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library(MASS) library(Matching) library(tidyr) library(readr) library(effsize) library(dplyr) ###Loading Data alldata<-read.csv("OlfactionFromStata_2017_06-19.csv") %>% group_by(group) %>% arrange(group,bblid) View(alldata) str(alldata) colnames(alldata) #Cleaning up variables alldata$anyspectrum<-as.factor(alld...
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setwd("C:/Users/kefisher/Box Sync/Publications/Monarch Larval Biomass Consumption - GH 2017 & 2018/Analysis_022019") ##Leaves in first 24 hours firstobs<-read.csv("012119_GH2018_FirstObservations_ForAnalysis.csv") head(firstobs) #average by number of plants library(plyr) ddply(firstobs,~NumPlants,summarise,...
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pacman::p_load(stringr, ggplot2, car, effects, lme4, lmerTest, dplyr, reshape2, tidyr, sjPlot, nlme) reimbursement = read.csv("Data/Hospital_Revised_Flatfiles/Payment and Value of Care - Hospital.csv") %>% select(Hospital.Name = Hospital.name, State, Payment.measure.name, Payment.measure.ID, Payment) reimbursemen...
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library(readxl) library(fitdistrplus) library(zoib) library(gamlss) Mosquito_Transmission <- read_excel("~/Malaria Data Files/Mosquito_Transmission.xlsx") MT_Days <- read_excel("~/Malaria Data Files/MT_Days.xlsx") Gt_Col <- read_excel("~/Malaria Data Files/Gt_Col.xlsx") #MT_GT_NP <- read_excel("~/Malaria Data Files/MT...
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# George Garcia | 11.16.19 # # "assignment4.r": Collects Reddit forum posts from the 'WallStreetBets' community to create # user network graphs with 'dplyr' and identify entities such as persons, organizations, # locations, dates, monies, and percentages with 'openNLP'. # To prevent java.lang.OutOfMemoryError, set...
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## ## Process Content Mine output XML files into node/edge lists that can be visualised in network graphs. ## ## This file contains the main input, processing and output functions. ## ## By: Matthew Gwynfryn Thomas ## ## {------- email --------} ## {-- twitter --} ## mgt@matthewgthomas.co.uk ## ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/basim_simu.R \name{baSimuError} \alias{baSimuError} \title{Simulate random error} \usage{ baSimuError( n, error.type = c("normal", "skewed"), sig = 1, mu = 0, skew.mu = NULL, skew.phi = NULL, skew.noise = 0.001 ) } \arguments{ \...
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#### Functions by Kayvan Sadeghi 2011-2012 ## May 2012 Changed the return values of some functions to TRUE FALSE require(graph) require(igraph) ###################################################################### ###################################################################### rem<-function(a,r){ # this is set...
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\name{genIndex} \alias{genIndex} \alias{genIndex,genambig-method} \alias{genIndex,array-method} \title{ Find All Unique Genotypes for a Locus } \description{ This function will return all unique genotypes for a given locus (ignoring allele order, but taking copy number into account) and return those genotypes as well ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/forecast_methods.R \name{forecast_NWP} \alias{forecast_NWP} \title{Do raw numerical weather prediction ensemble forecast} \usage{ forecast_NWP(nwp, percentiles, sun_up) } \arguments{ \item{nwp}{A [day x issue time x lead time x member] matrix...
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github_GET <- function(path, ..., pat = github_pat()) { url <- paste0("https://api.github.com/", path) tmp <- tempfile() download(tmp, url, auth_token = pat) fromJSONFile(tmp) } github_commit <- function(username, repo, ref = "master") { url <- file.path("https://api.github.com", "rep...
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library(readr) Zoo <- read_csv("C:/Users/Admin/Desktop/Assignments/k_nn/Zoo.csv") view(Zoo) str(Zoo) summary(Zoo) #Create a function to normalize the data Zoo$type <- factor(Zoo$type, levels = c("1","2","3","4","5","6","7"), labels = c("Animal 1","Animal 2","Animal 3","Animal 4","Animal 5","Animal 6","Animal 7"...
