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spcv_inner_fiveF <- makeResampleDesc("SpCV", iters = 5) spcv_outer_fiveF_hundredR <- makeResampleDesc("SpRepCV", folds = 5, reps = 100)
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library(pdmod) ### Name: calculateResponse ### Title: Calculate response from the estimate ### Aliases: calculateResponse ### ** Examples calculateResponse(0.8, 10, runif(20))
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setwd("/Volumes/Data Science/Google Drive/data_science_competition/kaggle/Santander_Customer_Satisfaction/") rm(list = ls()); gc(); require(data.table) require(purrr) require(caret) require(xgboost) require(Ckmeans.1d.dp) require(Metrics) require(ggplot2) require(DMwR) source("utilities/preprocess.R") source("utilities...
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## Helper function for bivariate pearson correlation. pearson = function(data) { cormatrix = cor(data, method="pearson") cormatrix[1, 2] } survcorr = function ( formula1, # Formula for defining time-to-event 1, e.g. Surv(TIME1, STATUS1) ~ 1. formula2, # Formula for defining time-to-event 2, =Surv(TI...
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##################################################################################################### ###################################### GLOBAL FILE #################################################### ####################################################################################################### # Load li...
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\name{tsne-package} \Rdversion{1.1} \alias{tsne-package} \docType{package} \title{The tsne-package for multidimensional scaling} \description{ This package contains one function called \link[tsne]{tsne} which contains all the functionality. } \details{ \tabular{ll}{ Package: \tab tsne\cr Type: \tab Package\cr Version...
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access_date = Sys.Date() indprod = rio::import("ind_baza_2018.xlsx", skip = 2, sheet = 1) indprod_vector = t(indprod[2, 3:ncol(indprod)]) indprod_ts = stats::ts(indprod_vector, start = c(2015, 1), frequency = 12) indprod_tsibble = tsibble::as_tsibble(indprod_ts) indprod_tsibble = dplyr::rename(indprod_tsibble, date = i...
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#install.packages("MASS") library(MASS) #Flaws and functions(Pg no. 49) defective_and_surface_flawed = 2 total_defective_parts = 20 total_surface_flawed = 40 P = fractions((defective_and_surface_flawed*defective_and_surface_flawed)/(total_defective_parts*total_surface_flawed)) print(P) cat("probability of surface fla...
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x <- 1 y <- 2 sum_of_xy <- y + x diff_of_xy <- y - x increase_x <- x + 2000 my_favourite_color <- "Blue" ggplot(mpg) + geom_point(aes(x = cyl, y = mpg))
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## Adapted from Robyn Wootton's script for the paper - Causal effects of lifetime smoking on risk for depression and schizophrenia: Evidence from a Mendelian randomisation study ########################################################################## #1. Read in data ##############################################...
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# # run_analysis.R # Code Description: # This is the main file that must be called. # Created for a Coursera Course Project. run_analysis <- function(){ #loads the libraries needed by the script, just in case it is not yet loaded #also loads the user-defined scripts: functions.R and merge.R prin...
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loadFileExpr = function(f_name, ...) { n_args = nargs() f_name %>% file_ext %>% tolower %>% switch( 'rds' = expr(read_rds), 'csv' = if(n_args > 1) expr(read_csv(!!!(rlang::list2(...)))) else expr(read_csv), 'tsv' = if(n_args > 1) expr(read_tsv(!!!(rlang:...
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## @knitr eda ##Ngoné Lo ## March 2020 #### Set up workspace ### #Importing libraries library(tidyverse) library(janitor) # Helps with initial data cleaning and pretty tables #Loading dataset loan_data <- read_csv("outputs/datasets/loan_data_cleaned.csv") #First we take a look at the prediction variabl...
