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#con este hacemos todos los heatmas lindos library(readr) library(writexl) library(RColorBrewer) library(pheatmap) #dataset <- read_delim("/Volumes/Externo/Google Drive/Bioinformática/PFI/Tesina/Tesis Final/Resultados Finales/Consolidación/Tablas/FinalMergeLimpia_comparativa_ratones2.csv", ";", escape_double = FAL...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/wrap_add_waypoints.R \name{add_waypoints} \alias{add_waypoints} \title{Add or create waypoints to a trajectory} \usage{ add_waypoints(trajectory, n_waypoints = 100, resolution = sum(trajectory$milestone_network$length)/n_waypoints) } \argum...
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## combined analysis of Yosemite, YosDos, and YosDosReplication library(Hmisc) library(dplyr) source("et-admin/et-admin.R") source("etAnalyze/R/etAnalyze.R") subj_excl <- readRDS("subj_excl.rds") df_exclusions <- readRDS("df_exclusions.rds") df.pretarget.length <- readRDS("df.pretarget.length.rds") get.all.data <- ...
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# Read the file powerdata<-read.table("household_power_consumption.txt",header = TRUE, sep= ";", na.strings = "?") #Convert Date powerdata$Date <- as.Date(powerdata$Date, "%d/%m/%Y") #Select the data in the date range powerdata2 <- subset(powerdata,Date >= as.Date("2007-2-1") & Date <= as.Date("2007-2-2")) # Combine...
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two_class_sim <- function(n, intercept, linearVars, noiseVars, corrVars, minoritySize) { sigma <- matrix(c(2, 1.3, 1.3, 2), 2, 2) tmpData <- data.frame(MASS::mvrnorm(n = n, c(0, 0), sigma)) names(tmpData) <- paste("TwoFactor", 1:2, sep = "") tmpData <- cbind(tmpData, matrix(rnor...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/install-packages.R \name{install_packages} \alias{install_packages} \title{Install Packages from Repositories or Local Files, with Caching} \usage{ install_packages(pkgs, lib, repos = getOption("repos"), contriburl = contrib.url(repos, type...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data-misc.R \docType{data} \name{starwars} \alias{starwars} \title{Star Wars Episode 1-7} \format{ list of igraph objects } \source{ Data downloaded from https://github.com/evelinag/StarWars-social-network } \usage{ starwars } \description{ S...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/taxonomy.R \name{taxonomy} \alias{taxonomy} \alias{taxonomy_dada2} \alias{taxonomy_sintax} \alias{taxonomy_idtaxa} \title{Assign taxonomy to nucleotide sequences} \usage{ taxonomy(seq, reference, method, min_confidence = 50, multithread = FAL...
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source("asd-predictors.R") library(knitr) library(kableExtra) # Random Forest Model Results --------------------------------------------- rDmrResult <- runFunctions(rDmr, p = 0.8, pos = "Rett") dDmrResult <- runFunctions(dDmr, p = 0.8, pos = "Dup15q") aDmrResult <- runFunctions(aDmr, p = 0.8, pos = "ASD") pDmrResult <...
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Class 2 - In Class Project.R
########################################################## ######## Class 2 - In class Assignment ################### ########################################################## #Load Libraries you will need library(car) #graph data library(ppcor) #part corr #Set working directory (you need to change this) setwd('/Use...
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library(magic) ### Name: latin ### Title: Random latin squares ### Aliases: latin incidence is.incidence is.incidence.improper unincidence ### inc_to_inc another_latin another_incidence rlatin ### Keywords: array ### ** Examples rlatin(5) rlatin(n=2, size=4, burnin=10) # An example that allows one to optimize a...
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# Example with two inequality constraints and one upper bound # # min 100 (x2 - x1^2)^2 + (1 - x1)^2 # s.t. x1 x2 >= 1 # x1 + x2^2 >= 0 # x1 <= 0.5 # # The standard start point (-2, 1) usually converges to the standard # minimum at (0.5, 2.0), with final objective = 306.5. # Sometimes the solver c...
