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library(tm) library(SnowballC) # creating dtm for cleanemail_corpus email_dtm <- DocumentTermMatrix(cleanemail_corpus) email_dtm
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## Time Series ARIMA and MSARIMA Models in R: Box Jenkin's Methodology rm(list=ls()) cat("\014") dev.off() install.packages("tseries") install.packages("forecast") install.packages("plm") install.packages("Formula") install.packages("tcltk") install.packages("uroot") install.packages("pdR") install.packages("stats") i...
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/*======================================================================================*/ /* File: AlertDlogUtils.r */ /* */ /* By: George Delaney */ /* Mac CPU Software Quality */ /* Date: 5/14/90 */ /* */ /* Con...
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x <- as.matrix(eurodist) countries <- c("Greece", "Spain", "Belgium", "France", "France", "Germany", "Denmark", "Switzerland", "Gibraltar", "Germany", "Holland", "Portugal", "France", "Spain", "France", "Italy", "Germany", "France", "Italy", "Sweden", "Austria") ...
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rm(list=ls()) library(lubridate) library(ggpubr) library(purrr) library(tidyverse) library(data.table) library(dplyr) library(ggplot2) options(digit=9) options(digits=9) source_path_1 = "/Users/hn/Documents/GitHub/Ag/Lagoon/core_lagoon.R" source_path_2 = "/Users/hn/Documents/GitHub/Ag/Lagoon/core_plot_lagoon.R" source...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/timer.R \name{tic} \alias{tic} \alias{toc} \title{Crude Timing} \usage{ tic(pos = 1, envir = as.environment(pos)) toc(pos = 1, envir = as.environment(pos)) } \arguments{ \item{pos}{Where to do the assignment. By default, assigns into the glo...
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### E[ Y x W ] and COV(Y,W), W=log(Y+1) cov_yw <- function(lambda,delta,N=100){ c0 <- function(lambda, delta, N){ B = 0 j=1 B[j] = lambda * 2^delta * log(2) eps = sqrt(.Machine$double.eps) while(B[j] > eps){ B[j+1] = (lambda/j) * (log(j+2)/log(j+1)) * ((j+2)/(j+1))^delta * B[j] j=j+1 ...
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#Cleans everything (any previously datasets, functions created,..) rm(list = ls()) pkgs <- c('lubridate', "rvest", "readr","sjmisc","dplyr","stringr","qdapRegex","gsubfn","tidyverse", "httr", "jsonlite","readxl","yesno") for (i in pkgs) { if (!i %in% installed.packages()) { install.packages(i) } li...
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#-------------------------- # This script produces play-by-play data for a particular year and team. Later we want it to ingest data for # all teams and all years iteratively. # Download this folder: https://www.retrosheet.org/events/2017eve.zip # in command prompt, navigate to 2017eve folder you downloaded using "cd"...
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skip_if_not_installed("cli") cli::test_that_cli(configs = c("plain", "ansi"), "can style strings with cli", { expect_snapshot({ style_emph("foo") style_strong("foo") style_code("foo") style_q("foo") style_pkg("foo") style_fn("foo") style_arg("foo") style_kbd("foo") style_key("foo"...
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#' \code{streetview} package #' #' panoids #' #' See the README on #' #' @docType package #' @name streetview NULL ## quiets concerns of R CMD check re: the .'s that appear in pipelines if(getRversion() >= "2.15.1") utils::globalVariables(c(".")) #' @title get_panoids #' #' @description Retrieve list of panoids an...
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library(event) ### Name: hgextval ### Title: Log Hazard Function for an Extreme Value Process ### Aliases: hgextval ### Keywords: distribution ### ** Examples hgextval(1, 2, 1, 2)
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rm(list=ls()) setwd('C:/Local Data/') X = read.csv('C:/Local Data/Code/CB_Date_Range.csv') Date = strptime(X[,1],'%Y-%m-%d') CURRENT = as.POSIXlt(Date) CURRENT.YMD = format(CURRENT,'%Y%m%d') #--------------------------------- #--- Define Area of Interest ----- #--------------------------------- ### 2...
