repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
zfrenchee/pandas | pandas/tests/test_nanops.py | 1 | 42749 | # -*- coding: utf-8 -*-
from __future__ import division, print_function
from functools import partial
import pytest
import warnings
import numpy as np
import pandas as pd
from pandas import Series, isna
from pandas.core.dtypes.common import is_integer_dtype
import pandas.core.nanops as nanops
import pandas.util.test... | bsd-3-clause |
JohanComparat/nbody-npt-functions | bin/bin_DF/test_scripts/densityField-function-tracers.py | 1 | 39112 | # cd pySU/pyMultidark/trunk/bin/fortranfile-0.2.1/
import sys
import numpy as n
import os
from os.path import join
from astropy.io import fits
import time
import cPickle
from scipy.interpolate import interp1d
from scipy.optimize import curve_fit
from scipy.stats import scoreatpercentile as sc
from scipy.stats import n... | cc0-1.0 |
yuanbaowen521/tadbit | _pytadbit/experiment.py | 1 | 61780 | """
20 Feb 2013
"""
from pytadbit.parsers.hic_parser import read_matrix, HiC_data
from pytadbit.utils.extraviews import nicer
from pytadbit.utils.extraviews import tadbit_savefig
from pytadbit.utils.tadmaths import zscore
from pytadbit.utils.normalize_hic import iterative
from pytadbit.utils.hic_fil... | gpl-3.0 |
PragyaJaiswal/Protein-Sequence-Parser | virus/kmeans.py | 1 | 186963 | #!/usr/bin/env python3
import numpy as np
import operator
import json
import math
from collections import Counter
from sklearn.cluster import KMeans
from sklearn.decomposition import PCA
from matplotlib import pyplot
# Amino acid patterns: A C D E F G H I K L M N P Q R S T ... | gpl-2.0 |
AustereCuriosity/astropy | astropy/units/tests/test_quantity.py | 1 | 46289 | # coding: utf-8
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Test the Quantity class and related.
"""
from __future__ import (absolute_import, unicode_literals, division,
print_function)
import sys
import copy
import decimal
from fractions import Fraction
import num... | bsd-3-clause |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/tseries/resample.py | 1 | 41548 | from datetime import timedelta
import numpy as np
import warnings
import pandas as pd
from pandas.core.base import AbstractMethodError, GroupByMixin
from pandas.core.groupby import (BinGrouper, Grouper, _GroupBy, GroupBy,
SeriesGroupBy, groupby, PanelGroupBy)
from pandas.tseries.freq... | mit |
gfyoung/scipy | scipy/stats/stats.py | 1 | 202270 | # Copyright 2002 Gary Strangman. All rights reserved
# Copyright 2002-2016 The SciPy Developers
#
# The original code from Gary Strangman was heavily adapted for
# use in SciPy by Travis Oliphant. The original code came with the
# following disclaimer:
#
# This software is provided "as-is". There are no expressed or... | bsd-3-clause |
kaushik94/sympy | sympy/holonomic/holonomic.py | 1 | 94131 | """
This module implements Holonomic Functions and
various operations on them.
"""
from __future__ import print_function, division
from sympy import (Symbol, S, Dummy, Order, rf, meijerint, I,
solve, limit, Float, nsimplify, gamma)
from sympy.core.compatibility import range, ordered, string_types
from sympy.core.... | bsd-3-clause |
nigroup/pypet | pypet/naturalnaming.py | 1 | 134284 | """ Module to handle a trajectory's tree containing groups and leaves (aka parameters and results).
Contains the following classes:
* :class:`~pypet.naturalnaming.NaturalNamingInterface`
Class that handles interaction with the tree.
Usually functions of tree nodes allowing the manipulation of th... | bsd-3-clause |
wgmueller1/unicorn | app/views.py | 1 | 35436 | from app import app, es, db, flask_bcrypt, login_manager
from app import User, Organization
from flask import jsonify
from flask import make_response
from flask import render_template
from flask import url_for
from flask import redirect
from flask import Response
from flask import request
from flask import session
from... | mit |
goldentom42/predictor_stacker | linear_stacker/linear_stacker.py | 1 | 31000 | from __future__ import division
import os.path
import pandas as pd
import numpy as np
from sklearn.preprocessing import MinMaxScaler
#np.set_printoptions(precision=2)
class LinearPredictorStacker(object):
STANDARD = 0
SWAPPING = 1
def __init__(self,
metric=None,
maximize... | apache-2.0 |
doolanshire/Combat-Models | instructions_1921/battle_logic.py | 1 | 58342 | ############################################
# Instructions for Tactical Exercises 1921 #
# © Alvaro Radigales, 2021 - MIT licence #
############################################
# A Python implementation of the Royal Navy's 1921 wargame rules. It is designed to create a model of a battle from a
# series of external,... | mit |
kviebahn/beam-cam | BeamProfilingApplication.py | 1 | 86928 | # -*- coding: utf-8 -*-
"""
Created on Thu Mar 03 15:51:13 2016
This script starts the image viewer GUI for VRmagic USB Cameras.
