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#################################### # Build parameters: var_cost # #################################### # You must run 2_regress files before compiling parameter! input_reg <- paste0(wd, "output/analysis/regress") # Import regression file paths <- readRDS(file.path(input_reg, 'var_cost_from_reg.rds')) isid('paths', c...
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% Generated by roxygen2 (4.1.0): do not edit by hand % Please edit documentation in R/toDD.R \name{toDD} \alias{toDD} \title{6-hourly to daily data aggregator} \usage{ toDD(NDarray, dimNamesRef, dailyAggr) } \arguments{ \item{NDarray}{A N-dimensional array, as returned by \sQuote{readDataSlice}} \item{dimNamesRefRef}{...
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#Initialize gambles in a dataframe gambles <- data.frame(safe_1 = 100, safe_2 = 80, risky_1 = 190, risky_2 = 5, p_1 = seq(0.1,1,0.1)) gambles$p_2 = 1-gambles$p_1 # exp_val <- function(alpha,gamma){ exp_val_2 <- function(alpha, gamma, gambles){ gambles$wp_1 <- exp(-...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_leverage_centrality.R \name{get_leverage_centrality} \alias{get_leverage_centrality} \title{Get leverage centrality} \usage{ get_leverage_centrality(graph) } \arguments{ \item{graph}{A graph object of class \code{dgr_graph}.} } \value{ A ...
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#speed based filter by Ingo Schiffner 2017 #calculates speed between consecutive localizations and filters out segments exceeding spd_lim #assumes x and y coordinates are given in a projected format in meters and time(t) given as ATLASTimeStamp(ms) #returns a data.frame containing filtered x,y and time(t) SpdFilt <...
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install.packages('rsconnect') library(rsconnect) rsconnect::setAccountInfo(name='yikai-zhao', token='12389A9B53A08CC115D3FD54D4F123F3', secret='') rsconnect::deployApp('/Users/zhaoyikai/Comparative_pol_measurement_project/Shiny_app')
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# Do quality control on a cell and gene level # Cell-level quality control CellQC <- function(q_array, m_array, id, qc_m_array, original_q_array) { geneset_size <- rowSums(q_array != 0) gene_qc <- geneset_size > 1500 gene_m_array <- m_array[gene_qc == TRUE,] # these need to be separated so there can be a separat...
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n<-10000 count<-0 for (i in rnorm(n)){ if (-1<i & i<1){ count<-count+1 } } answer<-count/n answer x<- rnorm(5) for (i in x){ print (i)}
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% Generated by roxygen2 (4.0.2): do not edit by hand \name{sortData} \alias{sortData} \title{Sort results data} \usage{ sortData(data, sortMethod = "BEA", nUNITS, DATES.COLUMN.FIRST, DATES.COLUMN.LAST, TEST.RESULT.LEVELS) } \description{ Function that sorts the data according to a criterion. Not to be called directly...
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# #Hecho con gusto por Veronica F. Garcia Arteaga (UAEH) # # LABORATORIO - Desafio 2 # #cargar datos # # # # # cargar libreria ggplot2 library(ggplot2) # grafica de puntos con colores LEYvd ggplot(data = gender, mapping = aes(x=STATE, y=LEYvd, color= STATE)) + geom_po...
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############################################################ ### Compare.ROC.R ### ############################################################ setwd("/project/bioinformatics/Xiao_lab/s418336/projects/geneck.ena") suppressMessages(library(argparse)) source("code/analysis/compare....
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#' Distance between two points on a spheroid #' #' Calculate the distance between two points on the surface of a spheroid #' using Vincenty's formula. This function can be used when GIS libraries #' for calculating distance are not available. #' #' @param p1 coordinates of the first point in decimal degrees (LON, LAT...
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### Format NLDAS output into GLM-friendly format pacman::p_load(tidyverse, lubridate) options(scipen=999) LakeName = 'Prairie Lake' source <- paste('C:/Users/KJF/Desktop/R/MacrosystemsEDDIE/Teleconnections/dataPrep/NLDAS/',LakeName, '/',sep='') glm_dir <- paste('C:/Users/KJF/Desktop/R/MacrosystemsEDDIE/Teleconnections...
