repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
vdrhtc/Measurement-automation | lib3/core/drivers/keysightM3202A.py | 1 | 32533 | """
product link:
https://www.keysight.com/en/pd-2747446-pn-M3202A/pxie-arbitrary-waveform-generator-1-gs-s-14-bit-400-mhz?cc=RU&lc=en
user's guide for Keysight SD1 version 2.x
https://literature.cdn.keysight.com/litweb/pdf/M3201-90001.pdf?id=2787170
user's guide for Keysight SD1 version 3.x
https://literature.cdn.ke... | gpl-3.0 |
lesgo-jhu/lesgo | HITData/colormaps.py | 1 | 50555 | # New matplotlib colormaps by Nathaniel J. Smith, Stefan van der Walt,
# and (in the case of viridis) Eric Firing.
#
# This file and the colormaps in it are released under the CC0 license /
# public domain dedication. We would appreciate credit if you use or
# redistribute these colormaps, but do not impose any legal r... | gpl-3.0 |
ndingwall/scikit-learn | sklearn/linear_model/tests/test_ridge.py | 3 | 49780 | import numpy as np
import scipy.sparse as sp
from scipy import linalg
from itertools import product
import pytest
from sklearn.utils._testing import assert_almost_equal
from sklearn.utils._testing import assert_allclose
from sklearn.utils._testing import assert_array_almost_equal
from sklearn.utils._testing import as... | bsd-3-clause |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/indexing/test_floats.py | 1 | 33188 | from warnings import catch_warnings
import numpy as np
import pytest
from pandas import DataFrame, Float64Index, Index, Int64Index, RangeIndex, Series
import pandas.util.testing as tm
from pandas.util.testing import assert_almost_equal, assert_series_equal
ignore_ix = pytest.mark.filterwarnings("ignore:\\n.ix:Future... | apache-2.0 |
statgen/pheweb | pheweb/load/phenolist/__init__.py | 1 | 33093 |
from ...utils import PheWebError
from ...file_utils import get_generated_path, make_basedir, get_filepath, read_maybe_gzip
from ..read_input_file import PhenoReader
import os
import string
import json
import csv
import glob
import re
import itertools
import sys
import copy
import boltons.iterutils
import tqdm
import ... | agpl-3.0 |
edhuckle/statsmodels | statsmodels/iolib/foreign.py | 25 | 43125 | """
Input/Output tools for working with binary data.
The Stata input tools were originally written by Joe Presbrey as part of PyDTA.
You can find more information here http://presbrey.mit.edu/PyDTA
See also
---------
numpy.lib.io
"""
from statsmodels.compat.python import (zip, lzip, lmap, lrange, string_types, long,... | bsd-3-clause |
boomsbloom/dtm-fmri | DTM/for_gensim/lib/python2.7/site-packages/matplotlib/colorbar.py | 1 | 49819 | '''
Colorbar toolkit with two classes and a function:
:class:`ColorbarBase`
the base class with full colorbar drawing functionality.
It can be used as-is to make a colorbar for a given colormap;
a mappable object (e.g., image) is not needed.
:class:`Colorbar`
the derived class ... | mit |
hrjn/scikit-learn | sklearn/gaussian_process/gaussian_process.py | 19 | 34705 | # -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# License: BSD 3 clause
from __future__ import print_function
import numpy as np
from scipy import linalg, optimize
from ..base import BaseEstimator, RegressorMixin
from ..metrics... | bsd-3-clause |
sgibbes/carbon-budget | carbon_pools/create_BGC_deadwood_litter_soil_totalC_in_emis_year.py | 1 | 30001 | import datetime
import sys
import pandas as pd
import os
import numpy as np
import rasterio
sys.path.append('../')
import constants_and_names as cn
import universal_util as uu
# Creates a dictionary of biomass in belowground, deadwood, and litter pools to aboveground biomass pool
def mangrove_pool_ratio_dict(gain_tabl... | apache-2.0 |
jlandmann/oggm | deployment/fabfile.py | 2 | 41370 |
#---------written by Felix Oesterle (FSO)-----------------
#-DESCRIPTION:
# This is based on fabfile from Raincloud Project (simplified)
#
#-Last modified: Thu Jul 09, 2015 13:10
#@author Felix Oesterle
#-----------------------------------------------------------
from __future__ import with_statement, print_function... | gpl-3.0 |
kaichogami/scikit-learn | sklearn/linear_model/logistic.py | 9 | 67760 |
"""
Logistic Regression
"""
# Author: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Fabian Pedregosa <f@bianp.net>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Manoj Kumar <manojkumarsivaraj334@gmail.com>
# Lars Buitinck
# Simon Wu <s8wu@uwaterloo.ca>
im... | bsd-3-clause |
mrustl/flopy | flopy/modflow/mfsfr2.py | 1 | 94999 | __author__ = 'aleaf'
import sys
sys.path.insert(0, '..')
import textwrap
import os
import numpy as np
from numpy.lib import recfunctions
from ..pakbase import Package
from flopy.utils.util_list import MfList
from ..utils.flopy_io import line_parse
class ModflowSfr2(Package):
"""
Streamflow-R... | bsd-3-clause |
fprados/nipype | nipype/algorithms/rapidart.py | 5 | 30079 | # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""
The rapidart module provides routines for artifact detection and region of
interest analysis.