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##adjust p values for multiple comparisons mainpath=getwd() filepath=paste(getwd(),'/static/OUT',sep='') setwd(filepath) mainpath=filepath csvfiles <- list.files(path=mainpath, pattern="output.csv") cancerlist=c() for (singlecsv in csvfiles) { fullfilename <-paste(mainpath,"/",singlecsv,sep="") generesult <- read.csv...
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## Put comments here that give an overall description of what your ## functions do ## makeCacheMatrix takes a matrix as argument and has the following functions, ## get(): return the matrix ## set(): reset the matrix and nullify the previously cached inverse ## getInverse(): return the inverse of the matrix ## setInve...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Connection.R \docType{data} \name{SUPPORTED_CONNECTION_ATTRIBUTES} \alias{SUPPORTED_CONNECTION_ATTRIBUTES} \alias{ConnectionAttributes} \title{Supported Connection Attributes} \description{ These (pre) connection attributes are supported and ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/geom_rocci.R \docType{data} \name{geom_rocci} \alias{geom_rocci} \alias{GeomRocci} \title{Confidence regions for the ROC curve} \format{ An object of class \code{GeomRocci} (inherits from \code{Geom}, \code{ggproto}, \code{gg}) of length 6. }...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/balance_errors.R \name{balance_errors} \alias{balance_errors} \title{Balance Alpha and Beta Error} \usage{ balance_errors(sesoi, n, one_tailed) } \description{ Find alpha-value for which 1-power and alpha are balanced. }
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Exercise11 - [unsupervised learning] - K mean clustering.R
#################################################### #### Unsupervised Learning - K Means Clustering #### #################################################### # Methodology: # K Means Clustering is an unsupervised learning algorithm that tries to cluster data based on their similarity. # Unsupervised learning means ...
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## ---- message=TRUE, warning=TRUE----------------------------------------- library(brapi) library(magrittr) white_list <- ba_db() # print names of databases from whitelist white_list sp_base <- ba_db()$sweetpotatobase # print summary of sp_base object sp_base ## -------------------------------------------------...
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library(tidyverse) ################################################################ # Read Data input.prod <- read_file("../data/day04/prod.txt") input.test <- read_file("../data/day04/dev.txt") input <- input.prod input <- input.test # Transform Data df <- strsplit(input, "\n\n")[[1]] %>% as_tibble() %>% dplyr...
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getwd() library(lpSolveAPI) lprec<-make.lp(0,8) lp.control(lprec,sense='min') #objective function set.objfn(lprec,c(622,614,630,0,641,645,649,0)) #constraints add.constraint(lprec,rep(1,4),"=",100,indices =c(1,2,3,4)) add.constraint(lprec,rep(1,4),"=",120,indices =c(5,6,7,8)) add.constraint(lprec,rep(1,2),"=",80,indice...
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library(distrMod) ### Name: fiHampel ### Title: Generating function for fiHampel-class ### Aliases: fiHampel ### Keywords: robust ### ** Examples fiHampel() ## The function is currently defined as function(bound = Inf){ new("fiHampel", bound = bound) }
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#' Build a topographic rasters stack (elevation, slope, aspect) #' #' This function builds a topographic rasters stack for Belgium (elevation, slope, aspect). The rasters are projected in the #' 3812 EPSG code. No input parameters are required. #' @author Thomas Goossens - pokyah.github.io #' @return A stack of topogra...
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library(dplyr) library(purrr) library(tidyr) library(lubridate) library(plyr) library(bit64) library(data.table) library(matrixStats) ####################### JOINING ALL BETWEENNESS RESULTS ########################### path <- "c:/Users/migue/Documents/results/betweenness/" allFiles <- list.files(path = ...
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#setwd("G:\\MPI\\__trajtypes_paper_2015\\RawData") #data <- readRDS("koop_processed.RDS") #library(ggplot2) ## input: # data matrix with MAD column labeled "MAD" # number of clusters: nclust # vector of column names of variables used for clustering ## output: # data matrix with one additional column = cluster-member...