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# # # # # # # # # # # # # # # # # # # # # # Purpose: import processed data and filter out people who are excluded from the main analysis # outputs: # - inclusion/exclusions flowchart data (up to matching step) # # # # # # # # # # # # # # # # # # # # # # Preliminaries ---- ## Import libraries ---- library('tidyverse...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_quarter_office_expenses_house_member.R \name{get_quarter_office_expenses_house_member} \alias{get_quarter_office_expenses_house_member} \title{Get Quarterly Office Expenses by a Specific House Member} \usage{ get_quarter_office_expenses_h...
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# These are lower-level functions that support "the health" of the local # datadir that is used to store the data required to drive a # LocalArchs4Repository #' Initialize a local datadir to act as an ARCHS4 data datadir #' #' @details #' A local datadir needs to be created and initialized (wth a `meta.yaml` #' file),...
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library(LongMemoryTS) library(MTS) library(FKF) library(orthopolynom) library(MASS) library(longmemo) library(beyondWhittle) library(forecast) library(nlme) library(msos) theta1<-vector() theta1[1]<-1 theta1[2]<-0.2 for(j in 3:1000) { theta1[j]=theta1[j-1]*(j-2+0.2)/(j-1) } theta2<-vector()...
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# test correctness of gRNA matrix require(dplyr) # set directories gasp_offsite <- .get_config_path("LOCAL_GASPERINI_2019_DATA_DIR") intermediate_data_dir <- paste0(gasp_offsite, "intermediate/") raw_data_dir <- paste0(gasp_offsite, "raw/") # load gRNA barcodes, count matrix, and indicator matrix gRNA_barcodes_in_use...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/pca_time.R \name{pca_time} \alias{pca_time} \title{Producing PCA greatest hits} \usage{ pca_time(x) } \arguments{ \item{x}{a matrix or dataframe object} } \description{ Produce a complete table of PCA loadings, and a biplot of the first two p...
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rm(list=ls()) pacman::p_load(INLA, ggplot2, data.table, lattice, arm, dplyr, TMB, ar.matrix) set.seed(124) mesh2DF <- function(x){ M <- length(proj$x) DT <- data.table(x=rep(proj$x, M), y=rep(proj$y, each=M), obs=c(inla.mesh.project(proj, field=x))) DT } n <- 1000 loc <- matrix(runif...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fars_functions.R \name{make_filename} \alias{make_filename} \title{Make a filename in the format used for FARS data files} \usage{ make_filename(year) } \arguments{ \item{year}{A year in the numeric format} } \value{ This function returns a c...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/parse-others.R \name{parse_d20200423_SANCHEZ-CANETE} \alias{parse_d20200423_SANCHEZ-CANETE} \title{Parse a custom file from d20200423_SANCHEZ-CANETE} \usage{ `parse_d20200423_SANCHEZ-CANETE`(path) } \arguments{ \item{path}{Data directory path...
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\name{glm.diag} \alias{glm.diag} \title{ Generalized Linear Model Diagnostics } \description{ Calculates jackknife deviance residuals, standardized deviance residuals, standardized Pearson residuals, approximate Cook statistic, leverage and estimated dispersion. } \usage{ glm.diag(glmfit) } \arguments{ \item{glmfit}{ ...
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options(shiny.maxRequestSize=30*1024^2) # Import libraries that are needed for processing in this module. library(shiny) library(dplyr) library(data.table) library(R.utils) set.seed(42) normalize = function(m, norm = c("l1", "l2", "none")) { stopifnot(inherits(m, "matrix") || inherits(m, "sparseMatrix")) norm ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/docco.R \docType{data} \name{birthrate} \alias{birthrate} \title{Vital statistics by country} \format{A data frame with 97 rows and 4 variables: \describe{ \item{birth}{Birth rate (units unspecified)} \item{death}{Death rate} \item{infa...
