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#' Create a link between two areas #' #' @param from The first area from which to create a link #' @param to The second one #' @param propertiesLink a named list containing the link properties, e.g. hurdles-cost #' or transmission-capacities for example. #' @param dataLink a matrix with five column corresponding to : t...
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#wm_opts(server = "https://webmorph.test") # frl ---- test_that("frl", { skip_on_cran() stimuli <- demo_tems("frl") sym_both <- symmetrize(stimuli) sym_shape <- symmetrize(stimuli, color = 0) sym_color <- symmetrize(stimuli, shape = 0) sym_anti <- symmetrize(stimuli, shape = -1.0, color = 0) # c(st...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/neuro_install.R \name{neuro_install} \alias{neuro_install} \alias{neuroc_install} \alias{neurocLite} \title{Neuroconductor Installer} \usage{ neuro_install( repo, release = c("stable", "current"), release_repo = latest_neuroc_release(),...
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#' Stratified random sample of packages. #' #' Logs from RStudio's CRAN Mirror http://cran-logs.rstudio.com/ #' @param cran_log Object. CRAN log. #' @param sample.pct Numeric. #' @param multi.core Logical or Numeric. \code{TRUE} uses \code{parallel::detectCores()}. \code{FALSE} uses one, single core. You can also speci...
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# * 실습 결과를 R Script file로 제출 # * R Script file 이름은 "영문본인이름_제출일날짜.R" 부여하여 제출 # * R Script file의 처음에 주석으로 본인 이름과 작성일/제출일 기록 # # 문1) # 다음은 직장인 10명의 수입과 교육받은 기간을 조사한 자료이다. 산점도와 상관계수를 구하고, # 수입과 교육기간 사이에 어떤 상관관계가 있는지 설명하시오. # # 수입 121 99 41 35 40 29 35 24 50 60 # 교육기간 19 20 16 16 18 12 14 12 16 17 income <- c( 121, 99...
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#Uncomment below lines to download data required is not downloaded #download.file("https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2Fhousehold_power_consumption.zip", "./powerconsumption.zip") #if(!file.exists("./powerconsumption")) {dir.create("./powerconsumption")} #unzip("powerconsumption.zip", exdir = "./powe...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/getAmendments.R \name{getAmendments} \alias{getAmendments} \title{Get amendments to a bill} \usage{ getAmendments( biennium, billNumber, paired = TRUE, type = c("df", "list", "xml") ) } \arguments{ \item{biennium}{Charac...
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library(sde) library(viridis) palette(viridis(8)) # ----------------------------------------------------------------- # Ornstein-Uhlenbeck process # ----------------------------------------------------------------- set.seed(1) d <- expression(0 - 20 * x) s <- expression(0.1) time.max <- 100 N <- 10^3 y <- sde.sim...
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DEFAULT_CSV_OFFSET <- 0 DEFAULT_EXCEL_OFFSET <- 4 FILE_SEP <- "/" #' Load Multiple Post Trades #' #' Load multiple post trade files (csv and excel supported) returning a single #' data.frame. #' #' @param path path containing the files to read #' @param pattern pattern for files to match #' @param add_filename shou...
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#====================================================================================== # Variable definitions, data import, preparation #====================================================================================== #rm(list=ls(all=TRUE)) graphics.off() require(rgdal) require(Rcpp) WriteLog <- TRU...
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\name{getPath} \alias{getPath} \title{getPath} \description{This function is used by the Rob_seg function to recover the best segmentation from 1:n from the C output} \usage{getPath(path, i)} \arguments{ \item{path}{the path vector of the "Rob_seg" function} \item{i}{the last position to consider in the path...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/shiny.R \name{getReactableState} \alias{getReactableState} \title{Get the state of a reactable instance} \usage{ getReactableState(outputId, name = NULL, session = NULL) } \arguments{ \item{outputId}{The Shiny output ID of the \code{reactable...
