repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
adamrvfisher/TechnicalAnalysisLibrary | RMultipleTracker55DayOneUnit.py | 1 | 31417 | # -*- coding: utf-8 -*-
"""
Created on Wed Jul 11 09:04:55 2018
@author: AmatVictoriaCuramIII
"""
#Developed in Python 3.5
#R Multiple Finder; Trade Tracking
import numpy as np
import random as rand
import pandas as pd
import time as t
from DatabaseGrabber import DatabaseGrabber
from YahooGrabber import... | apache-2.0 |
chrsrds/scikit-learn | sklearn/datasets/samples_generator.py | 8 | 58675 | """
Generate samples of synthetic data sets.
"""
# Authors: B. Thirion, G. Varoquaux, A. Gramfort, V. Michel, O. Grisel,
# G. Louppe, J. Nothman
# License: BSD 3 clause
import numbers
import array
from collections.abc import Iterable
import numpy as np
from scipy import linalg
import scipy.sparse as sp
fro... | bsd-3-clause |
NSLS-II/PyXRF | pyxrf/model/load_data_from_db.py | 1 | 94973 | from __future__ import absolute_import, division, print_function, unicode_literals
import h5py
import numpy as np
import os
import json
import multiprocessing
import pandas as pd
import math
import time as ttime
import copy
from distutils.version import LooseVersion
import logging
import warnings
try:
import dat... | bsd-3-clause |
NathanYee/ThinkBayes2 | bayesianLinearRegression/thinkbayes2.py | 1 | 74401 | """This file contains code for use with "Think Stats" and
"Think Bayes", both by Allen B. Downey, available from greenteapress.com
Copyright 2014 Allen B. Downey
License: GNU GPLv3 http://www.gnu.org/licenses/gpl.html
"""
from __future__ import print_function, division
"""This file contains class definitions for:
H... | gpl-2.0 |
medialab/ipinion-rank | ipinion.py | 1 | 41557 | #!/usr/bin/env python
import code
import codecs
import contextlib
import csv
import gc
import hashlib
import json
import logging
import os
import re
import sys
import time
import urlparse
import zlib
from gexf import Gexf, GexfImport
from datetime import datetime
from optparse import OptionParser
from ConfigParser im... | mit |
majetideepak/arrow | python/pyarrow/parquet.py | 1 | 51904 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
RegulatoryGenomicsUPF/pyicoteo | pyicoteolib/parser/common.py | 1 | 30092 | """
Parser Common: The common flags and functions shared between Pyicoteo parsers
"""
"""
Pyicoteo is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later ve... | gpl-3.0 |
architecture-building-systems/CEAforArcGIS | cea/optimization/preprocessing/decentralized_buildings_cooling.py | 1 | 37243 | """
Operation for decentralized buildings
"""
import time
from math import ceil
import numpy as np
import pandas as pd
from itertools import repeat
import cea.config
import cea.inputlocator
from cea.optimization.master.emissions_model import calc_emissions_Whyr_to_tonCO2yr
import cea.technologies.boiler as boiler... | mit |
lhilt/scipy | scipy/stats/_distn_infrastructure.py | 1 | 125281 | #
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
from scipy._lib.six import string_types, exec_, PY3
from scipy._lib._util import getargspec_no_self as _getargspec
import sys
import keyword
import r... | bsd-3-clause |
bullocke/ge-cdd | python/cdd_simple.py | 1 | 39265 | #!/usr/bin/env python
# -*- coding: UTF-8 -*-
""" Simple version of the Google Earth Engine Continuous Degradation i
(CDD) algorithm for faster processing. CDD is built upon the Google
Earth Engine's Python API and storage of the Landsat data archive. CDD
utilizes a similar change detection approach to the Continuou... | mit |
Unofficial-Extend-Project-Mirror/openfoam-extend-Breeder-other-scripting-PyFoam | PyFoam/Applications/SamplePlot.py | 1 | 44067 | # ICE Revision: $Id$
"""
Application class that implements pyFoamSamplePlot.py
"""
import sys,string
from os import path
from optparse import OptionGroup
from .PyFoamApplication import PyFoamApplication
from PyFoam.RunDictionary.SampleDirectory import SampleDirectory
from PyFoam.Basics.SpreadsheetData import WrongDa... | gpl-2.0 |
cython-testbed/pandas | pandas/core/arrays/categorical.py | 1 | 87593 | # pylint: disable=E1101,W0232
import numpy as np
from warnings import warn
import textwrap
from pandas import compat
from pandas.compat import u, lzip
from pandas._libs import lib, algos as libalgos
from pandas.core.dtypes.generic import (
ABCSeries, ABCIndexClass, ABCCategoricalIndex)
from pandas.core.dtypes.mi... | bsd-3-clause |