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% Generated by roxygen2 (4.0.2): do not edit by hand \name{format_date} \alias{format_date} \title{Format date variables in a data frame} \usage{ format_date(df_2format, pattern = "date", orders = "dmy", year_max = NULL, as_date = FALSE, excel = FALSE) } \arguments{ \item{df_2format}{A data frame} \item{pattern}{Vec...
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library(ISLR) names(Smarket) dim(Smarket) summary(Smarket) cor(Smarket) cor(Smarket[, -9]) attach(Smarket) plot(Volume) glm.fits = glm(Direction ~ Lag1 + Lag2 + Lag3 + Lag4 + Lag5 + Volume, family = binomial, data = Smarket) summary(glm.fits) coef(glm.fits) summary(glm.fits)$coef[, -4] glm.probs = predict(glm.fits, t...
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##Identify file location and download url<-"https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2Fhousehold_power_consumption.zip" download.file(url, "HPC.zip") ##Unzip the file unzip("HPC.zip") ##Load the data from the unzipped file hpc<-read.table("household_power_consumption.txt", header=TRUE, sep=";") ##Convert ...
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# This script trains a Random Forest model based on the data, # saves a sample submission, and plots the relative importance # of the variables in making predictions # I made some changes to add more models including library(ggplot2) library("e1071") set.seed(1) train <- read.csv("../input/train.csv", s...
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# required packages require("plyr") # package to compute counts in aggregates require("nnet") # multinomial models package # constants inputTestData <- "test.tsv" inputTrainingData <- "train.tsv" outputTestData <- "test_output.csv" outputTestDataKaggle <- "test_output_kaggle.csv" outputTestDataWeka <- "test_output_we...
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# model_base.R - Runs and diagnostics for the base case SS3 model # SWO/OM/model_base.R # Copyright Iago MOSQUEIRA (WMR), 2020 # Author: Iago MOSQUEIRA (WMR) <iago.mosqueira@wur.nl> # Modified: Daniela Rosa (IPMA) # Distributed under the terms of the EUPL-1.2 library(ss3om) library(ss3diags) library(icesTAF) # SET...
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#' Title #' #' @param data.ld #' @param distribution #' @param formula #' @param group.var #' @param xlab #' @param ylab #' @param conf.level #' @param xlim #' @param ylim #' @param relationship #' @param power #' @param dump #' @param mle.intervals #' @param cex #' @param grids #' @param slope.axis #' ...
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download.file("ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE56nnn/GSE56977/suppl/GSE56977_rates_gene.tx.txt.gz", "tx_rates.txt.gz") dat <- read_tsv("tx_rates.txt.gz", skip = 1, col_names = F) col_ids <- c( "gene", "quantile" ) other_col_ids <- paste("rate at", seq(0, 180, by = 15)) new_col_ids <- c(...
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rm(list=ls()) set.seed(1) library( data.table) N_PROTO <- 30 date <- as.Date("2019-03-01") + 1:N_PROTO * 7 site <- LETTERS[1:6] trap_id <- 1:4 dt <- data.table(expand.grid(date=date,site=site,trap_id=trap_id),key=c("date","site")) trend_pest <- cumsum(rnorm(N_PROTO)) trend_pred <- cumsum(rnorm(N_PROTO)) trend_para <...
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Sys.setlocale("LC_COLLATE", "C") ## What CRAN does; affects sort order set.seed(999) ## To ensure that tests that involve randomness are reproducible options(warn=1) # grab the crunch package's test framework source(system.file("crunch-test.R", package="crunch"))
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# clear variables and close windows rm(list = ls(all = TRUE)) graphics.off() # load the data x1 = read.table("FTSElevel(03.01.00-30.10.06).txt") x2 = read.table("BAYERlevel(03.01.00-30.10.06).txt") x3 = read.table("SIEMENSlevel(03.01.00-30.10.06).txt") x4 = read.table("VWlevel(03.01.00-30.10.06).txt") # calculating ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/RFCDE.R \name{print.RFCDE} \alias{print.RFCDE} \title{Print method for RFCDE objects} \usage{ \method{print}{RFCDE}(x, ...) } \arguments{ \item{x}{A RFCDE object.} \item{...}{Other arguments to print} } \description{ Print method for RFCDE o...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/hill_rarefaction.R \name{hill_rarefaction} \alias{hill_rarefaction} \alias{gghill_rarefaction} \title{Generating rarefaction curves using Hill numbers} \usage{ hill_rarefaction(metabarlist, nboot = 10, nsteps = 10) gghill_rarefaction(hill_ra...