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\name{grasp.mod.anova} \alias{grasp.mod.anova} \title{ Internal GRASP function } \description{ An ANOVA table is constructed by testing the significance of removing in turn each predictor from the selected model. } \usage{ grasp.mod.anova(gr.Yi) } \arguments{ \item{gr.Yi}{A vector containing the selected re...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/read-seepolizei.R \name{convert_date_seepolizei} \alias{convert_date_seepolizei} \title{Helper function to ensure correct string format} \usage{ convert_date_seepolizei(x) } \arguments{ \item{x}{date as string, POSIXct, POSIXlt or Date Object...
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summary.mgm <- function(object, data = NULL, ...) { # ---------- Loop over Time Steps ---------- out_list <- list() # stationary or time varying? if('tv.mgm' %in% class(object) | 'tv.var' %in% class(object)) { tsteps <- object$call$tsteps } else { tsteps <- 1 } ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dispersion.ADM.R \name{dispersion.ADM} \alias{dispersion.ADM} \title{Absolute Deviation From Median} \usage{ dispersion.ADM(x) } \arguments{ \item{x}{Vector to compute ADM values for.} } \value{ Vector with results of ADM calculation. } \desc...
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# yearly mods <- c('drivers', 'arch', 'net', 'sound', 'fs', 'kernel', 'mm') tsel <- delta$mod %in% mods #& delta$y >= 2010 res <- t2apply((1:numofdeltas)[tsel], delta$y[tsel], delta$mod[tsel], function(x) { # t <- c(length(x), numOfUnique(delta$aid[x]), numOfUnique(delta$cid[x]), # numOfUnique(delta$ae[x]), nu...
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for (number in 1:5) { print(number) } # the contents go under the {} for(i in 1:5) { print (i^2) } for (i in 1:5) { print (rnorm(i,10,10)) } #this generates data but does not print anything, unlike the above code. for (i in 1:5) { rnorm(i,10,10) }
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require(rgdal) require(readxl) require(dplyr) require(leaflet) require(htmltools) pittwards <- readOGR("https://services1.arcgis.com/vdNDkVykv9vEWFX4/arcgis/rest/services/VotingDistricts2017_May_v6/FeatureServer/0/query?where=Muni_War_1+LIKE+%27Pittsburgh%25%27&objectIds=&time=&geometry=&geometryType=esriGeometryEnvel...
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sigmoide <- function (alfa, beta, x){ z <- alfa + beta * x; e <- exp(z); return(e/(1+e)); }
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## lapply can be used on lists or vectors l <- list(a=51648794597,b=c("alpha","beta","gamma","delta","epsilon"),c="something else") lapply(l,class) ## -------------------- ## ## create a vector of random strings source("common.r") v <- make.string.v(10) ## unlist to make the returned list a vector vls <- unlist(la...
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# Make Messy Data --------------------------------------------------------- # Eugene Joh # 2019-05-21 # generate random data # - age # - name # - sex # - area # - hypothetical immune status # - hypothetical Ab serum concentration # install.packages("randomNames") library(randomNames) make_messy_data <- functio...
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set.seed(1) library(e1071) X = matrix(rnorm(200*2),ncol=2) X[1:100,]=X[1:100,]+2 X[101:150,]=X[101:150,]-2 Y = c(rep(1,150),rep(2,50)) plot(X,col=Y) data1=data.frame(X=X,Y=as.factor(Y)) train=sample(200,100) # lower cost # svmfit_r = svm(Y~.,data=data1[train,],kernel='radial',gamma=1,cost=1) summary(svmfit_r...
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lof_provider_stat_result <- read_rds("data/lof_provider_stat_result.rds") lof_provider_hcpcs_result <- read_rds("data/lof_provider_hcpcs_result.rds") lof_providermesh_stat_result <- read_rds("data/lof_providermesh_stat_result.rds") lof_providermesh_hcpcs_result <- read_rds("data/lof_providermesh_hcpcs_result.rds") lof_...
