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#' @name perform.scanpy #' @aliases perform.scanpy #' #' @title Performs Scanpy normalisation, hvg selection, scaling and variance stabilisation and regression. #' #' @description A new method-assay is produced. Raw counts are normalised and HVGs identified using Scanpy #' #' @param object IBRAP S4 class object #' @...
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###### Exloratory Data Analysis ###### ########### Assignment 1 ############# ############### Plot 4 ############### dataset<-read.table("household_power_consumption.txt",sep=";",header=T) data<-dataset[66637:69516,] #Only two days data[,3]<-as.numeric(levels(data[,3])[data[,3]]) data[,4]<-as.numeric(levels(data[,4])...
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library(shiny) library(charlatan) source('utils.R') variables <- c( 'Name' = 'name', 'Job Title' = 'job', 'Phone Number' = 'phone_number', 'Email' = 'email', 'City' = 'city' ) ui <- fluidPage( titlePanel('fakeR: Generate fake data'), sidebarLayout( sidebarPanel( checkboxGroupInput( ...
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2+5 # demo comment print("hello world") x <- 2 x <- 3 x y <-c(1,2,3,4,5) y <-1:10 x <- y <-1:10 x+y z <- x+y z2 <- x*y X <- 10 ls() rm(X) remove(z2) rm(list = ls())
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/format_mr.r \name{recode_dat_intercept} \alias{recode_dat_intercept} \title{Intercept recoding to have every effect on x positive} \usage{ recode_dat_intercept(dat) } \arguments{ \item{dat}{Output from get_effs} } \value{ Data frame } \descri...
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marfissci.get.data <- function(spp = NULL, gear=NULL, years = NULL, get.nonlandings=T, save.csv=T) { channel <- ROracle::dbConnect( DBI::dbDriver("Oracle"), dbname="PTRAN", username = oracle.personal.username, password = oracle.personal.password) #'MMM March 31, 2016 #'This is a marfissci extraction that can...
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#' Create project hub files in root directory #' @return logical for succesful creation or not #' @export #' plant.orchard <- function(){ # orchard.site <- file.path(path.expand.2("~"),"ProjectPaths","projectid_2_directory.csv") if(!file.exists(orchard.site)){ dir.create(file.path(path.expand...
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vect <- c(T, F, T, F, F, F, T) as.numeric(vect) vec <- 1:10 vec[5]<1 # if(respect ou pas de la condition){ # action a predre # } for(i in 1:10){ print("Bonjour") } rep("Bonjour", 10) for(i in 1:5){ if(i==2){ next } print(paste("Bonjour le chiffre ", i )) } for(i in 1...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/banner.R \name{banner} \alias{banner} \title{Banner Function} \usage{ banner(inputId, type, label) } \arguments{ \item{inputId}{The input slot that will be used to access the value.} \item{type}{Main type of label e.g. alpha or beta. Can be...
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setwd("F:\\Coursera\\GettingAndCleaningData\\getdata-project") train = read.table("./UCI HAR Dataset/train/X_train.txt") dim(train) print(object.size(train), unit = "MB") test = read.table("./UCI HAR Dataset/test/X_test.txt") dim(test) print(object.size(test), unit = "MB") head(test) features = read.table("./UCI HAR D...
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library(RgoogleMaps) ### Name: GetMap ### Title: download a static map from the Google server ### Aliases: GetMap ### ** Examples lat = c(40.702147,40.718217,40.711614); lon = c(-74.012318,-74.015794,-73.998284); center = c(mean(lat), mean(lon)); zoom <- min(MaxZoom(range(lat), range(lon))); #this ov...
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#============================================================================== # FILENAME: ui.R # PROJECT: Pooled testing in HIV # PURPOSE: ui.R file for the shiny program shinypopfit # # # AUTHOR: Adam Brand # INPUT datasets: none # OUTPUT: none, this is a user interface for the a shiny app ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/insuranceModels.R \name{endowport} \alias{endowport} \alias{z.moment.iport.endowport} \title{Endowment insurance portfolio (identical policies)} \usage{ \method{z.moment}{iport.endowport}(moment, ins, mort, irm) } \description{ A po...
