repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
PXke/invenio | invenio/legacy/webstat/engine.py | 1 | 105780 | ## This file is part of Invenio.
## Copyright (C) 2007, 2008, 2010, 2011, 2013 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of the
## License, or (at your option) any ... | gpl-2.0 |
iproduct/course-social-robotics | 11-dnn-keras/venv/Lib/site-packages/matplotlib/image.py | 1 | 66954 | """
The image module supports basic image loading, rescaling and display
operations.
"""
import math
import os
import logging
from numbers import Number
from pathlib import Path
import numpy as np
import PIL.PngImagePlugin
import matplotlib as mpl
import matplotlib.artist as martist
from matplotlib.backend_bases imp... | gpl-2.0 |
thesuperzapper/tensorflow | tensorflow/contrib/learn/python/learn/estimators/estimator.py | 1 | 55175 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
fashandge/deja | src/experiment/utilities.py | 1 | 31043 | import os
import re
import itertools
import time
import datetime
import string
import random
import nltk
import toolz
from nltk.corpus import wordnet as wn
#from nltk.corpus import verbnet as vn
#from nltk.corpus import framenet as fn
from nltk.stem import WordNetLemmatizer
from nltk.tag.stanford import POSTagger
from ... | mit |
davidwaroquiers/pymatgen | pymatgen/io/gaussian.py | 1 | 59149 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements input and output processing from Gaussian.
"""
import re
import warnings
import numpy as np
import scipy.constants as cst
from monty.io import zopen
from pymatgen.core.composition ... | mit |
pombredanne/metamorphosys-desktop | metamorphosys/META/analysis_tools/PYTHON_RICARDO/output_transportability/scripts/transportability.py | 1 | 36628 | """
Vehicle geometry (CAD) test bench:
Assess what types of transports the design will fit into.
Also evaluates whether lift eyes and tiedowns can support the expected loads.
"""
import _winreg
import sys
import os
from scipy.spatial import ConvexHull
import numpy as np
def query_analysis_tools():... | mit |
JWarmenhoven/seaborn | seaborn/tests/test_categorical.py | 1 | 91576 | import numpy as np
import pandas as pd
import scipy
from scipy import stats, spatial
import matplotlib as mpl
import matplotlib.pyplot as plt
from distutils.version import LooseVersion
import nose.tools as nt
import numpy.testing as npt
from numpy.testing.decorators import skipif
from . import PlotTestCase
from .. i... | bsd-3-clause |
h2oai/h2o-dev | h2o-py/h2o/h2o.py | 1 | 72871 | # -*- encoding: utf-8 -*-
"""
h2o -- module for using H2O services.
:copyright: (c) 2016 H2O.ai
:license: Apache License Version 2.0 (see LICENSE for details)
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import logging
import os
import warnings
import webbrowser
import type... | apache-2.0 |
jbloom/mapmuts | src/plot.py | 1 | 104900 | """Module for performing plotting for ``mapmuts`` package.
This module uses ``pylab`` and ``matplotlib`` to make plots. These plots will
fail if ``pylab`` and ``matplotlib`` are not available for importation. Before
running any function in this module, you can run the `PylabAvailable`
function to determine if ``pylab`... | gpl-3.0 |
mattvonrocketstein/smash | smashlib/ipy3x/core/interactiveshell.py | 1 | 137505 | # -*- coding: utf-8 -*-
"""Main IPython class."""
#-----------------------------------------------------------------------------
# Copyright (C) 2001 Janko Hauser <jhauser@zscout.de>
# Copyright (C) 2001-2007 Fernando Perez. <fperez@colorado.edu>
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distribu... | mit |
drnesr/NeuroCharter | NeuroCharter.py | 1 | 326518 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# from __future__ import print_function
import collections
import copy
import csv
import itertools
import math
import os
import random
import re
import shelve
import sys
import time
from datetime import datetime as dt
from datetime import timedelta
from subp... | mit |
beiko-lab/gengis | bin/Lib/site-packages/numpy/linalg/linalg.py | 1 | 64922 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd... | gpl-3.0 |
desihub/desispec | py/desispec/bootcalib.py | 1 | 66424 | """
desispec.bootcalib
==================
Utility functions to perform a quick calibration of DESI data
TODO:
1. Expand to r, i cameras
2. QA plots
3. Test with CR data
"""
from __future__ import print_function, absolute_import, division
import numpy as np
import copy
import pdb
import yaml
import glob
import math
i... | bsd-3-clause |
yugangzhang/chxanalys | chxanalys/chx_specklecp.py | 1 | 63147 | """
X-ray speckle visibility spectroscopy(XSVS) - Dynamic information of
the speckle patterns are obtained by analyzing the speckle statistics
and calculating the speckle contrast in single scattering patterns.