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runolr.Rd.R
library(lordif) ### Name: runolr ### Title: runs ordinal logistic regression models ### Aliases: runolr ### Keywords: ~kwd1 ~kwd2 ### ** Examples ## Not run: runolr(rv, ev, gr)
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famfit.Rd.R
library(FMAdist) ### Name: fmafit ### Title: Building frequentist model averaging input models ### Aliases: fmafit ### Keywords: ~kwd1 ~kwd2 ### ** Examples data<-rlnorm(500,meanlog=0,sdlog=0.25) Fset<-c('gamma','weibull','normal','ED') type<-'P' #by default type<-'Q' J<-5 #by default J<-10 myfit<-fmafit(data,Fset...
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#' Welch's two-sample t-test with summary statistics #' #' Welch's two-sample t-test for testing claims about the different between two population means without assuming the population variances are equal. #' #' @param xbar the sample mean of the first sample. #' @param ybar the sample mean of the second sample. #' @pa...
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# devtools::install_github("hadley/lineprof") # devtools::install_github("hadley/lineprof") library(lineprof) source("profiling-example.R") l <- lineprof(f()) l
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\name{Polygons-class} \docType{class} \alias{Polygons-class} \title{Class "Polygons"} \description{ Collection of objects of class \code{"Polygon"} } \section{Objects from the Class}{ Objects can be created by calls to the function \code{Polygons} } \section{Slots}{ \describe{ \item{\code{Polygons}:}{Object of c...
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library(shiny) library(tidyverse) library(dplyr, quietly = TRUE) library(gapminder) # Define server logic required to draw a histogram shinyServer(function(input, output) { output$regresionLinealGrafico <- renderPlot({ contaminante = "SO2" periodo_Regresion_Lineal<- input$Periodo...
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############### Need to calculate the area for occupied for all species ############### Annual area ############### Seasonal area rm(list = ls()) setwd("C:/Alison/Chapter 1/Analysis") # This is the species occurences for all species species_occ<-read.table("AllGridded_FDB_CPH_filtered.txt",sep = "\t", header=T) sp...
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#Analysis1 #buy low sell high #alpha beta #load packages library(tidyverse) library(tidyr) library(lubridate) library(data.table) library(janitor) library(readxl) library(writexl) library(xtable) library(nlme) Sys.setenv(TZ='UTC') ### Load data full_data <- fread("D:/Battery/Data/full_lmp.csv") %>% mutate(settlementd...
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#' Baseline signals #' @param el Tensor or ECoGTensor object #' @param from baseline start time #' @param to baseline end time #' @param method mean or median, default is mean #' @param unit "\%" percent signal change or "dB" decibel unit #' @param data_only return array or tensor object? #' @param hybrid if return ten...
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# Exploratory data # Preliminary analysis real work is supposed to be in main.R install.packages("corrplot") install.packages(ROCR) #Load librarys library(ggplot2) library(caret) library(corrplot) library(e1071) library(ROCR) #clear global environment rm(list = ls()) dataset <- read.csv("HR_comma_sep.csv") dataset$le...
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hpaBinary_generics.R
#' Predict method for hpaBinary #' @param object Object of class "hpaBinary" #' @template newdata_Template #' @param is_prob logical; if TRUE (default) then function returns #' predicted probabilities. Otherwise latent variable #' (single index) estimates will be returned. #' @template elipsis_Template #' @retu...
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gqc.Rd.R
library(grt) ### Name: gqc ### Title: General Quadratic Classifier ### Aliases: gqc print.gqc ### Keywords: multivariate ### ** Examples data(subjdemo_2d) fit.2dq <- gqc(response ~ x + y, data=subjdemo_2d, category=subjdemo_2d$category, zlimit=7)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/DIF.Logistic.MG.R \name{DIF.Logistic.MG} \alias{DIF.Logistic.MG} \title{Logistic regression DIF method for more than two groups} \usage{ DIF.Logistic.MG(data, group, sig.level, purify, output.filename) } \arguments{ \item{data}{numeric: eithe...