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day1 = read.csv("/Users/Abhishek/Downloads/01.csv", header = FALSE, stringsAsFactors=FALSE) colnames(day1) <- c("start_time", "end_time" ,"some1", "s_ip", "d_ip", "s_port", "d_port", "protocol", "flag", "some2", "some3", "flows", "size", "some4", "some5", "some6", "some7", "some8", "some9") sapply(day1,class) day2 = r...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/CustomFieldService.R \name{dfp_createCustomFieldOptions} \alias{dfp_createCustomFieldOptions} \title{CustomFieldService} \usage{ dfp_createCustomFieldOptions(request_data, as_df = TRUE, verbose = FALSE) } \arguments{ \item{request_data}{a \...
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\name{kmerFractions} \alias{kmerFractions} \title{Over Represented kmers(5)} \description{ Sometimes short read data can contain biased or artefactual repetitive DNA sequence - sometimes also called low complexity. You can spot such repetitive atrefacts by screening for over-represented kmers (k=5). } \details{ The...
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m <- leaflet() m <- addTiles(m) m <- addMarkers(m, lng= c(-97.7243, -97.7037, -97.6949, -97.733, -97.6958, -97.7585, -97.6949, -97.662, ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sis_csmc_tp.R \name{sis_csmc_tp} \alias{sis_csmc_tp} \title{controlled SMC sampler for SIS model with population-level observations} \usage{ sis_csmc_tp(y, model_config, particle_config) } \arguments{ \item{y}{a vector of length (T+1)} \item...
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# Conditioned Latin Hypercube sampling # Checking how the clhs R function handles existing sample data # What does 'include' do # Checking outputs with coobs map to detemine whether new samples go to areas of low environmental coverage # created: 15.3.2019 setwd("Z:/Dropbox/2019/rmuddles/clhs_addtion") #...
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#Function to model concentration of a solute at L and time t based on a pulse input. #Should maybe output a vector of concentrations at different times. pulse3d <- function(pulse_conc, pulse_time, max_val = 0.1, time_limits = c(0, 100), L_limi...
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library(nullabor) ### Name: reg_dist ### Title: Distance based on the regression parameters ### Aliases: reg_dist ### ** Examples with(mtcars, reg_dist(data.frame(wt, mpg), data.frame(sample(wt), mpg)))
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/bestbeforemaxdd.R \name{bestbeforemaxdd} \alias{bestbeforemaxdd} \title{Function to calculate the difference before meet the first max drawdown} \usage{ bestbeforemaxdd(x, threshold, long = TRUE) } \arguments{ \item{x}{data series, should be ...
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setwd("/binf-isilon/alab/projects/ECT2_TC/hyperTRIBE") library(RNAeditR) ################################### for modelling dat_shoots <- read.table("./pipeline/output/baseCounts_shoots_hyperTRIBE.txt",header=F) dat_roots <- read.table("./pipeline/output/baseCounts_roots_hyperTRIBE.txt",header=F) dim(dat_shoots) dim(da...
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\name{agg_g2} \alias{agg_g2} \title{Internal anRpackage objects} \description{Internal anRpackage objects.} \details{These are not to be called by the user.} \keyword{internal}
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#' @title Empirical Bayes Poisson Mean with Mixture of Gamma as Prior (still in development) #' @description Uses Empirical Bayes to fit the model \deqn{x_j | \lambda_j ~ Poi(s_j \lambda_j)} with \deqn{lambda_j ~ g()} #' with Mixture of Gamma: \deqn{g() = sum_k pi_k gamma(shape = a_k, rate = b_k)} #' @import mixsqp ...
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## Put comments here that give an overall description of what your ## functions do ## This function will take a matrix, and return a list, which will contain: ## A function to set the matrix value ## A function to get the matrix values ## A function to set the inverse of the matrix ## A function to get the inverse of ...
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# age wise social of suicide ageSocial <- function(Dataset) { social <- vector() # Null Vector Dataset$Type_code <- as.character(Dataset$Type_code) Dataset$Type <- as.character(Dataset$Type) for(i in 1:236583) { if(Dataset$Type_code[i] == 'Social_Status') { social<-c(social,Dataset$Type[i]) } ...
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File NP_Confident Class Comparison Map.r By Daniel B. Carr Copyright 2010, 2011, 2012, 2013 Due The pdf file. Prototype script Labels on left rather the right Color variants: gray states white borders Ref...
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### This script is for viewing and acquiring basic information about individual layers of Landsat, MODIS, and STARFM data library(raster) landsat<- brick('./landsat.tif') modis<- brick('./mod_.tif') data<- brick('./starfm_East_fusion.tif') ## starfm data ## To find the fraction of data available, first set pixel...
