repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
celiafish/VisTrails | vistrails/packages/matplotlib/artists.py | 2 | 230215 | from vistrails.core.modules.vistrails_module import Module
from bases import MplProperties
import matplotlib.artist
import matplotlib.cbook
def translate_color(c):
return c.tuple
def translate_MplLine2DProperties_marker(val):
translate_dict = {'caretright': 5, 'star': '*', 'point': '.', 'mathtext': '$...... | bsd-3-clause |
zohannn/motion_manager | scripts/old/task_1_reaching/var_0/predicting_task_1_var_0_20k.py | 1 | 136430 | #!/usr/bin/env python3
import sys
import pandas as pd
from sklearn import decomposition
from sklearn import metrics
from sklearn.externals import joblib
import matplotlib.pyplot as plt
import tensorflow as tf
import numpy as np
import math
from random import randint
# HUPL
from HUPL.learner import preprocess_featur... | mit |
cschenck/blender_sim | fluid_sim_deps/blender-2.69/2.69/python/lib/python3.3/site-packages/numpy/lib/npyio.py | 1 | 65349 | __all__ = ['savetxt', 'loadtxt', 'genfromtxt', 'ndfromtxt', 'mafromtxt',
'recfromtxt', 'recfromcsv', 'load', 'loads', 'save', 'savez',
'savez_compressed', 'packbits', 'unpackbits', 'fromregex', 'DataSource']
import numpy as np
from . import format
import sys
import os
import re
import sys
import ... | gpl-3.0 |
xuewei4d/scikit-learn | sklearn/linear_model/tests/test_ridge.py | 4 | 49798 | import numpy as np
import scipy.sparse as sp
from scipy import linalg
from itertools import product
import pytest
from sklearn.utils._testing import assert_almost_equal
from sklearn.utils._testing import assert_allclose
from sklearn.utils._testing import assert_array_almost_equal
from sklearn.utils._testing import as... | bsd-3-clause |
czhengsci/pymatgen | pymatgen/io/lammps/data.py | 2 | 45838 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, print_function, unicode_literals, \
absolute_import
from collections import OrderedDict
from io import StringIO
import itertools
import re
import warnings
import numpy as ... | mit |
thekerrlab/netpyne | netpyne/metadata/metadata.py | 1 | 131863 | from __future__ import unicode_literals
from __future__ import print_function
from __future__ import division
from __future__ import absolute_import
from future import standard_library
standard_library.install_aliases()
metadata = {
# ------------------------------------------------------------------------------------... | mit |
eickenberg/scikit-learn | sklearn/feature_extraction/text.py | 1 | 49422 | # -*- coding: utf-8 -*-
# Authors: Olivier Grisel <olivier.grisel@ensta.org>
# Mathieu Blondel <mathieu@mblondel.org>
# Lars Buitinck <L.J.Buitinck@uva.nl>
# Robert Layton <robertlayton@gmail.com>
# Jochen Wersdörfer <jochen@wersdoerfer.de>
# Roman Sinayev <roman.sinayev@gma... | bsd-3-clause |
bert9bert/statsmodels | statsmodels/tsa/stattools.py | 2 | 44980 | """
Statistical tools for time series analysis
"""
from statsmodels.compat.python import (iteritems, range, lrange, string_types,
lzip, zip, long)
from statsmodels.compat.scipy import _next_regular
import numpy as np
from numpy.linalg import LinAlgError
from scipy import stats
f... | bsd-3-clause |
Gaia3D/GeepsSpatialStatistic | Widget_MoransI.py | 1 | 36993 | # -*- coding: utf-8 -*-
from PyQt4.QtCore import *
from PyQt4.QtGui import *
import os
from pysal import W, Moran, Moran_Local
import numpy as np
from qgis.core import *
from Utility import *
from gui.ui_form_morans_i import Ui_Form_Parameter as Ui_Form
import matplotlib.pyplot as plt
from xlwt import Workbook
class ... | apache-2.0 |
drykunov/MEGT | evgt.py | 1 | 40120 |
# To-do
# Write an evolutionary optimization algorithm
# Write a multi-modal optimization
# [done] Develop easy to follow outputs
# Add multi-thread workflows (use SCOOP)
# Add docstrings
import numpy as np
import warnings
import math
import copy
import textwrap
from collections import OrderedDict
import logging
from... | gpl-3.0 |
bulik/ldsc | munge_sumstats.py | 1 | 30281 | #!/usr/bin/env python
from __future__ import division
import pandas as pd
import numpy as np
import os
import sys
import traceback
import gzip
import bz2
import argparse
from scipy.stats import chi2
from ldscore import sumstats
from ldsc import MASTHEAD, Logger, sec_to_str
import time
np.seterr(invalid='ignore')
try:
... | gpl-3.0 |
atmtools/typhon | typhon/plots/cm/_cmocean.py | 1 | 87751 | # -*- coding: utf-8 -*-
"""
It is a subset of the cmocean package [0] provided by Kristen M. Thyng.