These functions include:
* ArtifactDetect: performs artifact detection on functional images
* Stimulu... | bsd-3-clause |
dsullivan7/scikit-learn | sklearn/decomposition/dict_learning.py | 16 | 43638 | """ Dictionary learning
"""
from __future__ import print_function
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD 3 clause
import time
import sys
import itertools
from math import sqrt, floor, ceil
import numpy as np
from scipy import linalg
from numpy.lib.stride_tricks import as_strided
f... | bsd-3-clause |
nmartensen/pandas | pandas/tests/plotting/test_series.py | 4 | 33941 | # coding: utf-8
""" Test cases for Series.plot """
import itertools
import pytest
from datetime import datetime
import pandas as pd
from pandas import Series, DataFrame, date_range
from pandas.compat import range, lrange
import pandas.util.testing as tm
import numpy as np
from numpy.random import randn
import pa... | bsd-3-clause |
jyhmiinlin/cineFSE | CsTransform/pynufft3.py | 1 | 57204 | '''@package docstring
@author: Jyh-Miin Lin (Jimmy), Cambridge University
@address: jyhmiinlin@gmail.com
Created on 2013/1/21
================================================================================
This file is part of pynufft.
pynufft is free software: you can redistribute it and/or modify
it u... | gpl-3.0 |
freedomtan/tensorflow | tensorflow/python/keras/preprocessing/image.py | 1 | 48044 | # Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
fraricci/pymatgen | pymatgen/analysis/pourbaix_diagram.py | 2 | 39890 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module is intended to be used to compute Pourbaix diagrams
of arbitrary compositions and formation energies. If you use
this module in your work, please consider citing the following:
General formalis... | mit |
imsparsh/librosa | librosa/feature/spectral.py | 2 | 38170 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Spectral feature extraction"""
import numpy as np
from .. import util
from .. import filters
from ..util.exceptions import ParameterError
from ..core.time_frequency import fft_frequencies
from ..core.audio import zero_crossings
from ..core.spectrum import logamplitude... | isc |
pratapvardhan/pandas | pandas/io/json/json.py | 1 | 33517 | # pylint: disable-msg=E1101,W0613,W0603
from itertools import islice
import os
import numpy as np
import pandas._libs.json as json
from pandas._libs.tslib import iNaT
from pandas.compat import StringIO, long, u, to_str
from pandas import compat, isna
from pandas import Series, DataFrame, to_datetime, MultiIndex
from p... | bsd-3-clause |
jmmauricio/pypstools | pypstools/publisher.py | 2 | 62263 | """ Tools for plotting and publishing power system simulations and analysis results.
(c) 2015 Juan Manuel Mauricio
https://www.packtpub.com/books/content/plotting-geographical-data-using-basemap
"""
from __future__ import division, print_function
import numpy as np
import scipy.linalg
import matplotlib.pyplot as p... | gpl-3.0 |
toobaz/pandas | pandas/tests/reshape/test_concat.py | 2 | 100605 | from collections import OrderedDict, abc, deque
import datetime as dt
from datetime import datetime
from decimal import Decimal
from io import StringIO
from itertools import combinations
from warnings import catch_warnings
import dateutil
import numpy as np
from numpy.random import randn
import pytest
from pandas.cor... | bsd-3-clause |
materialsproject/pymatgen | pymatgen/analysis/surface_analysis.py | 1 | 81689 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines tools to analyze surface and adsorption related
quantities as well as related plots. If you use this module, please
consider citing the following works::
R. Tran, Z. Xu, B. Radhakri... | mit |
agilgur5/LTLMoP | src/lib/handlers/share/MotionControl/BugControllerHandler.py | 8 | 39771 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
===================================================================
BugController.py - Bug Algorithm Motion Controller
===================================================================
This motion controller uses the Bug 2 algorithm developed by V. Lumelsky and A. St... | gpl-3.0 |
guedou/scapy-codecov | scapy/layers/inet.py | 1 | 61293 | ## This file is part of Scapy
## See http://www.secdev.org/projects/scapy for more informations
## Copyright (C) Philippe Biondi <phil@secdev.org>
## This program is published under a GPLv2 license
"""
IPv4 (Internet Protocol v4).