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#' User API #' #' All info related to the currently signed in user. #' #' @seealso \url{https://developer.wunderlist.com/documentation/endpoints/user} #' #' @param list_id List ID #' #' @export wndr_get_user <- function(list_id = NULL) { if(is.null(list_id)) { wndr_api(verb = "GET", path = "/api/v1/u...
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library(nlme) library(MASS) propose.glmm.random.mclapply <- function(param, da.mcmc, tau = 1){ f <- function(i.random){ ### Random walk. random.new <- param$random random.new[i.random] <- rnorm(1, mean = param$random[i.random], sd = tau * da.mcmc$sd.random) logL.new ...
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library(OasisR) ### Name: xPy ### Title: A function to compute interaction index (xPy) ### Aliases: xPy ### ** Examples x <- segdata@data[ ,1:2] xPy(x)
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## This code is used for creating the plot2 in the Course Project 1 for the Exploratoy ## Data Analysis curse from Coursera ## The downloaded file with the information has been manually cut with days 1st and 2nd ## Of Febrary 2007 in the local file "1st_2nd_Feb2007.txt" datafile <- "./data/1st_2nd_Feb2007.txt" data <...
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choropleths.R
library(geojson) # https://rstudio.github.io/leaflet/choropleths.html states <- geojson_read("us_states.json", what = "sp")
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\name{Guitar-package} \alias{Guitar-package} \alias{Guitar} \docType{package} \title{ Guitar } \description{ RNA Landmarks Guided Transcriptomic View of RNA-related Genomic Features. } \details{ The package is designed for transcriptomic visualization of RNA-related genomic features represented with genome-...
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#--- Day 5: Alchemical Reduction --- # You've managed to sneak in to the prototype suit # manufacturing lab. The Elves are making decent progress, # but are still struggling with the suit's size reduction # capabilities. # # While the very latest in 1518 alchemical technology # might have solved their problem eventuall...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/hint_main.R \name{print.hint.test} \alias{print.hint.test} \title{print.hint.test} \usage{ \method{print}{hint.test}(x, ...) } \arguments{ \item{x}{An object of class `hint.test`.} \item{...}{Additional arguments to be passed to `print`.} } ...
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#' Cost parameter for minority class #' #' Used in `bag_treer()`. #' #' @param range A two-element vector holding the _defaults_ for the smallest and #' largest possible values, respectively. #' #' @param trans A `trans` object from the `scales` package, such as #' `scales::log10_trans()` or `scales::reciprocal_trans()...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/year_oldest_function.R \name{year_oldest} \alias{year_oldest} \title{A Year Age Function} \usage{ year_oldest(year) } \arguments{ \item{year}{an individual year} } \value{ character } \description{ This function allows you to find the name of...
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library(RcmdrMisc) ### Name: discretePlot ### Title: Plot Distribution of Discrete Numeric Variable ### Aliases: discretePlot ### Keywords: hplot ### ** Examples if (require(datasets)){ data(mtcars) mtcars$cyl <- factor(mtcars$cyl) with(mtcars, { discretePlot(carb) discretePlot(carb, scale="percent") ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/convert_Q.R \name{convert_Q} \alias{convert_Q} \title{Convert between flow units typically seen in wastewater and streamflow calculations--cfs, acre-ft/d, mgd, lpm, cms} \usage{ convert_Q(x, from, to) } \arguments{ \item{x}{A vector of number...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sharedMetaData.R \name{addDemographicFields} \alias{addDemographicFields} \title{Add fields from demographic data to meta-data} \usage{ addDemographicFields(dt, demographicData) } \arguments{ \item{dt}{meta-data data.table} \item{demographic...
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#' @title Return a random GIF #' @description Returns a random GIF from Giphy, which may be limited using tags. #' @param tag a single, or multiple text strings. #' @param rating - A rating for age appropriate gifs. Options include \code{"y"}, \code{"g"}, \code{"pg"}, \code{"pg-13"} and \code{"r"}. #' @param sticker S...