The MIT License (MIT)
Copyright (c) 2015 Kristen M. Thyng
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in t... | mit |
ahaldane/numpy | numpy/lib/recfunctions.py | 1 | 55570 | """
Collection of utilities to manipulate structured arrays.
Most of these functions were initially implemented by John Hunter for
matplotlib. They have been rewritten and extended for convenience.
"""
from __future__ import division, absolute_import, print_function
import sys
import itertools
import numpy as np
im... | bsd-3-clause |
Winterflower/mdf | mdf/nodes.py | 1 | 70372 | import uuid
import itertools
import logging
import inspect
import time
import sys
import cython
import copy
import types
import os
import re
from .parser import tokenize, get_assigned_node_name
from context import MDFContext, MDFNodeBase
from common import DIRTY_FLAGS
# these are cimported in nodes.pxd
# uncomment if ... | mit |
kyleabeauchamp/mdtraj | mdtraj/core/topology.py | 1 | 41793 | ##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2014 Stanford University and the Authors
#
# Authors: Peter Eastman, Robert McGibbon
# Contributors: Kyle A. Beaucha... | lgpl-2.1 |
MTgeophysics/mtpy | mtpy/modeling/modem/plot_response.py | 1 | 123379 | """
==================
ModEM
==================
# Generate files for ModEM
# revised by JP 2017
# revised by AK 2017 to bring across functionality from ak branch
"""
import numpy as np
import os
from matplotlib import pyplot as plt, gridspec as gridspec
from matplotlib.ticker import MultipleLocator
from matplotlib.... | gpl-3.0 |
Andreea-G/Codds_DarkMatter | src/runprogram.py | 1 | 32949 | """
Copyright (c) 2015 Andreea Georgescu
Created on Sat Dec 6 15:32:34 2014
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
... | gpl-2.0 |
merenlab/anvio | anvio/drivers/vmatch.py | 1 | 67296 | # coding utf-8
"""An interface for Vmatch"""
import os
import time
import queue
import shutil
import pandas as pd
import multiprocessing as mp
from collections import defaultdict
import anvio
import anvio.utils as utils
import anvio.terminal as terminal
import anvio.filesnpaths as filesnpaths
from anvio.errors impo... | gpl-3.0 |
jchodera/yank | Yank/utils.py | 1 | 52560 | import os
import re
import sys
import copy
import glob
import json
import shutil
import signal
import pandas
import inspect
import logging
import itertools
import subprocess
import collections
from contextlib import contextmanager
from pkg_resources import resource_filename
import mdtraj
import parmed
import numpy as... | lgpl-3.0 |
cdiazbas/hazel | pyGUI/hazel.py | 2 | 59266 | import sys, os, random
import numpy as np
import i0Allen
from PyQt4.QtCore import *
from PyQt4.QtGui import *
import pyhazel
from ipdb import set_trace as stop
import pickle
import os.path
import matplotlib.pyplot as pl
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.fi... | mit |
ud3sh/coursework | deeplearning.ai/coursera-improving-neural-networks/week3/TensorFlow_Tutorial_v3b.py | 1 | 39226 |
# coding: utf-8
# # TensorFlow Tutorial
#
# Welcome to this week's programming assignment. Until now, you've always used numpy to build neural networks. Now we will step you through a deep learning framework that will allow you to build neural networks more easily. Machine learning frameworks like TensorFlow, Paddle... | unlicense |
luwei0917/awsemmd_script | msa_compute_phis_specific_decoys.py | 1 | 46791 | import os
import sys
import numpy as np
import pandas as pd
from Bio.PDB.Polypeptide import three_to_index
from Bio.PDB.Polypeptide import one_to_three
from Bio.PDB.Polypeptide import three_to_one
import random
import argparse
from functools import partial
import time
# res to index
# index_dic
parameter_folder = "/Use... | mit |
zfrenchee/pandas | pandas/tests/frame/test_constructors.py | 1 | 79109 | # -*- coding: utf-8 -*-
from __future__ import print_function
from datetime import datetime, timedelta
import functools
import itertools
import pytest
from numpy.random import randn
import numpy as np
import numpy.ma as ma
import numpy.ma.mrecords as mrecords
from pandas.core.dtypes.common import is_integer_dtype
... | bsd-3-clause |
jwdegee/2017_eLife | 1_individuals.py | 1 | 243489 | #!/usr/bin/env python
# encoding: utf-8
"""
================================================
Created by Jan Willem de Gee on 2014-06-01.
Copyright (c) 2009 jwdegee. All rights reserved.