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setwd("C:/Users/naditi/Projects/MapTheGap/Community/Data/") US <- read.table("US Zipcodes.csv", sep = ",", header = TRUE, stringsAsFactor = TRUE) US[,which(colnames(US) == "world_region")] <- NULL US[,which(colnames(US) == "timezone")] <- NULL US[,which(colnames(US) == "county")] <- NULL US[,which(colnames(US) == "are...
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setwd('D:/Bork/Desktop') data = read.table('results.dat',header=T) mat = sqrt(as.matrix(data)) colnames(mat) = 1:20 T0949 = mat[1:3,] T0950 = mat[4,] T0951 = mat[c(6,5,7),] T0953s1 = mat[c(9,8,10),] T0953s2 = mat[c(11,13,12),] pdf('barplots.pdf') barplot(T0949, xlab = 'Structure', ylab = 'MSD', main = '...
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library(highfrequency) ### Name: rCov ### Title: Realized Covariance ### Aliases: rCov ### Keywords: volatility ### ** Examples # Realized Variance/Covariance for CTS aligned # at 5 minutes. data(sample_tdata); data(sample_5minprices_jumps); # Univariate: rv = rCov( rdata = sample_tdata$PRICE, align.by...
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#Merges the training and the test sets to create one data set. test_set<-read.table('./UCI HAR Dataset/test/X_test.txt') train_set<-read.table('./UCI HAR Dataset/train/X_train.txt') set<-rbind(test_set,train_set) # resulting set act_testset<-read.table('./UCI HAR Dataset/test/y_test.txt') act_trainset<-read.table('./UC...
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library(fOptions) library(dplyr) library(ggplot2) #Valuation Calculation callputs<-mutate(callputs,Value=`Open Interest`*(Bid+Ask)/2) #Total Valuation of Calls and Puts alone group_by(callputs,Type)%>% summarise(`Total Valuation`=sum(Value)) #Total Valuation of both calls and puts summarise(callputs,Total=sum(Valu...
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\name{Plots2GE} \alias{Plots2GE} \title{ Georeferencing custom R plots into Google Earth } \description{ Plots2GE: Places PNG R plots on Google Earth, as KML files. } \usage{ Plots2GE(data, center, nesting = 0, customfun, goo = "Plots2GE.kml", testrun = FALSE) } %- maybe also 'usage' for other objects documented here. ...
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#Joins varios 01 library(SparkR) source("paths.R") sparkR.session(master = "local[*]", sparkConfig = list(spark.local.dir="/mnt/datos/tempSparkR")) conexp <- sql(" SELECT MaestroContratos.origen, MaestroContratos.cptocred, MaestroContratos.cfinca, MaestroContratos.cptoserv, MaestroContratos.cderind, Maes...
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#internal #Utility functions used only within the package #Recycle the arguments as needed. #Taken from: # http://stackoverflow.com/questions/9335099/implementation-of-standard-recycling-rules recycle <- function(...){ dotList <- list(...) max.length <- max(sapply(dotList, length)) lapply(dotList, rep, length=m...
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#This script builds the dataset. library(pacman) p_load(tidyverse,lubridate) ##################################### #Read in visitation #visit_raw <- read_csv(file = "data/visitation_with_policy_day_and_month_dummies.csv") #Read in hourly visitation (I've included the total number of devices observed #in the panel ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/temp_profile.R \name{predict.tprofile} \alias{predict.tprofile} \title{Predict site-year heating and cooling load} \usage{ \method{predict}{tprofile}(x, dat) } \description{ Predict site-year heating and cooling load }
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% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/progressStart.R \name{progressStart} \alias{progressStart} \title{Starts a model step: progress bar, timing, loading inputs} \usage{ progressStart(steplist, steps, modellist = model) } \arguments{ \item{steplist}{List object for the c...
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\name{dsquared} \alias{dsquared} \title{Calculate d-squared} \description{Calculate Blair and Lacy's d-squared.} \usage{dsquared(V)} \arguments{ \item{V}{A frequency vector} } \details{This function calculates Blair and Lacy's d-squared, a measure of concentration based on squared Euclidean distances. This function f...