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# From `dput(datos::frutas)` (245b4af) frutas <- c( "banana", "papaya", "uva", "ar\u00e1ndano", "frutilla", "mora", "pl\u00e1tano", "anan\u00e1", "pi\u00f1a", "manzana", "pera", "sand\u00eda", "melocot\u00f3n", "mel\u00f3n", "damasco", "durazno", "frambuesa", "mango", "guayaba", ...
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#other scripts source('project_functions.R') #new pipeline source('clean/read_data.R') source('clean/clean2.R') sdf = n_neighbours(osm_data$school,2000,'nschools_2000') newdata = merge(property_data,sdf,by='ID') newdata = merge(newdata,min_dist(osm_data$train,1,'traindist',1000),by='ID') newdata = merge(newdata,n_neig...
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# Day 9 - encryption library(tidyverse) ### Part 1 ### Example input <- read_lines(file = "data-naa/input9_test.txt") %>% as.numeric() valid <- map_lgl(6:length(input), ~ input[[.x]] %in% combn(input[(.x - 5):(.x - 1)], 2, FUN = sum)) input[6:20][!valid] ### Puzzle input <- read_lines(file = "data-naa/input9.tx...
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library(chemometrics) ### Name: prm ### Title: Robust PLS ### Aliases: prm ### Keywords: multivariate ### ** Examples data(PAC) res <- prm(PAC$X,PAC$y,a=5)
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setwd("/Users/Marie-Elyse/Downloads") NEW = read.csv("MAVAN_48M_and_up_jun2020_new.csv") #CALLED MEAN_CENTERED BUT ZSCORE NEW$mean_centered_ADHD = c(scale(NEW$ADHD)) NEW$mean_centered_PRS_0_001_adhd_child = c(scale(NEW$PRS_0_001_adhd_child)) NEW$mean_centered_auc_post_cesd = c(scale(NEW$auc_post_cesd)) NEW$mean_cente...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/deprivation_decile.R \name{deprivation_decile} \alias{deprivation_decile} \title{Deprivation deciles} \usage{ deprivation_decile(AreaTypeID = 102, Year = 2015) } \arguments{ \item{AreaTypeID}{Numeric value, limited to either 102 (counties and...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/model_refinement.R \name{restrict_coef} \alias{restrict_coef} \title{Restrict coefficients in the model} \usage{ restrict_coef(model, restrictions) } \arguments{ \item{model}{object of class glm/restricted} \item{restrictions}{data.frame wit...
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### This file is for running the BMA components of the analysis ## Written by MS Patterson (maspatte@uw.edu) and Karis Tenneson (krtenneson@fs.fed.us) # Last updated: Oct 20, 2017 ### Bring in data #setwd('C:\\Users\\krtenneson\\Desktop\\lidarPaper\\lidarNew\\scripts') #setwd('\\\\166.2.126.25\\rseat\\Programs\\Reimbu...
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#reading from local repository because of slow/unacessible internet setwd( "C:/Users/tata/WORK/Data") # use English (e.g. for week days) insted of Czech Sys.setlocale("LC_TIME","English") #install if necessary #install.packages("sqldf") library(sqldf) x <- read.csv.sql("household_power_consumption.txt", sep=";", s...
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# Setup file name variables folderName <- "UCI HAR DataSet" columnNamesFile <- paste(folderName,"/features.txt",sep = "") ## Test files testSub <- paste(folderName,"/test/subject_test.txt",sep = "") testY <- paste(folderName,"/test/y_test.txt",sep = "") testX <- paste(folderName,"/test/X_test.txt",sep = "") ## Training...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/04fileOperations.r \docType{methods} \name{dir.create.adf} \alias{dir.create.adf} \alias{dir.create.adf,amigaDisk,character,missing,missing-method} \alias{dir.create.adf,amigaDisk,character,POSIXt,missing-method} \alias{dir.create.adf,...