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# Read the raw data data <- read.table("./household_power_consumption.txt", header = TRUE, stringsAsFactors = FALSE) # Convert the first column to date data[,1] <- as.Date(data[,1], format = "%d/%m/%Y") # Extract data from the dates 2007-02-01 and 2007-02-02 data1 <- subset(data, data[,1]>="2007-02-01" & data[,1]<="2...
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# Hello, world! # # This is the script containing the functions to # initialize the centroids # # Author: Gabriela Borges # Data Inicial: 10-03-2019 # Data da Última Modificação: 10-03-2019 #' Initializes the clusters using the traditional approach. #' #' @param data A dataframe. #' @param k A integer number. #' @r...
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rm(list=ls()) #about glmnet #glmnet(x, y, family=c("gaussian","binomial","poisson","multinomial","cox","mgaussian"), # weights, offset=NULL, alpha = 1, nlambda = 100, # lambda.min.ratio = ifelse(nobs<nvars,0.01,0.0001), lambda=NULL, # standardize = TRUE, intercept=TRUE, thresh = 1e-07, dfmax = nvars...
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library(XML) library(RCurl) library(xlsx) URL <- getURL("http://patents.reedtech.com/parbft.php") rt <- readHTMLTable(URL, header = TRUE) rt url <- "http://patents.reedtech.com/parbft.php" doc <- htmlParse(url) links <- xpathSApply(doc, "//a/@href") free(doc) links write(links, file="upto_links.txt") # wget --no-pro...
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library(DT) library(shiny) library(dplyr) library(plotly) library(tableone) library(data.table) library(tidyverse) library(shinydashboard) library(shinyWidgets) library(shinycssloaders) library(wesanderson) cores <- wes_palette("BottleRocket1", 5)[3:5] icu_cohort <- readRDS("icu_cohort.rds") icu_cohort <- icu_cohort...
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#LAB 4 #Heatmap(), image(), and hierarchical clustering example set.seed(12345) help(par) par(mar = rep(0.2,4)) data_Matrix <- matrix(rnorm(400), nrow = 40) image(1:10, 1:40, t(data_Matrix)[,nrow(data_Matrix):1]) par(mar=rep(0.2,4)) heatmap(data_Matrix) set.seed(678910) for (i in 1:40) { coin_Flip <- rbinom(1, ...
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# Exercise 2: writing and executing functions (II) # Write a function `CompareLength` that takes in 2 vectors, and returns the sentence: # "The difference in lengths is N" CompareLength<-function(a,b){ dif<-abs(length(a)-length(b)) all<-paste("The difference in lengths is ", dif) return(all) } # Pass two vector...
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library(tidyverse) library(ggalluvial) library(extrafont) media <- read_csv("https://raw.githubusercontent.com/rfordatascience/tidytuesday/master/data/2019/2019-07-02/media_franchises.csv") media_clean <- media %>% mutate(original_media_lumped = fct_lump(original_media, 8), revenue_category = case_when(rev...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ptt-handy.R \name{as_url} \alias{as_url} \title{Turn PTT board name to URL} \usage{ as_url(x, pre = "https://www.ptt.cc/bbs/") } \arguments{ \item{x}{Character. A board name or a partial URL (ending in \code{.html}) with base URL removed.} \...
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setwd("W:/WorkingData/GHS39/GLAHD/Varhammar_A/") #load some libraries library(raster) library(rgdal) library(stringr) library(scales) #load file seed_atsc<- read.csv("GLAHDseed.csv") #load known distribution d <- read.csv("distributions_bioclimv2.csv") dist <- subset(d,d$Coordinate.Uncert...
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testthat::context("coverage history") testthat::describe("fetch md files", { testthat::skip_on_ci() file.copy("../assets/covrpage_benchmark/covrpage", tempdir(), recursive = TRUE) td <- file.path(tempdir(), "covrpage") wd <- getwd() setwd(td) repo <- git2r::init() git2r::add(repo, path = ".") git2r::c...
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# package import library(dplyr) library(ggplot2) # 1. 컬럼 이름 변경 df_raw <- data.frame(var1 = c(1, 2, 1), var2 = c(2, 3, 2)) df_raw df_new <- df_raw df_new2 <- rename(df_new, v1 = var1, v2 = var2) df_new2 colnames(df_raw) colnames(df_raw) <- c("vx", 'vy') df_raw ##### copied_mpg <- mpg copie...