cython-testbed/pandas | pandas/tests/util/test_testing.py | 1 | 34752 | # -*- coding: utf-8 -*-
import textwrap
import os
import pandas as pd
import pytest
import numpy as np
import sys
from pandas import Series, DataFrame
import pandas.util.testing as tm
import pandas.util._test_decorators as td
from pandas.util.testing import (assert_almost_equal, raise_with_traceback,
... | bsd-3-clause |
cdeboever3/cdpybio | tests/star/test_star.py | 1 | 35611 | from copy import deepcopy
import os
from numpy import array
from numpy import nan
import numpy as np
import pandas as pd
from pandas.util.testing import assert_frame_equal
from pandas.util.testing import assert_panel_equal
import pytest
import cdpybio as cpb
# Note: I use pos and neg in this file to refer to the plu... | mit |
dhermes/google-cloud-python | bigquery/docs/snippets.py | 2 | 111566 | # Copyright 2016 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | apache-2.0 |
plotly/python-api | packages/python/plotly/plotly/graph_objs/scatterpolargl/marker/_colorbar.py | 1 | 69895 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "scatterpolargl.marker"
_path_str = "scatterpolargl.marker.colorbar"
_valid_props = {
... | mit |
FTAsr/STS | supervisedEval/AllScores_supervised_05.py | 1 | 36167 | #!/Users/fa/anaconda/bin/python
'''
Evaluation code for the SICK dataset (SemEval 2014 Task 1)
'''
import sys
#sys.path = ['../gensim', '../models', '../utils'] + sys.path
sys.path = ['../', '../featuremodels', '../utils', '../monolingual-word-aligner'] + sys.path
# Local imports
import gensim, utils
from featuremode... | mit |
ekostat/ekostat_calculator | event_handler.py | 1 | 203019 | # -*- coding: utf-8 -*-
"""
Created on Wed Jan 31 15:05:36 2018
@author: a001985
"""
import os
import shutil
import time
import datetime
import numpy as np
import json
import codecs
import re
import pandas as pd
import pickle
# TODO: Move this!
#current_path = os.path.dirname(os.path.dirname(os.path.dirname(os... | mit |
pratapvardhan/pandas | pandas/core/indexing.py | 1 | 91578 | # pylint: disable=W0223
import textwrap
import warnings
import numpy as np
from pandas.compat import range, zip
import pandas.compat as compat
from pandas.core.dtypes.generic import ABCDataFrame, ABCPanel, ABCSeries
from pandas.core.dtypes.common import (
is_integer_dtype,
is_integer, is_float,
is_list_like... | bsd-3-clause |
dattalab/d_code | imaging/io/tifffile.py | 1 | 93987 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# tifffile.py
# Copyright (c) 2008-2012, Christoph Gohlke
# Copyright (c) 2008-2012, The Regents of the University of California
# Produced at the Laboratory for Fluorescence Dynamics
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or wit... | mit |
janusassetallocation/loman | loman/computeengine.py | 1 | 45236 | import logging
import os
import tempfile
import traceback
from collections import namedtuple, defaultdict
from concurrent.futures import ThreadPoolExecutor, FIRST_COMPLETED, wait
from datetime import datetime
from enum import Enum
import inspect
import decorator
import dill
import networkx as nx
import pandas as pd
im... | bsd-3-clause |
rabrahm/zaspe | new3.py | 1 | 54319 | import sys
#sys.path.append('/data/echelle/AUTOMOOGPUC/degradations/')
#sys.path.append('/data/echelle/AUTOMOOGPUC/rot_conv/')
import integration
import rot_conv
from astropy.io import fits as pyfits
#import matplotlib.pyplot as plt
import numpy as np
import scipy
from scipy import ndimage
from scipy import interpolat... | mit |
Nikakto/plotGUI | plotGUI.py | 1 | 97676 | # -*- coding: utf-8 -*-
"""
Created on Mon Feb 13 17:11:22 2017
@author: Paniker
"""
import sys
# need for plot rnd
import random
import pyperclip
from PyQt4 import QtGui
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
import matplotlib as mpl
import matplotlib.p... | gpl-2.0 |
great-expectations/great_expectations | great_expectations/core/expectation_configuration.py | 1 | 49533 | import json
import logging
from copy import deepcopy
from typing import Any, Dict
import jsonpatch
from great_expectations.core.evaluation_parameters import (
_deduplicate_evaluation_parameter_dependencies,
build_evaluation_parameters,
find_evaluation_parameter_dependencies,
)
from great_expectations.core... | apache-2.0 |
macsharma/FORKS | arabidopsis_python/forks_fcns.py | 1 | 49574 | # -*- coding: utf-8 -*-
"""
Created on Sat Oct 29 18:57:55 2016
@author: mayank