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test_that("function returns kable objects", { expect_true("kableExtra" %in% class(mst(tab = mtcars[1:10, ], type = "html"))) expect_true("knitr_kable" %in% class(mst(tab = mtcars[1:10, ], lsd = TRUE))) expect_true("knitr_kable" %in% class(mst(tab = mtcars[1:10, ], ...
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x<-c(1,9,2,8,3,9,4,5,7,6) #均值 mean(x) #中位数 median(x) #方差 var(x) #标准差 sd(x) summary(x)
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########################################################## ###################### CODE SECTION ####################### ########################################################## template.type <- 1 ########################################################## #AF CODE roundpval<-function(pv){ rpv<-formatC(p...
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#' Track bearing to location/s #' #' Calculate geodesic bearing to a location or locations based on longitude, #' latitude (from) input vectors and longitude, latitude (to) input vectors. The #' unit of bearing is degrees. The *to* values may be a single value or #' individual to each *from* location. #' #' No missing ...
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#' Set of function to zonal statistic #' @param x image of type Image o Image Collection #' #' @param y region of type Feacture o FeatureCollection #' #' @param by a limit of pass #' #' median #' @import rgee # Functions for extract the mean of pixels of a rasterdata # ee.Reducer.count() ee_count <- function(x, y, by ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/text.R \name{read.digraph} \alias{read.digraph} \alias{parse.digraph} \alias{deparse.digraph} \alias{write.digraph} \title{Text Representations of Models} \usage{ read.digraph(file, labels = NULL) parse.digraph(lines, labels = NULL) deparse...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/07_ques_multiA.R \name{ques_invalidOptions} \alias{ques_invalidOptions} \title{增加辅助无效功能} \usage{ ques_invalidOptions(data) } \arguments{ \item{data}{数据} } \value{ 返回值 } \description{ 增加辅助无效功能 } \examples{ ques_invalidOptions(); }
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################################################## # # QMB 6358: Software Tools for Business Analytics # # OLS Regression Demo # Regression with Data from Spreadsheet # # Lealand Morin, Ph.D. # Assistant Professor # Department of Economics # College of Business Administration # University of Central Florida # # October...
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# 데이터 불러오기 raw_welfare <- read.spss(file = 'Koweps_hpc10_2015_beta1.sav', to.data.frame = T, reencode='utf-8') # 복사본 만들기 Welfare <- raw_welfare # 데이터 검토하기 head(Welfare) tail(Welfare) View(Welfare) dim(Welfare) str(Welfare) summary(Welfare) # 변수명 바꾸기 Welfare <- rename(Welfare, sex = ...
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library("vcr") if (basename(getwd()) == "AlpacaforR") { vcr::vcr_log_file("tests/testthat/vcr.log") invisible(vcr::vcr_configure(dir = "tests/testthat/vcr", log = TRUE, log_opts = list(file = "tests/testthat/vcr.log"), write_disk_path = "tests/testthat/vcr")) } else { vcr::vcr_log_file("vcr/vcr.log") invisible(...
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# script for cleaning the "raw" table of the population data from ISTAT rm(list = ls()) setwd("C:/Users/jnlpu/Documents/Studium/Geographie/5. Semester/FOSSGIS/Abschlussprojekt") # load table TabelleUnbereinigt <- read.csv(file = "Censimento_2011_Indicatori_famiglie_per_Comuni_nella_regione_SICILIA.csv", ...
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## loading the datasets library although the package will automaticlly ## loads when R starts library(datasets) data(package = "datasets") # lists the datasets in a package str(sleep) # shows the structure of an object head(sleep) ## return some of the rows inside sleep datasets help(sleep) ## access help abou...