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%% \name{TCGA.PAM50_genefu_hg18} \alias{TCGA.PAM50_genefu_hg18} \docType{data} \title{ BRCA PAM50 gene list (hg18) } \description{ Breast cancer PAM 50 gene list (hg18). } \author{ %% ~~ possibly secondary sources and usages ~~ Ying Hu <yhu@mail.nih.gov> Chunhua Yan <yanch@mail.nih.gov> }
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library(wavethresh) ### Name: InvBasis.wp ### Title: Invert a wp library representation with a particular basis spec ### Aliases: InvBasis.wp ### Keywords: smooth ### ** Examples # # The example in InvBasis.wst can be used here, but replaced wst by wp #
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context("Testing Giving Presents") test_that("Presents gives presents",{ expect_message(Presents(), "^Hello,") expect_message(Presents(), "Here's some car data for you:") expect_output(Presents(), "mpg|cyl|disp|hp|drat|wt|qsec|vs|am|gear|carb") }) test_that("Data generated is subset of mtcars", { e...
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library(randomForest) library(RJSONIO) library(ROCR) # Research Questions # 1. What are the ranked importances of node encodings? # 2. What are the ranked importances of edge encodings? # 3. How important is network structure to noticeability? # 3a. Where do participants tend to click? #Converting HEX color to INT r...
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#' transform_samples #' @description A functional to transform metabolomics data across samples. #' @param count_data Metabolomics data #' @param func a function to transform samples by. can be an anonymous function #' @examples #' data_ln <- transform_samples(count_data = c57_nos2KO_mouse_countDF, log) #' @export tra...
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#' Perform a global alignment of labelings on a set of objects #' #' Greedily group cell labelings and recode them into a single tibble #' #' @param labels a list of factors with labelings #' @param cells a character vector of all cells ids in the experiment #' #' @importFrom tibble as_tibble enframe #' @importFrom dp...
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#makeCacheMatrix creates a list of 4 functions to store a matrix and a cached value of it's inverse #set the value of the vector #get the value of the vector #set the value of the mean #get the value of the mean makeCacheMatrix <- function(x = matrix()) { m <- NULL set <- function(y) { x <<- y m <<- NU...
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tabPanel('Visualize', value = 'tab_viz', icon = icon('line-chart'), navlistPanel(id = 'navlist_viz', well = FALSE, widths = c(2, 10), source('ui/ui_bar.R', local = TRUE)[[1]], source('ui/ui_bar2.R', local = TRUE)[[1]], source('ui/ui_box.R', local = TRUE)[[1]], source('ui...
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parse_year <- function(recs) { recs %>% dplyr::mutate(parsed_date = parse_date_time(datecollected, c("Y", "ymd", "ym", "%Y-%m-%d%H:%M:%S%z"))) %>% dplyr::mutate( year = year(parsed_date), year = replace(year, year > 2017 | year < 1850, NA), year = as.integer(year) ) %>% dplyr::select...
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# Librerias y prerequisitos: # . gunzip # . R librarys library(funr) library(lubridate) library(reshape) library(stringr) library(trend) library(data.table) library(tidyverse) library(magrittr) library(lazyeval) library(foreach) ## DIRECTORIO PRINCIPAL # dirCurrent <- paste0(get_script_path(), "/", sep = "", coll...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/methods_expl_reg.R \name{summary.expl_reg} \alias{summary.expl_reg} \title{Summarize an instance of \code{expl_reg}} \usage{ \method{summary}{expl_reg}(object) } \arguments{ \item{object}{an instance of \code{expl_reg}.} } \value{ a 1-row \co...
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#명사 추출 #여행지 조사(사전에 builddictionary 후 다시 추출) install.packages('multilinguer') library(multilinguer) install.packages(c('stringer', 'hash', 'tau', 'Sejong', 'RSQLite','devtools'), type = 'binary') install.packages('remotes') remotes::install_github('haven-jeon/KoNLP', upgrade='never', ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/network_functions.R \name{group2list} \alias{group2list} \title{Named list of cells grouped by meta feature from Seurat object} \usage{ group2list(object, group = "seurat_clusters", is.num = F, prefix = "") } \arguments{ \item{object}{Seurat ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utility.R \name{ifelse_pipe} \alias{ifelse_pipe} \title{This is a generalisation of ifelse that acceots an object and return an objects} \usage{ ifelse_pipe(.x, .p, .f1, .f2 = NULL) ifelse_pipe(.x, .p, .f1, .f2 = NULL) } \arguments{ \item{.x...