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# Exploratory Data Analysis - Assignment 02 # ----------------------------------------------------------------------------- # Assignment # The overall goal of this assignment is to explore the National Emissions # Inventory database and see what it say about fine particulate matter pollution # in the United state...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/books.R \docType{package} \name{harrypotter} \alias{harrypotter} \alias{harrypotter-package} \title{J.K. Rowling's Harry Potter Series (Books 1-7)} \description{ This package contains the complete text of the first seven Harry Potter books, f...
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library(sparklyr) library(dplyr) sc <- spark_connect(master = "local") # Using dplyr #############################################################################" iris_tbl <- copy_to(sc, iris) flights_tbl <- copy_to(sc, nycflights13::flights, "flights") batting_tbl <- copy_to(sc, Lahman::Batting, "batting") src_tb...
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% Generated by roxygen2 (4.0.1): do not edit by hand \name{traitextract} \alias{traitextract} \title{Extract seed traits from SID} \usage{ traitextract(queryresult) } \arguments{ \item{queryresult}{A single row result from the function sidspecurl or sidspecurls} } \description{ This function checks a sidspecurl result ...
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#Author by 2017/9/1 R --vanilla --slave --args chr < LPmerge_concensusmap.R library("LPmerge") args <- commandArgs() chr <- args[5] getMap <- function(chromosome,population){ inp <- paste0(chromosome,population) map <- read.delim(inp, header=T, sep=",", comment.char="", fill=T, stringsAsFactors=F)#no retu...
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#' @export setGeneric("select_run", function(object, value = 0){standardGeneric("select_run")} ) #' From a folder give the run #' Author: Thibaud Derippe #' Arguments: object, the dossier object #' Arguments: value, the run you want to create from #' Output: a run object #' @export # object <- createFolde...
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###------------------------------------------------------------------- ### Group EPSILON: ### Nicole Castonguay, Ryan Goebel, Tim Przybylowicz, Brad Viles ### ### ALY6015.23546 ### Final Project ###------------------------------------------------------------------- ###--------------------------------------------------...
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##CLIMATE CHANGE climate <- read.csv("climate_change.csv") summary(climate) str(climate) training <- subset(climate, Year < 2007) testing <- subset(climate, Year > 2006) model1 <- lm(Temp ~ MEI + CO2 + CH4 + N2O + CFC.11 + CFC.12 + TSI + Aerosols, data = training) summary(model1) model2 <- lm(Temp ~ M...
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complete <- function(directory, id = 1:332) { ## 'directory' is a character vector of length 1 indicating ## the location of the CSV files ## 'id' is an integer vector indicating the monitor ID numbers ## to be used ## Return a data frame of the form: ## id nobs ...
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##------------------------------------------------------------------ ## This script is used to compute similarity matrices for the ## et of "reconstructed" egonets that were based on the original ## data provided by kaggle. See "06_CalcReconstructedEdgeNetwork" ## for details of the reconstruction process. ## ## This ...
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Optd_l2 <- function(winner, p1, p2, p3){ if("I1" %in% winner & "I2" %in% winner){ d <- (p1 + p2)/2 } else if("I1" %in% winner & "I3" %in% winner){ d <- (p2 + p3)/2 } else if("I1" %in% winner & "I4" %in% winner){ d <- c(p1 - .Machine$double.eps, p3 + .Machine$double.eps) } else if("I2"...
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\name{rowHWEs} \alias{rowHWEs} \title{Rowwise Test for Hardy-Weinberg Equilibrium} \description{ Tests for each row of a matrix whether the Hardy-Weinberg Equilibrium holds for the SNP represented by the row. } \usage{ rowHWEs(x, levels = 1:3, affy = FALSE, check = TRUE) } \arguments{ \item{x}{a matrix...
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Saanich_Data <- read_csv("~/Desktop/MICB_405/MICB405_proj/Saanich_Data.csv") df <- Saanich_Data %>% filter(Cruise == 72, Depth == 0.100 | Depth == 0.120 | Depth == 0.200) # subset data idx <- c(5, 6, 7, 9, 10, 12, 14, 23, 25) df <- df[, idx] element_list <- c("O2", "PO4", "NO3", "NH4", "NO2", "H2S", "N20", "CH4") el...