"""
import numpy as np
import pandas as pd
import scipy as sp
#from ggplot import *
#del chopsticks
#del diamonds
#del meat
#del movies
#del mpg
#del mtcars
#del pageviews
#del pigeons
#del salmon
import os
from sklea... | gpl-3.0 |
rsteed11/GAT | gat/core/sna/sna.py | 1 | 36487 | import tempfile
import matplotlib.pyplot as plt
import networkx as nx
import numpy as np
from networkx.algorithms import bipartite as bi
from networkx.algorithms import centrality
from itertools import product
from collections import defaultdict, namedtuple
import pandas as pd
import datetime
from gat.core.sna import ... | mit |
pylayers/pylayers | pylayers/antprop/signature.py | 1 | 119947 | #-*- coding:Utf-8 -*-
from __future__ import print_function
"""
.. currentmodule:: pylayers.antprop.signature
.. autosummary::
:members:
"""
import os
import glob
import doctest
import numpy as np
#import scipy as sp
import scipy.linalg as la
import pdb
import h5py
import copy
import time
import pickle
import net... | mit |
techtonik/numpy | numpy/lib/function_base.py | 1 | 123720 | from __future__ import division, absolute_import, print_function
__docformat__ = "restructuredtext en"
__all__ = [
'select', 'piecewise', 'trim_zeros', 'copy', 'iterable', 'percentile',
'diff', 'gradient', 'angle', 'unwrap', 'sort_complex', 'disp',
'extract', 'place', 'vectorize', 'asarray_chkfinite', 'ave... | bsd-3-clause |
thbuerg/Heidelberg_2017 | DeeProtein/DeeProtein.py | 1 | 68491 | import helpers
import customlayers
import tensorlayer as tl
import tensorflow as tf
import time, os, glob
import string
import json
import wget
import numpy as np
import re
from tensorflow.contrib.tensorboard.plugins import projector
from collections import OrderedDict
from sklearn import decomposition
np.set_printopti... | mit |
rs2/pandas | pandas/tests/plotting/test_frame.py | 1 | 134394 | """ Test cases for DataFrame.plot """
from datetime import date, datetime
import itertools
import string
import warnings
import numpy as np
from numpy.random import rand, randn
import pytest
import pandas.util._test_decorators as td
from pandas.core.dtypes.api import is_list_like
import pandas as pd
from pandas im... | bsd-3-clause |
pravsripad/jumeg | jumeg/jumeg_volmorpher.py | 2 | 54869 | #!/usr/bin/env python2
# -*- coding: utf-8 -*-
# Authors: Daniel van de Velden (d.vandevelden@yahoo.de)
#
# License: BSD (3-clause)
import os
import os.path as op
import time as time2
import mne
import numpy as np
from mne.transforms import (rotation, rotation3d, scaling,
translation, ap... | bsd-3-clause |
deapplegate/wtgpipeline | sed_plot.py | 1 | 60012 | import math, re, sys
import pylab # matplotlib
import os
if not 'sne' in os.environ:
os.environ['sne'] = '/nfs/slac/g/ki/ki04/pkelly'
#os.environ['PYTHONPATH'] = os.environ['PYTHONPATH'] +':/nfs/slac/g/ki/ki04/pkelly/lib/python2.5/site-packages/PIL/'
#def mkstellarcolorplot():
def make_thecorrections(cluster,DE... | mit |
matthew-tucker/mne-python | mne/epochs.py | 1 | 92857 | """Tools for working with epoched data"""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Daniel Strohmeier <daniel.strohmeier@tu-ilmenau.de>
# Denis Engemann <denis.engemann@gmail.com>
# Mainak Jas <mainak@neuro... | bsd-3-clause |
SIBBORK/SIBBORK | source/hdf_analysis_GUI.py | 1 | 78719 | """
Simple pyqtgraph application to investigate a SiBork driver file.
"""
import pyqtgraph as pg
import pyqtgraph.opengl as pggl
import pyqtgraph.console
from pyqtgraph.Qt import QtCore, QtGui
import numpy as np
import h5py
import dill
from math import *
import pandas as pd
import StringIO
from hdf_analysis import load... | gpl-2.0 |
vortex-ape/scikit-learn | sklearn/model_selection/tests/test_search.py | 2 | 70357 | """Test the search module"""
from sklearn.externals.six.moves import cStringIO as StringIO
from sklearn.externals.six.moves import xrange
from itertools import chain, product
import pickle
import sys
from types import GeneratorType
import re
import warnings
import numpy as np
import scipy.sparse as sp
import pytest
... | bsd-3-clause |
JeanOlivier/pyHegel | pyHegel/util.py | 1 | 39078 | # -*- coding: utf-8 -*-
########################## Copyrights and license ############################
# #
# Copyright 2011-2015 Christian Lupien <christian.lupien@usherbrooke.ca> #
# ... | gpl-3.0 |
xuewei4d/scikit-learn | sklearn/decomposition/_nmf.py | 3 | 48742 | """ Non-negative matrix factorization.