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#' Offset a latitude/longitude by some amount of meters #' #' @param lat latitude of the starting point(s) in decimal degree #' @param lon longitude of the starting points(s) in decimal degree #' @param de offset towards east (in meter) #' @param dn offset towards north (in meter) #' #' @return latitud and longitude o...
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library(datasets) # read in the data, and name the columns since we're skipping the first row (and other rows) t<-read.table("household_power_consumption.txt", skip=66637 ,nrows=2880, sep=";") colnames(t) = c("Date","Time","Global_active_power","Global_reactive_power","Voltage","Global_intensity","Sub_metering_1","Sub...
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library(igraph) links <- read.csv("trimmed_strain_pair_hgts.txt", header=T, as.is=T) nodes <- read.csv("strains_network_nodes.txt", header = T, as.is=T) links <- aggregate(links[,3], links[,-3], sum) links <- links[order(links$from, links$to),] colnames(links)[4] <- "weight" rownames(links) <- NULL net <- graph_from_da...
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#' @title Read Multiple Files #' #' @description This function reads several NIfTI files. #' #' @param file_list (list) Path of files to import #' #' @return A list with one entry for each file read. #' #' @export #' read_nifti_batch <- function(file_list) { return(lapply(file_list, read_nifti_to_array)) }
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\name{MaxentVariableSelection-package} \alias{MaxentVariableSelection} \docType{package} \title{Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling} \description{Complex niche models show low performance in identifying the most important...
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#' Computes a genomic relationship matrix G=xx'. #' #' Offers options for centering and scaling the columns of x before computing #' xx'. If \code{centerCol=FALSE}, \code{scaleCol=FALSE} and #' \code{scaleG=FALSE}, \code{getG} produces the same outcome than #' \code{tcrossprod}. #' #' @param x matrix, ff_matrix, rmmM...
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#Jonas Harjunpää 04.02.2017 #This file contains the wrangled data of a study about student alcohol consumpiton #from here https://archive.ics.uci.edu/ml/datasets/STUDENT+ALCOHOL+CONSUMPTION setwd("C:/Users/Jonas/Documents/GitHub/IODS-project/data") getwd() # read the math class questionaire data into memory math <- rea...
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library("shiny") library(plotly) library(shinythemes) library(tidyverse) require("maps") library(geosphere) library(stringr) library(rgdal) library(caret) library(lubridate) # library(maptools) if (!require(ggmap)) { install.packages('ggmap'); require(ggmap) } library(ggmap) install.packages here_long <- -122.3095 her...
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# 9.1 auctions.df <- read.csv("eBayAuctions.csv", header=T) train.index <- sample(rownames(auctions.df), 0.6*dim(auctions.df)[1]) valid.index <- setdiff(rownames(auctions.df), train.index) train.df <- auctions.df[train.index,] valid.df <- auctions.df[valid.index,] library(rpart) library(rpart.plot) class.tree <- ...
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### Assemble directed dyad predictions into a single data frame, then calculate ### the undirected scores library("tidyverse") library("assertr") library("foreach") sessionInfo() ## Load up the results from each individual year scoring, validate, and extract doe_dir_dyad <- foreach (yr = 1816:2012, .combine = "rbin...
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library(dbparser) ### Name: parse_drug_enzymes_polypeptides_go_classifiers ### Title: Extracts the drug groups element and return data as data frame. ### Aliases: parse_drug_enzymes_polypeptides_go_classifiers ### ** Examples ## No test: parse_drug_enzymes_polypeptides_go_classifiers() parse_drug_enzymes_polypepti...
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rm(list = ls()) library(jsonlite) library(ggplot2) source("/Users/ericang/Documents/Courses/Psych254/zt12rp/data_analysis/helper/useful.R") raw.data.path <- "/Users/ericang/Documents/Courses/Psych254/zt12rp/production-results/" processed.data.path <- "/Users/ericang/Documents/Courses/Psych254/zt12rp/data_analysis/proc...