================================================
"""
import os, sys, datetime
import subprocess, logging
import scipy as sp
import sc... | mit |
jmball/Automated_PV_Measurement | Python/Data_analysis_and_report_generation_old.py | 1 | 56060 | # This script takes the measurement log files and loads them as Pandas
# DataFrames for manipulation and then plotting.
import argparse
import itertools
import os
from datetime import date, timedelta
from functools import reduce
import matplotlib.dates as mdates
import matplotlib.pyplot as plt
import numpy as np
impo... | mit |
huggingface/transformers | templates/adding_a_new_example_script/{{cookiecutter.directory_name}}/run_{{cookiecutter.example_shortcut}}.py | 1 | 36927 | #!/usr/bin/env python
# coding=utf-8
# Copyright {{cookiecutter.authors}} and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://ww... | apache-2.0 |
oduwa/Pic-Numero | PicNumero/tqdm/_tqdm.py | 2 | 31598 | """
Customisable progressbar decorator for iterators.
Includes a default (x)range iterator printing to stderr.
Usage:
>>> from tqdm import trange[, tqdm]
>>> for i in trange(10): #same as: for i in tqdm(xrange(10))
... ...
"""
# future division is important to divide integers and get as
# a result precise fl... | mit |
winklerand/pandas | pandas/tests/indexes/period/test_ops.py | 1 | 37473 | import pytest
import numpy as np
import pandas as pd
import pandas._libs.tslib as tslib
import pandas.util.testing as tm
import pandas.core.indexes.period as period
from pandas import (DatetimeIndex, PeriodIndex, period_range, Series, Period,
_np_version_under1p10, Index)
from pandas.tests.test_b... | bsd-3-clause |
bxlab/HiFive_Paper | Scripts/HiCLib/mirnylab-hiclib-460c3fbc0f72/build/lib/hiclib/fragmentHiC.py | 2 | 93010 | # (c) 2012 Massachusetts Institute of Technology. All Rights Reserved
# Code written by: Maksim Imakaev (imakaev@mit.edu)
"""
This is a module class for fragment-level Hi-C data analysis.
The base class "HiCdataset" can load, save and merge Hi-C datasets,
perform certain filters, and save binned heatmaps.
Additional c... | bsd-3-clause |
alexhege/Orbital-APSYNSIM | APSYNSIM_v1.3/SCRIPT/relicAPSYNSIM_old.py | 1 | 108142 | #############################################################################
#
# APSYNSIM: A real-time Aperture Synthesis Simulator
#
# Copyright (C) 2014 Ivan Marti-Vidal (Nordic ARC Node, OSO, Sweden)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GN... | gpl-3.0 |
davidsoncolin/IMS | Ops/Mesh.py | 1 | 33815 | import Op, Interface
import IO
import numpy as np
import time
from IO import MAReader
import pyopencl as cl
from GCore import Character
from GCore import SolveIK
class MarkerMesh(Op.Op):
def __init__(self, name='/Marker_Mesh', locations='', filename='', texture='', drawStyle='wire_over_smooth', colour='(1.0, 1.0, 0... | mit |
jmfranck/pyspecdata | pyspecdata/figlist.py | 1 | 34370 | """Contains the figure list class
The figure list gives us three things:
* Automatically handle the display and scaling of nddata units.
* Refer to plots by name, rather than number (matplotlib has a mechanism for this, which we ignore)
* A "basename" allowing us to generate multiple sets of plots for different... | bsd-3-clause |
lcharleux/abapy | abapy/postproc.py | 1 | 108824 | '''
Post Processing
===============
'''
def GetMesh(odb,instance,dti='I'):
'''Retrieves mesh on an instance in an Abaqus Output Database.
:param odb: output database
:type odb: odb object
:param instance: instance name declared in the Abaqus inp file.