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monthly_plot <- function(data) { data <- data.table::data.table(data) gdat <- data gdat$x <- lubridate::day(gdat$start) gdat$y <- -as.numeric(gdat$id) gdat$base_hour <- gdat$base_hour_day + gdat$base_hour_night gdat$y <- ifelse(gdat$base_hour <= 0, NA, gdat$y) ydat <- unique(gdat[!is.na(y), .(y, 이름)...
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size_mod <- -5 my_theme <- theme(plot.background=element_rect(fill = "transparent", colour = "transparent"), panel.grid.major = element_line(colour="grey", linetype = "dashed", size = 0.5), panel.grid.major = element_line(colour="lightg...
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sparseWtime<-function(g.s,tm){ W.base = sparseW(g.s) W.time = Matrix(matrix(0,g.s*g.s*tm,g.s*g.s*tm),sparse = TRUE) for(i in 1:tm){ W.time[((i-1)*g.s*g.s+1):(i*g.s*g.s),((i-1)*g.s*g.s+1):(i*g.s*g.s)] = W.base } for(i in 1:(g.s^2)){ W.time[i,(i+g.s^2)] = 1 } for(i in (g.s^2 +1):((tm-1)...
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library(MASS) data("Boston") ?Boston head(Boston) summary(Boston) str(Boston) Boston$chas=as.factor(Boston$chas) Boston$rad=as.factor(Boston$rad) hist(Boston$medv) hist(sqrt(Boston$medv)) Boston$medv_sqrt=sqrt(Boston$medv) ## simpletest linear regression plot(Boston$lstat,Boston$medv) cor(Boston$lstat,Boston$m...
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# Read data to powerDT powerDT <- data.table::fread(input = "household_power_consumption.txt", na.strings="?") # Adjust date format powerDT[, Date := lapply(.SD, as.Date, "%d/%m/%Y"), .SDcols = c("Date")] # Restrict to period of 2007-02-01 and 2007-02-02 powerDT <- powerDT[(Date >= "2007-02-01") & (Date <= "2007-02-0...
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############################################################################################# ###--- Setup Environment -------------------------------------------------------------------# ############################################### # # require libs for setup #EEE...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PEPATACr.R \name{narrowPeakToBigBed} \alias{narrowPeakToBigBed} \title{Convert a narrowPeak file to a bigBED format file.} \usage{ narrowPeakToBigBed( input = input, chr_sizes = chr_sizes, ucsc_tool = ucsc_tool, keep = FALSE ) } \argu...
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#Question - 2 twitter <- readLines(con <- file("en_US.twitter.txt"), encoding = "UTF-8", skipNul = TRUE) length(twitter) #Question 3 #What is the length of the longest line seen in any of the three en_US data sets? # Blogs file blogs<-file("en_US.blogs.txt","r") blogs_lines<-readLines(blogs) close(blogs) summary(nc...
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download_Prelictum_GOterms.R
#### Download GO terms for P. relictum from PlasmoDB website #### Vincenzo A. Ellis #### 25 September 2018 prel_go <- function(){ gaf.colnames <- c("DB", "DB Object ID", "DB Object Symbol", "Qualifier", "GO_ID", "DB_Reference", "Evidence_Code", "With_or_From", "Aspect", "DB_Object_Name", ...
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library(dplyr) library(manipulate) library(ggplot2) library(moments) getwd() setwd("C:/sovi/Data Science/Stats/week3/assignment") covidFile <- read.csv("COVID19.csv", na.strings = c("", "NA"), stringsAsFactors = FALSE) str(covidFile) head(covidFile,10) colSums(is.na(covid...
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insurance <-read.csv("insurance.csv", stringsAsFactors = TRUE) #variaveis vão impactar no valor das despesas medicas str(insurance) #ver o minimo e o máximo; summary(insurance$expenses) #ver o histograma, nota-se que quanto maior os gastos, menos pessoas estão nesses dados hist(insurance$expenses) table(insurance$...