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df <- read.csv("RentData.csv") #df[1:5,] #mean(df$Rent.money) #mean(df$Area) #median(df$Rent.money) #median(df$Area) #there is no mode in R #table(df$Room.layout) #table(df$Structure) x <- df$Rent.money var(x) #there is no varp/sample variance in R.only var/unbiased sample variance varp <-function(x){var(x)*(length(x)-...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/emuR-convert_txtCollection.R \name{convert_txtCollection} \alias{convert_txtCollection} \title{Converts a collection of audio files and plain text transcriptions into an emuDB} \usage{ convert_txtCollection( dbName, sourceDir, targetDir...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/agedotoliths.R \name{agedotoliths} \alias{agedotoliths} \title{Summary of NORPAC Otoliths by Year} \usage{ agedotoliths(agedata) } \arguments{ \item{agedata}{A data frame of NORPAC ages, often called atsea.ages.} } \value{ A data frame of pro...
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library(shiny) library(ggplot2) library(plotly) library(shinythemes) # Downloading and Cleaning Data #Data 1 = Global globalData<- read.csv("global.csv",header = FALSE,sep = ",",skip = 3,na.strings = "***") cnames <-readLines("global.csv",2) cnames<-strsplit(cnames,",",fixed = TRUE) names(globalData) <- cnames[[2]] d...
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FacetMuiPlotresultBar.R
# \item{data}{输入数据框,第一列为样本编号,第二列为分组,注意分组标签必须设定为group,第三列以后就是测定或者收集的指标了} # # \item{num}{代表您想要进行统计的列,这里可以输入多个列,只需要指定列号即可:例如:num = c(4:6)} # # \item{sig_show}{代表差异展示方式;sig_show ="abc"是使用字母表示;sig_show ="line"是使用连线和星号表示;如果是NA,那么就不显示显著性结果} # # \item{result}{代表显著性差异分析结果,是一个数据框,每一列是显著性标记字母,MuiKwWlx} # \item{ncol}{代表分面展示每一行放几张图...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/s3-generics.R, R/s3-sparsebnData.R, % R/s3-sparsebnFit.R, R/s3-sparsebnPath.R \name{num.samples} \alias{num.samples} \alias{num.samples.sparsebnData} \alias{num.samples.sparsebnFit} \alias{num.samples.sparsebnPath} \title{num.samples} \usag...
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source(here::here('R','make_ROMS_files_2.R')) # source('C:/Users/joseph.caracappa/Documents/GitHub/neus-atlantis/R/make_ROMS_files_new_levels.R') dir.names = 1981:1983 # dir.names = 2010:2014 # ellapsed.t = list() for(yr in 1:length(dir.names)){ # for(yr in 1:length(dir.names)){ if(!dir.names[yr] %in% dir('D:/Out...
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dfest_2 step.R
library(readr) library(tidyverse) library(ggplot2) library(plotly) library(RColorBrewer) library(lubridate) library(rworldmap) library(scales) setwd("/Users/Berlin/Desktop/datafest2018_data_and_documentation/data") conn1 <- read_csv("conn_posix.csv") View(conn1) # Tiles by weekday and hour conn1$weekday <- wday(co...
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library(psych) int <- function(x){ qnorm((rank(x,na.last="keep")-0.5)/sum(!is.na(x))) } setwd("D:/FangCloudV2/Zheng lab/Zheng lab共享资料/刘成林/ACS/ACS_code/explain/scfa_mol") ### all group explain meta<-read.delim("scfa_mol_ratio.txt", row.names = 1, sep = '\t', stringsAsFactors = FALSE, check.names = FALSE) meta<-as.d...
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Anova_video_problems.R
##One Factor ANOVA setwd("C:/Users/paart/Documents/PGP_BABI/R_Programming/datasets") library(plyr) library(ggplot2) library(lattice) library(MASS) golf_data <- read.csv('Golfball.csv',header = T) attach(golf_data) golf_data model <- aov(Distance~Design, data = golf_data) summary(model) print(summary(mode...