"""
# Author: Vlad Niculae
# Lars Buitinck
# Mathieu Blondel <mathieu@mblondel.org>
# Tom Dupre la Tour
# License: BSD 3 clause
import numbers
import numpy as np
import scipy.sparse as sp
import time
import warnings
from math import sqrt
from ._cdnmf_fast... | bsd-3-clause |
fspaolo/scikit-learn | sklearn/metrics/pairwise.py | 1 | 37190 | # -*- coding: utf-8 -*-
"""
The :mod:`sklearn.metrics.pairwise` submodule implements utilities to evaluate
pairwise distances or affinity of sets of samples.
This module contains both distance metrics and kernels. A brief summary is
given on the two here.
Distance metrics are a function d(a, b) such that d(a, b) < d(... | bsd-3-clause |
nextgenusfs/amptk | amptk/amptk.py | 1 | 46407 | #!/usr/bin/env python
from __future__ import (absolute_import, division,
print_function, unicode_literals)
import sys
import os
import importlib
from natsort import natsorted
from amptk import amptklib
from pkg_resources import get_distribution
__version__ = get_distribution('amptk').version
d... | bsd-2-clause |
PragyaJaiswal/Protein-Sequence-Parser | correlation_final_scaled.py | 1 | 31984 | #!/usr/bin/env python3
import numpy as np
import operator
import json
from collections import Counter
from sklearn.cluster import KMeans
from sklearn.decomposition import PCA
from matplotlib import pyplot
# Amino acid patterns: A C D E F G H I K L M N P Q R S T V W X Y
Mammali... | gpl-2.0 |
chrsrds/scikit-learn | sklearn/linear_model/tests/test_sag.py | 1 | 31758 | # Authors: Danny Sullivan <dbsullivan23@gmail.com>
# Tom Dupre la Tour <tom.dupre-la-tour@m4x.org>
#
# License: BSD 3 clause
import math
import pytest
import numpy as np
import scipy.sparse as sp
from sklearn.linear_model.sag import get_auto_step_size
from sklearn.linear_model.sag_fast import _multinomial_gr... | bsd-3-clause |
louispotok/pandas | pandas/core/frame.py | 1 | 281250 | """
DataFrame
---------
An efficient 2D container for potentially mixed-type time series or other
labeled data series.
Similar to its R counterpart, data.frame, except providing automatic data
alignment and a host of useful data manipulation methods having to do with the
labeling information
"""
from __future__ import... | bsd-3-clause |
sstoma/CellProfiler | cellprofiler/modules/measureobjectneighbors.py | 1 | 35811 | '''<b>Measure Object Neighbors</b> calculates how many neighbors each
object has and records various properties about the neighbors' relationships,
including the percentage of an object's edge pixels that touch a neighbor.
<hr>
Given an image with objects identified (e.g., nuclei or cells), this
module determines how... | gpl-2.0 |
guma44/GEOparse | src/GEOparse/GEOTypes.py | 1 | 39720 | """
Classes that represent different GEO entities
"""
import abc
import gzip
import json
import os
import re
import time
from multiprocessing import Pool
import numpy as np
from pandas import DataFrame, concat
from six import iteritems, itervalues
from . import utils
from .logger import geoparse_logger as logger
fro... | bsd-3-clause |
rs2/pandas | pandas/tests/groupby/aggregate/test_aggregate.py | 1 | 38787 | """
test .agg behavior / note that .apply is tested generally in test_groupby.py
"""
import functools
from functools import partial
import numpy as np
import pytest
from pandas.errors import PerformanceWarning
from pandas.core.dtypes.common import is_integer_dtype
import pandas as pd
from pandas import DataFrame, I... | bsd-3-clause |
rs2/pandas | pandas/core/base.py | 1 | 47584 | """
Base and utility classes for pandas objects.
"""
import builtins
import textwrap
from typing import Any, Callable, Dict, FrozenSet, Optional, Union
import numpy as np
import pandas._libs.lib as lib
from pandas.compat import PYPY
from pandas.compat.numpy import function as nv
from pandas.errors import AbstractMet... | bsd-3-clause |
yanlinqian/CS190.1X | ML_lab5_pca_student.py | 1 | 66164 |
# coding: utf-8
# 
# # **Principal Component Analysis Lab**
# #### This lab delves into exploratory analysis of neuroscience data, specifically using principal component analysis (PCA) and feature-based aggregation. We will use a dataset... | mit |
cgranade/qutip | qutip/visualization.py | 3 | 45741 | # This file is part of QuTiP: Quantum Toolbox in Python.