:type instance: string
:param dti: int data type... | gpl-2.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/streamtube/_colorbar.py | 1 | 73319 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "streamtube"
_path_str = "streamtube.colorbar"
_valid_props = {
"bgcolor",
... | mit |
Erotemic/ibeis | ibeis/algo/graph/demo.py | 1 | 31743 | # -*- coding: utf-8 -*-
"""
TODO: separate out the tests and make this file just generate the demo data
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import itertools as it
import numpy as np
import utool as ut
from ibeis.algo.graph.state import POSTV, NEGTV, INCMP, UNREV
from i... | apache-2.0 |
qrsforever/workspace | python/learn/thinkbayes/thinkstats2.py | 1 | 70069 | #!/usr/bin/python3
# -*- coding: utf-8 -*-
"""This file contains code for use with "Think Stats" and
"Think Bayes", both by Allen B. Downey, available from greenteapress.com
Copyright 2014 Allen B. Downey
License: GNU GPLv3 http://www.gnu.org/licenses/gpl.html
"""
from __future__ import print_function, division
"""... | mit |
MJuddBooth/pandas | pandas/tests/frame/test_indexing.py | 1 | 132839 | # -*- coding: utf-8 -*-
from __future__ import print_function
from datetime import date, datetime, time, timedelta
from warnings import catch_warnings, simplefilter
import numpy as np
import pytest
from pandas._libs.tslib import iNaT
from pandas.compat import PY2, long, lrange, lzip, map, range, zip
from pandas.co... | bsd-3-clause |
basnijholt/holoviews | holoviews/element/graphs.py | 1 | 32076 | from types import FunctionType
from collections import defaultdict
import param
import numpy as np
from ..core import Dimension, Dataset, Element2D
from ..core.accessors import Redim
from ..core.util import max_range, search_indices
from ..core.operation import Operation
from .chart import Points
from .path import Pa... | bsd-3-clause |
kastnerkyle/speech_density | midify.py | 1 | 32006 | # License: BSD 3-clause
# Authors: Kyle Kastner,
# Pierre Luc Carrier
import numpy as np
import scipy
from numpy.lib.stride_tricks import as_strided
import scipy.signal as sg
from scipy import linalg, fftpack
def mel_to_hz(mels, htk=False):
"""Convert mel bin numbers to frequencies
:usage:
... | bsd-3-clause |
MDAnalysis/mdanalysis | package/MDAnalysis/analysis/legacy/x3dna.py | 1 | 35151 | # -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2017 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | gpl-2.0 |
gfyoung/pandas | pandas/tests/scalar/timedelta/test_arithmetic.py | 1 | 33777 | """
Tests for scalar Timedelta arithmetic ops
"""
from datetime import datetime, timedelta
import operator
import numpy as np
import pytest
from pandas.compat import is_numpy_dev
import pandas as pd
from pandas import NaT, Timedelta, Timestamp, compat, offsets
import pandas._testing as tm
from pandas.core import ops... | bsd-3-clause |
geophysics/mtpy | mtpy/imaging/plotpseudosection.py | 1 | 48915 | # -*- coding: utf-8 -*-
"""
Created on Thu May 30 18:39:58 2013
@author: jpeacock-pr
"""
#==============================================================================
import matplotlib.pyplot as plt
import numpy as np
import os
import matplotlib.colorbar as mcb
import matplotlib.colors as colors
import mtpy.imagin... | gpl-3.0 |
freeman-lab/dask | dask/bag/core.py | 1 | 37159 | from __future__ import absolute_import, division, print_function
import itertools
import math
import tempfile
import inspect
import gzip
import zlib
import bz2
import os
from fnmatch import fnmatchcase
from glob import glob
from collections import Iterable, Iterator, defaultdict
from functools import wraps, partial
... | bsd-3-clause |
abonaca/stream_information | scripts/stream_info/streams.py | 1 | 48705 | from __future__ import division, print_function
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
import astropy
import astropy.units as u
from astropy.constants import G
from astropy.table import Table
import astropy.coordinates as coord
import gala.coordinates as gc
#from stream_info impo... | mit |
rs2/pandas | pandas/tests/test_strings.py | 1 | 133766 | from datetime import datetime, timedelta
import re
import numpy as np
from numpy.random import randint
import pytest
from pandas._libs import lib
import pandas as pd
from pandas import DataFrame, Index, MultiIndex, Series, concat, isna, notna
import pandas._testing as tm
import pandas.core.strings as strings
def a... | bsd-3-clause |
jmmauricio/pypstools | pypstools/tools.py | 1 | 40432 | """ Tools for dealing with power system data and results.
(c) 2015 Juan Manuel Mauricio
"""
import numpy as np
import scipy.linalg
import scipy.integrate
import pandas as pd
import h5py
#from StringIO import StringIO
def dict_to_h5(file_name, dict_in, dict_deepness=3):
''' Saves a dictionary to hdf5 file
... | gpl-3.0 |
laurentperrinet/elasticite | elasticite/elasticite.py | 1 | 36665 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import division, print_function, absolute_import
import os
import numpy as np
import time
try:
#import matplotlib
#matplotlib.use("Agg") # agg-backend, so we can create figures without x-server (no PDF, just PNG etc.)
import matplotlib.pyplot as plt
exce... | mit |
jmmease/pandas | pandas/core/frame.py | 1 | 236565 | """
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | bsd-3-clause |
datasnakes/Datasnakes-Scripts | OrthoEvol/Orthologs/Blast/comparative_genetics.py | 1 | 30749 | """Comparative Genetics"""
# Standard Library
import os
import shutil
import time
import copy
import random
import pkg_resources
from pathlib import Path
# OrthoEvol
from OrthoEvol.Manager.config import data
from OrthoEvol.Manager.management import ProjectManagement
from OrthoEvol.utilities import FullUtilities
from Or... | mit |
jskDr/jamespy_py3 | kgrid_r0.py | 1 | 40662 | """
grid search codes for machine learning
Chemistry toolbox such as RDKit is not used.