"""
import os,time,struct,re,socket,new
from select import select
from collections impo... | gpl-2.0 |
blab/nextstrain-augur | augur/frequency_estimators.py | 1 | 47158 | # estimates clade frequencies
from __future__ import division, print_function
from collections import defaultdict
import numpy as np
import pandas as pd
from scipy.interpolate import interp1d
from scipy.stats import norm
import sys
import time
debug = False
log_thres = 10.0
def get_pivots(observations, pivot_interva... | agpl-3.0 |
datapythonista/pandas | pandas/conftest.py | 1 | 39966 | """
This file is very long and growing, but it was decided to not split it yet, as
it's still manageable (2020-03-17, ~1.1k LoC). See gh-31989
Instead of splitting it was decided to define sections here:
- Configuration / Settings
- Autouse fixtures
- Common arguments
- Missing values & co.
- Classes
- Indices
- Serie... | bsd-3-clause |
Astroua/TurbuStat | turbustat/statistics/scf/scf.py | 2 | 37874 | # Licensed under an MIT open source license - see LICENSE
from __future__ import print_function, absolute_import, division
import numpy as np
from astropy import units as u
from astropy.wcs import WCS
from six import string_types
import statsmodels.api as sm
from warnings import warn
from astropy.utils.console import ... | mit |
mbayon/TFG-MachineLearning | vbig/lib/python2.7/site-packages/scipy/signal/filter_design.py | 7 | 139256 | """Filter design.
"""
from __future__ import division, print_function, absolute_import
import math
import operator
import warnings
import numpy
import numpy as np
from numpy import (atleast_1d, poly, polyval, roots, real, asarray,
resize, pi, absolute, logspace, r_, sqrt, tan, log10,
... | mit |
MJuddBooth/pandas | pandas/core/base.py | 1 | 49638 | """
Base and utility classes for pandas objects.
"""
from collections import OrderedDict
import textwrap
import warnings
import numpy as np
import pandas._libs.lib as lib
import pandas.compat as compat
from pandas.compat import PYPY, builtins, map, range
from pandas.compat.numpy import function as nv
from pandas.erro... | bsd-3-clause |
dch312/numpy | numpy/core/code_generators/ufunc_docstrings.py | 2 | 90047 | """
Docstrings for generated ufuncs
The syntax is designed to look like the function add_newdoc is being
called from numpy.lib, but in this file add_newdoc puts the docstrings
in a dictionary. This dictionary is used in
numpy/core/code_generators/generate_umath.py to generate the docstrings
for the ufuncs in numpy.co... | bsd-3-clause |
juliantaylor/scipy | scipy/signal/ltisys.py | 2 | 30883 | """
ltisys -- a collection of classes and functions for modeling linear
time invariant systems.
"""
from __future__ import division, print_function, absolute_import
#
# Author: Travis Oliphant 2001
#
# Feb 2010: Warren Weckesser
# Rewrote lsim2 and added impulse2.
# Aug 2013: Juan Luis Cano
# Rewrote abcd_normaliz... | bsd-3-clause |
ConnectedSystems/veneer-py | veneer/general.py | 1 | 30440 | try:
from urllib2 import quote
import httplib as hc
except:
from urllib.request import quote
import http.client as hc
import json
import re
from .bulk import VeneerRetriever
from .server_side import VeneerIronPython
from .utils import SearchableList,_stringToList,read_veneer_csv,objdict
import pandas a... | isc |
puotila/PORA-IP | PORAIPHydrography.py | 1 | 62045 | #!/usr/bin/env python
"""
Plot Polar ORA-IP annual mean profiles (T and S),
and Hiroshi Sumata's and WOA13 1995-2004 profiles.
"""
import os
import sys
import re
import copy
import glob
import string
import cPickle
import gzip
import numpy as np
import matplotlib as mpl
mpl.use('Agg')
import matplotlib.pyplot as plt
i... | gpl-3.0 |
mortonjt/american-gut-web | amgut/lib/locale_data/british_gut.py | 1 | 111728 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import division