#
# Copyright (c) 2011 and later, Paul D. Nation and Robert J. Johansson.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
... | bsd-3-clause |
plypaul/airflow | airflow/www/views.py | 1 | 90464 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
aflaxman/scikit-learn | sklearn/gaussian_process/gaussian_process.py | 1 | 34641 | # -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# License: BSD 3 clause
from __future__ import print_function
import numpy as np
from scipy import linalg, optimize
from ..base import BaseEstimator, RegressorMixin
from ..metrics... | bsd-3-clause |
madscatt/zazzie | src/sassie/calculate/sld_mol/sld_mol.py | 2 | 45256 | '''
SASSIE: Copyright (C) 2011 Joseph E. Curtis, Ph.D., Hirsh Nanda, Ph.D.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your optio... | gpl-3.0 |
arongdari/digbeta | tour/src/ijcai15.py | 1 | 48821 | import math
import pulp
import re
import random
import numpy as np
import statistics as stat
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import axes3d
#from datetime import datetime
class PersTour:
"""Reproduce the IJCAI'15 paper"""
def __init__(self, dirname, fname, fpoi=None, writeFile=True):... | gpl-3.0 |
UMN-Hydro/GSFLOW_pre-processor | python_scripts/MODFLOW_scripts/MODFLOW_NWT_lib.py | 1 | 77239 | # -*- coding: utf-8 -*-
"""
Created on Sun Sep 17 22:34:30 2017
MODFLOW_NWT_lib
This library includes all the separate matlab functions for writing the different MODFLOW input files
@author: gcng
"""
import numpy as np
import pandas as pd # for data structures and reading in data from text file
import matplotlib.py... | gpl-3.0 |
SU-ECE-17-7/hotspotter | hscom/helpers.py | 1 | 58687 | '''
This is less of a helper function file and more of a pile of things
where I wasn't sure of where to put.
A lot of things could probably be consolidated or removed. There are many
non-independent functions which are part of HotSpotter. They should be removed
and put into their own module. The standalone functions sh... | apache-2.0 |
XueqingLin/tensorflow | tensorflow/contrib/learn/python/learn/estimators/dnn_test.py | 1 | 39011 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
wheeler-microfluidics/dmf_control_board_plugin | feedback.py | 1 | 88763 | """
Copyright 2011-2016 Ryan Fobel and Christian Fobel
This file is part of dmf_control_board.
dmf_control_board is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your optio... | bsd-3-clause |
mgaitan/scipy | scipy/stats/stats.py | 2 | 162522 | # Copyright (c) Gary Strangman. All rights reserved
#
# Disclaimer
#
# This software is provided "as-is". There are no expressed or implied
# warranties of any kind, including, but not limited to, the warranties
# of merchantability and fitness for a given application. In no event
# shall Gary Strangman be liable fo... | bsd-3-clause |
Djabbz/scikit-learn | sklearn/neighbors/base.py | 1 | 31051 | """Base and mixin classes for nearest neighbors"""
# Authors: Jake Vanderplas <vanderplas@astro.washington.edu>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Sparseness support by Lars Buitinck <L.J.Buitinck@uva.nl>
# Multi-output... | bsd-3-clause |
pratapvardhan/pandas | pandas/core/tools/datetimes.py | 1 | 30078 | from functools import partial
from datetime import datetime, timedelta, time
from collections import MutableMapping
import numpy as np
from pandas._libs import tslib
from pandas._libs.tslibs.strptime import array_strptime
from pandas._libs.tslibs import parsing, conversion
from pandas._libs.tslibs.parsing import ( #... | bsd-3-clause |
trystynb/ContFit | tb_contfit.py | 1 | 48325 | #!/usr/bin/python2.7
"""
TB_CONTFIT.PY
V1.2 (15/07/2016)
-Included cuntinous point editor
-Fixed bugs with opening new files.
Author: Trystyn Berg (trystynb@uvic.ca)
SUMMARY AND USAGE:
Stand-alone python application to fit continuum to spectrum.
Load a spectrum from fits file, and fit a cubic spline to the s... | mit |
mganeva/mantid | qt/applications/workbench/workbench/widgets/plotselector/view.py | 1 | 32051 | # Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
# This file is part of the mantid workbench.... | gpl-3.0 |
ZGainsforth/StoichiometryFitter | StoichiometryFitter.py | 1 | 33210 | #!/usr/bin/env python