TO DO: -test with more than one camera and add error handling
-implement the option to save data
-implement the possibility to choose a different colormap for the image
@auth... | gpl-3.0 |
vinodkc/spark | python/pyspark/pandas/namespace.py | 1 | 104577 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_load2-new10fold_10_09_2014_server.py | 1 | 38114 |
# coding: utf-8
# In[3]:
import sys, os
sys.path.append('../../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import numpy as np
import csv
from dateutil import parser
from datetime import timedelta
from sklearn import svm
import numpy ... | gpl-2.0 |
blond-admin/BLonD | blond/beam/distributions.py | 1 | 41365 |
# Copyright 2016 CERN. This software is distributed under the
# terms of the GNU General Public Licence version 3 (GPL Version 3),
# copied verbatim in the file LICENCE.md.
# In applying this licence, CERN does not waive the privileges and immunities
# granted to it by virtue of its status as an Intergovernmental Orga... | gpl-3.0 |
rubydatasystems/seniority_list | seniority_list/build_program_files.py | 1 | 35782 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
# seniority_list is an analytical tool used when seniority-based work
# groups merge. It brings modern data science to the area of labor
# integration, utilizing the powerful data analysis capabilities of Python
# scientific computing.
# Copyright (C) 2016-2017 Robert E... | gpl-3.0 |
cbertinato/pandas | pandas/tests/test_nanops.py | 1 | 42411 | from functools import partial
import warnings
import numpy as np
import pytest
import pandas.util._test_decorators as td
from pandas.core.dtypes.common import is_integer_dtype
import pandas as pd
from pandas import Series, isna
from pandas.core.arrays import DatetimeArray
import pandas.core.nanops as nanops
import ... | bsd-3-clause |
ctzhu/lifemodels | lifemodels/DeDayMLEcore.py | 1 | 107919 | #! /usr/bin/python
import cPickle
import os
import sys
from multiprocessing import Pool
from multiprocessing import cpu_count
from multiprocessing import freeze_support
from itertools import chain
import warnings
warnings.filterwarnings('ignore', 'The iteration is not making good progress')
warnings.filterwarnings('ign... | mit |
DanielAndreasen/ObservationTools | visibility.py | 2 | 30628 | # -*- coding: utf-8 -*-
from __future__ import print_function
import sys
import numpy as np
import datetime as dt
from dateutil import tz
import pickle
from random import choice
from PyAstronomy import pyasl
from astropy.coordinates import SkyCoord
from astropy.coordinates import name_resolve
import ephem
import argpar... | mit |
zodiac/incubator-airflow | airflow/www/views.py | 1 | 93956 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
cbertinato/pandas | pandas/tests/frame/test_to_csv.py | 1 | 47656 | import csv
from io import StringIO
import os
import numpy as np
import pytest
from pandas.errors import ParserError
import pandas as pd
from pandas import (
DataFrame, Index, MultiIndex, Series, Timestamp, date_range, read_csv,
to_datetime)
import pandas.core.common as com
from pandas.tests.frame.common impo... | bsd-3-clause |
hschovanec-usgs/magpy | magpy/stream.py | 1 | 493526 | #!/usr/bin/env python
"""
MagPy-General: Standard pymag package containing the following classes:
Written by Roman Leonhardt, Rachel Bailey 2011/2012/2013/2014
Written by Roman Leonhardt, Rachel Bailey, Mojca Miklavec 2015/2016
Version 0.3 (starting May 2016)
License:
https://creativecommons.org/licenses/by-nc-sa/4.0/l... | gpl-3.0 |
poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/scipy/special/add_newdocs.py | 2 | 94195 | # Docstrings for generated ufuncs
#
# The syntax is designed to look like the function add_newdoc is being
# called from numpy.lib, but in this file add_newdoc puts the
# docstrings in a dictionary. This dictionary is used in
# generate_ufuncs.py to generate the docstrings for the ufuncs in
# scipy.special at the C lev... | apache-2.0 |
mikegraham/dask | dask/dataframe/core.py | 1 | 96459 | from __future__ import absolute_import, division, print_function
import bisect
from collections import Iterator
from datetime import datetime
from distutils.version import LooseVersion
import math
import operator
from operator import getitem, setitem
from pprint import pformat
import uuid
import warnings
from toolz i... | bsd-3-clause |
kensugino/jGEM | jgem/merge.py | 1 | 67888 | """
.. module:: merge
:synopsis: module for merging multiple assemblies
.. moduleauthor:: Ken Sugino <ken.sugino@gmail.com>