from amgut.lib.config_manager import AMGUT_CONFIG
# -----------------------------------------------------------------------------
# Copyright (c) 2014--, The American Gut Project Development Team.
#
# Distributed under the terms of the BSD 3... | bsd-3-clause |
perimosocordiae/scipy | scipy/fft/_basic.py | 12 | 62710 | from scipy._lib.uarray import generate_multimethod, Dispatchable
import numpy as np
def _x_replacer(args, kwargs, dispatchables):
"""
uarray argument replacer to replace the transform input array (``x``)
"""
if len(args) > 0:
return (dispatchables[0],) + args[1:], kwargs
kw = kwargs.copy()... | bsd-3-clause |
blakedewey/nipype | nipype/algorithms/modelgen.py | 7 | 34756 | # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""
The modelgen module provides classes for specifying designs for individual
subject analysis of task-based fMRI experiments. In particular it also includes
algorithms for generating regressors for sparse... | bsd-3-clause |
gasuperdev/sifra | sifra/fit_model.py | 1 | 33083 | from __future__ import print_function
from sifraclasses import *
import matplotlib.pyplot as plt
from matplotlib.font_manager import FontProperties
import numpy as np
from scipy import stats
from scipy.optimize import curve_fit
import lmfit
import pandas as pd
pd.options.display.float_format = '{:,.4f}'.format
impor... | apache-2.0 |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/scipy/stats/morestats.py | 3 | 52106 | # Author: Travis Oliphant, 2002
#
# Further updates and enhancements by many SciPy developers.
#
from __future__ import division, print_function, absolute_import
import math
import warnings
from . import statlib
from . import stats
from .stats import find_repeats
from . import distributions
from numpy import isscala... | gpl-3.0 |
kelseyoo14/Wander | venv_2_7/lib/python2.7/site-packages/IPython/core/completer.py | 3 | 45462 | # encoding: utf-8
"""Word completion for IPython.
This module is a fork of the rlcompleter module in the Python standard
library. The original enhancements made to rlcompleter have been sent
upstream and were accepted as of Python 2.3, but we need a lot more
functionality specific to IPython, so this module will cont... | artistic-2.0 |
ddebrunner/streamsx.topology | com.ibm.streamsx.topology/opt/python/packages/streamsx/topology/topology.py | 1 | 116592 | # coding=utf-8
# Licensed Materials - Property of IBM
# Copyright IBM Corp. 2015,2019
"""
Streaming application definition.
********
Overview
********
IBM Streams is an advanced analytic platform that allows user-developed
applications to quickly ingest, analyze and correlate information as it
arrives from thousands... | apache-2.0 |
pratapvardhan/pandas | pandas/tests/reshape/merge/test_merge.py | 3 | 76699 | # pylint: disable=E1103
import random
import re
from collections import OrderedDict
from datetime import date, datetime
import numpy as np
import pytest
from numpy import nan
from numpy.random import randn
import pandas as pd
import pandas.util.testing as tm
from pandas import (Categorical, CategoricalIndex, DataFra... | bsd-3-clause |
rohit21122012/DCASE2013 | Other/task3_sound_event_detection_in_real_life_audio.py | 1 | 47241 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# DCASE 2016::Sound Event Detection in Real-life Audio / Baseline System
from src.ui import *
from src.general import *
from src.files import *
from src.features import *
from src.sound_event_detection import *
from src.dataset import *
from src.evaluation import *
imp... | mit |
Edu-Glez/Bank_sentiment_analysis | env/lib/python3.6/site-packages/pandas/core/reshape.py | 7 | 40736 | # pylint: disable=E1101,E1103
# pylint: disable=W0703,W0622,W0613,W0201
from pandas.compat import range, zip
from pandas import compat
import itertools
import numpy as np
from pandas.types.common import _ensure_platform_int, is_list_like
from pandas.types.cast import _maybe_promote
from pandas.types.missing import no... | apache-2.0 |
mortada/scipy | scipy/signal/filter_design.py | 21 | 127810 | """Filter design.