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## Together, these two functions find the ## inverse of a matrix and caches the result. ## makeCacheMatrix takes an matrix and returns a list of functions to set or get ## the matrix and its inverse. makeCacheMatrix <- function(x = matrix()) { inverse <- NULL set <- function(y) { x <<- y inver...
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library(NlsyLinks) ### Name: ExtraOutcomes79 ### Title: Extra outcome variables in the NLSY79 ### Aliases: ExtraOutcomes79 ### Keywords: datasets ### ** Examples library(NlsyLinks) #Load the package into the current R session. gen2Outcomes <- subset(ExtraOutcomes79, Generation==2) #Create a dataset of only Gen2 sub...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/add.R \name{add_column} \alias{add_column} \title{Add columns to a data frame} \usage{ add_column(.data, ..., .before = NULL, .after = NULL) } \arguments{ \item{.data}{Data frame to append to.} \item{...}{Name-value pairs, passed on to \code...
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library(shiny) shinyUI(pageWithSidebar( headerPanel("CRM Analytics Single Purchaser Dashboard"), sidebarPanel( sliderInput('mu', 'Guess at the mu',value = 70, min = 0, max = 500, step = 10,) ), mainPanel( plotOutput('myHist') ) ))
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# contributed by Wes Crouse and Adelaide Tovar source("0_functions.R") setwd("../data") ############################## #### Phenotype Data Input #### ############################## raw_data <- read.xlsx('raw_data.xlsx', sheet = 2, startRow = 2) raw_data[,c(2:4)] <- sapply(raw_data[,c(2:4)], as.factor) raw_data$stra...
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## creates 4 plots #read file setwd("C:/Users/Debra/datasciencecoursera/explorProject1") fileLoc <- "C:/Users/Debra/datasciencecoursera/explorProject1/household_power_consumption.txt" data <- read.table(fileLoc,header = TRUE,sep = ";") #rename columns names(data) <- c("date","time","globalactivepower","globalreactive...
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convertAlnRows <- function(rows, type) { version <- rows[1] if (length(rows) < 3 || ##!identical(grep("^CLUSTAL", rows[1L]), 1L) || !identical(sub("^\\s+$", "", rows[2:3]), c("", ""))) stop("There is an invalid aln file!") rows <- tail(rows, -3) rows <- sub("^(\\S+\\s+\\S+)\\s*...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sle.R \name{sle} \alias{sle} \title{Stochastic Loewner Evolution} \usage{ sle(kappa = 4, tmax = 1, a = 1, kappaL = 0, nsteps = 2000, p_timescaling = 0.5, verbose = TRUE, forcing = NULL) } \arguments{ \item{kappa}{strength of the 1d Brownian...
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# QC for fixed effect MA implemented by METAL, setwd("/SAN/ugi/mdd/trans_ethnic_ma/results/") library(data.table) df <- fread("METAANALYSIS_HIS_1.tbl") # Read 1000G all bim files and create a FileName column to store filenames list_of_files <- list.files(path = "/SAN/ugi/ukhls/1000G/1KGP3_bim", recursive = TRUE, ...
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# Clear workspace # ------------------------------------------------------------------------------ rm(list = ls()) # Load libraries # ------------------------------------------------------------------------------ library("tidyverse") library("caret") library("UniprotR") library("ANN2") library("yardstick") # Define...
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# Isabel Winney # 2016-10-20 # Results concatenator # Apparently adding continuously to a results file is # a hard task in imageJ/Fiji. This script is to take the # .txt files produced by imagej and turn them in to a single file. resultsConcatenator <- function(filepath, output){ # INPUT filepat...
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#!/usr/bin/env Rscript #### Description #### # Counts combinations of regions identified per zmw. Outputs a csv of format RegionCombo, count # Goal: determine where Adapter, 3' barcode, 5' barcode, and their reverse complements # lie within a given CCS # The pipe taken from script by Colin Dewey #### load packages and...
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# Sample Code for Machine Learning Course @ Coursera setwd("~/GitHub/coursera/MachineLearning") library(caret) library(kernlab) library(e1071) data("spam") # Subsetting the data set for Trainig and Testing inTrain <- createDataPartition(y=spam$type, p=0.75, list = FALSE) training <- spam[inTrain, ] testing <- spam[-i...