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# Borrowed from RSqlite.extfuns-package by Seth Falcon #.allows_extensions <- function(db) #{ # v <- dbGetInfo(db)[["loadableExtensions"]] # isTRUE(v) || (v == "on") #} .lib_path <- function() { ## this is a bit of a trick, but the NAMESPACE code ## puts .packageName in the package environment and this ...
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5-2 - Quantiatiative Trivariate Analysis (Lattice).R
# Three numerical variables # Create a gradient color-scale scatterplot xyplot( x = Critic.Score ~ Runtime, data = movies2014, col = gradient[cut(movies2014$Box.Office, 5)], pch = 16, main = "Runtime, Critic Score, and Box Office Revenue", xlab = "Runtime (min)", ylab = "Critic Sc...
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## create a 2 by 2 matrix for plots ## assign margin size par(mfrow = c(2, 2), mar= c(2, 2, 1, 1)) ## create the four plots with(hpc, { plot(hpc$Time_Date, hpc$Global_active_power, type = "n", xlab = "", ylab="Global Active Power") lines(hpc$Time_Date, hpc$Global_active_power, type ="l") plot(hpc$Time_Dat...
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library(shiny) library(tidyverse) ui <- fluidRow(numericInput("num_input", "Sepal Length Greater Than", min = 4.3, value = 6, max = 7.9), textOutput("text_test"), tableOutput("summary")) server <- function(input, output) { output$summary <- renderTable(iris %>% filter(Sepal.Length >...
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#···································································· # np.svar.R (npsp package) #···································································· # np.svar S3 class and methods # np.svar() S3 generic # np.svar.default(x, y, h, maxlag, nlags, minlag, degree, # ...
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ExploreCrisis.R
######### # Exploritory AMC Analysis with amcCrisisYear dataset # Christopher Gandrud # Updated 30 July 2012 ######### # Load required packages library(RCurl) library(ggplot2) library(Zelig) # Load data from the GitHub site url <- "https://raw.github.com/christophergandrud/amcData/master/MainData/amcCrisisYear.csv" ...
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####1_apply_rotation_to_datfiles.R##### ### Calls C++ functions datcorr created when compiling anttrackingUNIL/Antorient (https://github.com/laurentkeller/anttrackingUNIL) ### Takes tracking datfile and tagfile as an input and returns an oriented datfile ### Note that the tag files used as an input must have been or...
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Affair (Logi_Reg).R
affair <- read.csv(file.choose()) # Choose the claimants Data set str(affair) summary(affair) View(affair) attach(affair) table(affair$affairs) ## 0.625 #sum(is.na(affair)) #affair <- na.omit(affair) # Omitting NA values from the Data # na.omit => will omit the rows which has atleast 1 NA value dim(affair) ...
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library(ggplot2) library(plotly) library(gridExtra) library(reshape2) library(plyr) library(dplyr) df <- read.csv("student-mat.csv", header = TRUE) is.special <- function(x){ if (is.numeric(x)) !is.finite(x) else is.na(x) } (data.frame(sapply(df, is.special))) boxplot1 <- ggplot(df, aes(x=Dalc, y=G1, fill=Dalc))+...
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## 4_compute_cand_scores.r transforms the corpuses into dfms and performs different models on them to compute candidates and parties similarity ## It needs to be executed again when a new score is computed to append it to cand_scores.csv rm(list = ls(all = TRUE)) library(quanteda) library(readtext) library(stringi) l...
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# # This is a Shiny web application. You can run the application by clicking # the 'Run App' button above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) library(locfit) library(knitr) library(DT) library(tidyverse) library(dplyr) data(penny) # Define...
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Primer_sesion.R
variable.char <- 'Hola R' variable_num <- 3.1416 variable.int <- 149213L variable.logical <- TRUE typeof(variable_num) typeof(variable.char) class(variable_num) print(class(variable.char)) print(class(variable.num)) print(class(variable.int)) print(class(variable.logical)) x.1 <- 1 print((x.1*0.582...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/theme_cb.R \name{theme_cb} \alias{theme_cb} \title{Custom CB ggplot2 theme} \usage{ theme_cb(base_size = 11, ...) } \arguments{ \item{base_size}{base font size} \item{...}{other arguments passed to \code{ggplot2::theme_*()}} } \description{ ...