This module will provide XSVS analysis tools
"""
from __future__ import (absolute_import, division, print_fu... | bsd-3-clause |
hughests/decon1d | decon_3.0.py | 1 | 102926 | from __future__ import print_function
from __future__ import division
from builtins import zip
from builtins import range
from past.utils import old_div
import numpy as n
import seaborn as sns
import sys
import random
import pylab as p
import math as m
from matplotlib.backends.backend_pdf import PdfPages
import scipy.s... | lgpl-3.0 |
jmontoyam/mne-python | mne/viz/utils.py | 2 | 58984 | """Utility functions for plotting M/EEG data
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# ... | bsd-3-clause |
geomf/omf-fork | omf/milToGridlab.py | 1 | 79845 | # Portions Copyright (C) 2015 Intel Corporation
''' Convert a Milsoft Windmil feeder model into an OMF-compatible version. '''
import feeder
import csv
import random
import math
import copy
from StringIO import StringIO
import logging
from omf.common.plot import Plot
logger = logging.getLogger(__name__)
def convert... | gpl-2.0 |
aidan-cfse/CPACS2SUMO | CPACS2SUMO/CPACS2SUMO.py | 1 | 35331 | #===============================================================================
# Script to convert CPACS file geometry into SUMO geometry
# Works with Python 2.7
# Author : Aidan Jungo
# Date of creation: 2017-03-03
#==================================
# ---Input---
# CPACS file
# ---Output---
# SUMO file
#==========... | apache-2.0 |
uvchik/pvlib-python | pvlib/solarposition.py | 1 | 36763 | """
Calculate the solar position using a variety of methods/packages.
"""
# Contributors:
# Rob Andrews (@Calama-Consulting), Calama Consulting, 2014
# Will Holmgren (@wholmgren), University of Arizona, 2014
# Tony Lorenzo (@alorenzo175), University of Arizona, 2015
from __future__ import division
import os
import da... | bsd-3-clause |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/core/frame.py | 1 | 208315 | """
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | mit |
google/or-tools | examples/python/cvrptw_plot.py | 1 | 30119 | # This Python file uses the following encoding: utf-8
# Copyright 2015 Tin Arm Engineering AB
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
... | apache-2.0 |
timovanopstal/nutils | nutils/function.py | 1 | 107226 | # -*- coding: utf8 -*-
#
# Module FUNCTION
#
# Part of Nutils: open source numerical utilities for Python. Jointly developed
# by HvZ Computational Engineering, TU/e Multiscale Engineering Fluid Dynamics,
# and others. More info at http://nutils.org <info@nutils.org>. (c) 2014
"""
The function module defines the :clas... | mit |
toobaz/pandas | pandas/tests/io/pytables/test_pytables.py | 2 | 195267 | from contextlib import contextmanager
import datetime
from datetime import timedelta
from distutils.version import LooseVersion
from io import BytesIO
import os
import re
import tempfile
from warnings import catch_warnings, simplefilter
import numpy as np
import pytest
from pandas.compat import PY36, is_platform_litt... | bsd-3-clause |
lthurlow/Network-Grapher | proj/external/matplotlib-1.2.1/build/lib.linux-i686-2.7/matplotlib/backends/backend_tkagg.py | 2 | 34663 | # Todd Miller jmiller@stsci.edu
from __future__ import division, print_function
import os, sys, math
import os.path
import Tkinter as Tk, FileDialog
# Paint image to Tk photo blitter extension
import matplotlib.backends.tkagg as tkagg
from matplotlib.backends.backend_agg import FigureCanvasAgg
import matplotlib.... | mit |
dssg/wikienergy | disaggregator/build/pandas/pandas/io/tests/test_parsers.py | 1 | 135338 | # -*- coding: utf-8 -*-
# pylint: disable=E1101
from datetime import datetime
import csv
import os
import sys
import re
import nose
import platform
from numpy import nan
import numpy as np
from pandas.io.common import DtypeWarning
from pandas import DataFrame, Series, Index, MultiIndex, DatetimeIndex
from pandas.com... | mit |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/_pointcloud.py | 1 | 49878 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Pointcloud(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "pointcloud"
_valid_props = {
"customdata",
"customdatasrc",
"hoverinfo",
... | mit |
ddempsey/PyFEHM | fgrid.py | 1 | 64942 | """For manipulating FEHM grids."""