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context("Serializing S4 objects") test_that("Simple S4 serialization", { setClass("myClass", slots = list(name = "character")) obj <- new("myClass", name = "myName") out <- jsonlite::unserializeJSON(jsonlite::serializeJSON(obj)) expect_identical(obj, out) removeClass("myClass") }) test_that("Serialize optio...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sns_operations.R \name{sns_create_platform_application} \alias{sns_create_platform_application} \title{Creates a platform application object for one of the supported push notification services, such as APNS and FCM, to which devices and mobil...
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# Run on O2 library(DRIAD) library(tidyverse) library(here) library(batchtools) wd <- file.path("/n", "scratch3", "users", "c", "ch305", "driad") dir.create(wd) fnROSMAP <- wrangleROSMAP(tempdir()) # fnMSBB <- Sys.glob(here::here("data-raw", "msbb*.tsv.gz")) fnMSBB <- wrangleMSBB(tempdir()) prediction_tasks_all <- ...
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library(nycflights13) library(tidyverse ) flights_sml <- select(flights, year:day, ends_with("delay"), distance, air_time ) mutate(flights_sml, gain = dep_delay - arr_delay, hours = air_time / 60, # It's possible to refer to columns that are created in # the same call to mutate...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mybin.R \name{mybin} \alias{mybin} \title{Mybin} \usage{ mybin(iter = 100, n = 10, p = 0.5) } \arguments{ \item{iter}{the number of iterations} \item{n}{the number of Bernoulli trials} \item{p}{the probability of success in each trial} } \v...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/spectrum_objects.R \name{PawsGetSpectrumRequest} \alias{PawsGetSpectrumRequest} \title{PawsGetSpectrumRequest Object} \usage{ PawsGetSpectrumRequest(antenna = NULL, capabilities = NULL, deviceDesc = NULL, location = NULL, masterDeviceDesc =...
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library(clinDR) ### Name: emaxalt ### Title: Fit 4- or 3-parameter Emax model substituting simpler curves if ### convergence not achieved. ### Aliases: emaxalt ### Keywords: nonlinear ### ** Examples save.seed<-.Random.seed set.seed(12357) doselev<-c(0,5,25,50,100) n<-c(78,81,81,81,77) dose<-rep(doselev,n) ###...
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library(rtweet) library(tidyverse) library(lubridate) library(gganimate) # Extraer tweets de Carlos Oporto resultados = search_tweets( q = "Resultados AND Oficiales AND CNE AND carlosoporto", include_rts = F ) resultados_tidy = resultados %>% # Seleccionar columnas de interes select(created_at, text) %>% # ...
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# alpha diversity analysis library(amplicon) file.in <- '/home/drizzle_zhang/microbiome/result/4.Alpha_Diversity/alpha_index_table/alpha_estimator_summary.csv' mat.alpha <- read.table(file.in, sep = '\t', header = T, row.names = 1) type.dose <- c(0, 1, 2, 3) # meta file meta.file <- '/home/drizzle_zhang/microbiome/re...
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# Function to find data at exercise levels of interest # Given an input of percentage e.g. (.5 for 50%) of work-rate: # locate the equivalent exercise data at that percentage # average +/- span for key variables # Output: average W, VOK, HR, VE + standard deviations collectExeData <- function(argv){ # Percentage of m...
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setwd("G:/stock/data/shanghai_shenzhen_index") df1=read.csv("shanghai_index_1991-01-01_2017-11-21.csv") df1=df1[complete.cases(df1),] close1=df1[,5] vol=df1[,6] n1=which(vol>0&vol<10000000) df2=df1[n1,] year1=substr(df2[,1],1,4) month1=substr(df2[,1],6,7) n1=which(year1>=2012&year1<=2016) vol=df2[n1,6] close1=df...
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#!/usr/local/bin/Rscript library(magrittr) library(dplyr) #dfA <- read.csv('../analysis/csv/A.csv') load('../data/temp_rdata/dfA.rd') rownames(dfA) <- dfA[['entrezgene_id']] dfA %<>% dplyr::select(-entrezgene_id) dfA <- dfA - rowMeans(dfA) path_to_A_norm <- "../analysis/csv/A_norm.csv" write.table(dfA, file=path...