"""
from __future__ import division, print_function, absolute_import
import warnings
import numpy
from numpy import (atleast_1d, poly, polyval, roots, real, asarray, allclose,
resize, pi, absolute, logspace, r_, sqrt, tan, log10,
arctan, arcsinh, sin, exp, cosh,... | bsd-3-clause |
kou/arrow | python/pyarrow/tests/test_types.py | 4 | 30391 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
florentchandelier/zipline | tests/pipeline/test_quarters_estimates.py | 5 | 109783 | from __future__ import division
from datetime import timedelta
from functools import partial
import blaze as bz
import itertools
from nose.tools import assert_true
from nose_parameterized import parameterized
import numpy as np
from numpy.testing import assert_array_equal, assert_almost_equal
import pandas as pd
from... | apache-2.0 |
mstrader/MkidDigitalReadout | DataReadout/Setup/DARKNESS-Beammapping/DARKNESSBeamMap.py | 1 | 41421 | import os, sys, time, struct, traceback
import numpy as np
from tables import *
import matplotlib.pyplot as plt
from matplotlib.backends.backend_pdf import PdfPages
import scipy.signal as signal
from scipy import optimize
import scipy.stats as stats
from readDict import readDict
from PyQt4.QtGui import *
from... | gpl-2.0 |
SBRG/ssbio | ssbio/protein/sequence/seqprop.py | 1 | 36093 | """
SeqProp
=======
"""
import os.path as op
import pandas as pd
import tempfile
import requests
import logging
from copy import copy, deepcopy
from slugify import Slugify
import os
import subprocess
from Bio import SeqIO
from BCBio import GFF
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.SeqFea... | mit |
henchc/CLFL_2016 | CLFL_mdf_classification.py | 2 | 61505 | """Modified sklearn classfication for 2016 CLFL Paper
Metrics to assess performance on classification task given classe prediction
Functions named as ``*_score`` return a scalar value to maximize: the higher
the better
Function named as ``*_error`` or ``*_loss`` return a scalar value to minimize:
the lower the bette... | mit |
longjon/numpy | numpy/lib/npyio.py | 2 | 65669 | from __future__ import division, absolute_import, print_function
import sys
import os
import re
import itertools
import warnings
import weakref
from operator import itemgetter
import numpy as np
from . import format
from ._datasource import DataSource
from ._compiled_base import packbits, unpackbits
from ._iotools im... | bsd-3-clause |
Splo0sh/3DCT | TDCT_main.py | 2 | 31226 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
3D Correlation Toolbox - 3DCT
Copyright (C) 2016 Jan Arnold
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
... | gpl-3.0 |
jaredwo/topowx | twx/db/create_db_all_stations.py | 1 | 60857 | '''
Functions and classes for inserting station observation data from multiple sources
into a single database format.
Copyright 2014,2015, Jared Oyler.
This file is part of TopoWx.
TopoWx is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the ... | gpl-3.0 |
18padx08/PPTex | PPTexEnv_x86_64/lib/python2.7/site-packages/scipy/optimize/nonlin.py | 12 | 46461 | r"""
.. module:: scipy.optimize.nonlin
=================
Nonlinear solvers
=================
.. currentmodule:: scipy.optimize
This is a collection of general-purpose nonlinear multidimensional
solvers. These solvers find *x* for which *F(x) = 0*. Both *x*
and *F* can be multidimensional.
Routines
========
Large-... | mit |
dlatk/dlatk | dlatk/featureGetter.py | 1 | 45193 | from configparser import SafeConfigParser
try:
import MySQLdb
except:
pass
import pandas as pd
import csv
#math / stats:
from numpy import zeros, sqrt, array, std, mean
from scipy.stats import t as spt
import numpy as np
#infrastructure
from . import dlaConstants as dlac
from .dlaWorker import DLAWorker
from ... | gpl-3.0 |
massmutual/scikit-learn | sklearn/cross_validation.py | 1 | 68870 | """
The :mod:`sklearn.cross_validation` module includes utilities for cross-
validation and performance evaluation.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD 3 clause
from... | bsd-3-clause |
vidartf/hyperspy | hyperspy/external/tifffile.py | 1 | 221197 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# tifffile.py
# Copyright (c) 2008-2016, Christoph Gohlke
# Copyright (c) 2008-2016, The Regents of the University of California
# Produced at the Laboratory for Fluorescence Dynamics
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or wit... | gpl-3.0 |
DyogenIBENS/PhylDiag | src/benchmark/comparePhylDiagAndADHORESbsToSimulatedSbs.py | 1 | 31601 | #! /usr/bin/python
# -*- coding: utf-8 -*-
import os
import sys
import numpy
import enum
import pickle
import getpass # https://stackoverflow.com/questions/842059/is-there-a-portable-way-to-get-the-current-username-in-python
import itertools
import collections
from utils import myDiags
from utils import myTools
fro... | gpl-3.0 |
itaiin/arrow | python/pyarrow/tests/test_parquet.py | 1 | 80692 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
rs2/pandas | pandas/core/internals/managers.py | 1 | 60465 | from collections import defaultdict
import itertools
from typing import (
Any,
DefaultDict,
Dict,
List,
Optional,
Sequence,
Tuple,
TypeVar,
Union,
)
import warnings
import numpy as np
from pandas._libs import internals as libinternals, lib
from pandas._typing import ArrayLike, Dtyp... | bsd-3-clause |
bhargav/scikit-learn | sklearn/linear_model/ridge.py | 7 | 49612 | """
Ridge regression
"""
# Author: Mathieu Blondel <mathieu@mblondel.org>
# Reuben Fletcher-Costin <reuben.fletchercostin@gmail.com>
# Fabian Pedregosa <fabian@fseoane.net>
# Michael Eickenberg <michael.eickenberg@nsup.org>
# License: BSD 3 clause
from abc import ABCMeta, abstractmethod
impor... | bsd-3-clause |
adamrp/qiita | qiita_db/metadata_template/test/test_prep_template.py | 1 | 66190 | # -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
varepsilon/cas-eval | logs_processing/click_model.py | 1 | 32467 | #!/usr/bin/env python
#
# Copyright 2016 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... | apache-2.0 |
cmtm/networkx | networkx/convert_matrix.py | 2 | 33743 | """Functions to convert NetworkX graphs to and from numpy/scipy matrices.