"""
Copyright 2013.
Los Alamos National Security, LLC.
This material was produced under U.S. Government contract DE-AC52-06NA25396 for
Los Alamos National Laboratory (LANL), which is operated by Los Alamos National
Security, LLC for the U.S. Department of Energy. The U.S. Governme... | lgpl-2.1 |
mikestock/intf-tools | intf_tools.py | 1 | 66842 | #!/usr/bin/python
"""intf_toos
The main shared library for interferometer processing type operations.
Included toos for displaying, processing and simulating lightning
interferometer type data.
"""
########
# Written by Michael Stock, 2012
# versions:
# the intf_tools version must match intf_process for processi... | gpl-2.0 |
winklerand/pandas | pandas/tests/io/formats/test_to_html.py | 1 | 48020 | # -*- coding: utf-8 -*-
import re
from textwrap import dedent
from datetime import datetime
from distutils.version import LooseVersion
import pytest
import numpy as np
import pandas as pd
from pandas import compat, DataFrame, MultiIndex, option_context, Index
from pandas.compat import u, lrange, StringIO
from pandas.... | bsd-3-clause |
cactusbin/nyt | matplotlib/lib/matplotlib/tri/triinterpolate.py | 1 | 65588 | """
Interpolation inside triangular grids.
"""
from __future__ import print_function
from matplotlib.tri import Triangulation
from matplotlib.tri.trifinder import TriFinder
from matplotlib.tri.tritools import TriAnalyzer
import numpy as np
import warnings
__all__ = ('TriInterpolator', 'LinearTriInterpolator', 'CubicTr... | unlicense |
danielhanchen/sciblox | sciblox/sciblox.py | 1 | 73696 | #------------- Daniel Han-Chen 2017
#------------- https://github.com/danielhanchen/sciblox
#------------- SciBlox v0.2.8
#-------------
maxcats = 15
import warnings
warnings.filterwarnings("ignore")
true = True; TRUE = True
false = False; FALSE = False
#-----------------------------
import pandas as pd, numpy as np,... | mit |
dssg/homelessness-public | clean.py | 2 | 54867 | """The cleaning module.
Really the only method that's important for a user to know about is :func:`load`. :func:`clean` is used to clean raw
data into `clean/`, but is wrapped by `make`, (see `Makefile` and `README` for more info`).
There are several functions that operate on `master`, and they all function on `mast... | mit |
JudoWill/ResearchNotebooks | CanabHIVDAnalysis.py | 1 | 36686 | # -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <headingcell level=1>
# Cannabinoid Effect on HIVD score
# <markdowncell>
# Here I am looking to find the effect of Cannabinoid Use on HIVD score. HIVD score is a value that ranges from 0-12 with anything below 10 marking 'impaired' and >=10 implying not impaired... | mit |
GuessWhoSamFoo/pandas | pandas/core/resample.py | 1 | 58002 | import copy
from datetime import timedelta
from textwrap import dedent
import warnings
import numpy as np
from pandas._libs import lib
from pandas._libs.tslibs import NaT, Timestamp
from pandas._libs.tslibs.frequencies import is_subperiod, is_superperiod
from pandas._libs.tslibs.period import IncompatibleFrequency
im... | bsd-3-clause |
Didou09/tofu | tofu/data/_core_new.py | 1 | 41066 | # -*- coding: utf-8 -*-
# Built-in
import sys
import os
# import itertools as itt
import copy
import warnings
from abc import ABCMeta, abstractmethod
import inspect
# Common
import numpy as np
import scipy.interpolate as scpinterp
# import matplotlib.pyplot as plt
# from matplotlib.tri import Triangulation as mplTri
... | mit |
jrg365/gpytorch | examples/LBFGS.py | 1 | 42604 | import torch
import numpy as np
import matplotlib.pyplot as plt
from functools import reduce
from copy import deepcopy
from torch.optim import Optimizer
def is_legal(v):
"""
Checks that tensor is not NaN or Inf.