"""
from sklearn import model_selection, linear_model, svm, metrics
import numpy as np
import pandas as pd
from operator import itemgetter
import jutil
from jsklearn import binary_model
def gs_np(X, Y, alphas_log=(-3, 3, 7), met... | mit |
ganong123/HARK | ConsumptionSaving/ConsAggShockModel_gn.py | 1 | 33016 | '''
Consumption-saving models with aggregate productivity shocks as well as idiosyn-
cratic income shocks. Currently only contains one microeconomic model with a
basic solver. Also includes a subclass of Market called CobbDouglas economy,
used for solving "macroeconomic" models with aggregate shocks.
'''
#import os
#... | apache-2.0 |
jminardi/mecode | mecode/main.py | 1 | 40261 | """
Mecode
======
### GCode for all
Mecode is designed to simplify GCode generation. It is not a slicer, thus it
can not convert CAD models to 3D printer ready code. It simply provides a
convenient, human-readable layer just above GCode. If you often find
yourself manually writing your own GCode, then mecode is for y... | mit |
chrsrds/scikit-learn | sklearn/feature_extraction/tests/test_text.py | 1 | 44620 | # -*- coding: utf-8 -*-
from collections.abc import Mapping
import re
import warnings
import pytest
from scipy import sparse
from sklearn.feature_extraction.text import strip_tags
from sklearn.feature_extraction.text import strip_accents_unicode
from sklearn.feature_extraction.text import strip_accents_ascii
from sk... | bsd-3-clause |
CDSFinance/zipline | theano_rnn/rnn_minibatch.py | 1 | 39671 | """ Vanilla RNN
Parallelizes scan over sequences by using mini-batches.
@author Graham Taylor
"""
import numpy as np
import theano
import theano.tensor as T
from sklearn.base import BaseEstimator
import logging
import time
import os
import datetime
import cPickle as pickle
logger = logging.getLogger(__name__)
import ... | apache-2.0 |
buguen/pylayers | pylayers/gui/editor.py | 1 | 51168 | # -*- coding: utf-8 -*-
import sys, os, random
if 'QT_API' in os.environ:
if os.environ['QT_API'] != 'pyqt':
saveQTAPI = os.environ['QT_API']
os.environ['QT_API'] = 'pyqt'
else:
saveQTAPI = ''
os.environ['QT_API'] = 'pyqt'
try:
from mayavi.sources.vtk_data_source import VTKDataSource
... | lgpl-3.0 |
waterponey/scikit-learn | sklearn/cluster/k_means_.py | 2 | 59590 | """K-means clustering"""
# Authors: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Thomas Rueckstiess <ruecksti@in.tum.de>
# James Bergstra <james.bergstra@umontreal.ca>
# Jan Schlueter <scikit-learn@jan-schlueter.de>
# Nelle Varoquaux
# Peter Prettenhofer <peter.prettenh... | bsd-3-clause |
lsst-dm/great3-public | metrics/evaluate.py | 2 | 61024 | # Copyright (c) 2014, the GREAT3 executive committee (http://www.great3challenge.info/?q=contacts)
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without modification, are permitted
# provided that the following conditions are met:
#
# 1. Redistributions of source code must retain... | bsd-3-clause |
liangfok/controlit_demos | dreamer_controlit_demos/nodes/Demo11_Microwave.py | 1 | 32104 | #!/usr/bin/env python
'''
This uses 5-DOF end effector control to grab a cup out of a microwave oven.
'''
import sys, getopt # for getting and parsing command line arguments
import time
import math
import threading
import rospy
import smach
import smach_ros
from std_msgs.msg import Float64, Float64MultiArray, Mu... | lgpl-2.1 |
mmalter/dlstats | dlstats/tests/fetchers/test_esri.py | 1 | 63129 | # -*- coding: utf-8 -*-
"""
Created on Thu Nov 26 10:20:04 2015
@author: salimeh
"""
"""
Created on Thu Nov 26 10:20:04 2015
@author: salimeh
"""
import io
import tempfile
import datetime
import os
import pandas
from pprint import pprint
from urllib.parse import urlparse, urljoin
from urllib.request import url2pathn... | agpl-3.0 |
ThomasBrouwer/BNMTF | experiments/experiments_toy/convergence/nmtf_icm.py | 1 | 62712 | """
Recover the toy dataset using ICM.
We can plot the MSE, R2 and Rp as it converges, on the entire dataset.
We have I=100, J=80, K=5, L=5, and no test data.
We give flatter priors (1/10) than what was used to generate the data (1).
"""
import sys, os
project_location = os.path.dirname(__file__)+"/../../../../"
sys... | apache-2.0 |
jimmycallin/master-thesis | architectures/conll16st-hd-sdp/sup_parser_v4_hierarchy_cnn.py | 1 | 44144 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Sample Discourse Relation Classifier Train
Train parser for suplementary evaluation
Train should take three arguments
$inputDataset = the folder of the dataset to parse.