The preferred way of converting data to a NetworkX graph is through the
graph constuctor. The constructor calls the to_networkx_graph() function
which attempts to guess the input type and convert it automatically.
Examples
--------
Create a 10... | bsd-3-clause |
shahankhatch/scikit-learn | sklearn/ensemble/gradient_boosting.py | 6 | 67631 | """Gradient Boosted Regression Trees
This module contains methods for fitting gradient boosted regression trees for
both classification and regression.
The module structure is the following:
- The ``BaseGradientBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regressio... | bsd-3-clause |
sjl767/woo | py/utils.py | 1 | 44296 | # encoding: utf-8
#
# utility functions for woo
#
# 2008-2009 © Václav Šmilauer <eudoxos@arcig.cz>
"""Heap of functions that don't (yet) fit anywhere else.
"""
import math,random,doctest
import woo, woo.dem, woo.core
import sys,os,warnings
from minieigen import *
from woo.dem import *
from woo.fem import *
from woo.... | gpl-2.0 |
Scapogo/zipline | zipline/pipeline/loaders/earnings_estimates.py | 4 | 63317 | from abc import abstractmethod, abstractproperty
import numpy as np
import pandas as pd
from six import viewvalues
from toolz import groupby
from zipline.lib.adjusted_array import AdjustedArray
from zipline.lib.adjustment import (
Datetime641DArrayOverwrite,
Datetime64Overwrite,
Float641DArrayOverwrite,
... | apache-2.0 |
hposborn/Namaste | namaste/planetlib.py | 1 | 83024 | import numpy as np
import glob
import os
from os import path
import matplotlib
#matplotlib.use('Agg')
import pylab as plt
import logging
import astropy.io.fits as fits
import astropy.units as u
import astropy.coordinates as co
import pandas as pd
'''
Assorted scripts used by Namaste
'''
Namwd = path.dirname(path.realp... | mit |
stefanv/viscm | viscm/gui.py | 1 | 30987 | # This file is part of viscm
# Copyright (C) 2015 Nathaniel Smith <njs@pobox.com>
# Copyright (C) 2015 Stefan van der Walt <stefanv@berkeley.edu>
# See file LICENSE.txt for license information.
# Simple script using CIECAM02 and CAM02-UCS to visualize properties of a
# matplotlib colormap
import sys
import os.path
i... | mit |
cython-testbed/pandas | pandas/io/sql.py | 1 | 57410 | # -*- coding: utf-8 -*-
"""
Collection of query wrappers / abstractions to both facilitate data
retrieval and to reduce dependency on DB-specific API.
"""
from __future__ import print_function, division
from datetime import datetime, date, time
import warnings
import re
import numpy as np
import pandas._libs.lib as ... | bsd-3-clause |
QuantumQuadrate/CsPyController | python/analysis.py | 1 | 44274 | from __future__ import division
__author__ = 'Martin Lichtman'
import logging
logger = logging.getLogger(__name__)
from cs_errors import PauseError
import numpy as np
import threading, traceback, time
import matplotlib as mpl
mpl.use('PDF')
from matplotlib.figure import Figure
from matplotlib.path import Path
impo... | lgpl-3.0 |
wdbm/deep_throat | deep_throat.py | 1 | 185904 | #!/usr/bin/python
# -*- coding: utf-8 -*-
"""
################################################################################
# #
# deep throat #
# ... | gpl-3.0 |
chugunovyar/factoryForBuild | env/lib/python2.7/site-packages/mpl_toolkits/mplot3d/axes3d.py | 10 | 97630 | # axes3d.py, original mplot3d version by John Porter
# Created: 23 Sep 2005
# Parts fixed by Reinier Heeres <reinier@heeres.eu>
# Minor additions by Ben Axelrod <baxelrod@coroware.com>
# Significant updates and revisions by Ben Root <ben.v.root@gmail.com>
"""
Module containing Axes3D, an object which can plot 3D objec... | gpl-3.0 |
bpeng2000/SOS | test/test_execute.py | 1 | 68135 | #!/usr/bin/env python3
#
# Copyright (c) Bo Peng and the University of Texas MD Anderson Cancer Center
# Distributed under the terms of the 3-clause BSD License.
import glob
import os
import sys
import shutil
import subprocess
import unittest
from sos._version import __version__
from sos.parser import SoS_Script
from... | gpl-3.0 |
wright-group/WrightData | unpublished Kohler - Lineshape Simulation/figures.py | 1 | 103505 | ### import ####################################################################
import os
import itertools
import matplotlib
import matplotlib.pyplot as plt
import matplotlib.gridspec as grd
import matplotlib.colors as colors
import matplotlib.cm as cmx
from mpl_toolkits.mplot3d.art3d import Poly3DCollection
import ... | cc0-1.0 |
python-visualization/folium | folium/features.py | 1 | 62581 | # -*- coding: utf-8 -*-
"""
Leaflet GeoJson and miscellaneous features.