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#Getting all the tweets with geocoded information allTweetsDay6<-dbGetQuery(conn, "SELECT CAST(tweetuser AS varchar(1000)), date(tweetcreated), TRIM (LEADING '[' FROM split_part(tweetgeocoord, ',', 1) ) as lat, TRIM (TRAILING ']' FROM split_part(tweetgeocoord, ',', 2) ) as long, t...
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## Put comments here that give an overall description of what your ## functions do ## Write a short comment describing this function # makeCacheMatrix creates and stores a list with functions for # 1. set the the matrix # 2. get the the matrix # 3. set the inverse of the matrix # 4. get the inverse of the matrix make...
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### (a) ### # Reading file `GDM.raw.txt` into a data table named `gdm.dt`, # and storing rsID and coded allele in a separate data table (call it snp.allele.dt) library(data.table) gdm.dt <- fread("GDM.raw.txt") if(!"stringr" %in% rownames(installed.packages())) { install.packages("stringr") # functions for making...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_benchmark_fund_relationship.R \name{get_benchmark_fund_relationship} \alias{get_benchmark_fund_relationship} \title{Get relationships between funds and benchmarks get_benchmark_fund_relationship} \usage{ get_benchmark_fund_relationship( ...
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\name{getAE} \alias{getAE} \docType{data} \title{ Download MAGE-TAB files from ArrayExpress in a specified directory } \description{ \code{getAE} downloads and extracts the MAGE-TAB files from an ArrayExpress dataset. } \usage{ getAE(accession, path = getwd(), type = "full", extract = TRUE, local = FALSE, sourcedir...
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gd <- read.csv("getdata_data_ss06hid[1].csv") getwd() gd <- read.csv("getdata_data_ss06hid.csv") dim(gd) stsplit(names(gd))[123] strsplit(names(gd))[123] strsplit(gd, names) varnames <- strsplit(gd, "wgtp") varnames <- strsplit(names(gd), "wgtp") varnames[[123]] fileurl <- "https://d396qusza40orc.cloudfront.net/getdata...
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corr <- function(directory, threshold = 0) { files_list <- list.files(directory, full.names = TRUE) id <- 1:332 dat <- data.frame() cor_vec <- c() nobs <-c() x <- integer() y <- numeric() for(i in id){ dat <- read.csv(files_list[i]) x <- sum(complete.cases(dat)) nobs <- c(nobs, x) y <- c...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/stanova_lm.R \name{stanova_lm} \alias{stanova_lm} \alias{stanova_aov} \alias{stanova_glm} \title{Estimate ANOVA-type models with rstanarm} \usage{ stanova_lm(formula, data, check_contrasts = "contr.bayes", ...) stanova_aov(formula, data, che...
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## dplyr # filter() 행추출 # select() 열추출 # arrange() 정렬 # mutate() 변수추가 # summarise() 통계치산출 # group_by() 집단별로 나누기 # left_join() 데이터합치기(열) # bind_rows() 데이터합치기(행) # view() 뷰어창에서 데이터 확인 !! 주의... v가 대문자 install.packages("dplyr") library(dplyr) path <- getwd() #working directory 의 약자 지금 작업하는 위치 path setwd("csv_exam") #worki...
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library(nlmeU) ### Name: missPat ### Title: Extract pattern of missing data ### Aliases: missPat ### ** Examples dtf <- subset(armd.wide, select = c(visual12, visual24, visual52)) missPat(dtf, symbols = c("?","+"))
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library(rgdal) library(rgeos) library(sp) library(spatial) library(raster) #Make a point file with all the points within 10 k of the study site pts = readOGR(dsn='F:/Predictive_Modelling/Vector_Data', layer='Cell_Centroids') boundary = readOGR(dsn='F:/Field_data/04_Colombia_results', layer='plot_boundary') ...
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## Here are two functions that are aimed at getting the inverse of a matrix (assumed to be invertible). The aim is to check the cache ## for an existing solution, and if solution is not present, then calculate the inverse and store it in the cache. ## The function makeCacheMatrix accepts a matrix whose inverse is t...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/transforms-generics.R \name{transform_adjust_brightness} \alias{transform_adjust_brightness} \title{Adjust the brightness of an image} \usage{ transform_adjust_brightness(img, brightness_factor) } \arguments{ \item{img}{A \code{magick-image},...