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Main.R
# TScriptLadies Nadine Drigo and Amy Gex # 13 January 2017 #import libraries library(raster) library(rgdal) #Source to run fuctions source('R/NDVIFun.R') # #import datasets, both urls are defined as variables to be used as arguments in the following function #if needed to change urls, make sure you change the last n...
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# Pre-requisite: Install the following packages using the Packages menu in R. # ODBC (provides database connectivity) # nnet (neural network functions) # arules (associative rule functions) # e1071 (mixed ML functions) # plotly (graphing) library(odbc) library(plotly) # Set up the connection to the CottageIndustries...
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rMVNmixture2.R
## ## PURPOSE: Random number generation from the mixture of the multivariate normal distributions ## * mixing performed in C++ code ## ## AUTHOR: Arnost Komarek (LaTeX: Arno\v{s}t Kom\'arek) ## arnost.komarek[AT]mff.cuni.cz ## ## CREATED: 07/11/2008 ## 15/03/2017 .C call u...
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#' compareTwoPlayerAves #' #' Uses the getPlayerInfo function to return a dataframe with the two player averages #' @param Player1 Name of the first player #' @param Player2 Name of the second player #' @param Player1Country Country of the first player #' @param Player2Country Country of the second player #' @export #'...
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library('MASS') x_train_n = data.matrix(x_train) x_test_n = data.matrix(x_test) # u [44461 * 41] u = svd(x_train_n)$u # p_c = [20 * 41] prominent_component = u[1:20,] # invp [41 * 20] invp = ginv(prominent_component) # x_train_n = [44461 * 41] x_train_n_pca = x_train_n %*% invp x_test_n_pca = x_test_n %*% invp y_hat =...
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library(tidyverse) library(googlesheets4) bo_email <- Sys.getenv("bo_email") gs4_auth(email = bo_email) source("./src/Update_Level.r") update_level() Data <- read_sheet("1YLYWYwPsXXAeTEFz1Mpi2tV6J13sXUveIIKY8HBDncI", sheet = "Mazout", range = "V10:V11") avg <- read_sheet("1YLYWYwPsXXAeTEFz1Mpi2tV6J13sXUveIIKY8HBDnc...
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matchupSummary.R
####### # In this file we'll create the final datamart, where we'll calculate the win ratio, gold and XP # difference between the heroes, the output file here should contain 113x113 lines, and could # be used as input for a website. ####### library(plyr) library(dplyr) combinedFinal <- readRDS("combinedFinal.RDS") h...
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library(labstatR) ### Name: gen.vc ### Title: Simula una variabile casuale discreta ### Aliases: gen.vc ### Keywords: distribution ### ** Examples x <- c(-2,3,7,10,12) p <- c(0.2, 0.1, 0.4, 0.2, 0.1) y <- NULL for(i in 1:1000) y <- c(y,gen.vc(x,p)) table(y)/length(y)
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# load data library(readr) library(dplyr) library(stringr) library(data.table) chemicals <- read_csv("Desktop/dataopen/chemicals.csv") %>% as.data.table() industry_occupation <- read_csv("Desktop/dataopen/industry_occupation.csv") %>% as.data.table() water_usage <- read_csv("Desktop/dataopen/water_usage.csv") %>% as.d...
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source("SPL_Big5GritDataPreparation/SPL_Big5GritDataPreparation.R") DATA = getCombinedData(FALSE) #Do the analysis of variance aov1f = aov(Agree~age,data=DATA) #an example of analysis of variance for Agree ~age summary(aov1f) #show the summary table #creating ANOVA for Personality traits against independent...
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setwd("/home/mfc/cwd/data.science/EDA/Project1") library(data.table) data <- read.table("/home/mfc/cwd/data.science/EDA/Project1/data.txt",sep = ";",header = T,na.strings = "?") date <- strptime(paste(data$Date,data$Time),"%d/%m/%Y %H:%M:%S") data <- cbind(date,data) png(filename="plot1.png",width =480 , height =...