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studyTypes_data = tryCatch({ res <- read.csv(system.file("apps/brapi/data/studyTypes.csv", package = "brapiTS"), stringsAsFactors = FALSE) }, error = function(e) { NULL } ) studyTypes_list = function(page = 0, pageSize = 100){ if(is.null(studyTypes_data)) return(NULL) # paging here after fi...
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setwd("~/Cathy/Coursera R Programming/Exploratory Data Analysis") ## read in the dataset poweruse <- read.table("household_power_consumption.txt", sep=";", header = TRUE, colClasses = c("character","character", "numeric","numeric","numeric", ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_genes.R \name{get_genes} \alias{get_genes} \title{Retrieve genes from biomaRt and return the intersecting genes} \usage{ get_genes(snps = NULL, dist = 1e+06, attempts = 5, annot = NULL) } \arguments{ \item{snps}{A list of SNPs with chr, p...
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#Please write a function called containsAnyOfTheseKeys that accepts two arguments: 1) a list variable and 2) a vector variable. #Your function should return a Boolean (logical) value that indicates whether the list contains any key in the specified vector. #Hint: one way to do this is with the intersect function. ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils.R \name{run_test_applications} \alias{run_test_applications} \title{run_test_applications} \usage{ run_test_applications() } \description{ Run test all the examples }
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library(shiny) library(caret) library(rpart) library(lattice) library(ggplot2) library(e1071) data(iris) inTrain <- createDataPartition(y=iris$Species, p=0.7,list=FALSE) training <- iris[inTrain,] testing <- iris[-inTrain,] modFit <- train(Species ~ ., data=training, method="rpart") shinyServer( function(input,o...
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#а - мат ожидание x #b - среднеквадратическое отклонение x #c - мат ожидание e #d - среднеквадратическое отклонение е #n - кол-во чисел Function.NC <- function(a, b, c, d, n) { set.seed(30) x <- rnorm(n , mean = a, sd = b) e <- rnorm(n, c, d) y <- 100 - 6*x + e layout(matrix(c(1,2,2,1,2,2,4,3,3),n...
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################################################### # clear memory ################################################### rm(list = ls()) #============================================================ # set working directory #============================================================ RPROJ <- list(PROJHOME = normalizePa...
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require(lattice) make.Stereo <- function(Z, Groups, Screen1=list(z = 20, x = -70, y = 3), Screen2=list(z = 20, x = -70, y = 0), Main="Stereo", asp="Equal", Xlab="X", Ylab="Y",Zlab="Z", pch=16) { Z <- data.frame(Z) dimnames(Z) <- list(1:dim(Z)[1], c("Z1", "Z2", "Z3")) if (asp == "Equal") { X.range <- c(mi...
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setwd("C:/Users/Maria Jose Figueroa/Desktop") power_consumption<-read.table("./ExData_Plotting1/household_power_consumption.txt", skip=1,sep=";") names(power_consumption)<- c("Date","Time","Global_active_power","Global_reactive_power","Voltage","Global_intensity","Sub_metering_1","Sub_metering_2","Sub_metering_3") sub...
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#' Regions #' #' Get the list of regions available. #' #' @import rvest #' @import polite #' #' @examples regions <- get_regions() #' #' @export get_regions <- function() { session <- bow(BASE_URL, force = TRUE, user_agent = get_user_agent()) result <- scrape(session) %>% html_node(".cList") %>% html_n...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ZZ_package_description.R \docType{package} \name{twn} \alias{twn} \title{Een package voor de TWN-lijst} \description{ De bedoeling van 'twn' is om de TWN-lijst beschikbaar te maken in R en om er makkelijk mee te kunnen werken. De package bied...
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library(acepack) library(testthat) library(jsonlite) #here's a comment #testing for john and jay #learn committ and push
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library(ggplot2) library(tidyverse) Canadian_province <- c("AB", "BC", "MB", "NB", "NL", "NS", "NT","NU", "ON","PE", "QC","SK","YT") Hospitals_per_capita <- c(0.00007461243237, 0.0002895378824, 0.0001549674677, 0.00007927598015, 0.0001844600125, 0.00019909153, 0.0001550868486, 0.00007612860659, 0.0002529953655, 0....
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tidyDiscreteDiscreteMI.R \name{calculateDiscreteDiscreteMI_Entropy} \alias{calculateDiscreteDiscreteMI_Entropy} \title{calculate mutual information between a discrete value (X) and a discrete value (Y) using estimates of entropy} \usage{ calc...