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\name{cov.wml} \alias{cov.wml} %- Also NEED an `\alias' for EACH other topic documented here. \title{Weighted Covariance Matrices (Maximum Likelihood)} \description{ Returns a list containing estimates of the weighted covariance matrix and the mean of the data, and optionally of the (weighted) correlatio...
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\alias{gtkEntrySetIconFromPixbuf} \name{gtkEntrySetIconFromPixbuf} \title{gtkEntrySetIconFromPixbuf} \description{Sets the icon shown in the specified position using a pixbuf.} \usage{gtkEntrySetIconFromPixbuf(object, icon.pos, pixbuf = NULL)} \arguments{ \item{\verb{object}}{a \code{\link{GtkEntry}}} \item{\verb{icon....
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"geary" <- function (x, na.rm = FALSE) { if (is.matrix(x)) apply(x, 2, geary, na.rm = na.rm) else if (is.vector(x)) { if (na.rm) x <- x[!is.na(x)] n <- length(x) rho <- sqrt(sum((x-mean(x))^2)/n); tau <- sum(abs(x-mean(x)))/n; tau/rho } else if (is.data.frame(x)) sappl...
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\name{get.basis} \alias{get.basis} \title{Get Basis} \description{ Retrieve the basis from a solved lpSolve linear program model object. } \usage{ get.basis(lprec, nonbasic = FALSE) } \arguments{ \item{lprec}{an lpSolve linear program model object.} \item{nonbasic}{a logical value. If \code{TRUE}, the nonbasic ...
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##################################### # merge soil moisture and temp data # ##################################### load("Data/WTC_soilMoistTemp_Chamber_DailySummary.RData") # restructure names(soilChmSmry)[4] <- "probe" SoilChMlt <- melt(soilChmSmry, id = c("Date", "Chamber", "temp", "probe")) SoilCh <- cast(So...
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data=read.csv('C:/ML/Assignment 3/a3barebones/susysubset.csv') mydata<- data[sample(1:nrow(data),2700,replace = FALSE),] # Split Data set sub <- sample(nrow(mydata),floor(nrow(mydata) * 0.75)) # Spliting Training and Test Data in ratio 3:1 training <- mydata[sub, ] testing <- mydata[-sub, ] # X train and Y train...
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rm(list=ls()) setwd("C:/Users/BATMAN/Desktop/1st project working copy") getwd() #------------------------------ library(corrplot) library(DMwR) library(e1071) library(caret) library(class) library(C50) #------------------------------ # Load train data train_df = read.csv("C:/Users/BATMAN/Desktop/1st project working co...
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\name{wine} \alias{wine} \docType{data} \title{ wine dataset} \description{ Chemical analysis of wines grown in the same region in Italy but derived from 3 different cultivars. } \usage{data(wine)} \format{ A data.frame with 178 rows on 14 variables (including 1 classification variable). } \details{ The dataset include...
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library(magick) fig <- image_graph(width = 1920, height = 1080, res = 96) # incomplete stats; will need updating lw.stats <- c(21.8, 8.8, 20, 1.5, 4.3, 2.7, 3.4, 0.9, 3, 3.8, 2.3, 1.5, 0.6, 1.9, 2.5) lw.shooting <- c(43.9, 35.8, 81.1, 50.8) dw.stats <- c(25.7, 9.2, 20.3, 2.6, 7.7, ...
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#' lit_docker() #' #' Primary selenium browser launcher #' @param browser chrome or firefox #' @param port port number #' @param headless MUST BE =TRUE FOR USING DOCKER #' @export lit_docker <-function(port=4445,browser="chrome",headless=TRUE){ if(headless==FALSE){ print("NOTE: WHEN USING DOCKER YOU ARE REQUIRED...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/render.R \name{r2d3} \alias{r2d3} \title{D3 visualization} \usage{ r2d3( data, script, css = "auto", dependencies = NULL, options = NULL, d3_version = c("6", "5", "4", "3"), container = "svg", elementId = NULL, width = NULL,...