Inputs:
v (tensor): tensor to be checked
"""
legal = not torch.isnan(v).any(... | mit |
dwettstein/pattern-recognition-2016 | mlp/gaussian_process/gaussian_process.py | 1 | 35002 | # -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# Licence: BSD 3 clause
from __future__ import print_function
import numpy as np
from scipy import linalg, optimize
from sklearn.base import BaseEstimator, RegressorMixin
from skl... | mit |
roshantha9/AbstractManycoreSim | src/libApplicationModel/AdaptiveGoPGenerator_v2.py | 1 | 59507 | import pprint
import sys, os
import math, random
import numpy as np
import copy
import csv
import bisect
import json
import itertools
from operator import itemgetter
import networkx as nx
import operator
import time, timeit
from collections import Counter, Sequence
from collections import OrderedDict
import matplotli... | gpl-3.0 |
qbilius/conv-exp | base.py | 1 | 34655 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import os, glob
import shutil, io, urllib, zipfile # for downloading datasets
import pickle
from collections import OrderedDict
import numpy as np
import scipy.stats
im... | gpl-3.0 |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/core/internals.py | 1 | 169308 | import copy
import itertools
import re
import operator
from datetime import datetime, timedelta, date
from collections import defaultdict
import numpy as np
from numpy import percentile as _quantile
from pandas.core.base import PandasObject
from pandas.core.common import (_possibly_downcast_to_dtype, isnull, _NS_DTY... | mit |
bnaul/scikit-learn | sklearn/model_selection/_validation.py | 1 | 65629 | """
The :mod:`sklearn.model_selection._validation` module includes classes and
functions to validate the model.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Raghav RV <rvraghav93@gma... | bsd-3-clause |
cossatot/slip_rate_calculator | slip_rate_tools/slip_rate_tools.py | 1 | 38647 | # -*- coding: utf-8 -*-
from __future__ import division
import time
from collections import OrderedDict
import itertools
import ast
import numpy as np
import numpy.ma as ma
#import Splines
#from Splines import spline1d
from scipy.interpolate import interp1d
from scipy.optimize import minimize, curve_fit, le... | mit |
dssg/wikienergy | disaggregator/build/pandas/pandas/tools/tests/test_merge.py | 1 | 91226 | # pylint: disable=E1103
import nose
from datetime import datetime
from numpy.random import randn
from numpy import nan
import numpy as np
import random
import pandas as pd
from pandas.compat import range, lrange, lzip, zip, StringIO
from pandas import compat
from pandas.tseries.index import DatetimeIndex
from pandas... | mit |
wkiri/DEMUD | demud/dataset_mastcam.py | 1 | 42501 | #!/usr/bin/env python
# File: dataset_kepler.py
# Author: James Bedell, 2014-06-27
#
# Kepler data set reader and plotter for light curves
#
# Copyright 2013-2015, by the California Institute of Technology. ALL
# RIGHTS RESERVED. United States Government Sponsorship
# acknowledged. Any commercial use must be negotiate... | apache-2.0 |
yugangzhang/chxanalys | chxanalys/PhaseRetrieval.py | 1 | 33348 | """
Phase Retrieval Codes for NSLS-II Coherent Hard X-ray beamline
Adapted from:
M180G Phase Retrieval
Author: AJ Pryor
Jianwei (John) Miao Coherent Imaging Group
University of California, Los Angeles
Copyright (c) 2016. All Rights Reserved.
Modified by: Yuan Hung Lo (2017)
"""
from PIL import Imag... | bsd-3-clause |
Hugo1991/TFM | genetic.py | 1 | 38934 |
import networkx as nx
import random as rnd
import matplotlib.pyplot as plt
import numpy as np
import multiprocessing as mp
from numpy import sqrt
from enum import Enum
class execution_type(Enum):
static_part1 = 0
static_part2 = 1
static = 2
dynamic = 3
class weight_edges(Enum):
linear = 0
... | apache-2.0 |
rs2/pandas | pandas/_vendored/typing_extensions.py | 1 | 85690 | """
vendored copy of typing_extensions, copied from
https://raw.githubusercontent.com/python/typing/master/typing_extensions/src_py3/typing_extensions.py
on 2020-08-30.
typing_extensions is distributed under the Python Software Foundation License.
This is not a direct copy/paste of the original file. Changes are:
... | bsd-3-clause |
notestaff/cosi | cosi/trajsim.py | 1 | 146961 | #!/usr/bin/env python
#
# $File: utils.py $
# $LastChangedDate: 2015-04-03 16:50:47 -0500 (Fri, 03 Apr 2015) $
# $Rev: 4962 $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (... | gpl-3.0 |
rs2/pandas | pandas/tests/reshape/test_melt.py | 1 | 37168 | import numpy as np
import pytest
import pandas as pd
from pandas import DataFrame, lreshape, melt, wide_to_long
import pandas._testing as tm
class TestMelt:
def setup_method(self, method):
self.df = tm.makeTimeDataFrame()[:10]
self.df["id1"] = (self.df["A"] > 0).astype(np.int64)
self.df["... | bsd-3-clause |
C0rvus/iAMA_Reddit_Bachelor | python/a_thread_lifespan_n_average_commenttime.py | 1 | 36470 | # Sources used within this class:
# 1. (27.02.2016 @ 14:22) -
# https://stackoverflow.com/questions/20214497/annoying-white-space-in-bar-chart-matplotlib-python
# 2. (27.02.2016 @ 16:30) -
# http://www.programiz.com/python-programming/break-continue
# 3. (26.03.2016 @ 18:03) -
# https://stackoverflow.com/questions/1240... | gpl-3.0 |
chrisdjscott/Atoman | atoman/gui/dialogs/simpleDialogs.py | 1 | 34621 | # -*- coding: utf-8 -*-
"""
Additional dialogs.