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rm(list=ls()) library(ggplot2) source("~/helpers.R") fnames=dir() for (fname in fnames){ if (endsWith(fname,'.tsv')){ print(fname) data=read.table(fname,header=TRUE,sep='\t') data$Date=as.Date(data$Date) data=data[order(data$Date),] p1=ggplot(data=data, aes(x=data$Date, y=data$Uploads))+ ge...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/continuous_SuperLearner_regression.R \name{continuous.SuperLearner} \alias{continuous.SuperLearner} \title{Function to generate imputations using regression and SuperLearner for data with a continuous outcome} \usage{ continuous.SuperLearner(...
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bootSPIn <- function(x, n.boot=50, conf = 0.95, bw = 0, lb = -Inf, ub = Inf, l=NA, u=NA){ n.sims <- length(x) x <- sort(x) gaps <- x[2:n.sims] - x[1:(n.sims-1)] gaps <- c (gaps[1], gaps, gaps[n.sims-1]) gap.bandwidth <- 2 mean.gap <- rep (NA, n.sims) for (j in 1:n.sims){ mean.gap[j] <- mean (gaps[max (1, j-(ga...
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subroutine getpt(ichk,x,y,xmin,ymin) implicit integer*4 (i-n) #ccc version date: 06/01/83 #ccc author(s): Roger Clark & Jeff Hoover #ccc language: Ratfor #ccc #ccc short description: #ccc This subroutine #ccc algorithm description: none #ccc system requirements: none #ccc subroutines call...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/feedback.R \name{piat.feedback.simple_score} \alias{piat.feedback.simple_score} \title{PIAT feedback (simple score)} \usage{ piat.feedback.simple_score(dict = piat::piat_dict) } \arguments{ \item{dict}{The psychTestR dictionary used for inter...
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\name{blackgrass} \alias{blackgrass} \docType{data} \title{Seedling Emergence of Blackgrass (Alopecurus myosuroides)} \description{Seedling emergence of herbicide susceptible (S) and resistant (R) Alopecurus myosuroides in reponse to sowing depth and suboptimal temperature regimes (10/5C) and optimal temperature regim...
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library(tidyverse) library(DESeq2) GetStats <- function(RPKM){ RPKM <- RPKM %>% column_to_rownames("ensemblID") WT <- select(RPKM, contains("WT")) WT$WTMean <- rowMeans(WT) WT <- WT %>% rownames_to_column("ensemblID") HOM <- select(RPKM, -contains("WT")) HOM$HOMMean <- rowMeans(HOM) HOM <- HOM %>...
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subData$Time <- strptime(paste(subData$Date, subData$Time), format = '%d/%m/%Y %H:%M:%S') png(filename = "plot2.png", width = 480) with(subData, plot(Time, Global_active_power, type = 'l', xlab = "", ylab = "Global Active Power (kilowatts)")) dev.off()
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library(rminer) ### Name: imputation ### Title: Missing data imputation (e.g. substitution by value or hotdeck ### method). ### Aliases: imputation ### Keywords: manip ### ** Examples d=matrix(ncol=5,nrow=5) d[1,]=c(5,4,3,2,1) d[2,]=c(4,3,4,3,4) d[3,]=c(1,1,1,1,1) d[4,]=c(4,NA,3,4,4) d[5,]=c(5,NA,NA,2,1) d=data.f...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/accessors.R \name{get_dates} \alias{get_dates} \alias{get_dates.projections} \title{Access content projections objects} \usage{ \method{get_dates}{projections}(x, ...) } \arguments{ \item{x}{A \code{projections} object.} \item{...}{Further a...
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# First Shiny App # Katy Yut # Feb 22, 2021 # Load necessary packages library(shiny) library(shinydashboard) library(ggplot2) library(dplyr) library(latex2exp) library(rootSolve) # Read in data # data <- read.csv("/Users/Katy/Desktop/07_school/MATH5793/06_data/fourmeasure.csv", header=TRUE) data("T4.3") data <- T4.3 ...