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library(sjmisc) ### Name: merge_imputations ### Title: Merges multiple imputed data frames into a single data frame ### Aliases: merge_imputations ### ** Examples library(mice) imp <- mice(nhanes) # return data frame with imputed variables merge_imputations(nhanes, imp) # append imputed variables to original data...
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library(ggplot2) # Labels used in the POPI dataset popi_body_label <- 0 popi_air_label <- 1 popi_lung_label <- 2 # Callback invoked when the StartEvent happens, sets up our new data. # Functions ending in _jn are for use with Jupyter notebooks, as the display # behaviour is a bit different. # Note that we could use ...
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\name{elsc} \Rdversion{1.1} \alias{elsc} \title{ Explicit Likelihood of Subset Covariation (ELSC) function } \description{ Calculates a score based on rigorous statistics of correlation/covariation in a perturbation-based algorithm. It measures how many possible subsets of size n would have the composition fou...
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library(keras) #Import dataset mnist for training and testing mnist <- dataset_mnist() #2 lists pf 2. First list first and second part contains training and label and second for test str(mnist) #Seperate them to variable trainx <- mnist$train$x trainy <- mnist$train$y testx <- mnist$test$x testy <- mnist$test$y ta...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/superbData.R \name{superbData} \alias{superbData} \title{Obtain summary statistics with correct error bars.} \usage{ superbData( data, BSFactors = NULL, WSFactors = NULL, WSDesign = "fullfactorial", factorOrder = NULL, variables, ...
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# DATA SETUP charity = read.csv("E:/STAT 897/Group Project/charity.csv") charity.t = charity charity.t$avhv = log(charity.t$avhv) charity.t$agif = log(charity.t$agif) charity.t$inca = log(charity.t$inca) charity.t$incm = log(charity.t$incm) charity.t$lgif = log(charity.t$lgif) charity.t$rgif = log(cha...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{baltimore_map} \alias{baltimore_map} \title{Shape files for the neighborhoods of Baltimore} \format{A data frame with 4732 rows and 6 variables: \describe{ \item{OBJECTID}{identifier for each region} \item{long}{ge...
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cna <- function(x, ordering = NULL, strict = FALSE, con = 1, cov = 1, notcols = NULL, maxstep = 5, suff.only = FALSE, what="mac") { if (inherits(x, "truthTab")) {tt <- x} else {tt <- truthTab(x)} if ((! is.null(notcols)) && notcols == "all") { colnames(tt)<-chartr("qwertzuiopasdfghjkl...
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library(docopulae) ### Name: nint_space ### Title: Space ### Aliases: nint_space ### ** Examples s = nint_space(nint_gridDim(seq(1, 3, 0.9)), nint_scatDim(seq(2, 5, 0.8)), nint_intvDim(-Inf, Inf), nint_funcDim(function(x) nint_intvDim(0, x[1])), list(nint_...
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library(tidyverse) library(rvest) library(xml2) today <- format(Sys.time(), "%a %b %d %X %Y") day <- unlist(strsplit(today, " "))[1] day <- recode(day, Mon = "mandag", Tue = "tirsdag", Wed = "onsdag", Thur = "torsdag", Fri = "fredag", Sat = "lordag", Sun = "so...
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#' update_grants_db #' #' @description A utils function #' @importFrom magrittr %>% #' @return The return value, if any, from executing the utility. #' #' @noRd update_grants_db <- function() { .fetch_grants_table() %>% .filter_grants() %>% .format_grants() } .fetch_grants_table <- function() { sheets_...
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library(SimInf) ### Name: plot,SimInf_model-method ### Title: Display the outcome from a simulated trajectory ### Aliases: plot,SimInf_model-method ### ** Examples ## Not run: ##D ## Create an 'SIR' model with 100 nodes and initialise ##D ## it with 990 susceptible individuals and 10 infected ##D ## individuals in...
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##### # Internal pacakage functions for URL handling and data.frame formatting ##### #' Base URL for wunderground API #' #' @return base wunderground URL #' base_url <- function() { return("http://api.wunderground.com/api") } #' Build wunderground request URL #' #' @param key wunderground API key #' @param request_...