@author: Chris Scott
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import unicode_literals
import os
import copy
import logging
from PySide2 import QtGui, QtCore, QtWidgets
import numpy as np
import math as math
fro... | mit |
barnabytprowe/great3-public | great3sims/galaxies.py | 1 | 51950 | # Copyright (c) 2014, the GREAT3 executive committee (http://www.great3challenge.info/?q=contacts)
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without modification, are permitted
# provided that the following conditions are met:
#
# 1. Redistributions of source code must retain... | bsd-3-clause |
kejbaly2/metrique | metrique/utils.py | 1 | 48169 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
# Author: "Chris Ward" <cward@redhat.com>
'''
metrique.utils
~~~~~~~~~~~~~~
This module contains utility functions shared between
metrique sub-modules.
'''
from __future__ import unicode_literals, absolute_import
imp... | gpl-3.0 |
BursonLab/Silica-Coding-Project | centerFinder.py | 1 | 54259 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Thu Apr 19 14:48:58 2018
@author: danwall & thomasmarsh
"""
import math
import numpy
import matplotlib
matplotlib.use('TkAgg')
from skimage import io
from skimage import feature
from skimage import draw
from skimage import util
from skimage import color... | apache-2.0 |
Silmathoron/NNGT | nngt/plot/animations.py | 1 | 35919 | #!/usr/bin/env python
#-*- coding:utf-8 -*-
#
# This file is part of the NNGT project to generate and analyze
# neuronal networks and their activity.
# Copyright (C) 2015-2019 Tanguy Fardet
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License a... | gpl-3.0 |
flohorovicic/pynoddy | pynoddy/experiment/__init__.py | 1 | 33480 | '''
Base class from which PyNoddy experiments should inherit.
Much basic functionality (random perturbation, plotting etc. is defined here).
Thought: perhaps drawing functions etc. should be moved into NoddyOutput class?
@author: flohorovicic, samthiele
'''
import os
import numpy as np
import matplotlib.pyplot as pl... | gpl-2.0 |
bosscha/alma-calibrator | src/lines/calibratorLines.py | 1 | 35358 | """
This program aims to detect lines in ALMA calibratos:
- Extract the spw from the calibrators
- analyze the spectra (wavelet filtering, etc)
- give a scoring from the presence of lines
- produce plots of the spw
HISTORY:
2014.06.05:
- first shot
2014.06.06:
- create report
-... | gpl-2.0 |
Kleptobismol/scikit-bio | skbio/stats/ordination/tests/test_ordination.py | 1 | 36272 | # ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | bsd-3-clause |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/core/series.py | 1 | 89831 | """
Data structure for 1-dimensional cross-sectional and time series data
"""
from __future__ import division
# pylint: disable=E1101,E1103
# pylint: disable=W0703,W0622,W0613,W0201
import types
import warnings
from numpy import nan, ndarray
import numpy as np
import numpy.ma as ma
from pandas.core.common import (i... | mit |
dhruve/spark | python/pyspark/sql/dataframe.py | 1 | 73144 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
genialis/resolwe-bio | resolwe_bio/tests/processes/test_upload.py | 1 | 34059 | import os
from pathlib import Path
from resolwe.flow.models import Data
from resolwe.test import tag_process, with_resolwe_host
from resolwe_bio.utils.test import KBBioProcessTestCase, skipUnlessLargeFiles
class UploadProcessorTestCase(KBBioProcessTestCase):
@tag_process("upload-bam", "upload-bam-indexed")
... | apache-2.0 |
runawayhorse001/LearningApacheSpark | pyspark/sql/session.py | 1 | 36222 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | mit |
krischer/LASIF | lasif/colors.py | 1 | 55414 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Colors and colormaps for plotting.