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## makeCacheMatrix: This function creates a special “matrix” object that can cache its inverse. makeCacheMatrix <- function(x = matrix()) { inv <- NULL f <- function(y){ x <<- y inv <<- NULL } g <- function() {x} setInverse <- function(inverse) {inv <<- inverse} getInverse <- function() {inv} lis...
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library(uwIntroStats) ### Name: tableStat ### Title: Table of Stratified Descriptive Statistics ### Aliases: tableStat tableStat.default tableStat.do print.tableStat ### Keywords: ~kwd1 ~kwd2 ### ** Examples # Load required libraries library(survival) # Reading in a dataset mri <- read.table("http://www.emersonsta...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/helpers.R \name{tests} \alias{tests} \alias{tests.paramtest} \title{Return the parameter values that were tested by paramtest.} \usage{ tests(test, ...) \method{tests}{paramtest}(test, ...) } \arguments{ \item{test}{An object of type 'paramt...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/RcppExports.R \name{gamma_coin} \alias{gamma_coin} \title{Gamma coin flipper (Algorithm 26 in ST329)} \usage{ gamma_coin(u, k, x, y, s, t, l, v) } \arguments{ \item{u}{simulated value from random U[0,1]} \item{k}{integer value starting index...
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#' Apply a simple homogeneity test after Galbraith (2003) #' #' A simple homogeneity test for De estimates #' #' For details see Galbraith (2003). #' #' @param data \code{\linkS4class{RLum.Results}} or \link{data.frame} #' (\bold{required}): for \code{data.frame}: two columns with De #' \code{(data[,1])} and De error \...
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# Plot 6 # ------ ## PA 2: Exploratory Data Analysis ## Plot 6 ## ## Libraries needed: library(ggplot2) ## Set working directory setwd("D:\\Data Science Specialization\\Exploratory Data Analysis\\Course Project") ## Step 1: read in the data ## This first line will likely take a few seconds. Be patient! if(!exists("...
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library(datasets) alldata <- "./data/household_power_consumption.txt" data <- read.table(alldata, header=TRUE, sep=";", stringsAsFactors=FALSE, dec=".") powerconsump2daysdata <- data[data$Date %in% c("1/2/2007","2/2/2007") ,] date_time <- strptime(paste(powerconsump2daysdata$Date, powerconsump2daysdata$Time, sep=" "),...
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library(bitops) library(digest) library(RCurl) library(NLP) library(RColorBrewer) library(ROAuth) library(bitops) library(RJSONIO) library(stringr) library(tm) library(httr) library(wordcloud) library(devtools) library(twitteR) library(plyr) library(stringr) library(twitteR) api_key <- "fmC6OcWB4jqwBT7bRmVssagmP" api_s...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/period2.R \name{analyze.p2} \alias{analyze.p2} \title{Apply Period 2 Analysis} \usage{ analyze.p2(per1, per2, opt.cov) } \arguments{ \item{per1}{A dataframe containing the period 1 data.} \item{per2}{A dataframe containing the per...
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#' Glossary class #' #' This is used to add terms to a glossary #' #' @param definitions_path Where the the definitions of terms are stored. This #' is used to show the definitions when hovering over a glossary term in the #' text. #' @param glossary_path The file the glossary will be added to. This is used to #' ...
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context("anomaly") test_that("Testing the file anomaly.R", { x <- anomaly(r, b, asEFFIS = TRUE) expect_true(raster::cellStats(x, max) == 6) })
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# django demo <h6>add study 3</h6> <h6>add bootstrap</h6> <h6>sublime bootstrap autosnippet s3-***</h6> <h6>add jinja2 variables </h6>
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/api.R \name{check_connection} \alias{check_connection} \title{Check if connection to server is possible} \usage{ check_connection() } \value{ TRUE if connection active, else FALSE } \description{ Check if connection to server is possible }
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/gdcFilterSamples.R \name{gdcFilterDuplicate} \alias{gdcFilterDuplicate} \title{Filter out duplicated samples} \usage{ gdcFilterDuplicate(metadata) } \arguments{ \item{metadata}{metadata parsed from \code{\link{gdcParseMetadata}}} } \value{ A ...