"""
import subprocess
import os
import gzip
import logging
logging.basicConfig(level=logging.DEBUG)
LOG = logging.getLogger(__name__)
import shutil
import json
import pandas as PD
import... | mit |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/core/internals.py | 1 | 166771 | import copy
import itertools
import re
import operator
from datetime import datetime, timedelta, date
from collections import defaultdict
import numpy as np
from pandas.core.base import PandasObject
from pandas.core.common import (_possibly_downcast_to_dtype, isnull, _NS_DTYPE,
_TD_DTY... | gpl-2.0 |
nizamibilal/pyMODE-TASK | pyMODE_TASK.py | 1 | 83547 | #!/usr/bin/env python
#filename: pyMODE_TASK.py
import matplotlib
matplotlib.use('Agg')
import Tkinter
from Tkinter import *
import subprocess
from ttk import Separator, Style
import ttk
import Pmw
import tkMessageBox, tkFileDialog
import os
import webbrowser
import pymol
from pymol import cmd
import sys,os,math,re, f... | gpl-3.0 |
jprchlik/aia_mkmovie | aia_mkimage.py | 1 | 41335 | __version__ = "0.0.1 (2017/07/24)"
__authors__ = ['Jakub Prchlik <jakub.prchlik@cfa.harvard.edu>']
__email__ = "jakub.prchlik@cfa.harvard.edu"
import matplotlib
##fixes multiprocess issue (scrambled text in images)
matplotlib.use('agg',warn=False,force=True)
import sys
try:
import sunpy.map
from sunpy.cm i... | mit |
JulienPeloton/s4cmb | s4cmb/scanning_strategy.py | 1 | 39574 | #!/usr/bin/python
# Copyright (c) 2016-2021 Julien Peloton, Giulio Fabbian.
#
# This file is part of s4cmb
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
#... | gpl-3.0 |
schae234/Camoco | camoco/COB.py | 1 | 85716 | #!/usr/bin/python3
import warnings
warnings.simplefilter(action='ignore', category=FutureWarning)
import camoco.PCCUP as PCCUP
from .Camoco import Camoco
from .RefGen import RefGen
from .Locus import Locus,Gene
from .Expr import Expr
from .Tools import memoize,available_datasets
from .Term import Term
from .Ontology... | mit |
gfyoung/scipy | scipy/signal/signaltools.py | 1 | 119084 | # Author: Travis Oliphant
# 1999 -- 2002
from __future__ import division, print_function, absolute_import
import operator
import threading
import sys
import timeit
from . import sigtools, dlti
from ._upfirdn import upfirdn, _output_len
from scipy._lib.six import callable
from scipy._lib._version import NumpyVersion
... | bsd-3-clause |
qiita-spots/qp-qiime2 | qp_qiime2/tests/test_qiime2.py | 1 | 75339 | # -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
winklerand/pandas | pandas/tseries/offsets.py | 1 | 80939 | # -*- coding: utf-8 -*-
from datetime import date, datetime, timedelta
import functools
import operator
from pandas.compat import range
from pandas import compat
import numpy as np
from pandas.core.dtypes.generic import ABCSeries, ABCDatetimeIndex, ABCPeriod
from pandas.core.tools.datetimes import to_datetime, normal... | bsd-3-clause |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/core/groupby/groupby.py | 1 | 78323 | """
Provide the groupby split-apply-combine paradigm. Define the GroupBy
class providing the base-class of operations.
The SeriesGroupBy and DataFrameGroupBy sub-class
(defined in pandas.core.groupby.generic)
expose these user-facing objects to provide specific functionailty.
"""
import collections
from contextlib im... | apache-2.0 |
antgonza/qiita | qiita_db/metadata_template/test/test_util.py | 1 | 42066 | # -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
gfyoung/pandas | pandas/tests/arithmetic/test_period.py | 1 | 56280 | # Arithmetic tests for DataFrame/Series/Index/Array classes that should
# behave identically.
# Specifically for Period dtype
import operator
import numpy as np
import pytest
from pandas._libs.tslibs import IncompatibleFrequency, Period, Timestamp, to_offset
from pandas.errors import PerformanceWarning
import pandas... | bsd-3-clause |
TinyOS-Camp/DDEA-DEV | Archive/[14_10_10] DDEA sample code/pre_bn_state_processing.py | 1 | 90895 | # -*- coding: utf-8 -*-
"""
Created on Sat Apr 5 15:28:13 2014
@author: deokwooj
"""
from __future__ import division # To forace float point division
import numpy as np
from scipy import stats
from scipy.interpolate import interp1d
from sklearn import mixture
#from sklearn.cluster import Ward
from sklearn.cluster imp... | gpl-2.0 |
Gabvaztor/TFBoost | src/projects/Web_Traffic_Time/TFModels_backup.py | 1 | 64538 | # -*- coding: utf-8 -*-
"""
Author: @gabvaztor
StartDate: 04/03/2017
This file contains samples and overrides deep learning algorithms.