:copyright:
Lion Krischer (krischer@geophysik.uni-muenchen.de), 2015
:license:
GNU General Public License, Version 3
(http://www.gnu.org/copyleft/gpl.html)
"""
from matplotlib.colors import LinearSegmentedColormap
# Prett... | gpl-3.0 |
dricciardelli/vae2vec | vae_def_oh.py | 1 | 37009 | ''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | mit |
3DGenomes/tadbit | _pytadbit/utils/extraviews.py | 1 | 56664 | """
06 Aug 2013
"""
from warnings import warn
from subprocess import Popen
from itertools import product
import numpy as np
from scipy import interpolate
try:
from matplotlib.ticker import MultipleLocator
from matplotlib import pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
... | gpl-3.0 |
evanthebouncy/nnhmm | graph4/saved_graph.py | 1 | 39016 | import networkx as nx
import matplotlib.pyplot as plt
from graph import *
G_V = [(0.3464278051698345, 0.01071151392083236), (0.18646481364992717, 0.7424897440715547), (0.6814995915623083, 0.03346594836609995), (0.46692555934829993, 0.1068926497928443), (0.8289230447367343, 0.6184911598073255), (0.6089151825983125, 0.8... | mit |
icexelloss/arrow | python/pyarrow/tests/test_array.py | 1 | 36308 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
classner/spearmint-win | GPConstrainedEIChooser.py | 2 | 54583 | ##
# Copyright (C) 2012 Jasper Snoek, Hugo Larochelle and Ryan P. Adams
#
# This code is written for research and educational purposes only to
# supplement the paper entitled
# "Practical Bayesian Optimization of Machine Learning Algorithms"
# by Snoek, Larochelle and Adams
# Advances in Neural Information Processing... | gpl-3.0 |
neuropoly/spinalcordtoolbox | spinalcordtoolbox/centerline/nurbs.py | 1 | 48551 | #!/usr/bin/env python
# @package nurbs
# Approximate a 3D curve with a B-Spline curve from either a set of data points or a set of control points
#
# If a set of data points is given, it generates a B-spline that either approximates the curve in the least square
# sense or interpolates the curve. It also computes the ... | mit |
trueyao/spark-lever | python/pyspark/sql/dataframe.py | 2 | 36076 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
boada/redshiftCode | ifu_visualTemplateRedshift5.py | 1 | 58695 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Moving sky plot to bottom of object spectrum plot, added badlines
# stuff,restricted z range
# for cross correlation to slider z +/-0.3
#
# Adding xcsao button - need shady iraf import shenanigans, otherwise iraf
# causes feedback between tk
# widgets and variables to n... | mit |
ratnania/pigasus | python/fem/basicPDE.py | 1 | 53168 | # -*- coding: UTF-8 -*-
#! /usr/bin/python
import sys
import numpy as np
from scipy.sparse.linalg import cg as ConjugateGradient
from caid.cad_geometry import cad_geometry
from caid.cad_geometry import entier_vers_couple as face_to_bc
from .constants import *
from .field import *
from .norm import *
from .grids impor... | mit |
enricopal/STEM | src/STEM.py | 1 | 34025 | import os
import numpy as np
import pandas as pd
import subprocess
import optparse
from collections import Counter
from sklearn.svm import SVC
#from sklearn import model_selection
from sklearn import model_selection
from sklearn.externals import joblib
import stacking_create_training_set
import xml.etree.ElementTree as... | apache-2.0 |
dgary50/eovsa | solpnt.py | 1 | 33295 | '''
Module for accessing, analyzing and plotting SOLPNTCAL data'''
#
# History:
# 2014-Nov-29 DG
# Extensive changes to utilize SQL database. Also made gausfit()
# routine more general.
# 2014-Dec-02 DG
# Completed new routines find_solpnt(), get_solpnt(), and renamed
# the older routines ... | gpl-2.0 |
bthirion/scikit-learn | sklearn/linear_model/coordinate_descent.py | 2 | 82307 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
from abc import ABCMeta, abstractmethod
import n... | bsd-3-clause |
anntzer/scikit-learn | sklearn/metrics/pairwise.py | 5 | 69978 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Robert Layton <robertlayton@gmail.com>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Philippe Gervais <philippe.gervais@inria.fr>
# Lars Buitinck
... | bsd-3-clause |
HesselTjeerdsma/Cyber-Physical-Pacman-Game | Algor/flask/lib/python2.7/site-packages/tqdm/_tqdm.py | 1 | 44456 | """
Customisable progressbar decorator for iterators.
Includes a default (x)range iterator printing to stderr.