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install.packages("rafalib") library(rafalib) install.packages("swirl") library(swirl) swirl()
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#' @include DBI.R NULL #' DBIObject methods. #' #' Pool object wrappers around DBIObject methods. See #' \code{\link[DBI]{dbDataType}}, \code{\link[DBI]{dbGetInfo}} #' and \code{\link[DBI]{dbIsValid}} for the original #' documentation. #' #' @name DBI-object NULL #' @param dbObj,obj,... See \code{\link[DBI]{dbDataTyp...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/python.R \name{py_eval} \alias{py_eval} \title{Evaluate a Python Expression} \usage{ py_eval(code, convert = TRUE) } \arguments{ \item{code}{A single Python expression.} \item{convert}{Boolean; automatically convert Python objects to R?} } \...
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verbose_counter <- function(n, i=0, ticks=10){ function() { i <<- i + 1 if (i %% ticks == 0) message(cat(i, ' / ', n, '\n')) } } verbose_sum_counter <- function(n, i=0){ function(add) { i <<- i + add message(cat(i, ' / ', n, '\n')) } } fast_dummy_factor <- function(x) { ## if , still return a ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/export.R \name{exportData} \alias{exportData} \alias{exportData,Binalysis-method} \alias{exportData,MetaboProfile-method} \alias{exportData,AnalysisData-method} \alias{exportData,Analysis-method} \alias{exportData,Assignment-method} \alias{ex...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/trackr_timepoint.R \name{trackr_timepoint} \alias{trackr_timepoint} \title{trackr_timepoint} \usage{ trackr_timepoint( dataframe, trackr_dir = NULL, timepoint_message = NULL, log_data = TRUE, suppress_success = FALSE ) } \arguments{...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/healthdata_download.R \name{download_healthdata_dailyrevision} \alias{download_healthdata_dailyrevision} \title{Download daily revision data at a specific issue date} \usage{ download_healthdata_dailyrevision(issue_date, healthdata_dailyrevis...
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# *********************************************************************************************** # Function : gpb.plot.importance # Objective : 計算された特徴の重要度を棒グラフとしてプロット # Created by: Owner # Created on: 2021/03/28 # URL : https://www.rdocumentation.org/packages/gpboost/versions/0.5.0/topics/gpb.plot.importance #...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rad.R \name{gradient} \alias{gradient} \title{Get gradient from scalar AD type} \usage{ gradient(y) } \arguments{ \item{x}{An ADtype or AD_matrix type (overloaded also for numeric and matrix types)} } \value{ The gradient of the (scalar) AD t...
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PB T Cell Proportion.R
# Get mean num of PB T cells and mean proportion # Remove junk cells and take only baseline PBMCs data_harmony_run_label_remove = data_harmony_run_label[,data_harmony_run_label$`Sample Type` == 'PBMC'] data_harmony_run_label_remove = data_harmony_run_label_remove[,!(Idents(data_harmony_run_label_remove) %in% c('Remove...
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############################################################################ ####################### functions/import.data.R ############################ # # Funções para importação dos dados. A definição de quais variáveis são # categóricas ou numéricas é feita através de arquivos externos contendo os # nomes das va...
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fun_grep <- function(x, z){ # HINT: Use it as in 'apply' object-data # 'x' is a numeric matrix # 'y' is a vector of terms to be counted e_vector <- rep(NA, length(z)) for (i in 1:length(z)){ term <- z[i] n_term <- length(which(x==term)) e_vector[i] <- n_term } ans <- as.numeric(e_vector) names(ans) <- z ans...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/klmer.R \name{klmer} \alias{klmer} \title{function to fit mixed effects model to k functions at a set distance} \usage{ klmer(formula, k, data, weights, na.action = "na.omit", ...) } \arguments{ \item{formula}{A one-sided formula describing t...