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library(xts) library(hash) library(data.table) library(dplyr) library(dygraphs) library(plotly) df = fread("../data/coc.csv") df$Complaint.Date <- as.Date(df$Complaint.Date, format = "%m/%d/%Y") df$Resolution.Date <- as.Date(df$Resolution.Date, format = "%m/%d/%Y") df$NumComplaints <- 1 choicesForTime <- c("Daily", "...
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\name{createSpellConfig} \alias{createSpellConfig} %- Also NEED an '\alias' for EACH other topic documented here. \title{Create a new aspell configuration object.} \description{ This function creates a new apsell configuration object and allows the caller to set options within that. Options can also be set later...
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## toyCarLine.r ## Federico Garza de Leon fgarzadeleon@gmail.com ## plot the cars data as an example plot(cars) z <- line(cars) abline(coef(z), col = "purple") dev.print(pdf, "toyLinePlot.pdf")
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`varNamesToChar` <- function (varnam) { tmp2 <- "" tmp1 <- strsplit(varnam, ", ")[[1]] for (i in 1:length(tmp1)) { tmp2 <- paste(tmp2, tmp1[[i]], "\", \"", sep = "") } return(tmp2) }
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context("Test reading Bro file formats") test_that("Bro app logs can be read", { file <- system.file("extdata/app_stats.log", package = "webreadr") data <- read_bro(file) expect_equal(nrow(data), 1) expect_equal(ncol(data), 6) expect_equal(class(data$timestamp), c("POSIXct","POSIXt")) }) test_that("B...
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run_analysis <- function() { # 1. Merge the training and the test sets. s_test <- read.table('./UCI HAR Dataset/test/subject_test.txt') s_train <- read.table('./UCI HAR Dataset/train/subject_train.txt') s_merged <- rbind(s_train, s_test) names(s_merged) <- "subject" ...
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## ----setup, include = FALSE--------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE , comment = "##" , tidy = TRUE , fig.width=7 , fig.height=7 ) ## ---- message = FALSE--------------------------------------------------------- library("DirichletReg") head(ArcticLake) AL...
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################# main data structure ############################## #dgtDataList #dgtDataList[imgId][[1]]: speciman dir #dgtDataList[imgId][[2]]: font #dgtDataList[imgId][[3]]: number of landmark #dgtDataList[1][[4]]: curves #dgtDataList[imgId][[5]]: template #dgtDataList[imgId][[6]]: rotation #dgtDataList[imgId][[7]]...
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# week 4 # read the data NEI <- readRDS("./data/summarySCC_PM25.rds") SCC <- readRDS("./data/Source_Classification_Code.rds") library(dplyr) library(ggplot2) NEI$year <- as.factor(NEI$year) # extract the data of Baltimore City (fips == "24510") dat_24510 <- subset(NEI, NEI$fips == "24510") # extract the data of Los...
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### Logistic regression r=c(32,38) n=c(107,59) sex=c(1,0) counts=cbind(r,n-r) model=glm(counts~sex,family=binomial("logit")) result=summary(model,corr=TRUE) result$coefficients result$corr ### Predicted probability of sex=0 phat0=1/(exp(-result$coefficients[1])+1) upper=1/(exp(-result$coefficients[1]-qn...
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#' AND SQL filter #' makes an 'AND' filter statement #' #' #' @param field_name The name of the fild in the data base. #' @param values The values to be filtered #' @return A \code{character} containing the SQL statement. #' @details #' @export #' @examples #' vector_to_sqlfilter(field_name = 'country', #'...
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#' Sample from the rows of a (possibly large) database table (NOT IMPLEMENTED) #' #' Access a database table directly. Return a data.frame whose rows are the sample. #' #' @param n numeric, size of sample to be taken. #' @param db connection, connection to the database table containing the data. #' @return data....
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setwd("/Users/richa/Desktop/Random Crap/School Stuff/") library(readxl) HUDData<-read_xlsx("/Users/richa/Desktop/Random Crap/School Stuff/Data_Level2_HUD_HUDPrograms_Fulldataset.xlsx") drops <- c("Year", "HEAD_ID","CHLDRN_AGE_0_3_CNT", "CHLDRN_AGE_4_5_CNT","CHLDRN_AGE_6_12_CNT", "CHLDRN_AGE_13_17_CNT", ...