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library(data.table) #Load the file dt <- fread("household_power_consumption.txt", na.strings = "?") #Paste date and time and change char to date format dt1 <- dt[, DateTime := as.POSIXct(paste(Date, Time), format = "%d/%m/%Y %H:%M:%S")] #Extract the required dates dt1 <- dt[dt$DateTime >= "2007-02-01" & dt$...
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# # Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not us...
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library(e1071) library(ggplot2) n <- 5000 set.seed(10111) x <- matrix(rnorm(n*2), ncol = 2) x[1:round(n/3),] <- x[1:round(n/3),] + 2 x[(round(n/3)+1):(round(n/3)*2),2] <- x[(round(n/3)+1):(round(n/3)*2),2] - 2 x[(round(n/3)+1):(round(n/3)*2),1] <- x[(round(n/3)+1):(round(n/3)*2),1] + 2 y <- c(rep(1,round(n/3,)*2), rep...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/show_ex_toc.R \name{show_ex_toc} \alias{show_ex_toc} \title{Insert a table of content for the exercises at the end of a bookdown chapter} \usage{ show_ex_toc(header = "", clear.it = TRUE) } \arguments{ \item{header}{A Markdown text to place a...
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data <- read.csv("C:/Python27/Fall_Data11.csv",header = TRUE,sep = ",") View(data) ##data$majorinjury =ifelse(data$InJuryLevel_Key==3,1,0) str(data) summary(data) CTDF$random <- runif(nrow(CTDF), 0, 1); CTDF <- CTDF[order(CTDF$random),] CTDF.dev <- CTDF[which(CTDF$random <= 0.7),] CTDF.val <- CTDF[which(CTDF$random ...
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#' @useDynLib coop R_co_sparse co_sparse <- function(n, a, i, j, index, type, use, inverse) { check.is.flag(inverse) if (!is.double(a)) storage.mode(a) <- "double" if (!is.integer(i)) storage.mode(i) <- "integer" if (!is.integer(j)) storage.mode(j) <- "integer" use <- check_use(use) if (us...
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library(purrr) dormir_secs <- function(secs = 1L) { Sys.sleep(secs) return(sprintf('dormi %d segundo(s)', secs)) } # ------------------------------------------------------------------ ## Progress bar vetor <- rep(1, 4) prog <- dplyr::progress_estimated(length(vetor)) dormidas <- map(vetor, ~{ print(prog$tick(...
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# Intro #This is the replication script for 'archivist: An R Package for Managing, Recording and Restoring Data Analysis Results' (Przemyslaw Biecek, Marcin Kosinski) submitted to JSS. #First, make sure that `archivist` is installed. if (!require(archivist)) { install.packages("archivist") library(archivist) ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/LR.inference.R \name{LR.inference} \alias{LR.inference} \title{LR.inference} \usage{ LR.inference(W, A, Y, Qform, alpha = 0.05, simultaneous.inference = FALSE) } \arguments{ \item{W, }{matrix or data.frame of covariates} \item{A, }{a binary ...
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## These functions provide a way to create and cache an inverse of a matrix ## so that the inverse only has to be calculated once. Create a new matrix object ## by calling makeMatrix with the original matrix then call cacheSolve with the new ## matrix object to get the inverse ## makeCacheMatrix creates a matrix objec...
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require(ggplot2) require(maptools) require(plyr) require(raster) # raster <- raster('C:/Users/ben/Documents/Data/Output/Yuccabrevifolia/06-24.1705/maxent.1705.envi') # points <- read.csv('C:/Users/ben/Documents/Data/Output/Yuccabrevifolia/06-24.1705/presence.csv') # points <- points[, 2:3] # poly <- shapefile('C:/User...