Style: "Google Python Style Guide"
https://google.github.io/styleguide/pyguide.html
"""
# -*- coding: utf-8 -*-
from __future__ import absolute_import
from __future__ import divisi... | apache-2.0 |
JanekWMJ/J-Rectifier | J_Rectifier/janek_georeferencer.py | 1 | 163369 | # -*- coding: utf-8 -*-
"""
/***************************************************************************
J_Rectifier
A QGIS plugin
a
-------------------
begin : 2017-01-18
git sha : $Format:%H$
copyright... | gpl-3.0 |
danellecline/stoqs | stoqs/loaders/CANON/__init__.py | 1 | 65549 | #!/usr/bin/env python
__author__ = 'Mike McCann'
__copyright__ = '2011'
__license__ = 'GPL v3'
__contact__ = 'mccann at mbari.org'
'''
Contains class for common routines for loading all CANON data
Mike McCann
MBARI 22 April 2012
@undocumented: __doc__ parser
@status: production
@license: GPL
'''
import os
i... | gpl-3.0 |
maciejkula/scipy | scipy/signal/filter_design.py | 1 | 103738 | """Filter design.
"""
from __future__ import division, print_function, absolute_import
import warnings
import numpy
from numpy import (atleast_1d, poly, polyval, roots, real, asarray, allclose,
resize, pi, absolute, logspace, r_, sqrt, tan, log10,
arctan, arcsinh, sin, exp, cosh,... | bsd-3-clause |
rasmusagren/platereader | platereader/plateimage.py | 1 | 48960 | #This should not be required since OpenCV will import, but it's a
#known issue with some numpy functions and PyInstaller
import numpy as np
import cv2
import matplotlib.pyplot as plt
import warnings
class PlateImage(object):
""" Represents a plate image and all the methods for analysing it."""
... | gpl-2.0 |
amolkahat/pandas | pandas/core/arrays/datetimes.py | 1 | 51321 | # -*- coding: utf-8 -*-
from datetime import datetime, timedelta, time
import warnings
import numpy as np
from pytz import utc
from pandas._libs import lib, tslib
from pandas._libs.tslib import Timestamp, NaT, iNaT
from pandas._libs.tslibs import (
normalize_date,
conversion, fields, timezones,
resolution... | bsd-3-clause |
ominux/scikit-learn | sklearn/linear_model/least_angle.py | 1 | 34383 | """
Least Angle Regression algorithm. See the documentation on the
Generalized Linear Model for a complete discussion.
"""
# Author: Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux
#
# License: BSD Style.
from math import log
import nump... | bsd-3-clause |
cseed/hail | hail/python/hail/methods/statgen.py | 1 | 129761 | import itertools
import math
import numpy as np
from typing import Dict, Callable
import builtins
import hail
import hail as hl
import hail.expr.aggregators as agg
from hail.expr import (Expression, ExpressionException, expr_float64, expr_call,
expr_any, expr_numeric, expr_locus, analyze, check_... | mit |
Erotemic/ibeis | ibeis/algo/hots/chip_match.py | 1 | 113344 | # -*- coding: utf-8 -*-
"""
python -m utool.util_inspect check_module_usage --pat="chip_match.py"
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import copy
import numpy as np
import utool as ut
import vtool_ibeis as vt
from os.path import join
from operator import xor
import six... | apache-2.0 |
plotly/python-api | packages/python/plotly/plotly/graph_objs/_barpolar.py | 1 | 61375 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Barpolar(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "barpolar"
_valid_props = {
"base",
"basesrc",
"customdata",
"customdat... | mit |
nhejazi/scikit-learn | sklearn/ensemble/gradient_boosting.py | 2 | 81326 | """Gradient Boosted Regression Trees
This module contains methods for fitting gradient boosted regression trees for
both classification and regression.