Usage:
>>> from tqdm import trange[, tqdm]
>>> for i in trange(10): #same as: for i in tqdm(xrange(10))
... ...
"""
from __future__ import absolute_import
# integer division / : float, // : int
from... | apache-2.0 |
plotly/python-api | packages/python/plotly/plotly/graph_objs/layout/polar/_radialaxis.py | 1 | 83464 | from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class RadialAxis(_BaseLayoutHierarchyType):
# class properties
# --------------------
_parent_path_str = "layout.polar"
_path_str = "layout.polar.radialaxis"
_valid_props = {
"angle",... | mit |
scienceguyrob/SKA-TestVectorGenerationPipeline | Deploy/pulsar_injection_pipeline/src/CandidateParGenerator.py | 2 | 74370 | ## @package PARS
# A module used to create Tempo2 compatible par files.
#
# Author: Rob Lyon
# Email : robert.lyon@manchester.ac.uk
# web : www.scienceguyrob.com
# Start normal non-doxygen docstring...
"""
**************************************************************************
| ... | gpl-3.0 |
tkcroat/Augerquant | Development/Auger_integquant_functions_11Nov16backup.py | 1 | 64350 | # -*- coding: utf-8 -*-
"""
Created on Wed May 11 08:08:52 2016
@author: tkc
"""
import re
from collections import defaultdict
import pandas as pd
import numpy as np
import scipy
import scipy.stats
from scipy import optimize
from math import factorial # used by Savgol matrix
from scipy.optimize import cu... | mit |
CompPhysics/MachineLearning | doc/src/LectureNotes/_build/jupyter_execute/chapter7.py | 1 | 38533 | # Support Vector Machines, overarching aims
A Support Vector Machine (SVM) is a very powerful and versatile
Machine Learning method, capable of performing linear or nonlinear
classification, regression, and even outlier detection. It is one of
the most popular models in Machine Learning, and anyone interested in
Machi... | cc0-1.0 |
rsheftel/raccoon | raccoon/series.py | 1 | 32944 | """
Series class
"""
from abc import ABC, abstractmethod
from bisect import bisect_left, bisect_right
from collections import OrderedDict
from itertools import compress
from tabulate import tabulate
from raccoon.sort_utils import sorted_exists, sorted_index, sorted_list_indexes
class SeriesBase(ABC):
"""
Ba... | mit |
jreback/pandas | pandas/tests/arithmetic/test_datetime64.py | 1 | 91671 | # Arithmetic tests for DataFrame/Series/Index/Array classes that should
# behave identically.
# Specifically for datetime64 and datetime64tz dtypes
from datetime import datetime, time, timedelta
from itertools import product, starmap
import operator
import warnings
import numpy as np
import pytest
import pytz
from pa... | bsd-3-clause |
NicWayand/xray | xarray/test/test_backends.py | 1 | 44435 | from io import BytesIO
from threading import Lock
import contextlib
import itertools
import os.path
import pickle
import shutil
import tempfile
import unittest
import sys
import numpy as np
import pandas as pd
import xarray as xr
from xarray import Dataset, open_dataset, open_mfdataset, backends, save_mfdataset
from ... | apache-2.0 |
foolcage/fooltrader | fooltrader/api/fundamental.py | 1 | 51633 | # -*- coding: utf-8 -*-
import logging
import os
import pandas as pd
from fooltrader.api.event import get_report_event_date
from fooltrader.api.technical import to_security_item
from fooltrader.contract.files_contract import get_balance_sheet_path, get_income_statement_path, \
get_cash_flow_statement_path, get_f... | mit |
CovingtonResearchGroup/olm | olm/calcite.py | 1 | 54675 | #####################################################################
## Functions related to water chemistry and dissolution of Calcite ##
#####################################################################
import numpy as np
import pandas
from .general import *
from scipy.optimize import brentq#, fminbound
from sc... | mit |
tum-camp/survival-support-vector-machine | tests/test_survival_svm.py | 1 | 33595 | import unittest
from functools import partial
from os.path import join, dirname
import numpy
from numpy.testing import TestCase, run_module_suite, assert_array_almost_equal, assert_array_equal
from sklearn.decomposition import KernelPCA
from sklearn.metrics import mean_squared_error
from survival.bintrees import AVLT... | gpl-3.0 |
sauloal/cnidaria | scripts/venv/lib/python2.7/site-packages/pandas/core/frame.py | 1 | 191442 | """
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | mit |
buguen/pylayers | pylayers/antprop/rays.py | 1 | 113792 | #!/usr/bin/python
# -*- coding: latin1 -*-
"""
Class Rays
==========
This modules contains Rays class
.. autosummary::
:toctree: generated
Rays.__init__
Rays.__len__
Rays.__repr__
Rays.sort
Rays.extract
Rays.mirror
Rays.to3D
Rays.locbas
Rays.fillinter
Rays.length
Rays... | lgpl-3.0 |
glennhickey/teHmm | basehmm.py | 1 | 32410 | #!/usr/bin/env python
#Copyright (C) 2014 by Glenn Hickey
#
#Released under the MIT license, see LICENSE.txt
"""
Moving the multinomial hmm from Scikit-Learn into this package so I can speed up the dynamic programming. Also take the opportunity to cut off the dependenciy to scikit which was a bit of an overkill sinc... | mit |
shoyer/xarray | xarray/coding/cftime_offsets.py | 1 | 35760 | """Time offset classes for use with cftime.datetime objects"""