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# LOESS Example 1: data(economics, package="ggplot2") # load data economics$index <- 1:nrow(economics) # create index variable economics <- economics[1:80, ] # retail 80rows for better graphical understanding loessMod10 <- loess(uempmed ~ index, data=economics, span=0.10) # 10% smoothing span loessMod25 <- loess(uempme...
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wlogr2<-function(y,d,z,wty=1) { n<-length(y) ay<-rank(y,ties.method="min") da<-cbind(ay,d,z) db<-da[order(ay,d,z),] stat<-0.0 vstat<-1.0 abc2<-.Fortran("logrank2",as.integer(n),as.integer(db[,1]),as.integer(db[,2]),as.integer(db[,3]),as.integer(wty),stat=as.double(stat),vstat=as.double(vsta...
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ui <- dashboardPage( dashboardHeader(title = 'DAoC'), dashboardSidebar( sidebarMenu( menuItem("Herald", tabName = 'herald', icon = icon("broom")), menuItem("Castspeed/buff", tabName = "castspeed", icon = icon("dashboard")), menuIt...
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# Generate template for sample upload --- # - Get the column names from the col_types object # - When the user uploads some new data, check the types against the col_types buildSampleTemplate <- function(file, rds_coltypes) { col_spec <- readr::read_rds(rds_coltypes) write( x = paste(names(col_spec$cols...
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LinearRegression_Rcode.R
setwd("E:\\Nitin") ## Rcode library(moments) library(ggplot2) library(GGally) library(MASS) library(car) carmileage <- read.csv("carMPG.csv" ) # Checking data redundancy using de duplication sum( duplicated( carmileage[,] )) # Data prepration # Converting all car names to lower case carmileag...
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inputs.R
forecasted_product_number = 2 filter_last_n_days = as.numeric(as.Date(Sys.time()) - as.Date('2020-03-13')) test_period = 2 parallel_processing_on = TRUE
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\name{Plot.vars} \alias{Plot.vars} \title{Plotting functions (eawagSummerSchoolTools)} \description{ Function to plot several sets of results. } \usage{ Plot.vars(vars,L,ncol=NA,mar=NA,ylim=list(),markers=F,headers=list(), xlab="",ylab="",pos="topright") } \arguments{ \item{vars}{matrix...
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summary.mars.R
summary.mars <- function(object) { xn <- object$x_names bn <- names(object$coefficients) ss <- object$splits cat("Basis functions:\nB0:\n Intercept\n") for(i in 2:length(ss)) { cat(paste0(bn[i],":\n")) for(j in 2:nrow(ss[[i]])) { cat(paste0(" Component ",j-1,": variable ",xn[ss[[i]][j,"v"]],"...
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CO2_extract_graph.R
# Extract graph from Peters 2017 - Fig 2 library(digitize) file.name = 'Peters2017_Fig2_edited.png' #--------------------------------------------------------------------- # Past time series cal = ReadAndCal(file.name) series1 = DigitData(col = 'red') series2 = DigitData(col = 'blue') series1.cal = Calibrate(series1, ...
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cx2scratch2.2.R
setwd("~/Dropbox/Work and research/Port Authority/cx2") library(dplyr) library(ggplot2) library(beepr) library(tidyr) library(tidyverse) library(tree) library(randomForest) library(rpart) library(rpart.plot) library(rsample) library(caret) rm(list = ls()) # clear global environment cat("\014") # clear the...
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get_data.R
# Functions to load Stack Exchange data. library(readr) library(tibble) #' @export get_stack_exchange_data <- function() { as_tibble(list(x = "not", y = "implemented", z = "yet")) } download_data <- function() { # temp <- tempfile() # download.file("https://archive.org/download/stackexchange/stackoverflow.com-...
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titanic_test_v2.R
library(tidyverse) library(magrittr) library(data.table) library(MLmetrics) library(stringr) library(glmnet) # tratando a base ------------------------------------------------------------------- train <- fread("../train.csv") test <- fread("../test.csv") test <- test %>% mutate(Survived = 0, Embarked = fa...