# -*- coding: US-ASCII -*-
#
# generated by wxGlade 0.6.8 on Thu Mar 6 15:07:47 2014
#
__author__ = 'Zack Gainsforth'
__copyright__ = 'Copyright 2016, Zack Gainsforth'
__email__ = 'zsg@gainsforth.com'
# TODO Print out k-facs used.
# TODO Site occupation and endmember fitter. A py file for each... | epl-1.0 |
materialsproject/pymatgen | pymatgen/analysis/pourbaix_diagram.py | 1 | 42106 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module is intended to be used to compute Pourbaix diagrams
of arbitrary compositions and formation energies. If you use
this module in your work, please consider citing the following:
General formalis... | mit |
shoyer/xray | xarray/tests/test_dataset.py | 1 | 204616 | # -*- coding: utf-8 -*-
import pickle
import sys
import warnings
from collections import OrderedDict
from copy import copy, deepcopy
from io import StringIO
from textwrap import dedent
import numpy as np
import pandas as pd
import pytest
import xarray as xr
from xarray import (
ALL_DIMS, DataArray, Dataset, Index... | apache-2.0 |
NicWayand/xray | xarray/core/dataarray.py | 1 | 53975 | import contextlib
import functools
import warnings
import numpy as np
import pandas as pd
from ..plot.plot import _PlotMethods
from . import indexing
from . import groupby
from . import rolling
from . import ops
from . import utils
from .alignment import align
from .common import AbstractArray, BaseDataObject, squee... | apache-2.0 |
olologin/scikit-learn | sklearn/model_selection/_validation.py | 1 | 36451 | """
The :mod:`sklearn.model_selection._validation` module includes classes and
functions to validate the model.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD 3 clause
from __... | bsd-3-clause |
jslhs/sunpy | sunpy/map/map.py | 1 | 31438 | """
Map is a generic Map class from which all other Map classes inherit from.
"""
from __future__ import absolute_import
#pylint: disable=E1101,E1121,W0404,W0613
__authors__ = ["Keith Hughitt, Steven Christe"]
__email__ = "keith.hughitt@nasa.gov"
import os
import pyfits
import numpy as np
import matplotlib.pyplot as ... | bsd-2-clause |
smorton2/think-stats | code/thinkstats2.py | 1 | 70025 | """This file contains code for use with "Think Stats" and
"Think Bayes", both by Allen B. Downey, available from greenteapress.com
Copyright 2014 Allen B. Downey
License: GNU GPLv3 http://www.gnu.org/licenses/gpl.html
"""
from __future__ import print_function, division
"""This file contains class definitions for:
H... | gpl-3.0 |
davidovitch/freeyaw-ojf-wt-tests | ojfdb.py | 1 | 94311 | # -*- coding: utf-8 -*-
"""
Created on Wed Oct 17 17:37:00 2012
Make a database of all the test and their results
@author: dave
"""
#from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
from __future__ import absolute_import
import os
import pickle
import str... | gpl-3.0 |
lfairchild/PmagPy | dialogs/thellier_interpreter.py | 1 | 70689 | #!/usr/bin/env python
#---------------------------------------------------------------------------
# Author: Ron Shaar
# Revision notes
#
# Rev 2.1 June 4th 2015.
# Fix small zero division bug.
#
# Rev 2.0 November 2014
#
# Rev 1.0 Initial revision August 2012
#
#
#-----------------------------------------------------... | bsd-3-clause |
thomasorb/orb | orb/core.py | 1 | 127365 | #!/usr/bin/python
# *-* coding: utf-8 *-*
# Author: Thomas Martin <thomas.martin.1@ulaval.ca>
# File: core.py
## Copyright (c) 2010-2020 Thomas Martin <thomas.martin.1@ulaval.ca>
##
## This file is part of ORB
##
## ORB is free software: you can redistribute it and/or modify it
## under the terms of the GNU General P... | gpl-3.0 |
aditiiyer/CERR | CERR_core/ModelImplementationLibrary/SegmentationModels/ModelDependencies/CT_HeadAndNeck_SelfAttention/augmentation_pytorch_jj.py | 1 | 87071 | import sys, os
import numpy as np
from matplotlib import pyplot as plt
from scipy.io import loadmat
from skimage import io
#os.environ['KERAS_BACKEND'] = 'theano'
#os.environ['THEANO_FLAGS'] = 'mode=FAST_RUN, device=gpu0, floatX=float32,optimizer=fast_compile,assert_no_cpu_op=raise,#print_global_stats=True'#pycuda.i... | lgpl-2.1 |
rs2/pandas | pandas/tests/reductions/test_reductions.py | 1 | 44904 | from datetime import datetime, timedelta
import numpy as np
import pytest
import pandas as pd
from pandas import (
Categorical,
DataFrame,
DatetimeIndex,
Index,
NaT,
Period,
PeriodIndex,
RangeIndex,
Series,
Timedelta,
TimedeltaIndex,
Timestamp,
isna,
timedelta_r... | bsd-3-clause |
cloud-fan/spark | python/pyspark/pandas/groupby.py | 1 | 112084 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
amolkahat/pandas | pandas/tests/arithmetic/test_datetime64.py | 1 | 73593 | # -*- coding: utf-8 -*-