The folder structure is the same as in the tar file
$inputDataset/parses.json
$inputDataset... | mit |
weiHelloWorld/accelerated_sampling_with_autoencoder | MD_simulation_on_alanine_dipeptide/current_work/tests/ANN_simulation_test.py | 1 | 34218 | '''This is a test for functionality of ANN_simulation.py
'''
import sys, os, math, subprocess, matplotlib
from functools import reduce
matplotlib.use('agg')
sys.path.append('../src/') # add the source file folder
from ANN_simulation import *
from numpy.testing import assert_almost_equal, assert_equal
class test_S... | mit |
eqcorrscan/EQcorrscan | eqcorrscan/utils/plotting.py | 1 | 94525 | """
Utility code for most of the plots used as part of the EQcorrscan package.
:copyright:
EQcorrscan developers.
:license:
GNU Lesser General Public License, Version 3
(https://www.gnu.org/copyleft/lesser.html)
"""
import numpy as np
import logging
import datetime as dt
import copy
import os
import matp... | gpl-3.0 |
iled/gsimcli | GSIMCLI/interface/gui.py | 1 | 76499 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Created on 16/06/2014
@author: julio
"""
from PySide import QtCore, QtGui # , QtUiTools
from functools import partial
import glob
from multiprocessing import cpu_count
import os
import sys
from tempfile import NamedTemporaryFile
import time
import warnings
base = os... | gpl-3.0 |
xhochy/arrow | python/pyarrow/tests/test_convert_builtin.py | 1 | 66543 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
lfairchild/PmagPy | dialogs/thellier_gui_dialogs.py | 2 | 80057 | #!/usr/bin/env python
#=========================================================================
# LOG HEADER:
#
# Dialogs boxes for thellier_gui.py
#
#=========================================================================
#
# 11/16/2014 add some units to criteria dialogs
#
# 11/08/2014 Version add k_prime descrip... | bsd-3-clause |
RJT1990/pyflux | pyflux/gas/gasx.py | 1 | 41755 | import sys
if sys.version_info < (3,):
range = xrange
import numpy as np
import pandas as pd
import scipy.stats as ss
import scipy.special as sp
from patsy import dmatrices, dmatrix, demo_data
from .. import families as fam
from .. import tsm as tsm
from .. import data_check as dc
from .gas_core_recursions impor... | bsd-3-clause |
rbalda/neural_ocr | env/lib/python2.7/site-packages/matplotlib/tests/test_mlab.py | 3 | 119377 | from __future__ import (absolute_import, division, print_function,
unicode_literals)
from matplotlib.externals import six
import tempfile
from numpy.testing import assert_allclose, assert_array_equal
import numpy.ma.testutils as matest
import numpy as np
from nose.tools import (assert_equal, ... | mit |
gamaanderson/artview | artview/components/plot_grid_legacy.py | 1 | 42279 | """
plot_grid.py
Class instance used to make Display.
"""
# Load the needed packages
import numpy as np
import os
import pyart
from matplotlib.backends.qt_compat import is_pyqt5
if is_pyqt5():
from matplotlib.backends.backend_qt5agg import (
FigureCanvas, NavigationToolbar2QT as NavigationToolbar)
else:
... | bsd-3-clause |
GaloMALDONADO/motorg | motorog/dynTasks3.py | 1 | 60626 | import pinocchio as se3
import numpy as np
import paths as lp
import robot_config as rconf
import mocap_config as mconf
from hqp.wrapper import Wrapper
from trajectory_extractor import References
import ucm
import plot_tools
import csv
import indexes
import plotTasks
from hqp.viewer_utils import Viewer
import matplo... | gpl-3.0 |
alexandrudaia/gplearn | gplearn/genetic.py | 2 | 64518 | """Genetic Programming in Python, with a scikit-learn inspired API
The :mod:`sklearn.genetic` module implements Genetic Programming. These
are supervised learning methods based on applying evolutionary operations on
computer programs.
"""
# Author: Trevor Stephens <trevorstephens.com>
#
# License: BSD 3 clause
impor... | bsd-3-clause |
grlee77/numpy | numpy/lib/npyio.py | 1 | 89541 | import sys
import os
import re
import functools
import itertools
import warnings
import weakref
import contextlib
from operator import itemgetter, index as opindex
from collections.abc import Mapping
import numpy as np
from . import format
from ._datasource import DataSource
from numpy.core import overrides
from numpy... | bsd-3-clause |
par2/lamana | lamana/utils/tools.py | 1 | 46842 | #------------------------------------------------------------------------------
'''Handy tools for global use.
- build cases quickly
- read geo_strings from DataFrames
- write/read csv files to DataFrames
- compare sets
- resequence columns in DataFrame
- determine if brackets/parentheses match in a string
- assert pa... | bsd-3-clause |
achesak/weatherlog | resources/dialogs/info_dialog.py | 1 | 38166 | # -*- coding: utf-8 -*-
################################################################################
#
# WeatherLog: dialogs/info_dialog.py
# This dialog shows the dataset info.
#
################################################################################
# Import GTK for the dialog.
from gi.repository imp... | gpl-3.0 |
nisse3000/pymatgen | pymatgen/analysis/defects/point_defects.py | 1 | 90658 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module defines classes for point defects.