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\name{sav_gol} \alias{sav_gol} \title{Savitzky-Golay filter} \description{ A Savitzky-Golay filter to either clean the data from high frequency noise or to get a better estimate of its derivative of a chosen order.} \usage{ sav_gol(series, l, x = 0, c, m, n = "2,2", p = 2, D = 0) } \arguments{ \item{series}{a vector...
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# Making Plot 1 - Histogram of the Global active power # Loads and adds the package "data.table" library("data.table") # Returns the current directory before the change, invisibly and with # the same conventions as getwd. setwd("C:/Users/Pabricio Marcos/Desktop/Coursera/curso") # Reads the data GAP (Global active...
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Mex<-c(MIST2$MEX) Tur<-c(MIST2$TUR) Ind<-c(MIST2$IND) Combine_Groups<-data.frame(cbind(Mex,Tur,Ind)) Combine_Groups Stack_Groups<-stack(Combine_Groups) Stack_Groups Anova_Results<-aov(values~ind,data=Stack_Groups) summary(Anova_Results) TukeyHSD(Anova_Results) pairwise.t.test(Stack_Groups$values,Stack_Group...
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## Exercise set 3 # Exercise 1 plot_colour <- function(x1,x2,U1) { # x1, x2 data vecots # U1 contains the values of the projection (which we use for the colouring of # the data in x1 and x2) ncol = 50 # number of colours used myCol = rainbow(ncol, start = 0, end = 5/6) ra <-range(U1) d <-(ra[2]-ra[1]...
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######################################## # #Download the files into "RawData" # ######################################## setwd("./RawData") download.file() ########################################
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\name{end.TScanonicalPrediction} \alias{end.TScanonicalPrediction} \alias{start.TScanonicalPrediction} \alias{frequency.TScanonicalPrediction} \alias{periods.TScanonicalPrediction} \title{Specific Methods for TScanonicalPrediction} \description{See the generic function description.} \usage{ \method{end}{TScanonica...
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repeatsarms <- read.table("repeats_arms.dat",header=T) repeatsctr <- read.table("repeats_center.dat",header=T) pdf("repeats.pdf") boxplot(repeatsarms$TOTAL,repeatsctr$TOTAL,main="repeats Density BoxPlot", outline=FALSE, names=c("Arms","Center"))
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setref <- function(reference.group, levs){ if (length(reference.group)!=1) stop("Argument 'reference.group' must be a numeric or a character string.", call.=FALSE) ## if (is.numeric(reference.group)){ if (is.na(reference.group)) stop("Missing value not allowed in argument 'reference.group'.", call.=...
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#' Configure the templating engine #' #' Create an object to configure the templating engine behavior (e.g. customize #' the syntax). The default values have been chosen to match the Jinja defaults. #' #' @note The equivalent Jinja class is `Environment`, but this term has special #' significance in R (see [environment...
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########################################################################### # The Effect of Vitamin C on Tooth Growth in Guinea Pigs ########################################################################### # #The response is the length of odontoblasts (teeth) in each of 10 guinea #pigs at each of three dose levels ...
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# 10/29/2016. Author: Ana Brandusa Pavel library(markdown) step.names=c("gene filter" , "feature selection" , "biomarker size" , "classification" ) step.labels=c("Feature filter" , "Feature ranking" , "Size selection" , "Classification" ) names(step.names) = step.labels box.col = c("blue", "magenta", "orange", "brown...
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% Generated by roxygen2 (4.1.1): do not edit by hand % Please edit documentation in R/aftbino.mbe.R \name{aftbino.mbe} \alias{aftbino.mbe} \title{aftbino.mbe} \usage{ aftbino.mbe(count, estimated.richness = NULL, conf.level = 0.95) } \description{ aftbino.mbe } \keyword{internal}
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## Below are two functions that are used to create a special object that ## stores a matrix and cache's its inverse. ## The first function, makeCacheMatrix creates a special "matrix" object ## in a list containing a function to ## 1.set the value of the input matrix in cache ## 2.get the value of the cache matri...