# Arithmetc tests for DataFrame/Series/Index/Array classes that should
# behave identically.
# Specifically for datetime64 and datetime64tz dtypes
import operator
from datetime import datetime, timedelta
import warnings
from itertools import product, starmap
import numpy as np
import pytest
imp... | bsd-3-clause |
jbrundle/earthquake-forecasts | EQMethods_backup_1-24-2016.py | 1 | 40751 | #!/opt/local/bin python
#import sys
#sys.path.reverse()
# Earthquake Methods library of methods and functions
#
# This code base collects the methods and functions used to make
# plots and maps of earthquake data and activity
#
##########################################################... | mit |
herilalaina/scikit-learn | sklearn/cross_validation.py | 3 | 73483 | """
The :mod:`sklearn.cross_validation` module includes utilities for cross-
validation and performance evaluation.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD 3 clause
from... | bsd-3-clause |
DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/linear_model/tests/test_logistic.py | 1 | 39612 | import numpy as np
import scipy.sparse as sp
from scipy import linalg, optimize, sparse
from sklearn.datasets import load_iris, make_classification
from sklearn.exceptions import ConvergenceWarning
from sklearn.linear_model.logistic import (
LogisticRegression,
logistic_regression_path, LogisticRegressionCV,
... | mit |
datactive/bigbang | bigbang/listserv.py | 1 | 47859 | import datetime
import email
import glob
import logging
import mailbox
import os
import re
import subprocess
import time
import warnings
from mailbox import mboxMessage
from pathlib import Path
from typing import Dict, List, Optional, Tuple, Union
from urllib.parse import urljoin, urlparse
import numpy as np
import pa... | agpl-3.0 |
openmeteo/enhydris | enhydris/tests/test_models.py | 2 | 51867 | import datetime as dt
from io import StringIO
from unittest import mock
from django.contrib.auth.models import User
from django.contrib.gis.geos import MultiPolygon, Point, Polygon
from django.db import IntegrityError
from django.db.models.signals import post_save
from django.test import TestCase, override_settings
fr... | agpl-3.0 |
dssg/wikienergy | disaggregator/build/pandas/pandas/tseries/tests/test_tslib.py | 1 | 33140 | import nose
from distutils.version import LooseVersion
import numpy as np
from pandas import tslib
import datetime
from pandas.core.api import Timestamp, Series, Timedelta
from pandas.tslib import period_asfreq, period_ordinal, get_timezone
from pandas.tseries.index import date_range
from pandas.tseries.frequencies i... | mit |
BryanCutler/spark | python/pyspark/sql/dataframe.py | 1 | 99845 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
survey-methods/samplics | tests/estimation/test_expansion.py | 1 | 59667 | import numpy as np
import pandas as pd
from samplics.estimation import TaylorEstimator
np.random.seed(12345)
yrbs = pd.read_csv("./tests/estimation/yrbs.csv")
yrbs["y"] = yrbs["qn8"].replace({2: 0})
yrbs["x"] = 0.8 * yrbs["y"] + 0.5
yrbs["domain"] = np.random.choice(["d1", "d2", "d3"], size=yrbs.shape[0], p=[0.1, ... | mit |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_New_Server_0625_2015.py | 1 | 47389 |
# coding: utf-8
# In[5]:
import sys, os
sys.path.append('../../../libs/')
sys.path.append('../libs/')
sys.path.append('../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import csv
from dateutil import parser
from datetime import timede... | gpl-2.0 |
transceptor-technology/siridb-server | itest/test_log.py | 1 | 55082 | import asyncio
import functools
import random
import time
from testing import Client
from testing import default_test_setup
from testing import gen_data
from testing import gen_points
from testing import gen_series
from testing import InsertError
from testing import PoolError
from testing import QueryError
from testing... | mit |
ejhumphrey/harmonic-cnn | hcnn/driver.py | 1 | 34382 | """Top-level routines, including:
* extract_features
* train_model
* find_best_model
* predict
* analyze
* fit_and_predict_one
* fit_and_predict_cross_validation
"""
import boltons.fileutils
import datetime
import glob
import json
import logging
import numpy as np
import os
import pandas as pd
import shutil
import sk... | isc |
anntzer/scikit-learn | sklearn/tree/_export.py | 3 | 37181 | """
This module defines export functions for decision trees.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Dawe <noel@dawe.me>
# Satrajit Gosh <satrajit.ghosh@gmail.com>
# Trevor... | bsd-3-clause |
harisbal/pandas | pandas/tests/test_multilevel.py | 1 | 109296 | # -*- coding: utf-8 -*-
# pylint: disable-msg=W0612,E1101,W0141
from warnings import catch_warnings, simplefilter
import datetime
import itertools
import pytest
import pytz
from numpy.random import randn
import numpy as np
from pandas.core.index import Index, MultiIndex
from pandas import (Panel, DataFrame, Series, n... | bsd-3-clause |
bsmurphy/PyKrige | pykrige/ok3d.py | 1 | 39755 | # coding: utf-8
"""
PyKrige
=======
Code by Benjamin S. Murphy and the PyKrige Developers
bscott.murphy@gmail.com
Summary
-------
Contains class OrdinaryKriging3D.