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library(basilisk) # define env attributes env.name <- "dnam_si" pkgv <- c("hnswlib==0.5.1", "pandas==1.2.2", "numpy==1.20.1", "mmh3==3.0.0", "h5py==3.2.1")
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_pm_fund_info.R \name{get_pm_fund_info} \alias{get_pm_fund_info} \title{Get all pm_fund_info} \usage{ get_pm_fund_info( con = AZASRS_DATABASE_CONNECTION(), add_benchmark = FALSE, return_tibble = TRUE ) } \arguments{ \item{con}{is a d...
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## Megan Cattau ## Earth Lab, Project Forest ## Contact info: megan.cattau@gmail.com or megan.cattau@colorado.edu, 706.338.9436 ## Project: Disturbance Interactions in the Southern Rockies ## Project overview: Forest transitions (i.e., Changes in ecosystem type / forest composition and structure) as a function of distu...
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#setwd('/Users/jimblotter/Desktop/Grad_School/Data_Analysis/erisor/barcodes_file/') install.packages(compare) library(compare) before <- read.csv("before.csv", header = FALSE) after <- read.csv("after.csv", header = FALSE) before after for(i in before[1,]){ if(i == after[]){ if i %in% after{ print("oops") ...
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library(tidyverse) library(rvest) library(parallel) library(ggthemes) # retrieve page content - takes either a URL string or a vector of strings which constitute a url (will be collapsed to one string using "/") get_content <- function(url) { if (is.vector(url)) { url <- str_c(url, collapse = "/") } #conten...
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data processing script for tracking.R
#Changing directory getwd() setwd("D:\\Karen's\\PhD\\R program") getwd() ##Rename Data t1<- trackdata2 ## GrossDistance (GD) GD <- aggregate( V ~ A , data = t1 , sum , na.rm = TRUE ) ## Computing the NetDistance (ND) ## Split the data dfs <- split(t1,t1$A) ## calculation NDtemp1 <- sapply( dfs , function(x) dist( x...
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pollutantmean.R
## polluttant function calculates the mean of the poluutant selected from ## specdata directory monitors selected (id) ## the function assumes directory argument is located in the R working directory pollutantmean <- function(directory, pollutant, id = 1:332) { path <- paste(getwd(), directory, sep = "/") f...
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rlba <- function(n,b,A,vs,s,t0,st0=0,truncdrifts=TRUE){ n.with.extras=ceiling(n*(1+3*prod(pnorm(-vs)))) drifts=matrix(rnorm(mean=vs,sd=s,n=n.with.extras*length(vs)),ncol=length(vs),byrow=TRUE) if (truncdrifts) { repeat { drifts=rbind(drifts,matrix(rnorm(mean=vs,sd=s,n=n.with.extras*length(vs)),ncol=length(vs),b...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/load.R \name{liveArrayTimes} \alias{liveArrayTimes} \title{Assign live times to arrays} \usage{ liveArrayTimes(arrays, deployments, spatial) } \arguments{ \item{arrays}{The array list} \item{deployments}{the deployments list} \item{spatial}...
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library(ragapi) library(ragrofims) context("Test for clean and get metadata from project lead") test_that("Test get_projlead_metadata for testq0 - API ver. 233 - no combos", { out <- get_projlead_metadata(studyId = 3,format = "data.frame", serverURL = "https://research.cip.cgiar.o...
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## Script for a principal response curve without statistics ## Requirements for datafile: ## - populations (type) coded as follows: 0 = T0rb (reference), 1 = T2rb, 2 = T0ina, 3 = T2ina, 4 = T2cur ## Script by Natalie Dallmann, Institute for environmental research, RWTH ## Version 3 (24.02.2021) ## Load required ...