The module structure is the following:
- The ``BaseGradientBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regressio... | bsd-3-clause |
MJuddBooth/pandas | pandas/tests/internals/test_internals.py | 1 | 48924 | # -*- coding: utf-8 -*-
# pylint: disable=W0102
from collections import OrderedDict
from datetime import date, datetime
from distutils.version import LooseVersion
import itertools
import operator
import re
import sys
import numpy as np
import pytest
from pandas._libs.internals import BlockPlacement
from pandas.compat... | bsd-3-clause |
losonczylab/Zaremba_NatNeurosci_2017 | losonczy_analysis_bundle/lab/plotting/plotting_helpers.py | 1 | 71210 | """Plotting helper functions"""
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib.patches import Rectangle
import numpy as np
from matplotlib.offsetbox import AnchoredOffsetbox, AuxTransformBox
from matplotlib.offsetbox import VPacker, HPacker, TextArea
import itertools as it
import pandas as pd
... | mit |
jszymon/pacal | tests/test_piecewise.py | 1 | 71761 | from __future__ import print_function
import unittest
import operator
from pylab import show, subplot, pi
from numpy import linspace, multiply, add, divide
from numpy import unique, isnan, isscalar, diff
from numpy import Inf, sign, isinf, isfinite, exp, log, cos, sin
from numpy import logspace, sqrt, log10
from py... | gpl-3.0 |
thekingofkings/urban-flow-analysis | python/NBRegression.py | 2 | 38647 | """
Run the Negative Binomial Regression model
The regresion model use various features to predict the crime count in each
unit of study area (i.e. tract or Community Area)
Author: Hongjian
date:8/20/2015
# Main function
coefficients_pvalue()
It calls the external R script to do the random permutation. We use the... | mit |
EntilZha/ScalaFunctional | functional/test/test_functional.py | 1 | 34846 | # pylint: skip-file
import unittest
import array
from collections import namedtuple
from itertools import product
from functional.pipeline import Sequence, is_iterable, _wrap, extend
from functional.transformations import name
from functional import seq, pseq
Data = namedtuple("Data", "x y")
def pandas_is_installed... | mit |
awakenting/gif_fitting | fitgif/TwoComp_passive.py | 1 | 32604 | import matplotlib.pyplot as plt
from matplotlib import rcParams
import numpy as np
from numpy.linalg import inv
from .ThresholdModel import ThresholdModel
from .Filter_ThreeExpos import Filter_ThreeExpos
from .Filter_Powerlaw import Filter_Powerlaw
from . import Tools
from . import cython_helpers as cyth
class TwoC... | gpl-3.0 |
Delosari/dazer | bin/lib/ssp_functions/ssp_synthesis_tools.py | 1 | 42976 | from errno import ENOENT
from os import remove, getcwd
from sys import argv, exit
from collections import OrderedDict
from pandas import DataFrame, read_csv
from astropy.io.fits impo... | mit |
pr-omethe-us/PyKED | pyked/tests/test_chemked.py | 1 | 58465 | """
Test module for chemked.py
"""
# Standard libraries
import os
import pkg_resources
import warnings
from tempfile import TemporaryDirectory
import xml.etree.ElementTree as etree
from copy import deepcopy
# Third-party libraries
import numpy as np
import pytest
# Local imports
from ..validation import schema, OurVa... | bsd-3-clause |
badbytes/pymeg | gui/gtk/data_editor.py | 1 | 30723 | #!/usr/bin/python2
#!/usr/bin/env python
#
# Copyright 2010 dan collins <danc@badbytes.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Lice... | gpl-3.0 |
rs2/pandas | pandas/tests/scalar/timedelta/test_arithmetic.py | 1 | 33792 | """
Tests for scalar Timedelta arithmetic ops
"""
from datetime import datetime, timedelta
import operator
import numpy as np
import pytest
from pandas.compat.numpy import is_numpy_dev
import pandas as pd
from pandas import NaT, Timedelta, Timestamp, compat, offsets
import pandas._testing as tm
from pandas.core impo... | bsd-3-clause |
cactusbin/nyt | matplotlib/lib/matplotlib/axis.py | 1 | 78311 | """
Classes for the ticks and x and y axis
"""
from __future__ import division, print_function
from matplotlib import rcParams
import matplotlib.artist as artist
from matplotlib.artist import allow_rasterization
import matplotlib.cbook as cbook
import matplotlib.font_manager as font_manager
import matplotlib.lines as... | unlicense |
xuewei4d/scikit-learn | sklearn/utils/validation.py | 4 | 53907 | """Utilities for input validation"""
# Authors: Olivier Grisel
# Gael Varoquaux
# Andreas Mueller
# Lars Buitinck
# Alexandre Gramfort
# Nicolas Tresegnie
# Sylvain Marie
# License: BSD 3 clause
from functools import wraps
import warnings
import numbers
import nu... | bsd-3-clause |
mjabri/holoviews | holoviews/element/raster.py | 1 | 30239 | from operator import itemgetter
from itertools import product
import numpy as np
import colorsys
import param
from ..core import util
from ..core.data import DFColumns # FIXME: Waiting for new interface
from ..core import (OrderedDict, Dimension, NdMapping, Element2D,
Overlay, Element, Columns)
fro... | bsd-3-clause |
juanvallejo/auvsi_suas_competition | src/auvsi_suas_server/auvsi_suas/models.py | 1 | 39256 | """Models for the AUVSI SUAS System."""