# The offset classes and mechanisms for generating time ranges defined in
# this module were copied/adapted from those defined in pandas. See in
# particular the objects and methods defined in pandas.tseries.offsets
# and pandas.core.indexes.datetimes.
# ... | apache-2.0 |
NazBen/impact-of-dependence | depimpact/conservative.py | 1 | 32098 | """Impact of Dependencies.
The main class inspect the impact of correlation on a quantity
of interest of a model output.
TODO:
- Make test functions
- Clean the code
- Add a load/save to DependenceResult class
- User np.tril to take the values of the matrices
"""
import json
import operator
import o... | mit |
RTBHOUSE/pandas-gbq | pandas_gbq/gbq.py | 1 | 49149 | import warnings
from datetime import datetime
import json
from time import sleep
import uuid
import time
import sys
import os
import numpy as np
from distutils.version import StrictVersion
from pandas import compat, DataFrame, concat
from pandas.compat import lzip, bytes_to_str
def _check_google_client_version():
... | bsd-3-clause |
Kortemme-Lab/kddg | kddg/api/schema.py | 1 | 62291 | #!/usr/bin/python2.4
# encoding: utf-8
"""
schema.py
SQLAlchemy representation
Created by Shane O'Connor 2015.
Copyright (c) 2015 Shane O'Connor. All rights reserved.
"""
import sys
import os
import inspect
import pprint
import StringIO
import gzip
import pandas
import traceback
import getpass
from sqlalchemy impor... | mit |
evenmarbles/mlpy | mlpy/stats/dbn/hmm.py | 1 | 43454 | """
Hidden Markov Models
====================
.. autosummary::
:toctree: generated/
:nosignatures:
HMM
DiscreteHMM
GaussianHMM
StudentHMM
GMMHMM
"""
from __future__ import division, print_function, absolute_import
# noinspection PyUnresolvedReferences
from six.moves import range
from abc import... | mit |
clawpack/clawpack-4.x | python/pyclaw/plotters/frametools.py | 1 | 62155 |
"""
Module frametools for plotting frames of time-dependent data.
"""
import os,sys,shutil,glob
import string,re
import time
import traceback
from pyclaw.data import Data
from pyclaw.plotters import plotpages
from matplotlib.colors import Normalize
plotter = 'matplotlib'
if plotter == 'matplotlib':
if not s... | bsd-3-clause |
MDAnalysis/mdanalysis | package/MDAnalysis/analysis/hole2/hole.py | 1 | 61262 | # -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
#
# MDAnalysis --- https://www.mdanalysis.org
# Copyright (c) 2006-2020 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
# Released under t... | gpl-2.0 |
jakobj/nest-simulator | pynest/nest/lib/hl_api_types.py | 1 | 38514 | # -*- coding: utf-8 -*-
#
# hl_api_types.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, o... | gpl-2.0 |
jseabold/statsmodels | statsmodels/genmod/bayes_mixed_glm.py | 4 | 38956 | r"""
Bayesian inference for generalized linear mixed models.
Currently only families without additional scale or shape parameters
are supported (binomial and Poisson).
Two estimation approaches are supported: Laplace approximation
('maximum a posteriori'), and variational Bayes (mean field
approximation to the poster... | bsd-3-clause |
psychopy/versions | psychopy/info.py | 1 | 31337 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# Part of the PsychoPy library
# Copyright (C) 2002-2018 Jonathan Peirce (C) 2019-2020 Open Science Tools Ltd.
# Distributed under the terms of the GNU General Public License (GPL).
"""This module has tools for fetching data about the system or the
current Python process.... | gpl-3.0 |
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