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## Matrix inversion is usually a costly computation and their may be some ## benefit to caching the inverse of a matrix rather than compute it repeatedly ## Below are 2 functions that cache the inverse of a matrix. ## makeCacheMatrix creates a special "matrix" object that can cache its inverse ## It is a list contai...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{z_HY} \alias{z_HY} \title{Hall-Yarborough tidy dataset} \format{An object of class \code{data.frame} with 28 rows and 5 columns.} \usage{ z_HY } \description{ 28 observations of 5 variables } \keyword{...
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#' @title Plotting function for q-value object #' @description #' Graphical display of the q-value object #' #' @param x A q-value object. #' @param rng Range of q-values to show. Optional #' @param \ldots Additional arguments. Currently unused. #' #' @details #' The function plot allows one to view several plots: #' ...
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#------------------------------------------------------------------------------- # Description: Time Series Analysis Forecast for AIoT # Project Name: # Name: Multi-Season Time Series Analysis # Author: Song yongjun # DateTime: 2019/7/5 14:49 #--------------------------------------------------...
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library(shiny) library(shinythemes) library(jsonlite) library(ggplot2) library(DT) library(pracma) library(stringr) #read in Fama & French information before app processing starts annual_market_returns <- as.data.frame(read.csv("annual_FF.CSV")) monthly_market_returns <- read.csv("monthly_FF.CSV") daily_market_retur...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/zz_help_files.R \name{sf_collapse} \alias{sf_collapse} \title{sf_collapse} \usage{ sf_collapse(x, collapse) } \arguments{ \item{x}{A character vector} \item{collapse}{A single string} } \value{ A single string with all values in `x` pasted t...
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tidyD <- read.csv(file= "/home/Documents/spotify/TidyData_assignment2.csv") #hypothesis :- Rating and Liked(+ve Feedback) of products must be interrelated table(tidyD$Rating) table(tidyD$Liked) table(tidyD$Rating,tidyD$Liked) #checking statistical independance between rating and liked(+ve feedback) using chi-squared...
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# Copyright (c) 2018 ISciences, LLC. # All rights reserved. # # WSIM is licensed under the Apache License, Version 2.0 (the "License"). # You may not use this file except in compliance with the License. You may # obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0. # # Unless required by applicab...
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relatedness_plots.R
## Script used to generate plots of kinship and relatedness using PLINK outputs ## kinship from 'plink --make-king-table' ## relatedness from 'plink --pca' ## written 12 Jan 2021 by Devon O'Rourke library(tidyverse) library(ggpubr) library(scico) library(ggrepel) library(scales) ######################################...
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Daenecompass/eliter
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refs/heads/master
2023-03-17T18:19:04.883599
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dev_ancestry.R
# Ancestry ---- # An ancestry graph is a graph which only contains directed edges between CEOs and the chairmen who elected them. library(eliter) library(readr) den.db <- read_delim(file = "~/Dropbox/GNA/Til DST/den_cvr.csv", delim = ",")
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/data/genthat_extracted_code/NightDay/examples/plot.NightDay.Rd.R
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surayaaramli/typeRrh
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refs/heads/master
2023-05-05T04:05:31.617869
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plot.NightDay.Rd.R
library(NightDay) ### Name: plot.NighDay ### Title: Night and Day Boundary Plot Funtion ### Aliases: plot.NightDay ### ** Examples Time <- Sys.time() timezone <- 1 plot(NightDay(Time, timezone))
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belugadb/druid-benchmark
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plot-results.R
library(plyr) library(ggplot2) library(reshape2) benchmarks = list( `druid` = "druid-m3-2xlarge.tsv", `mysql` = "mysql-m3-2xlarge-ssd-myisam.tsv", `druid-100-x1` = "100gb-druid-m3-2xlarge-1x.tsv", `mysql-100` = "100gb-mysql-m3-2xlarge-ssd-myisam.tsv", `druid-100-x6` = "100gb-druid-m3-2x...
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/abcstats/man/dnn_predict_slow.Rd
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snarles/abc
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fefa42cf178fd40adca88966c187d0cd41d36dcb
refs/heads/master
2020-12-24T17:35:48.864649
2015-07-23T06:07:14
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dnn_predict_slow.Rd
% Generated by roxygen2 (4.1.0): do not edit by hand % Please edit documentation in R/slow.R \name{dnn_predict_slow} \alias{dnn_predict_slow} \title{Predict given DNN and tanh transfer function} \usage{ dnn_predict_slow(Ws, bs, x) } \arguments{ \item{Ws}{Weight matrices of DNN} \item{bs}{Bias terms of DNN} \item{x}{N...