import datetime
import logging
import numpy as np
import math
import time
from django.conf import settings
from django.contrib.auth.models import User
from django.db import models
from django.utils import timezone
from matplotlib import path as mplpath
from scipy.interpolate imp... | apache-2.0 |
bartosh/zipline | tests/test_perf_tracking.py | 1 | 77375 | #
# Copyright 2016 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
atumanov/ray | python/ray/tests/test_basic.py | 1 | 89592 | # coding: utf-8
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
from concurrent.futures import ThreadPoolExecutor
import json
import logging
from multiprocessing import Process
import os
import random
import re
import setproctitle
import s... | apache-2.0 |
erykoff/redmapper | redmapper/calibration/redsequencecal.py | 1 | 43213 | """Class for calibrating the color-based red-sequence model.
"""
import os
import numpy as np
import fitsio
import time
from scipy.optimize import least_squares
from ..configuration import Configuration
from ..fitters import MedZFitter, RedSequenceFitter, RedSequenceOffDiagonalFitter, CorrectionFitter
from ..redsequen... | apache-2.0 |
matk86/pymatgen | pymatgen/analysis/adsorption.py | 1 | 30056 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
from __future__ import absolute_import, print_function
"""
This module provides classes used to enumerate surface sites
and to find adsorption sites on slabs
"... | mit |
ClimbsRocks/scikit-learn | sklearn/model_selection/_search.py | 1 | 44853 | """
The :mod:`sklearn.model_selection._search` includes utilities to fine-tune the
parameters of an estimator.
"""
from __future__ import print_function
from __future__ import division
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Andreas... | bsd-3-clause |
thomasgurry/amplicon_sequencing_pipeline | scripts/preprocessing_16S.py | 1 | 37477 | """
OVERVIEW:
Python module for pre-processing FASTQ data into OTU tables.
"""
import numpy as np
import sys
import os, sys
import util
import Formatting
from bidict import *
import pandas as pd
from collections import defaultdict
import dbotu
def merge_reads((fwd_fastq, rev_fastq, merged_fastq, merge_log)):
... | mit |
cskyan/gesgnext | bin/gsx_helper.py | 1 | 133483 | #!/usr/bin/env python
# -*- coding=utf-8 -*-
###########################################################################
# Copyright (C) 2013-2016 by Caspar. All rights reserved.
# File Name: gsx_helper.py
# Author: Shankai Yan
# E-mail: sk.yan@my.cityu.edu.hk
# Created Time: 2016-04-10 14:55:16
#######################... | apache-2.0 |
shanot/imp | modules/pmi/pyext/src/analysis.py | 1 | 106818 | #!/usr/bin/env python
"""@namespace IMP.pmi.analysis
Tools for clustering and cluster analysis
"""
from __future__ import print_function
import IMP
import IMP.algebra
import IMP.em
import IMP.pmi
import IMP.pmi.tools
import IMP.pmi.output
import IMP.rmf
import RMF
import IMP.pmi.analysis
from operator import itemge... | gpl-3.0 |
nbokulich/short-read-tax-assignment | tax_credit/eval_framework.py | 1 | 43837 | #!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2014--, tax-credit development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------... | bsd-3-clause |
gregcaporaso/scikit-bio | skbio/stats/tests/test_composition.py | 4 | 52056 | # ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | bsd-3-clause |
CosmicFish/CosmicFish | python/cosmicfish_pylib/fisher_plot.py | 1 | 60370 | #----------------------------------------------------------------------------------------
#
# This file is part of CosmicFish.
#
# Copyright (C) 2015-2017 by the CosmicFish authors
#
# The CosmicFish code is free software;
# You can use it, redistribute it, and/or modify it under the terms
# of the GNU General Public L... | gpl-3.0 |
nhmc/Barak | barak/plot.py | 1 | 30466 | """ Plotting routines. """
# python 2.6+ compatibility
from __future__ import division, print_function, unicode_literals
try:
unicode
except NameError:
unicode = basestring = str
xrange = range
from math import log10
import numpy as np
import matplotlib.pyplot as pl
import matplotlib.pyplot as plt
from ma... | bsd-3-clause |
funbaker/astropy | astropy/visualization/wcsaxes/coordinate_helpers.py | 1 | 31368 | # Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This file defines the classes used to represent a 'coordinate', which includes
axes, ticks, tick labels, and grid lines.