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susie_slim = function (res) list(alpha = res$alpha,niter = res$niter,V = res$V,sigma2 = res$sigma2) n_in_CS_x = function (x, coverage = 0.9) sum(cumsum(sort(x,decreasing = TRUE)) < coverage) + 1 in_CS_x = function (x, coverage = 0.9) { n = n_in_CS_x(x,coverage) o = order(x,decreasing = TRUE) result = rep(0,le...
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dim(midwest) str(midwest) #1 midwest$ratio = midwest$popasian/midwest$poptotal x = mean(midwest$ratio) midwest$grade = ifelse(midwest$ratio >= x, "large", "small") table(midwest$grade) qplot(midwest$grade) #2 library(dplyr) midwest_new = midwest %>% arrange(desc(midwest$ratio)) %>% select(county, ratio) %>% hea...
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# Plotting Assignment 1 for Exploratory Data Analysis - # This script generates the second graphic in the assignment - global active power as a function of time. # If appropriate data file does not exist in working directory, download and unzip. if(!file.exists("household_power_consumption.txt")){ download.fi...
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#- Make the retranslocation coefficient make_leaf_p_retranslocation_coefficient_bootstrap <- function(){ df <- read.csv("download/FACE_P0020_RA_leafP-Eter_20130201-20151115_L1.csv") ### setting up the date df$Date <- paste0("1-", as.character(df$Campaign)) df$Date <- as.Date(df$Date, "%d-%b-%y") ...
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# Automatically generated by openapi-generator (https://openapi-generator.tech) # Please update as you see appropriate context("Test BiosampleApi") api.instance <- BiosampleApi$new() test_that("BiosampleByAccessionBiosampleSamplesAccessionGet", { # tests for BiosampleByAccessionBiosampleSamplesAccessionGet # bas...
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library("data.table") ##Play with standard files act <- read.table("UCI HAR Dataset/activity_labels.txt")[,2] features <- read.table("UCI HAR Dataset/features.txt")[,2] ourfeatures <- grepl("mean|std" , features) ##Play with Test files xtest <- read.table("./UCI HAR Dataset/test/X_test.txt") ytest <- read.ta...
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#' krikinton: rJava Wrapper of Sudachi and Kintoki #' @docType package #' @name krikinton #' @import rJava #' @import dplyr #' @import purrr #' @importFrom jsonlite toJSON #' @importFrom pkgload is_dev_package #' @importFrom stringi stri_enc_toutf8 #' @importFrom tibble tibble as_tibble #' @importFrom tidyr separate #'...
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shinyUI( fluidPage( theme = shinytheme("yeti"), titlePanel("Погода в российских городах-миллионниках"), tags$br(), fluidRow(column(4, offset = 1, selectInput("city", NULL, choices = cities$city, selectize = TRUE, width = "100%"))), fluidRow( column(7, offset = 1, highchartOutp...
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#----------------------- # Benjamin Risk # 25 February 2013 # Edits to David Matteson's PITdCovICA code. #----------------------- #--------------------------------------------------- # Benjamin Risk # 12 March 2013 # modified stats::density.default to return the distribution and the density; # note that only the Gau...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/R_functions.R \name{norm.samps} \alias{norm.samps} \title{Generate a matrix of samples from a normal distribution.} \usage{ norm.samps(mu = 0, sigma = 1, n = 25, nsamps = 10000) } \arguments{ \item{mu}{The expectation of the normal distributi...
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# This script contains functions used to load pension plan data either from Reason's database or # from an excel file. # Author: Andrew Abbott # Date: 12/11/2018 # Color Scheme # All images should use web safe colors — this gives us a range of orange and blue # colors that fit with Reason’s branding, as well as reds a...
