotlib.pyplot as plt
import numpy as np
from matplotlib.path import Path
from ... | mit |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/io/excel.py | 1 | 55111 | """
Module parse to/from Excel
"""
# ---------------------------------------------------------------------
# ExcelFile class
from datetime import datetime, date, time, MINYEAR
import os
import abc
import numpy as np
from pandas.core.frame import DataFrame
from pandas.io.parsers import TextParser
from pandas.io.commo... | mit |
sriki18/scipy | scipy/stats/_distn_infrastructure.py | 1 | 118787 | #
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
from scipy._lib.six import string_types, exec_, PY3
from scipy._lib._util import getargspec_no_self as _getargspec
import sys
import keyword
import r... | bsd-3-clause |
openwns/wrowser | openwns/wrowser/Windows.py | 1 | 67016 | ###############################################################################
# This file is part of openWNS (open Wireless Network Simulator)
# _____________________________________________________________________________
#
# Copyright (C) 2004-2007
# Chair of Communication Networks (ComNets)
# Kopernikusstr. 16, D-... | gpl-2.0 |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/IPython/core/interactiveshell.py | 2 | 131375 | # -*- coding: utf-8 -*-
"""Main IPython class."""
#-----------------------------------------------------------------------------
# Copyright (C) 2001 Janko Hauser <jhauser@zscout.de>
# Copyright (C) 2001-2007 Fernando Perez. <fperez@colorado.edu>
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distribu... | gpl-3.0 |
chinageology/GeoPython | geopytool/CustomClass.py | 1 | 61992 | version = '0.8.19.5.103'
date = '2019-8-15'
dpi = 128
# coding:utf-8
from geopytool.ImportDependence import *
# from geopytool.TableViewer import TableViewer
class GrowingTextEdit(QtWidgets.QTextEdit):
def __init__(self, *args, **kwargs):
super(GrowingTextEdit, self).__init__(*args, **kwargs)
... | gpl-3.0 |
geopandas/geopandas | geopandas/plotting.py | 1 | 36434 | import warnings
import numpy as np
import pandas as pd
from pandas.plotting import PlotAccessor
import geopandas
from distutils.version import LooseVersion
from ._decorator import doc
def deprecated(new):
"""Helper to provide deprecation warning."""
def old(*args, **kwargs):
warnings.warn(
... | bsd-3-clause |
ryfeus/lambda-packs | Spacy/source2.7/tqdm/_tqdm.py | 1 | 47049 | """
Customisable progressbar decorator for iterators.
Includes a default (x)range iterator printing to stderr.
Usage:
>>> from tqdm import trange[, tqdm]
>>> for i in trange(10): #same as: for i in tqdm(xrange(10))
... ...
"""
from __future__ import absolute_import
# integer division / : float, // : int
from... | mit |
meta-it/misc-addons | sugarcrm_migration/import_sugarcrm.py | 1 | 46184 | # -*- coding: utf-8 -*-
import logging
_logger = logging.getLogger(__name__)
try:
import MySQLdb
import MySQLdb.cursors
from pandas import merge, DataFrame
except ImportError:
pass
from openerp.addons.import_framework.import_base import import_base, create_childs
from openerp.addons.import_framework.... | lgpl-3.0 |
niknow/scipy | scipy/stats/stats.py | 2 | 169920 | # Copyright (c) Gary Strangman. All rights reserved
#
# Disclaimer
#
# This software is provided "as-is". There are no expressed or implied
# warranties of any kind, including, but not limited to, the warranties
# of merchantability and fitness for a given application. In no event
# shall Gary Strangman be liable fo... | bsd-3-clause |
Ciaran1981/geospatial-learn | geospatial_learn/shape.py | 1 | 66369 | # -*- coding: utf-8 -*-
"""
The shape module.
Description
-----------
This module contains various functions for the writing of data in OGR vector
formats.
The functions are mainly concerned with writing geometric or pixel based attributes,
with the view to them being classified in the learning module
"""
from s... | gpl-3.0 |
sonnyhu/scikit-learn | sklearn/linear_model/coordinate_descent.py | 1 | 81068 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
from abc import ABCMeta, abstractmethod
import n... | bsd-3-clause |
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