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library(tm) colnames(unskewed_data)<-c("title","no","label","url") colnames(unskewed_data) myCorpus = Corpus(VectorSource(unskewed_data$title)) #class(myCorpus) #myCorpus = Corpus(VectorSource(sample)) myCorpus=tm_map(myCorpus,stripWhitespace) myCorpus = tm_map(myCorpus, content_transformer(tolower)) myCorpus = tm_map...
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require(ggplot2) # check for data directory and create if necessary if (!file.exists("data")) { dir.create("data") } # check for data file else download and extract archive to data directory dataFile1 = "data/Source_Classification_Code.rds" dataFile2 = "data/summarySCC_PM25.rds" if (!file.exists(dataFile1) ||...
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.restr2_eigenv <- function (autovalues, ni.ini, restr.fact, zero.tol) { ev <- autovalues ###### function parameters: ###### ev: matrix containin eigenvalues #n proper naming - changed autovalue to ev (eigenvalue) ###### ni.ini: current sample size of the clusters #n proper naming - changed ni.ini ...
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\name{trim} \alias{trim} \title{Function to Trim the Sample} \usage{ trim(Rs, alpha) } \arguments{ \item{Rs}{The sample of random rotations} \item{alpha}{The percent of observations to be trimeed} } \value{ S3 \code{trim} object; a sample of size n-(n*alpha) of random roatations } \description{ This functi...
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#2. Write a R program to get the details of the objects in memory name<-"vipin" int1 <- 1.5 int2 <- 6 nums <- c(1,2,3,5) print(ls()) print(ls.str())
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#Files for all global values of the app library(dplyr) library(geojsonio) library(lubridate) # Step 1 - Open your files here and prepare the dataframe to merge it with geojson here # Step 4 - Prepare your datas for plot here # Use this line to set up the format of the day column #your_data_frame$jour = ymd(your_da...
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########################################################################## #### #### Multiway-splits adaptive partitioning with distribution free approach #### #### Soo-Heang EO and HyungJun CHO #### #### Version 1.0.0 #### #### 30 Dec, 2013 #### ##########################################################...
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write_to_max_p = function(max_val, max_p){ for( i in (1:max_val) ){ if( i < j ){ for( j in ( i:(max_val)) ){ legal = F for( test_val in (3: 10000) ){ pval = pwilcox(test_val, i, j) * 2 # 2 tailed if( legal==F && pval < max_p ){ legal = T } if( legal && pval > max_p ){ ...
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\name{weight} \alias{weight} \docType{data} \title{Dataset of persons from the The Amsterdam Growth and Health Longitudinal Study (AGHLS)} \description{ Dataset of persons from the The Amsterdam Growth and Health Longitudinal Study (AGHLS) } \usage{data(weight)} \format{ A data frame with 450 observations on the foll...
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# Task 1 library(tidyverse) mpg %>% tbl_df() ggplot(data = mpg, aes(x = displ, y = hwy, color = trans)) + geom_point(color = "red") + geom_smooth() # Task 2 ggplot(data = mpg, aes(x = displ, y = hwy)) + geom_point(color = "red") + geom_smooth() # Task 3 ggplot(data = mpg, aes(x = displ, y = hwy, color = drv))...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/helperFunctions.R \name{isSubsetArbitrary} \alias{isSubsetArbitrary} \title{Function to determine whether A is a subset of B - arbitrary sets.} \usage{ isSubsetArbitrary(A, B) } \arguments{ \item{A}{the left operand - vector} \item{B}{the ri...
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library(dplyr) library(ggplot2) library(raster) setwd("J:/UEA/gitHRepos/HJA_analyses_Kelpie/Hmsc_CD/oregon_ada") # setwd("D:/CD/UEA/gitHRepos/HJA_analyses_Kelpie/Hmsc_CD/oregon_ada") gis_in <- "J:/UEA/Oregon/gis/raw_gis_data" gis_out <- "J:/UEA/Oregon/gis/processed_gis_data" # gis_in <- "D:/CD/UEA/Oregon/gis/raw_gis...