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#This will be the R portion of the model TMB #Staring off with individual level because I dont know how to carry lists into TMB source("modeltesting/creatingfunctiondf.R") #This is what would be needed to run in compile("scripts/fullmodelTMB2.cpp") dyn.load(dynlib("scripts/fullmodelTMB")) set.seed(123) #SM = list of ma...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/wilcox_test.R \name{wilcox_test} \alias{wilcox_test} \title{Wilcoxon Rank Sum and Signed Rank Tests} \usage{ wilcox_test(var1, var2, round = TRUE, ...) } \arguments{ \item{var1}{a vector to correlate with var2} \item{var2}{a vector to correl...
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# jackknife the best fit model. drop one year of data and re-fit best-fit model # source(paste0(main,'/00_BestModelInfo.R')) MainFile = "/Users/cdvestfals/Desktop/Hake_Analysis_for_GitHub" setwd(paste0(MainFile,'/04_Model.Testing/02_jackknife')) library(MuMIn) ######### need to set parms here if I in parms list ###...
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getwd() setwd("C:/Users/qxs/Desktop") ch<-read.table("145ch.chr1-10.outlier_genes.anno",sep="_") ch nrow(ch) ch[,2] length(ch[,2]) Uch=unique(ch[,2]) length(unique(ch[,2])) write.table(unique(ch[,2]), "145ch.chr1-10.outlier_genes.anno.unique", quote=F,row.names=F,col.names=F) pk<-read.table("1...
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example-select.r
library(bigrquery) library(Rook) library(tools) library(brew) library(rjson) billing_project <- "237471208995" sql <- " SELECT repo, repolinkDistinctQuestions AS question, repolinkAnswers AS answers FROM repos_linked_to_from_SO " dat <- query_exec("metacommunities", "github_explore", sql, billing=billing_p...
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#' Tidy Summary Statistics #' #' This function outputs a tidy data frame of summary statistics, utilizing the base summary functions #' `mean`, `median`, `min`, `max`, `quantile`, `sd`. This function selects only columns that `is.numeric = TRUE`. #' This function ignores missing values `na.rm = TRUE`. #' #' @param inp...
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# Christian Merten, Josua Kugler x <- c(1.3, .5, 42, -8e-5) x[1:4] <- x[4:1] x[x < 1] <- -2 sum(x^2) q <- 1:100 q[q %%2 == 0] <- 0
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03_facebook.R
# Facebook install.packages("Rfacebook") library(Rfacebook) # a traves de token temporal (dar de alta a cuales servicios puede acceder) token <- "EAACEdEose0cBAB5NouC14dtF13Dv93oWG3RX3eEyZCHslrPGnB5Ly9ZA6LzZB07req3gaU0nZCnsqNIR2xKrA14NpfOaZBUz6kdcbTlcy0byyseMZCR1BiDMFuZCvKMMjnXM4wXZC417tYki8Xl8JroPVQvv1qgljFo1KZBJmtL...
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#Generate numbers which follow a normal distribution noraml_distribution_numbers <- rnorm(1000) # default mean and standard deviation os 0 and 1 respectively mean(noraml_distribution_numbers) sd(noraml_distribution_numbers)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/read_dimension_values.R \name{read_dimension_values} \alias{read_dimension_values} \title{Get the values of the dimensions associated with a variable in a netCDF file} \usage{ read_dimension_values(vardef, exclude.dims = NULL, exclude.degener...
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#part1 setwd("C:/Users/Arvind/Desktop/Intermediate Analytics/Week 3") a3 <- read.csv("assignment3.csv") a3 set.seed(12345) train <- floor(0.75*nrow(a3)) train_ind <-sample(seq_len(nrow(a3)),size = train) trainset <- a3[train_ind, ] testset <- a3[-train_ind, ] dim(trainset) dim(testset) names(a3) Mod...
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all1 <- read_csv("Gray value.csv") head(all1) all1$Distance<-as.numeric(all1$Distance) all1$time<-factor(all1$time,levels = c("0 min","5 min","10 min","15 min","20 min","30 min","40 min","50min","60 min")) all1$Treatment<-factor(all1$Treatment,levels = c("high light","0 min")) str(all1) celltype_position <- read_csv(...
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#Read in the power consumption data my_power_data<-read.csv("household_power_consumption.txt", sep=";") # Create date string my_power_dates<-paste(as(my_power_data$Date, "character"), as(my_power_data$Time, "character")) # Put date string in Date format POS_dates<-strptime(my_power_dates, "%d/%m/%Y %T", tz="...