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setwd('F:\\Library\\Analytics Path\\02-R\\02-R DataSets\\Sentiment Analysis and Navie Baye') sms_raw<-read.csv('sms_spam.csv') head(sms_raw) View(sms_raw) sms_raw$type<-as.factor(sms_raw$type) str(sms_raw) library(tm) library(NLP) sms_corpus<-Corpus(VectorSource(sms_raw$text)) clean_corpus<-tm_map(...
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% Generated by roxygen2 (4.1.0): do not edit by hand % Please edit documentation in R/selectScenes.R \name{selectScenes} \alias{selectScenes} \title{Select scenes from directory} \usage{ selectScenes(x, targ, padding = NULL, verbose = TRUE) } \arguments{ \item{x}{The object whose extent will be checked. It can be a ras...
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\name{optParams} \alias{optParams} \title{ Optimize model parameters } \description{ This function is designed to optimize the tuning parameters to a particular data mining model by building many models. Note that it may be extremely slow, but should give good estimates for the optimal tuning parameters (by trying man...
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\name{RToCausataNames} \alias{RToCausataNames} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Converts R-friendly causata column names to the corresponding Causata system name } \description{ Converts R-friendly causata column names to the corresponding Causata system name } \usage{ RToCausataN...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/SMOTEWrapper.R \name{makeSMOTEWrapper} \alias{makeSMOTEWrapper} \title{Fuse learner with SMOTE oversampling for imbalancy correction in binary classification.} \usage{ makeSMOTEWrapper(learner, sw.rate = 1, sw.nn = 5L, sw.standardize = TRUE, ...
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#### Read TSV #### #' Read AIRR tabular data #' #' \code{read_tabular} reads a tab-delimited (TSV) file containing tabular AIRR records. #' #' @param file input file path. #' @param base starting index for positional fields in the input file. #' If \code{"1"}, then these fiel...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ReconstructedCountSet.R \docType{data} \name{ReconstructedCountSet} \alias{ReconstructedCountSet} \title{ReconstructedCountSet class} \format{An object of class \code{R6ClassGenerator} of length 24.} \usage{ ReconstructedCountSet } \value{ An...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fishSim_dev.R \name{quickin} \alias{quickin} \title{Quick lookup of CKMR-relevant relationships} \usage{ quickin(inds, max_gen = 2) } \arguments{ \item{inds}{an 'indiv' matrix, as from 'mort()', with some individuals marked as 'captured'} \i...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/validationsimple.R \name{valitable} \alias{valitable} \title{validation} \usage{ valitable(cx2, oridensetime, oritemplate, EarlyDateIsCommission = T, totalp, nofchange, colmWith = 2) } \arguments{ \item{cx2}{validation chart, dataframe with...
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\name{print.outlierTest} \alias{print.outlierTest} \alias{summary.outlierTest} \alias{print.summary.outlierTest} \title{Print an outlierTest object} \description{ Print an outlierTest object. } \usage{ \method{print}{outlierTest}(x, \ldots) } \arguments{ \item{x}{outlierTest object} \item{\ldots}{further arguments...
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# tagHeaders: This element will add names in each element of a vector or will add row and columns names of a matrix with variable or factor names setMethod("tagHeaders", signature = "VirtualRSet", definition = function(object) { ny <- NULL nx <- NULL nk <- NULL ne <- NULL modelType <- object...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ap_textplot.R \name{ap_textplot} \alias{ap_textplot} \title{Display text information in a graphics plot.} \usage{ ap_textplot(object, halign = "center", valign = "center", cex, cmar = 1.5, ...) } \description{ This function displays text outp...
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#' Map elections data #' #' @param data An \code{sf} object with elections data returned by #' \code{\link{join_to_spatial}}. #' @param congress The number of the Congress. If \code{NULL}, it will be #' guessed from the data. #' @param projection If not provided, then the best state plane projection will #' be gu...
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.is_CRAN_check <- function() { !interactive() && ("CheckExEnv" %in% search()) } .is_character <- function(x, na.ok = FALSE, zchar = FALSE) { is.character(x) && (na.ok || all(!is.na(x))) && (zchar || all(nzchar(x))) } .is_scalar_character <- function(x, na.ok = FALSE, zchar = FALSE) ...