"""
import json
import warnings
import functools
import operator
from branca.colormap import LinearColormap, StepColormap
from branca.element import (Element, Figure, JavascriptLink, MacroElement)
from branca.utilities import color_brewer
from... | mit |
datapythonista/pandas | pandas/tests/reshape/merge/test_multi.py | 3 | 30687 | import numpy as np
import pytest
import pandas as pd
from pandas import (
DataFrame,
Index,
MultiIndex,
Series,
Timestamp,
)
import pandas._testing as tm
from pandas.core.reshape.concat import concat
from pandas.core.reshape.merge import merge
@pytest.fixture
def left():
"""left dataframe (no... | bsd-3-clause |
Tagar/incubator-airflow | airflow/hooks/hive_hooks.py | 2 | 32908 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
GoogleCloudPlatform/appengine-config-transformer | yaml_conversion/lib/google/appengine/api/appinfo.py | 1 | 88031 | # Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | apache-2.0 |
webmasterraj/GaSiProMo | flask/lib/python2.7/site-packages/pandas/tests/test_strings.py | 2 | 58244 | # -*- coding: utf-8 -*-
# pylint: disable-msg=E1101,W0612
from datetime import datetime, timedelta, date
import os
import operator
import re
import warnings
import nose
from numpy import nan as NA
import numpy as np
from numpy.testing import assert_array_equal
from numpy.random import randint
from pandas.compat imp... | gpl-2.0 |
madjelan/scikit-learn | sklearn/feature_extraction/text.py | 24 | 50103 | # -*- coding: utf-8 -*-
# Authors: Olivier Grisel <olivier.grisel@ensta.org>
# Mathieu Blondel <mathieu@mblondel.org>
# Lars Buitinck <L.J.Buitinck@uva.nl>
# Robert Layton <robertlayton@gmail.com>
# Jochen Wersdörfer <jochen@wersdoerfer.de>
# Roman Sinayev <roman.sinayev@gma... | bsd-3-clause |
ycaihua/scikit-learn | sklearn/metrics/classification.py | 1 | 55852 | """Metrics to assess performance on classification task given classe prediction
Functions named as ``*_score`` return a scalar value to maximize: the higher
the better
Function named as ``*_error`` or ``*_loss`` return a scalar value to minimize:
the lower the better
"""
# Authors: Alexandre Gramfort <alexandre.gram... | bsd-3-clause |
fspaolo/scikit-learn | sklearn/preprocessing/data.py | 5 | 34765 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# License: BSD 3 clause
import numbers
import warnings
import numpy as np
from scipy import sparse
fr... | bsd-3-clause |
zfrenchee/pandas | pandas/core/indexing.py | 1 | 76998 | # pylint: disable=W0223
import textwrap
import warnings
import numpy as np
from pandas.compat import range, zip
import pandas.compat as compat
from pandas.core.dtypes.generic import ABCDataFrame, ABCPanel, ABCSeries
from pandas.core.dtypes.common import (
is_integer_dtype,
is_integer, is_float,
is_list_like... | bsd-3-clause |
rgommers/numpy | numpy/lib/recfunctions.py | 10 | 56525 | """
Collection of utilities to manipulate structured arrays.
Most of these functions were initially implemented by John Hunter for
matplotlib. They have been rewritten and extended for convenience.
"""
import itertools
import numpy as np
import numpy.ma as ma
from numpy import ndarray, recarray
from numpy.ma import ... | bsd-3-clause |
kiyoto/statsmodels | statsmodels/tsa/statespace/tools.py | 6 | 48837 | """
Statespace Tools
Author: Chad Fulton
License: Simplified-BSD
"""
from __future__ import division, absolute_import, print_function
import numpy as np
from statsmodels.tools.data import _is_using_pandas
from . import _statespace
has_find_best_blas_type = True
try:
from scipy.linalg.blas import find_best_blas_t... | bsd-3-clause |
pianomania/scikit-learn | sklearn/preprocessing/data.py | 15 | 68211 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Eric Martin <eric@ericmart.in>
# Giorgio Patrini <giorgio.patrini@anu.edu.au>
# Lic... | bsd-3-clause |
parrt/lolviz | lolviz.py | 1 | 41950 | """
A small set of functions that display simple data structures and
arbitrary object graphs in a reasonable manner using graphviz.