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table_to_maf.R
library(data.table) library(tidyverse) table_to_maf = function(tmp.table,sample.table){ # tmp.table = fillouts.dt # sample.table = sample.sheet # tmp.table = ret.006.table # sample.table = ret.006.sample.sheet # extract information for plasma and tumor tmp.table = data.table(tmp.table) lapply(sample.tabl...
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aoptgdtd.Rd.R
library(Aoptbdtvc) ### Name: aoptgdtd ### Title: A-optimal group divisible treatment designs ### Aliases: aoptgdtd ### Keywords: group divisible treatment design A-optimal ### ** Examples ## construct an A-optimal GDT design with 12 (= 4 x 3) test treatments ##in 12 blocks each of size 6 aoptgdtd(m=4,n=3,b=12,k=6)...
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runmodelscript.R
#This is a run file file the tree physiology model require(deSolve) #load relevant packages and function files require(rootSolve) require(gdata) source("R/treephys_ODEs.r") source("R/weibullcurves.R") source("R/modelplots.R") source("R/parameterfile.R") ...
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require(phyloseq) ###Import BIOM table data### OTUS_16S<-import_biom(BIOMfilename = 'Y:/VPino_hpc/ubuntu_qiime/16SvpNS_output/Diversity/7otus_16SvpNS/json_biom.biom', treefilename ='Y:/VPino_hpc/ubuntu_qiime/16SvpNS_output/Diversity/7otus_16SvpNS/rep_set.tre', # ...
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gDist.Rd.R
library(gPCA) ### Name: gDist ### Title: Density/Distribution Plot for gPCA ### Aliases: gDist ### Keywords: ~kwd1 ~kwd2 ### ** Examples # gDist(out)
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# loading the libraries library(tidyverse) library(gt) library(showtext) library(extrafont) library(extrafontdb) library(webshot) ### loading and organising the data # uploading cat density postcode_c <- read_csv("APHA0372-Cat_Density_Postcode_District.csv") # uploading dog density postcode_d <- read...
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context("ICTpower") library(PersonAlyticsPower) test_that("piecewise", { myPolyICT <- polyICT$new( groups = c(group1=10, group2=10) , phases = makePhase() , propErrVar = c(randFx=.5, res=.25, mserr=.25) , randFxOrder = 1 ...
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#' Normalised Biomass Size Spectrum #' #' @param x vector of biomasses, biovolumes, or lengths. #' @param w vector of weights, typically concentrations associated with individual measurements in `x`. #' @param type whether to compute a biomass/biovolume or abundance spectrum. #' @param base base of the logarithm for th...
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##Process the data ##I have created a tiny data file with the data of the selected days, to avoid the use of a txt file of 100MB project<-read.csv("Dataproject.txt", sep=";", stringsAsFactor=FALSE) ## Read the Tiny Data, avoid columns as class Factor project$Time<-paste(project$Date, project$Time, sep=" ") ## Merge...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cuda.R \name{cuda_get_device_capability} \alias{cuda_get_device_capability} \title{Returns the major and minor CUDA capability of \code{device}} \usage{ cuda_get_device_capability(device = cuda_current_device()) } \arguments{ \item{device}{In...
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inf_prj.R
## Distribution of 40 random exponentials (with rate = 2) set.seed(2) # This line is intended to perform a reproducible simulation. ss40 <- rexp(n = 40, rate = 0.2) hist(ss40) mean(ss40) var(ss40) ## Sample mean vs. Theoretical mean n <- 1000 set.seed(3) means <- cumsum(rexp(n, rate = 0.2))/(1:n) plot(means ~ c(1:n),...
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guhjy/BLasso
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BLasso_DL_Joo.R
#' Bayesian Lasso by Variational Bayes + Dirichlet-Laplace Priors #' #' @description Extended Bayesian Lasso (Park \& Casella (2008)) with Dirichlet-Laplace Priors (Bhattacharya et al. 2015) #' #' @references Bhattacharya, Anirban, et al. "Dirichlet–Laplace priors for optimal shrinkage." Journal of the American Statist...