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\name{topgenes} \docType{data} \alias{topgenes} \title{Random Forest Classification genes} \description{ A list of genes required by the random forest classifier. } \usage{topgenes} \format{A character vector of 20 genes required for classification.}
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#these are for exporting output to stata
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####################################################################################### ################ Preprocesing dat a explorační analýza ################################ ############### Adéla Vrtková, Martina Litschmannová ################################## ########################################################...
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library(datadr) ### Name: convert ### Title: Convert 'ddo' / 'ddf' Objects ### Aliases: convert ### ** Examples d <- divide(iris, by = "Species") # convert in-memory ddf to one stored on disk dl <- convert(d, localDiskConn(tempfile(), autoYes = TRUE)) dl
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replace.description.field <- function (version.name, field, entry) { # Replaces given field in the DESCRIPTION file # define DESCRIPTION file based on version.name f <- paste(version.name,"/DESCRIPTION",sep="") # Read DESCRIPTION file lins <- readLines(f) # search the line that contains the f...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/grid_spatialpoints.R \name{grid_spatialpoints} \alias{grid_spatialpoints} \title{Build a map grid spatialpoints} \usage{ grid_spatialpoints( siteSize = 260000, projectionCRS = "+proj=cea +lon_0=0 +lat_ts=30 +x_0=0 +y_0=0 +datum=WGS84 ...
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shinyServer(function(input, output, session) { # get groomsman id from url query (returns FALSE if invalid/missing) groomsman_id = reactive({ query = parseQueryString(session$clientData$url_search) gm_id = query[['gm_id']] if (is.null(gm_id)) gm_id = FALSE if (!(gm_id %in% groomsman_ids)) gm...
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library("dplyr") library("stringr") library("plotly") # load in filtered data set emissions_data <- read.csv(unz("data/filtered_datasets.zip", "filtered_datasets/emissions_data.csv")) fuel_economy_data <- read.csv( unz("data/filtered_datasets.zip", "filtered_datasets/vehicles_individua...
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require(lattice) #To read data file into frame. FinalDataFrame = read.csv("C:\\Users\\admin\\Downloads\\Use_Case_Dhruv\\BindIPLData.csv") #Summary of RunsScored column of FinalData Frame. Summary1 = summary(FinalDataFrame$RunsScored) Summary1 #Standard deviation of RunsScored column of FinalDataFrame. sd1 = sd(FinalDa...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/auxiliary-fun.R \name{Rboot} \alias{Rboot} \title{Risk estimation for a tapered covariance matrix estimator via bootstrap method} \usage{ Rboot(epsilon, treshold, block_size, block_n, model_max, kernel_fonc) } \arguments{ \item{epsilon}{an un...
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#page to be used for loading /7 initiating all the data for the creation of DTF obj os<-Sys.info()["sysname"]; # find the operating system runAll<- function(trPaths,dtfKind, fld=10, betNoBet='nobet',fff='f5'){ exit <- "DTF_END_OK"; #trPaths is a vector with all the tr paths of the competitions # dtfKind is a v...
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# Load Libraries library(tidyverse) library(sf) library(leaflet) library(viridis) # Read in the Shape File municipalities <- read_sf("./dutchesscounty4326/muni_boundaries-polygon.shp") # Read in the geospatial data for Dutchess County Fire & EMS Stations. fire_ems <- read_csv("fire_ems_stations-point.csv") ...
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# Q1 ---------------------------------------------------------------------- dat = data.frame(interview=c("no", "yes"), cases=c(195,46), controls=c(979,370)) dat = data.frame(med_status=c("no", "yes"), cases=c(979,195), controls=c(370,46)) # cases is non-participation dat # Q1 - use med status as predictor ---------...
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######################################### # # # Dave Gerrard # # University of Manchester # # 2011 # # # ######################################### library(topGO) library(ALL) data(ALL) data(geneList) affyLib <- paste(annotation(ALL), "db", sep = ".") library(package = affyLib, character.only = TRUE) sum...
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m <- matrix(c(1, 2, -1, 3, -4, 5, 1, -8, 7), nrow = 3) det(m)
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library(ggplot2) ## set the project Directory projectDirectory <- "/projects/datascience/exploraratorydata/courseproject2" dataDirectory <- paste0( projectDirectory,"/data") setwd( projectDirectory ) ## This first line will likely take a few seconds. Be patient! NEI <- readRDS( paste0( dataDirectory, "/summarySCC_PM2...