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#' --- #' title: "MM Parent SNPs" #' author: Kirk Amundson #' date: 2020_1007 #' output: html_notebook #' --- #' #' Aim: Define parent-specific SNP loci and inducer/non-inducer specific alleles #' at these loci for low-pass SNP analysis of MM dihaploid cohorts. #' #' Low quality sites were filtered out in the precedi...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/update_fgeo_source.R \name{source_file} \alias{source_file} \title{Update vector to schedule package installation in correct order.} \usage{ source_file(file, dir = "../fgeo.install") } \arguments{ \item{file}{Path to a file in data-raw/.} \...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fpemreporting.R \name{get_proportions} \alias{get_proportions} \title{Get proportions} \usage{ get_proportions(posterior_samples, first_year, transformer) } \arguments{ \item{posterior_samples}{\emph{\sQuote{Array}} The samples array from \co...
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# ------------------------------------------ # Read args # ------------------------------------------ args = commandArgs(trailingOnly=T) if(length(args) < 2) { message("Invalid number of passed arguments.") } umi.path <- args[1] species <- args[2] thresholds <- args[3] n <- args[4] k <- args[5] plotting <- args[6]...
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Matrix Factorization.R
set.seed(1987) n <- 100 k <- 8 Sigma <- 64 * matrix(c(1, .75, .5, .75, 1, .5, .5, .5, 1), 3, 3) m <- MASS::mvrnorm(n, rep(0, 3), Sigma) m <- m[order(rowMeans(m), decreasing = TRUE),] y <- m %x% matrix(rep(1, k), nrow = 1) + matrix(rnorm(matrix(n*k*3)), n, k*3) colnames(y) <- c(paste(rep("Math",k), 1:k, sep="_"), ...
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library(astroFns) ### Name: ut2lst ### Title: Universal time to local sidereal time or hour angle ### Aliases: ut2lst ut2ha ### Keywords: chron ### ** Examples # LST at UT1 midnight on the first of every month for Green Bank, WV, USA midLST <- ut2lst(yr = 2012, mo = 1:12, dy = 1, hr = 0, mi = 0, se = 0, ...
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### look at data from data sharing network ### mjp library(ggplot2) dat <- read.csv("data/dsn_pull/rf-1990-2015.csv", header = TRUE, as.is = TRUE) sites <- read.csv("data//dsn_pull/rf_sites.csv", header = TRUE, as.is = TRUE ) dat$date <- as.Date(dat$Activity.Start.Date, format = "%m/%d/%Y") dat$Result.Value <- as....
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# calculate statistics on trees, the total branch length, number of genes and whether they have a character matrix library(ape) treePath <- "~/data/IES_data/msas/phyldog/results/" load("~/data/IES_data/rdb/charMats") clusters <- dir(path = treePath, pattern = "*.ReconciledTree$") clusters <- gsub(pattern = ".Reconciled...
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# Read txt file into R powercons <- read.csv("household_power_consumption.txt", header = TRUE, sep =";", na.strings = "?") # Convert date and time columns into date and time format powercons$datetime <- strptime(paste(powercons$Date, powercons$Time), format = "%d/%m/%Y %H:%M:%S") # Subset for two first days of Februa...
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#' @title Create YouTube actor network #' #' @description Creates a YouTube actor network from comment threads on YouTube videos. Users who have made comments to #' a video (top-level comments) and users who have replied to those comments are actor nodes. The comments are #' represented as directed edges betwee...
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institutiile n - au nici blana , nici coada , n - au nici bataturi in talpa si nu fac nici diaree . sint doar niste cladiri mai fatoase si niste conventii intre noi , biete fiinte trecatoare . si atunci , vrind - nevrind , iti vine sa te intrebi , oare de ce a sarit Parchetul General ( de pe linga Curtea Suprema de J...
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# Examine how household energy usage varies over a 2-day period in February, 2007. # To obtein data from source houseData <- read.table(file="./Project1/household_power_consumption.txt", header = T, sep=";", na.strings = "?") # Transform data type from Date variable houseData$Date <- a...
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source( file = "global.R", local = T, encoding = "UTF-8" ) shinyUI( dashboardPagePlus( skin = "red", title = i18n$t("新 型 コ ロ ナ ウ イ ル ス 感 染 速 報"), header = dashboardHeaderPlus( title = paste0("🦠 ", i18n$t("新 型 コ ロ ナ ウ イ ル ス 感 染 速 報")), titleWidth = 600, enable_rightsidebar = F ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/infer_contrasts.R \name{infer_contrast_names} \alias{infer_contrast_names} \title{Infer contrast names} \usage{ infer_contrast_names(object) } \arguments{ \item{object}{eset} } \value{ character vector } \description{ Infer contrast names } \...