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jamesjcai/My_Code_Collection
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require(Seurat) require(Matrix)
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Jegomezre/EstadisticaII
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Solucion.R
library(tidyverse) #cargando el tidyverse #Leyendo la base de datos #Ejercicio 1 datos <- read.csv("Ecommerce_Customers.csv") str(datos) #esto nos muestra la estructura de la base de datos datos.modelo <- datos %>% select(Avg..Session.Length:Length.of.Membership, Yearly.Amount.Spent) #Ejercicio 2 plot(datos.modelo...
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trinker/shinyTurkTools
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shinyTurkTools-package.R
#' Tools to accompany the shinyTurk. #' #' Tools to accompany the shinyTurk.. #' @docType package #' @name shinyTurkTools #' @aliases shinyTurkTools package-shinyTurkTools NULL
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l0o0/woe
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iv.replace.woe.Rd
\name{iv.replace.woe} \alias{iv.replace.woe} \title{Replace raw variables with Weight of Evidence} \usage{ iv.replace.woe(df, iv, verbose = FALSE) } \arguments{ \item{df}{data frame with original data} \item{iv}{list of information values for variables - output from \code{\link{iv.mult}} with \code{summary=F...
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cran/psyverse
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dct_object.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dct_object.R \name{dct_object} \alias{dct_object} \title{Create a DCT object} \usage{ dct_object( version = as.character(utils::packageVersion("psyverse")), id = NULL, prefix = paste(sample(letters, 4), collapse = ""), label...
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LukaSlov/ExData_Plotting1
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plot1.R
install.packages('sqldf') library(sqldf) #Separator is ';' data <- read.csv.sql('household_power_consumption.txt', sql="select * from file where Date = '1/2/2007' or Date='2/2/2007'", sep=';') #Use datetime format time <- paste(data$Date, data$Time) data$Time <- strptime(time, "%d/%m/%Y %H:%M:%S") #check if loaded d...
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ingted/R-Examples
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Edweibull<-function (q, beta, eps = 1e-04, nmax = 1000, zero = FALSE) { if (beta == 1 & !zero) e <- 1/(1 - q) else if (beta == 1 & zero) e <- q/(1 - q) else { xmax <- min(2 * qdweibull(1 - eps, q, beta, zero), nmax) if(xmax < nmax) { x <- 1:xmax e<...
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jerry-ban/coursera_rexploratory
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2021-05-09T09:33:51.965499
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plot2.R
getwd() setwd("C:/_research/homeworks/hw001/ExData_Plotting1") raw_data <- read.table("./household_power_consumption.txt", header = TRUE, sep = ";", stringsAsFactors = FALSE) col_names <-names(raw_data) raw_data$Timestamp = strptime(paste(raw_data$Date, raw_data$Time), "%d/%m/%Y %H:%M:%S") raw_data["Date"]=as.Date(raw...
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load.images.Rd
\name{load.images} \alias{load.images} \alias{load.pgm} \title{Read images} \description{ Loads image files in jpeg, tiff or raw format. \code{load.pgm} provides legacy support for reading files in pgm format. } \usage{ load.images(files, channels=c(1,0,0), scale=1, FLIP=FALSE) load.pgm(files, imdiff=NULL) } \arg...
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armstrtw/deathstar.core
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deathstar.worker
#!/usr/bin/env Rscript library(rzmq) worker.id <- paste(Sys.info()["nodename"],Sys.getpid(),sep=":") cmd.args <- commandArgs(trailingOnly=TRUE) print(cmd.args) work.endpoint <- cmd.args[1] ready.endpoint <- cmd.args[2] log.file <- cmd.args[3] sink(log.file) context = init.context() ready.socket = init.socket(co...
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filippomiramonti/developingDataProducts
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2022-12-05T04:00:10.743697
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ui.R
# # This is the user-interface definition of a Shiny web application. You can # run the application by clicking 'Run App' above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) shinyUI(fluidPage( tags$style(HTML(".js-irs-0 .irs-single, ....