"""
import numpy as np
from matplotlib.ticker import Formatter
from matplotlib.transforms import Affine2D, ScaledTranslation
fr... | bsd-3-clause |
johnnyliu27/openmc | openmc/tallies.py | 1 | 124653 | from collections.abc import Iterable, MutableSequence
import copy
import re
from functools import partial, reduce
from itertools import product
from numbers import Integral, Real
import operator
import warnings
from xml.etree import ElementTree as ET
import numpy as np
import pandas as pd
import scipy.sparse as sps
im... | mit |
LeeKamentsky/CellProfiler | cellprofiler/modules/tests/test_imagemath.py | 1 | 45087 | '''test_imagemath.py - test the ImageMath module
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All rights reserved.
Please see the AUTHORS file for c... | gpl-2.0 |
gfyoung/numpy | numpy/core/fromnumeric.py | 2 | 109577 | """Module containing non-deprecated functions borrowed from Numeric.
"""
from __future__ import division, absolute_import, print_function
import functools
import types
import warnings
import numpy as np
from .. import VisibleDeprecationWarning
from . import multiarray as mu
from . import overrides
from . import umat... | bsd-3-clause |
LTS5/connectomeviewer | cviewer/plugins/codeoracle/scripts.py | 1 | 32104 | writegexf = '''
""" Convert a connectome network to the GEXF format
readable by Gephi for further analysis and visualization """
import networkx as nx
import numpy as np
cnet = cfile.obj.get_by_name('connectome_freesurferaparc')
cnet.load()
outpath = 'out.gexf'
def fix_float_for_gexf(network):
for u,v,d in netwo... | bsd-3-clause |
Winand/pandas | pandas/core/indexes/timedeltas.py | 1 | 33999 | """ implement the TimedeltaIndex """
from datetime import timedelta
import numpy as np
from pandas.core.dtypes.common import (
_TD_DTYPE,
is_integer, is_float,
is_bool_dtype,
is_list_like,
is_scalar,
is_integer_dtype,
is_object_dtype,
is_timedelta64_dtype,
is_timedelta64_ns_dtype,
... | bsd-3-clause |
koverholt/ibis | ibis/impala/tests/test_ddl.py | 1 | 36158 | # Copyright 2014 Cloudera Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, so... | apache-2.0 |
markovmodel/molPX | molpx/visualize.py | 1 | 49188 |
__author__ = 'gph82'
from pyemma.plots import plot_free_energy as _plot_free_energy
import numpy as _np
from matplotlib.widgets import AxesWidget as _AxesWidget
from matplotlib.figure import Figure as _mplFigure
from matplotlib.axes import Axes as _mplAxes
from matplotlib.cm import get_cmap as _get_cmap
from matplot... | lgpl-3.0 |
rs2/pandas | pandas/plotting/_matplotlib/converter.py | 1 | 35495 | import contextlib
import datetime as pydt
from datetime import datetime, timedelta, tzinfo
import functools
from typing import Any, List, Optional, Tuple
from dateutil.relativedelta import relativedelta
import matplotlib.dates as dates
from matplotlib.ticker import AutoLocator, Formatter, Locator
from matplotlib.trans... | bsd-3-clause |
jrkerns/pylinac | pylinac/core/image.py | 1 | 39355 | """This module holds classes for image loading and manipulation."""
import copy
import io
import pathlib
from collections import Counter
from datetime import datetime
from io import BytesIO, BufferedReader
import re
import os.path as osp
import os
from typing import Union, Sequence, List, Any, Tuple, Optional, BinaryIO... | mit |
toobaz/pandas | pandas/core/dtypes/common.py | 1 | 52081 | """ common type operations """
from typing import Any, Callable, Union
import warnings
import numpy as np
from pandas._libs import algos, lib
from pandas._libs.tslibs import conversion
from pandas.compat import PY36
from pandas.core.dtypes.dtypes import (
CategoricalDtype,
DatetimeTZDtype,
ExtensionDtype... | bsd-3-clause |
predicador37/pyicane | pyicane/test/test.py | 1 | 30959 | # -*- coding: utf-8 -*-
"""Testing class for pyicane package.
"""
from pyicane import pyicane
import unittest
import logging
import requests
from datetime import datetime
import pandas as pd
from collections import OrderedDict
logging.basicConfig(level=logging.INFO)
LOGGER = logging.getLogger(__name__)
REQUESTS_LOG =... | apache-2.0 |
stefano-meschiari/gandalf | analysis/facade.py | 1 | 33740 | #==============================================================================
# facade.py
# Main gandalf library front-end when invoking gandalf from within python.
#
# This file is part of GANDALF :
# Graphical Astrophysics code for N-body Dynamics And Lagrangian Fluids
# https://github.com/gandalfcode/gandalf
... | gpl-2.0 |
rs2/pandas | pandas/tests/io/test_html.py | 1 | 39216 | from functools import partial
from importlib import reload
from io import BytesIO, StringIO
import os
import re
import threading
from urllib.error import URLError
import numpy as np
from numpy.random import rand
import pytest
from pandas.compat import is_platform_windows
from pandas.errors import ParserError
import p... | bsd-3-clause |
lvdongr/spark | python/pyspark/sql/functions.py | 1 | 111605 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
ryfeus/lambda-packs | Tensorflow_Pandas_Numpy/source3.6/pandas/io/stata.py | 1 | 108506 | """
Module contains tools for processing Stata files into DataFrames
The StataReader below was originally written by Joe Presbrey as part of PyDTA.