Even the call stack can be displayed well.
This is inspired by the object connectivity graphs in Pythontutor.com.
I love Pythontutor.com for interactive demos with the students,
but for e... | bsd-3-clause |
chrsrds/scikit-learn | sklearn/preprocessing/label.py | 2 | 33188 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Joel Nothman <joel.nothman@gmail.com>
# Hamzeh Alsalhi <ha258@cornell.edu>
# Licens... | bsd-3-clause |
vlopezferrando/pymut | test/tests.py | 1 | 46972 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys; sys.path.insert(1, '..')
import os; TEST_DIR = os.path.dirname(os.path.abspath(__file__))
import os; os.environ['PMUT_DATA_DIR'] = os.path.join(TEST_DIR, '../test/data')
import matplotlib; matplotlib.use('Agg')
import io
import itertools
import logging
import ... | mit |
materialsproject/pymatgen | pymatgen/analysis/graphs.py | 1 | 112497 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Module for graph representations of crystals.
"""
import copy
import logging
import os.path
import subprocess
import warnings
from collections import defaultdict, namedtuple
from itertools import combinati... | mit |
joshbohde/scikit-learn | sklearn/hmm.py | 2 | 42719 | # Hidden Markov Models
#
# Author: Ron Weiss <ronweiss@gmail.com>
import string
import numpy as np
from .utils import check_random_state
from .utils.extmath import logsum
from .base import BaseEstimator
from .mixture import (GMM, lmvnpdf, normalize, sample_gaussian,
_distribute_covar_matrix_to_match... | bsd-3-clause |
jmetzen/scikit-learn | sklearn/tree/tests/test_tree.py | 5 | 52370 | """
Testing for the tree module (sklearn.tree).
"""
import pickle
from functools import partial
from itertools import product
import platform
import numpy as np
from scipy.sparse import csc_matrix
from scipy.sparse import csr_matrix
from scipy.sparse import coo_matrix
from sklearn.random_projection import sparse_rand... | bsd-3-clause |
pgandhi999/spark | python/pyspark/sql/tests/test_pandas_udf_scalar.py | 5 | 52294 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
xuewei4d/scikit-learn | sklearn/metrics/tests/test_pairwise.py | 7 | 53724 | from types import GeneratorType
import numpy as np
from numpy import linalg
from scipy.sparse import dok_matrix, csr_matrix, issparse
from scipy.spatial.distance import cosine, cityblock, minkowski
from scipy.spatial.distance import cdist, pdist, squareform
try:
from scipy.spatial.distance import wminkowski
excep... | bsd-3-clause |
d00d/quantNotebooks | Notebooks/factor-lib/Z99-AlphasLibIndex.py | 1 | 48624 | """
The below is a list of many factors. Taken from several sources,
these factors have been forecast to generate alpha signals either
alone or in combination with eachother. These can form the basis
of factors trading algoithms.
NB: Morningstar cash_flow_statement, income_statement, earnings_report are quarterly
NB: M... | unlicense |
nist-ionstorage/electrode | electrode/system.py | 1 | 34891 | # -*- coding: utf8 -*-
#
# electrode: numeric tools for Paul traps
#
# Copyright (C) 2011-2012 Robert Jordens <jordens@phys.ethz.ch>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, e... | gpl-3.0 |
jahuth/convis | convis/streams.py | 1 | 59995 | """
The streams module contains `Stream` classes that can load different kinds of data.
Streams that are usable currently are: :class:`RandomStream`, :class:`SequenceStream` and :class:`ImageSequence`.
All others are experimental. If you plan on using any of them, you can open a `enhancement <https://github.com/jahut... | gpl-3.0 |
data-8/datascience | tests/test_tables.py | 1 | 53623 | import doctest
import re
import pytest
import warnings
import numpy as np
from numpy.testing import assert_array_equal
from datascience import *
import pandas as pd
#########
# Utils #
#########
@pytest.fixture(scope='function')
def table():
"""Setup Scrabble table"""
return Table().with_columns([
'... | bsd-3-clause |
sonnyhu/scikit-learn | sklearn/model_selection/tests/test_validation.py | 8 | 30626 | """Test the validation module"""
from __future__ import division
import sys
import warnings
import tempfile
import os
from time import sleep
import numpy as np
from scipy.sparse import coo_matrix, csr_matrix
from sklearn.utils.testing import assert_true
from sklearn.utils.testing import assert_false
from sklearn.uti... | bsd-3-clause |
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