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Assignment-11-Vizualization.R
###------------------ ###Visualization ###------------------ ###Students Name:Neha Lad ###GNumber:G01169261 rm(list=ls()) data <- read.csv(file.choose()) install.packages("ggplot2") library(ggplot2) #1. Create Histogram for Age using R (10 points) ggplot(data, aes(x=Age)) + geom_histogram(binwidth=1,color="darkblue...
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### # Playing with the data. Just some random hacks.. ### # Clear the workspace rm(list=ls()) source("common.R") data <- load_data() explain_variable(data$turbine$`Local wind power should be produced in Helsinki`) explain_variable(data$turbine$`I would like to buy local wind power in Helsinki, even if cheaper elec...
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testlist <- list(mu = 2.99205734114282e+21, var = 4.55931121056418e+169) result <- do.call(metafolio:::est_beta_params,testlist) str(result)
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source("util.R") theme_set(theme_light(20)) run_sim <- function(trans_file){ trans <- fread(trans_file) trans <- melt(trans, id =c("from_matched_field","to_matched_field")) full_trans <- rbindlist(apply(trans, 1,function(m){data.table(from_matched_field=rep(m[1],m[4]), ...
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# load libraries library(clustermq) library(suppoRt) # devtools::install_github("mhesselbarth/helpeR") library(landscapemetrics) library(raster) library(sp) library(tidyverse) source(paste0(getwd(), "/scripts/00_calculate_lsm_helper.R")) source(paste0(getwd(), "/scripts/00_clip_and_calc.R")) #### Load data #### # # ...
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heuristic_contention_model.R
# ---------------------------------------------------------------------------- # # Model 1: Contention_model # ---------------------------------------------------------------------------- # #' Contention model #' #' @description Solve the contention model. #' #' @param W_fix Work matrix. #' @param S_fix Start matrix. #...
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setwd(as.character("C:/Users/miffka/Documents/!DataMining/RAnalysis1")) getwd() library(psych) library(ggplot2) library(Hmisc) # свои функции my_calc <- function(x, y){ #задаем аргументы в скобках s <- x + y #задаем внутренние переменные и пишем тело return(s) #возвращаем результат } result <- my_ca...
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combine-recruit-data.R
# # # # pkgs library(tidyverse) # tidy code and data library(readxl) # reading in excel files library(openxlsx) # writing out excel file ## CHANGE ME date_of_extraction <- "2022-07-25" mkdir <- function(path) system(paste("mkdir -p", path)) mkdir(paste0("recruits-data/combined-data/", date_of_extraction)) mkdir(pas...
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big_main_simulation_additional.R
if (!require("remotes")){ install.packages("remotes") library(remotes) } if (!require(simcompl2)){ remotes::install_github("stijnmasschelein/simcompl2", ref = "only_files") library(simcompl2) } source("R/big_parameters.R") data_params_1 <- data_params data_params_1$b1 = list(c(.5, .5, ...
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table <- read.table("household_power_consumption.txt", header = TRUE, sep = ";", stringsAsFactors = FALSE) subsetdata <- table[table$Date %in% c("1/2/2007","2/2/2007"), ] subsetdata$Date <- as.Date(subsetdata$Date, format="%d/%m/%Y") # Date has to be used with time and hence combining date and time as one datetime <- ...
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Binom Max Lik.R
#Jan 22, 2018 #Maximum likelihood Binomial distrib #1) Generate binomial data n=1000 size=1 X1 <- runif(n, min=0, max=1) B0 <- 1 B1 <- 2 Y <- rbinom(n=n, size=size, prob=(exp(B0+B1*X1)/(1+(exp(B0+B1*X1))))) #not good Y2 <-rbinom(n=n, size=size, prob=(1/(1+exp(-(B0+B1*X1))))) Y3 <-rbinom(n=n, size=size, prob=(1/(1+exp(...
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# Perform all necessary initialization init <- function(){ library(shiny) # load Shiny Library data(mtcars) # load mtcars dataset set.seed(888) # set seed for reproducibility } regression <- function(){ mtcars$am[mtcars$am == 0] <- "Automatic" mtcars$am[mtcars$am ...