"""
__author__ = "Bharat Medasani, Nils E. R. Zimmermann"
__copyright__ = "Copyright 2011, The Materials Pr... | mit |
probprog/pyprob | pyprob/diagnostics.py | 1 | 53092 | import torch
import os
from collections import OrderedDict, defaultdict
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
import time
import sys
import csv
from torch.distributions.kl import kl_divergence
from . import __version__, util
from .distributions import Empirical
from .graph import ... | bsd-2-clause |
johnson1228/pymatgen | pymatgen/io/abinit/flows.py | 1 | 109644 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
A Flow is a container for Works, and works consist of tasks.
Flows are the final objects that can be dumped directly to a pickle file on disk
Flows are executed using abirun (abipy).
"""
from __future__ impo... | mit |
sonnyhu/scikit-learn | sklearn/mixture/tests/test_gaussian_mixture.py | 1 | 37240 | # Author: Wei Xue <xuewei4d@gmail.com>
# Thierry Guillemot <thierry.guillemot.work@gmail.com>
# License: BSD 3 clauseimport warnings
import sys
import warnings
import numpy as np
from scipy import stats, linalg
from sklearn.covariance import EmpiricalCovariance
from sklearn.datasets.samples_generator import... | bsd-3-clause |
Eric89GXL/scipy | tools/refguide_check.py | 4 | 31290 | #!/usr/bin/env python
"""
refguide_check.py [OPTIONS] [-- ARGS]
Check for a Scipy submodule whether the objects in its __all__ dict
correspond to the objects included in the reference guide.
Example of usage::
$ python refguide_check.py optimize
Note that this is a helper script to be able to check if things ar... | bsd-3-clause |
ccp137/DynamicViz | plot_cross_sections_between_two_points_as_html.py | 1 | 39620 | # -*- coding: utf-8 -*-
# Cross-Section Interactive Viewer
#
# by Chengping Chai, University of Tennessee, October 4, 2017
#
# Version 1.4
#
# Updates:
# V1.0, Chengping Chai, University of Tennessee, October 4, 2017
# V1.1, Chengping Chai, University of Tennessee, October 4, 2017
# some changes f... | gpl-3.0 |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/tseries/tests/test_timezones.py | 1 | 52203 | # pylint: disable-msg=E1101,W0612
from datetime import datetime, timedelta, tzinfo, date
import nose
import numpy as np
import pytz
from pandas import (Index, Series, DataFrame, isnull, Timestamp)
from pandas import DatetimeIndex, to_datetime, NaT
from pandas import tslib
import pandas.core.datetools as datetools
i... | gpl-2.0 |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/computation/tests/test_eval.py | 1 | 61792 | #!/usr/bin/env python
import warnings
import operator
from itertools import product
from distutils.version import LooseVersion
import nose
from nose.tools import assert_raises
from numpy.random import randn, rand, randint
import numpy as np
from numpy.testing import assert_array_equal, assert_allclose
from numpy.tes... | mit |
lixun910/pysal | pysal/explore/esda/moran.py | 1 | 56841 | """
Moran's I Spatial Autocorrelation Statistics
"""
__author__ = "Sergio J. Rey <srey@asu.edu>, \
Dani Arribas-Bel <daniel.arribas.bel@gmail.com>"
from pysal.lib.weights.spatial_lag import lag_spatial as slag
from .smoothing import assuncao_rate
from .tabular import _univariate_handler, _bivariate_handler
imp... | bsd-3-clause |
googleapis/python-bigquery | google/cloud/bigquery/client.py | 1 | 150658 | # Copyright 2015 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | apache-2.0 |
ebmdatalab/openprescribing | openprescribing/frontend/views/bookmark_utils.py | 1 | 33726 | # -*- coding: utf-8 -*-
from datetime import date
from tempfile import NamedTemporaryFile
import html.parser
import logging
import os
import re
import subprocess
import urllib.parse
from anymail.message import attach_inline_image_file
from dateutil.relativedelta import relativedelta
from premailer import Premailer
imp... | mit |
karllessard/tensorflow | tensorflow/tools/compatibility/renames_v2.py | 1 | 60522 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
cbertinato/pandas | pandas/tests/io/test_stata.py | 1 | 70474 | from collections import OrderedDict
import datetime as dt
from datetime import datetime
import gzip
import io
import os
import struct
import warnings
import numpy as np
import pytest
from pandas.core.dtypes.common import is_categorical_dtype
import pandas as pd
from pandas.core.frame import DataFrame, Series
import ... | bsd-3-clause |
eig-2017/the-magical-csv-merge-machine | merge_machine/api.py | 1 | 53356 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Mon Feb 6 15:01:16 2017
@author: leo
TODO:
- Safe file name / not unique per date
- API: List of finished modules for given project / source
- API: List of loaded sources
- API: Fetch logs
- API: Move implicit load out of API... | mit |
kklmn/xrt | examples/withRaycing/14_SoftiMAX/Softi_CXIw1D.py | 1 | 37180 | # -*- coding: utf-8 -*-
"""
!!! select one of the four functions to run at the very bottom !!!