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/R/assoc.R
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cran/vcd
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refs/heads/master
2023-02-02T18:55:54.519633
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assoc.R
#################################################################333 ## assocplot assoc <- function(x, ...) UseMethod("assoc") assoc.formula <- function(formula, data = NULL, ..., subset = NULL, na.action = NULL, main = NULL, sub = NULL) { if (is.logical(main) && main) main <- deparse...
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/R/jh1511_1.R
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toyofuku/StatisticalLearning
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refs/heads/master
2020-03-28T15:49:05.402057
2018-09-18T08:21:35
2018-09-18T08:21:35
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jh1511_1.R
### Variational Bayes of Normal Mixture ############################ rm(list=ls()) ##close all ############################################################################# K0 <- 3 ### True clusters STDTRUE <- 0.3 ### True Standard deviation of each clusters K <- 3 ### Components of learn...
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/cachematrix.R
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djwf/ProgrammingAssignment2
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refs/heads/master
2021-01-15T00:56:45.118170
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cachematrix.R
## Create method of storing matrices and calculating their inversions that only ## calculates the inversion for a given matrix once. ## Cached matrix data type (functions to store/retrieve matrix/inversion). makeCacheMatrix <- function(x = matrix()) { m = NULL set <- function(y) { x <<- y m <<- NULL } ...
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iamchuan/NYC-TaxiVis
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ref_sqlvis_raster.R
### Big data tile plot # data <- tbl(sc, "trips_model_data") # x_field <- "pickup_longitude" # y_field <- "pickup_latitude" # resolution <- 50 sqlvis_compute_raster <- function(data, x_field, y_field, resolution = 300){ data_prep <- data %>% select_(x = x_field, y = y_field) %>% filter(!is.na(x), !is.na(...
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/R_create_Visuals/dep_by_model.R
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no_license
lin1234227/EDA-Luxury-Sedan-Residual-Values
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refs/heads/master
2020-04-23T19:06:31.408324
2017-08-06T16:41:33
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dep_by_model.R
cars <- read.csv("~/Document/data_science/Visual/R_create_Visuals/dataset/dep_by_model.csv", header=TRUE, stringsAsFactors=FALSE, row.names = 1) cars['year'] = 2017-cars['year'] png(filename="~/Document/data_science/Visual/R_create_Visuals/png/dep_by_model.png") cars1<-subset(cars, model_level==1) cars2<-subset(cars, ...
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/plot2.R
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[]
no_license
Megan-Gee/ExData_Plotting1
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refs/heads/master
2022-11-14T00:35:20.604303
2020-07-07T22:40:02
2020-07-07T22:40:02
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plot2.R
## Read data file into R and subset to only two dates of information full_data <- read.table("household_power_consumption.txt", sep = ";", header = TRUE, na.strings = "?") full_data$DT <- paste(full_data$Date, full_data$Time) full_data$DT <- strptime(full_data$DT, format = "%d/%m/%Y %H:%M:%S")...
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JeffreyRacine/R-Package-crs
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2023-01-09T18:23:59.615927
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crs-package.Rd
\name{crs-package} \alias{crs-package} \docType{package} \title{Nonparametric Regression Splines with Continuous and Categorical Predictors} \description{ This package provides a method for nonparametric regression that combines the (global) approximation power of regression splines for continuous predictors (\sQuo...
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/Unit 3 - Assignment/Predicting the Baseball World Series Champion (OPTIONAL) _ Assignment 3 _ 15.R
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florintoth/The-Analytics-Edge
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Predicting the Baseball World Series Champion (OPTIONAL) _ Assignment 3 _ 15.R
# PREDICTING THE BASEBALL WORLD SERIES CHAMPION (OPTIONAL) # Problem 1 baseball = read.csv("baseball.csv") str(baseball) length(table(baseball$Year)) baseball = subset(baseball, Playoffs == 1) nrow(baseball) table(table(baseball$Year)) # Problem 2 PlayoffTable = table(baseball$Year) PlayoffTable names(PlayoffTab...