It has been extended and improved by Skipper Seabold from the Statsmodels
project who also developed the StataWriter and was finally added to pandas in
a once again improv... | mit |
pcrumley/Iseult | src/fields_plots.py | 1 | 84898 | #!/usr/bin/env python
import tkinter as Tk
from tkinter import ttk, messagebox
import matplotlib
import numpy as np
import numpy.ma as ma
import new_cmaps
import sys, traceback
from new_cnorms import PowerNormWithNeg, PowerNormFunc
import matplotlib.colors as mcolors
import matplotlib.gridspec as gridspec
import matplo... | gpl-3.0 |
flohorovicic/pygeomod | pygeomod/geogrid.py | 1 | 38875 | '''Module with classes and methods to analyse and process exported geomodel grids
Created on 21/03/2014
@author: Florian Wellmann (some parts originally developed by Erik Schaeffer)
'''
import numpy as np
try:
import matplotlib.pyplot as plt
except ImportError:
print("\n\n\tMatplotlib not installed - plotting... | mit |
humdings/zipline | zipline/pipeline/loaders/blaze/core.py | 1 | 36412 | """
Blaze integration with the Pipeline API.
For an overview of the blaze project, see blaze.pydata.org
The blaze loader for the Pipeline API is designed to allow us to load
data from arbitrary sources as long as we can execute the needed expressions
against the data with blaze.
Data Format
-----------
The blaze Pi... | apache-2.0 |
reflectometry/osrefl | osrefl/viewers/plot_2d.py | 1 | 36199 | # -*- coding: utf-8 -*-
from pylab import imshow,cm,colorbar,hot,show,xlabel,ylabel,connect, plot, figure, draw, axis, gcf,legend
from numpy import ones, sum, arange, transpose, log
import matplotlib.colors as colors
from matplotlib.widgets import RectangleSelector
from colormap import change_colormap
from matplotlib.... | bsd-3-clause |
meteoswiss-mdr/monti-pytroll | scripts/backup/plot_coalition2_20150727.py | 1 | 63098 | from datetime import datetime
import sys, string, os
import logging
sys.path.insert(0, "/home/lom/users/cll/pytroll/install/lib/python2.6/site-packages")
from mpop.satellites import GeostationaryFactory
from mpop.projector import get_area_def
from mpop.utils import debug_on
from pyresample import plot
import numpy as n... | lgpl-3.0 |
bajibabu/merlin | src/work_in_progress/oliver/run_dnn_hourly_check.py | 2 | 52699 |
import pickle
import gzip
import os, sys, errno
import time
import math
# numpy & theano imports need to be done in this order (only for some numpy installations, not sure why)
import numpy
# we need to explicitly import this in some cases, not sure why this doesn't get imported with numpy itself
import numpy.distut... | apache-2.0 |
jddunn/emoter | emoter/emote.py | 1 | 41515 | #!/usr/bin/python
# -*- coding: utf-8 -*-
encoding = "utf-8"
import codecs
import os
import sys
import random
import datetime
import time
import gc
from future.builtins import input
import pickle as pickle
# import shelve # Shelve used because it can manipulate serialized data unlike pickle, but it's a lot slower. To b... | mit |
IBT-FMI/SAMRI | samri/pipelines/glm.py | 1 | 75191 | from os import path, listdir, getcwd, remove
import inspect
import pandas as pd
import re
import shutil
import multiprocessing as mp
import nipype.interfaces.io as nio
import nipype.interfaces.utility as util
import nipype.pipeline.engine as pe
import os
from shutil import copyfile
from copy import deepcopy
from itert... | gpl-3.0 |
wwf5067/statsmodels | statsmodels/tsa/statespace/mlemodel.py | 1 | 47931 | """
State Space Model
Author: Chad Fulton
License: Simplified-BSD
"""
from __future__ import division, absolute_import, print_function
import numpy as np
import pandas as pd
from scipy.stats import norm
from .kalman_filter import (
KalmanFilter, FilterResults, INVERT_UNIVARIATE, SOLVE_LU
)
import statsmodels.tsa... | bsd-3-clause |
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