!!! select 'rays', 'hybrid' or 'wave' below !!!
!!! select a desired cut and emittance below !!!
Described in the __init__ file.
"""
__author__ = "Konstantin Klementiev", "Roman Chernikov"
__date__ = "07 Feb 2018"
import os... | mit |
phobson/statsmodels | statsmodels/tsa/tests/test_arima.py | 1 | 89591 | import warnings
from statsmodels.compat.python import lrange, BytesIO
import numpy as np
from nose.tools import nottest
from numpy.testing import (assert_almost_equal, assert_, assert_allclose,
assert_raises, dec, TestCase)
from statsmodels.tools.testing import assert_equal
import statsmodel... | bsd-3-clause |
seancug/python-example | fatiando-0.2/fatiando/mesher.py | 1 | 47712 | """
Generate and operate on various kinds of meshes and geometric elements
**Geometric elements**
* :class:`~fatiando.mesher.Polygon`
* :class:`~fatiando.mesher.Square`
* :class:`~fatiando.mesher.Prism`
* :class:`~fatiando.mesher.PolygonalPrism`
* :class:`~fatiando.mesher.Sphere`
* :class:`~fatiando.mesher.Tesseroid`... | gpl-2.0 |
antiface/mne-python | mne/io/fiff/tests/test_raw.py | 2 | 42811 | from __future__ import print_function
# Author: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import os
import os.path as op
import glob
from copy import deepcopy
import warnings
import itertools as itt
import numpy as np
... | bsd-3-clause |
thaihungle/deepexp | deep-process/busi_task/presuf_train.py | 1 | 177089 | import warnings
warnings.filterwarnings('ignore')
import tensorflow as tf
import numpy as np
import pickle
import getopt
import time
import sys
import os
import pandas
import nltk
from keras.models import load_model
import csv
import distance
from jellyfish._jellyfish import damerau_levenshtein_distance
from sklearn ... | mit |
SU-ECE-17-7/ibeis | ibeis/scripts/classify_shark.py | 1 | 52673 | # -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
import utool as ut
import numpy as np
import sklearn
import sklearn.datasets
import sklearn.svm
import sklearn.metrics
from sklearn import preprocessing
from ibeis_cnn.models import abstract_models
from os.path im... | apache-2.0 |
PanDAWMS/pilot | RunJobEvent.py | 1 | 219652 | # Class definition:
# RunJobEvent: module for receiving and processing events from the Event Service
# Instances are generated with RunJobFactory via pUtil::getRunJob()
# Implemented as a singleton class
# http://stackoverflow.com/questions/42558/python-and-the-singleton-pattern
# Import relevant python/pilot... | apache-2.0 |
franeviso/pva-gisera | rescue_processing.py | 1 | 46601 | import numpy as np
import csv
import matplotlib.pyplot as plt
popsize = ['10','20','30','40','50']
safesites = ['0.25','0.3','0.35','0.4','0.45','0.5']
#safesites = ['0.25','0.3','0.35']
probnews = ['0.0','0.2','0.4','0.6','0.8','1.0']
#probnews = ['0.0','0.2','0.4','0.6']
# demographic files
persist = np.zeros((... | apache-2.0 |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/io/tests/test_pytables.py | 1 | 181497 | import nose
import sys
import os
import warnings
import tempfile
from contextlib import contextmanager
import datetime
import numpy as np
import pandas
import pandas as pd
from pandas import (Series, DataFrame, Panel, MultiIndex, Categorical, bdate_range,
date_range, timedelta_range, Index, Dateti... | mit |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/tests/test_panel.py | 1 | 92862 | # -*- coding: utf-8 -*-
# pylint: disable=W0612,E1101
from datetime import datetime
import operator
import nose
from functools import wraps
import numpy as np
import pandas as pd
from pandas import Series, DataFrame, Index, isnull, notnull, pivot, MultiIndex
from pandas.core.datetools import bday
from pandas.core.n... | gpl-2.0 |
yeatmanlab/pyAFQ | AFQ/viz/utils.py | 2 | 73629 | from collections import OrderedDict
import os.path as op
import os
import logging
import tempfile
import numpy as np
from scipy.stats import sem
import pandas as pd
import imageio as io
import IPython.display as display
import seaborn as sns
import matplotlib.pyplot as plt
from matplotlib.lines import Line2D
from matp... | bsd-2-clause |
NextThought/pypy-numpy | numpy/linalg/linalg.py | 1 | 67505 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
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