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source("helper.R") ## UI #### ui <- shinydashboard::dashboardPage( title = "POMDP solver: When to stop managing or surveying cryptic threatened species ?", # HEADER ############################# shinydashboard::dashboardHeader( title = "smsPOMDP", shiny::tags$li( a( strong("Building an a...
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library(tidyverse) library(magrittr) library(ggplot2) library(ggpubr) library(dplyr) zeolite = read.table("zeolitex_final.tsv", sep = "\t", header = T) colnames(zeolite) %>% data.frame() zeolite <- zeolite %>% mutate_all(na_if,"") ##################### Multicollinearity Analysis #################...
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add2 <- function(a,b){ a + b } above <- function(x,n=10){ use <- x>n x[use] } #calculating mean of each column of dataframe #removeNA used to deal with missing values columnmean <- function(x,removeNA = TRUE){ nc <- ncol(x) #number of columns in df means <- numeric(nc) #empty vector of length number of co...
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power<-read.table("household_power_consumption.txt", sep = ";", header = TRUE) power$Global_active_power<-as.numeric(as.character(power$Global_active_power)) power2day<- power[power$Date %in% c("1/2/2007","2/2/2007") ,] hist(power2day$Global_active_power, xlab = "Global Active Power(kilowatts)", ylab = "F...
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setwd("C:\\Users\\faj\\Documents\\OneDrive for Business\\research\\ch3 - metaanalysis\\data") AbData <- read.csv("AbudnaceOnceRarefy.csv") library(vegan) library(reshape2) #code to calculate evenness change #---------------------------------------------------------------- head(AbData) names(AbData)[2] <- "ab...
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install.packages('igraph') install.packages('network') install.packages('sna') install.packages('ndtv') install.packages('visNetwork') library(igraph) library(network) library(sna) library(ndtv) library(visNetwork) base_1 <- read.csv("C:/Users/camila.valencia/Desktop/Efectos Pares/red1.csv", sep=";") ba...
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\name{flowers} \alias{flowers} \docType{data} \title{Flower} \description{ A data set with the dry mass of all flowers and the dry mass of the total plant from 20 species growing at high and 20 species growing at low altitude. } \usage{data(flowers)} \format{ A data frame with 40 observations on the following 3 vari...
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## Caching the Inverse of a Matrix ## Below are two functions that are used to create a ## special matrix and caches its inverse ## creates the list for cachesolve makeCacheMatrix <-function(x=Matrix()){ inverse<<-NULL setmatrix<-function(y){ x<<-y inverse<<-NULL } getmatrix<-function() x s...
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#' Is vector empty or all NA values. #' ## Copyright(c) 2017-2020 R. Mark Sharp ## This file is part of nprcgenekeepr #' #' @return \code{TRUE} if x is a zero-length vector else \code{FALSE}. #' #' @param x vector of any type. isEmpty <- function(x) { x <- x[!is.na(x)] return(length(x) == 0) }
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grid = array(0, dim = c(15,16)) ## Add Corners grid[1,1] = 114 grid[1,16] = 121 grid[15,1] = 116 grid[15,16] = 121 delta.j1 = (grid[15,1] - grid[1,1]) / 14 delta.j6 = (grid[15,16] - grid[1,16]) / 14 ## Fill in first and last column for (i in c(1:15)) { grid[i,1] = grid[1,1] + delta.j1 * (i-1) grid[i,16] = gri...
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# # This is a Shiny web application. You can run the application by clicking # the 'Run App' button above. # Find out more about building applications with Shiny here: # http://shiny.rstudio.com/ # # Name of application = bank_branches library(shiny) library(dplyr) library(ggplot2) library(rsconnect) library(plotly...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/appstream_operations.R \name{appstream_delete_stack} \alias{appstream_delete_stack} \title{Deletes the specified stack} \usage{ appstream_delete_stack(Name) } \arguments{ \item{Name}{[required] The name of the stack.} } \description{ Deletes ...
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#' @title Return properties of elements from a periotic-table #' #' @description Return properties of elements from a periotic-table. #' Specify property of your concern otherwise this return dataframe #' of periodic table. #' #' @param property A name of PROPERTY that is one of 'atomicnumber', #' 'volatility', ...