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#' Variance generic #' #' @param x an object for which we want to compute the variance #' @param \dots Any additional arguments to be passed to \code{var}. #' @export var = function(x, ...){ UseMethod("var") } #' @export var.default = function(x, ...){ stats::var(x, ...) } #' @export var.Bolstad = function(x, ...){...
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total.id.harea=read.csv("D:/data1/temp/total_id_hosparea.csv") total.id.harea summary(total.id.harea) sort(total.id.harea$id_birthday) subset(total.id.harea,by='id_birthday'==18000101) cd=read.csv("D:/data1/temp/20141227/corrected data(total_cd_list_hosparea_2002).csv") total.id.harea=cd total.id.harea.id=...
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#### Class selecting a dataset #### ## -------------------------------- .iViewDatasetControls <- setRefClass("iViewDatasetControls", contains = "iViewControls", methods = list( initialize = function(...) { uuid <<- Cardinal:::uuid() interface <<- ggroup(...) plist$dataset <<- "(no dataset)" widgets$dat...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/list_body.R \name{list_body} \alias{list_body} \title{Converts the body of a function to a list} \usage{ list_body(.f) } \arguments{ \item{.f}{A non-primitive function} } \value{ A list } \description{ This will help you see wh...
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# Title: Data_Deep_Dive_EP.R # Author: Aaron Weisberg # Created: Feb 04, 2017 # Last Edit: Feb 09, 2017 # Description: This script takes NFL play by play data # from 2009 to 2016 and explores the EP training data for relationhips # between points added and key scoring drivers in football. # Examples of suc...
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rm(list=ls()) # We will use functions from the purr package, which is included in the tidyverse library(tidyverse) # There are two types of vectors: # Atmomic vectors: logical, integer, double, character, complex and raw # integer and double are also called numeric vectors # Lists, which are sometimes called...
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# Dependencies ----- library(tidyverse) library(magick) # shiny related library(shiny) library(shinydashboard) library(shinyFiles) library(DT) # domestic functions # remove path, keep filename trim_path <- function(x){ x %>% strsplit("/") %>% sapply(function(.x) .x[length(.x)]) } # remove extension, keep filename ...
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printf = function(msg, ...) { cat(sprintf(msg, ...)) } logger = function(msg, ...) { sys.time = as.character(Sys.time()) cat(sys.time, "-", sprintf(msg, ...)) } print_vector = function(x) { sprintf("c(%s)", paste(x, collapse = ",")) } #' Convert valid alpha array to probabilities under log-linear formulat...
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library(lme4) library(blme) library(glmmTMB) library(brms) library(MCMCglmm) ## @knitr setup_runs form <- contrast~c.con.tr*c.type.tr*c.diff.tr+(1|id)+(1|item.new) mydata <- expand.grid(c.con.tr=factor(1:3), c.type.tr=factor(1:2), c.diff.tr=factor(1:2), ...
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confSim <- function(fun=mean,conf.level=0.95,mu=0,stdev=1,sleep=0.2,trials=100,n=8,N=20,xlim,sim=TRUE) { if(identical(fun,mean)==FALSE && identical(fun,sd)==FALSE) stop("function is not yet supported! ") if(missing(xlim)) {if(identical(fun,mean)) xlim=c(mu-7*stdev/sqrt(n),mu+10*stdev/sqrt(n)) if(ident...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in % R/offender_characteristics_relationship_to_victim.R \name{offender_characteristics_relationship_to_victim} \alias{offender_characteristics_relationship_to_victim} \title{offender_characteristics_relationship_to_victim} \usage{ offender_char...
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## Getting full dataset power <- read.csv("./household_power_consumption.txt", header=T, sep=';', na.strings="?", nrows=2075259, check.names=F, stringsAsFactors=F, comment.char="", quote='\"') power$Date <- as.Date(power$Date, format="%d/%m/%Y") ## Subsetting the data powerFiltered <- subset(pow...