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# # Test setup # simpleInciMat <- function() { ## Here's a simple graph for testing ## a b ## |\ /| ## | \___c___/ | ## | | | ## \ | / ## \____d____/ ## ## mat <- matrix(c(0, 0, 1, 1, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0), ...
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setClass("EMSc",representation( EMSpretty="matrix", result_EMS= "matrix", namesdesc="matrix", result_EMSlF="matrix", final_EMS="matrix" )) setMethod( f="[", signature=c("EMSc","character","missing","...
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library(MEMSS) ### Name: Oats ### Title: Split-plot Experiment on Varieties of Oats ### Aliases: Oats ### Keywords: datasets ### ** Examples str(Oats)
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\encoding{UTF-8} \name{simumix} \alias{simumix-class} \alias{names,simumix-method} \alias{print,simumix-method} \alias{show,simumix-method} \title{forensim class for DNA mixtures} \description{The S4 \code{simumix} class is used to store DNA mixtures of individual genotypes along with informations about the individua...
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householdpower <- read.table("household_power_consumption.txt",skip=1,sep=";", na.strings = "?", colClasses = c('character', 'character', 'numeric', 'numeric', 'numeric', 'numeric', 'numeric', 'numeric', 'numeric')) names(householdpower) <- c("Date","Time","Global_active_power","Global_reactive_power","Voltage","Global...
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sample_intercept.R
# # sample_intercept.R # # Created by Zhifei Yan # Last update 2017-4-22 # #' Sample intercept effects #' #' Produce a Gibbs sample of intercept effects of all states #' #' @param y a matrix of current update of Weibull log scale parameters #' @param alpha a matrix of current update of subject random effects #' @par...
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# devtools::install_github("rpremraj/mailR") # wymaga instalacji Java library(dplyr) library(knitr) library(mailR) library(rmarkdown) # library(readr) # library(tidyr) # Parametry poczty from <- "user@domena.dom" subject <- "Temat" smtp <- list(host.name = "Adres servera SMTP", port = 465, u...
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rp <- processx::run("R", "--vanilla") rp <- processx::process$new("R", "--vanilla") rp$is_alive() servr::httd(daemon = TRUE, browser = FALSE, port = 4321) R.utils::withTimeout( { s <- rvest::html_session("http://127.0.0.1:4321") }, t...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fars_functions.R \name{make_filename} \alias{make_filename} \title{Function "make_filename" - creates a file name in a specified format} \usage{ make_filename(year) } \arguments{ \item{year}{A string or an integer} } \value{ This function ret...
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app.R
library(shiny) source("functions.R") source("cpi maker.R") source("Lab_force.R") ui <- shinyUI(fluidPage( tabsetPanel( tabPanel("CPI without", sidebarLayout( sidebarPanel( width = 3, selectizeInput("choice_Ex","Sectors to exclude:", choices = colnames...
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# Time Series #dataset AirPassengers class(AirPassengers) JohnsonJohnson nhtemp Nile sunspots ds = list(AirPassengers,JohnsonJohnson,nhtemp,Nile,sunspots) sapply(ds, class) # Sales TS Data sales = c(18, 33, 41, 7, 34, 35, 24, 25, 24, 21, 25, 20, 22, 31, 40, 29, 25, 21, 22, 54, 31, 25, 26, 35) tsales = ts(...
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# Bioinformatics Class 5 # Plots x <- rnorm(1000,0) summary(x) # let's see this data a graph boxplot(x) hist(x) # Section 1 from lab sheet baby <- read.table("bggn213_05_rstats/weight_chart.txt", header = T) plot(baby, type = "b", pch = 19, cex = 0.5, lwd = 0.5, ylim=c(2,10), xlab="Age (months)", ylab="Weight (kg)...