References
----------
.. [1] P.K. Kitanidis, Introduction to Geostatistcs: Applications in
Hydrogeology, (Cambridge University Press, 1997) 272 p.
..... | bsd-3-clause |
pyrrho314/recipesystem | trunk/gempy/tests/mosaic/rtf_mosaic.py | 1 | 36773 | #!/usr/bin/env python
# EDITED for RTF tests. nz Nov 28 2013
# Acceptance Tests
#
# This module puts together all the Aceptance Tests for the Mosaic project and it
# can be run in conjunction with the explanations in the MS Word document:
# ATPMosaic-Oct4.docx
# To run individual tests:
# UNIX shell:
#% atp_mosai... | mpl-2.0 |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_load2-new10fold_10_11_2014_server.py | 1 | 40152 |
# coding: utf-8
# In[3]:
import sys, os
sys.path.append('../../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import numpy as np
import csv
from dateutil import parser
from datetime import timedelta
from sklearn import svm
import numpy ... | gpl-2.0 |
wmvanvliet/mne-python | mne/source_estimate.py | 1 | 127603 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Matti Hämäläinen <msh@nmr.mgh.harvard.edu>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (3-clause)
import contextlib
import copy
import os.path as op
from types import Generator... | bsd-3-clause |
jonathanhogg/scopething | scope.py | 1 | 30987 | """
scope
=====
Code for talking to the BitScope series of USB digital mixed-signal scopes.
Only supports the BS000501 at the moment, but that's only because it's never
been tested on any other model.
"""
# pylama:ignore=E0611,E1101,W0201,W1203,W0631,C0103,R0902,R0912,R0913,R0914,R0915,C0415,W0601,W0102
import argpa... | bsd-2-clause |
maxwell-lv/MyQuant | index_list/__init__.py | 1 | 36779 | import pandas as pd
from io import StringIO
import click
import os
import sys
JSON_DATA = """
[
{"name": "上证指数", "symbol": "000001.XSHG"},
{"name": "A股指数", "symbol": "000002.XSHG"},
{"name": "B股指数", "symbol": "000003.XSHG"},
{"name": "工业指数", "symbol": "000004.XSHG"},
{"name": "商业指数", "symbol": "000005.XSHG"}... | gpl-3.0 |
ARudiuk/mne-python | mne/evoked.py | 1 | 60718 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (3-clause)
from copy imp... | bsd-3-clause |
e-koch/FilFinder | fil_finder/filament.py | 1 | 56431 | # Licensed under an MIT open source license - see LICENSE
import numpy as np
import astropy.units as u
import networkx as nx
import warnings
import scipy.ndimage as nd
from astropy.nddata import extract_array
import astropy.modeling as mod
from astropy.modeling.models import Gaussian1D, Const1D
import sys
if sys.vers... | mit |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/scalar/period/test_period.py | 1 | 53666 | from datetime import date, datetime, timedelta
import numpy as np
import pytest
import pytz
from pandas._libs.tslibs import iNaT, period as libperiod
from pandas._libs.tslibs.ccalendar import DAYS, MONTHS
from pandas._libs.tslibs.frequencies import INVALID_FREQ_ERR_MSG
from pandas._libs.tslibs.parsing import DatePars... | apache-2.0 |
dsm054/pandas | pandas/tests/frame/test_to_csv.py | 1 | 46580 | # -*- coding: utf-8 -*-
from __future__ import print_function
import os
import csv
import pytest
import numpy as np
from pandas.compat import (lmap, range, lrange, StringIO, u)
from pandas.io.common import _get_handle
import pandas.core.common as com
from pandas.errors import ParserError
from pandas import (DataFra... | bsd-3-clause |
bowenliu16/deepchem | deepchem/data/datasets.py | 1 | 30135 | """
Contains wrapper class for datasets.
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
import os
import numpy as np
import pandas as pd
import random
from functools import partial
from deepchem.utils.save import save_to_disk
from deepchem.utils.save im... | gpl-3.0 |
CamDavidsonPilon/lifelines | lifelines/utils/__init__.py | 1 | 69975 | # -*- coding: utf-8 -*-
from typing import Union, Any, Tuple, List, Callable, Optional, Dict
from datetime import datetime
from functools import wraps
from textwrap import dedent
from enum import Enum
import collections
import warnings
from numpy import ndarray
import numpy as np
from scipy.integrate import quad, tr... | mit |
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