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#' @title FUNCTION_TITLE #' @description FUNCTION_DESCRIPTION #' @param remove_diacritics PARAM_DESCRIPTION #' @return OUTPUT_DESCRIPTION #' @details DETAILS #' @examples #' \dontrun{ #' if (interactive()) { #' # EXAMPLE1 #' } #' } #' @seealso #' \code{\link[DBI]{dbDisconnect}} #' @rdname get_location_code_mapping_G...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/train.R \name{train} \alias{train} \alias{train,} \alias{train-method} \title{Train the model from a given engine} \usage{ train( x, runname, filter_predictors = "none", optim_hyperparam = FALSE, inference_only = FALSE, only_linea...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/withDoc.R \name{getb0.biseq} \alias{getb0.biseq} \title{compute b0, projection matrix, given methylation counts} \usage{ getb0.biseq(methmat, design, sigg = NULL) } \arguments{ \item{methmat}{a matrix of counts with rows corresponding to meth...
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#:# libraries library(caret) library(digest) library(OpenML) #:# config set.seed(1) #:# data data <- getOMLDataSet(data.id = 472L) head(df) df <- data$data #:# preprocessing head(df) #:# model regr_rf <- train(TIME ~ ., data = df, method = "ranger", tuneGrid = expand.grid( mtry = 3, splitrule = "variance", m...
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gfunction.the.alp.cc <- function(para, map, ref, Delta, delta, ncase, nctrl, xi, pr){ nmodel <- length(map$bet) the <- para[map$the] g.the.alp <- list() nthe <- length(the) n <- nrow(ref) const <- list() for(i in 1:nmodel){ id <- c(alp.index.cc(map, i), map$bet[[i]]) gam <- para[i...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/SegmentedHypTestEngine.R \name{run_scenario} \alias{run_scenario} \title{run_scenario.SegmentedHypTestEngine} \usage{ run_scenario( segmented_hyp_test_engine, segmented_researcher, stat_procedure, effects_list ) } \arguments{ \item{se...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/auditWorkers.R \name{auditWorkers} \alias{auditWorkers} \title{Audit Mechanical Turk workers} \usage{ auditWorkers(current_experiment_results, reference_results = NULL) } \arguments{ \item{current_experiment_results}{An object returned from \...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/appalmswts.R \name{appalmswts} \alias{appalmswts} \title{Retrieves data for the ALMS Weights graph from the DataMuster database} \usage{ appalmswts( property, sex, category, alms, zoom, start, rangewt1, rangewt2, timezone, ...
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`PDEscatterApprox` <- function(x,y,paretoRadius=0,drawTopView=TRUE,nrOfContourLines=20,dataPointLineSpec='b',nInPspheres=NaN){ # function [AnzInPspheres,ParetoRadius] = PDEscatterApprox(x,y,ParetoRadius,DrawTopView,NrOfContourLines,DataPointLineSpec,AnzInPspheres); # % schnelle Approximation fuer PDEScatter # % [A...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/shiny_common_all.R \name{fill_treatment_selection} \alias{fill_treatment_selection} \title{fill_treatment_selection} \usage{ fill_treatment_selection( df, input_id = "cbTreatmentSelection", label_id = "Select treatments to be displayed"...
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## Set location of repo. repo <- '/share/code/geospatial/ngraetz/rwjf_counties/' ## Load all libraries and functions. library(INLA) library(data.table) library(ggplot2) library(raster) library(rgdal) library(rgeos) library(gridExtra) library(grid) library(plyr) library(RColorBrewer) library(Hmisc) library(spdep) sourc...
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FunctionToAddLeadingZero.R
############################### # Now we wanna write a function to add zero to every code so that they have equal length, say five digits # nchar function needs a character variable is.character(pridgns) st1 <- as.character(pridgns) is.character(pridgns) table(pridgns) table(st1) dim(pridgns); dim(st1) nchar(st1)[1:3]...
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nice_palette = function(){ alpha =150 palette(c(rgb(85,130,169, alpha=alpha, maxColorValue=255), rgb(200,79,178, alpha=alpha,maxColorValue=255), rgb(105,147,45, alpha=alpha, maxColorValue=255), rgb(204,74,83, alpha=alpha, maxColorValue=255), rgb(183,110,39, alpha=alp...
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#!/usr/bin/Rsript # load required libraries ------------------------------------------------- library(VariantAnnotation) library(biobroom) library(BSgenome.Hsapiens.UCSC.hg19) library(org.Hs.eg.db) library(TxDb.Hsapiens.UCSC.hg19.knownGene) library(tibble) library(dplyr) library(data.table) library(purrr) # load i...
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01_top_frequented_nearby.R
#Find the top 3 visited places in range of the xy co-ords require(data.table) require(dplyr) require(magrittr) require(bit64) raw_train = fread("data/train.csv", integer64 = "character") # Get errors later on when joining on placeID that is integer64. #Use "Character" instead as it is only a key #Use as.data.frame to...
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clase 02_04.R
#Scoping Rules setwd("~/GitHub/Programacion_Actuarial_lll") ^ lm lm <- function(x){x*x} lm rm(lm) lm search() #te muestra la lista de busqueda library(swirl) search() hacer.potencia <- function(n) { potencia <- function(x) { x^n } potencia } cubica <- hacer.potencia(3) cubica (3) cuadrada <- hacer.potenc...
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loaddata.R
# # loaddata.R # # Author: Sean Spicer (sean.spicer@gmail.com) # Date: 11-Jul-2015 # # # If the raw data has not been processed, download- unzip- and load- it. # Save it to a native R object file for subsequent runs. # # Source Location: https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2Fhousehold_power_consumption...
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linear.R
LOGS <- c("log", "log1p", "log10", "log2") # code is mainly copied from validate, but needed for linear sub expressions in # conditional statements. #' Check which rules are linear rules. #' #' Check which rules are linear rules. #' #' @note `errorlocate` supports linear, #' categorical and conditional rules to be use...
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Lecture3_looping_and_functions.R
# The script works on the current directory # # Samuel Rodriguez Bernabeu # Assignment: lecture 3 # deliver date: 06/10/14 # # # Exercise 1: For each of the following code sequences, predict the result. # Then do the computation: answer <- 0 for(j in 3:5) { answer <- j + answer } cat("Answer ", answer) ...
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Hpoints.R
##' Plotting positions for exponential retun level plots. ##' ##' The plotting positions are numeric values to use as the abscissae ##' corresponding to the order statistics in an exponential return ##' level plot. They range from 1 to about \eqn{\log n}{log(n)}. ##' They can be related to the plotting positions given...
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met-datatable.R
# Tailor to download a subset of the data for the lab library(data.table) # 1. Download the data stations <- fread( "ftp://ftp.ncdc.noaa.gov/pub/data/noaa/isd-history.csv", check.names = TRUE ) # continental US only, remove AK, HI, territories and weather stations with missing WBAN numbers st_us <- stations[ ...
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mtkParsor.R
# Mexico Toolkit # # version : 0.01 # date : 30 nov 2009 # MAJ : 10 dec 2009 # licence : GPL # Author(s) : Juhui Wang, MIA-Jouy en Josas, INRA, 78352 # repository: https://mulcyber.toulouse.inra.fr/projects/baomexico/ # Web : http://www.reseau-mexico.fr/ # #' $Rev:: 240 $: revision number of the ...
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s_gwet.R
kappa_gwet <- tabItem( tabName = 'kappa_gwet', fluidRow(column(width = 10, offset = 1, style = 'padding-left: 0px; padding-right: -5px;', box( id = 'gwetDocum', width = NULL, style = measure_title_sty...
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KnaveAndVarlet/ADASS2019
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csubref.r
#! /usr/bin/env Rscript # c s u b r e f . r # # Summary: # 2D array access test in R, using a reference class containing an array. # # Introduction: # This is a test program written as part of a study into how well different # languages handle accessing elements of 2D rectangular...
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emmalouiser/Data_Visualisation
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plots.R
library(plotly) library(quantmod) ## A simple example with a couple of actors ## The typical case is that these tables are read in from files.... actors <- c("Alice", "Bob", "Cecil", "David", "Esmeralda") g <- make_graph(edges=c("Bob", "Cecil", "Cecil", "David","David", "Esmeralda", "Alice", "Bob", "Alice", "Alice", "...