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### Jinliang Yang ### April 23th, 2015 ### gbs2bed_ames <- function(gbsfile="/group/jrigrp4/AllZeaGBSv2.7impV5/ZeaGBSv27_Ames282.hmp.txt", outfile="/group/jrigrp4/AllZeaGBSv2.7impV5/ZeaGBSv27_Ames.bed5"){ ### read in GBS file #library("data.table") ames <- fread(gbsfile, header=TRU...
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#Example 2.10,chapter 5,scetion III.2,page 414 #package used matlib v0.9.1 #Github reposiory of matlib :https://github.com/friendly/matlib #installation and loading library #install.packages("matlib") library("matlib") N <- matrix(c(0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0),ncol=4) P <- matrix(c(1,0,1,0,0,2,1,0,1,1,1,0...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/reducolor.R \name{reducolor} \alias{reducolor} \title{Reduce image color to either 2 or 8 colors for cartoonized effect} \usage{ reducolor(input_path, style, output_path = NULL) } \arguments{ \item{input_path}{character the image file path} ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/read.R \name{fa_read} \alias{fa_read} \title{fa_read} \usage{ fa_read(file, type = "auto") } \arguments{ \item{file}{fasta file} \item{type}{one of 'DNA', 'RNA', 'AA', 'unknown' or 'auto'} } \value{ BStringSet object } \descr...
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# Initialize Boilerplate ---- source("boilerplate.R") source("data/comment.R") InitGlobals() ## Yngve ==== ### Query Data dataset <- GetCommentYngve() ### Plot metric <- "Comment Yngve (Log Scale)" title <- "Distribution of Comment Yngve" plot.dataset <- dataset %>% inner_join(., COMMENT.TYPE, by = "comment_id")...
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library(shiny) library(knitr) # To prepare Rmarkdown instructions library(tidyverse) # For data manipulation library(readtext) # Read in .doc and .docx files library(udpipe) # Part-of-speech-tagger library(tools) # To get file extension library(DT) # To create a datatable library(colourpicker) library(googleLanguageR...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/RcppExports.R \name{resultC} \alias{resultC} \title{Bias of estimated sigma and average model size using Rcpp} \usage{ resultC(hsigma, hbeta) } \arguments{ \item{hsigma}{the estimated sigma} \item{hbeta}{the estimated coefficients} } \value{...
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myKable <- function(x , row.names = NA , boldRowNames = TRUE , boldColNames = TRUE , ...){ # Function to bold row.names and colnames # I still need to add explicit handling for things other than markdown if(boldRowNames){ if(is.na...
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# Exploration of complaint file # ADMINISTRATIVE NOTES # Note: To describe database at any point, use str(*name*) # Note: To clear R workspace, use rm(list = ls()) # Note: Searching R help files - RSiteSearch("character string") # Note: To clear console, use CTRL + L # PURPOSE # The goal of this exercise was to take...
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library(data.table) library(purrr) library(stargazer) library(vioplot) library(corrplot) library(MASS) library(car) library(nortest) #Working with data! ##We have a file with 2012 presidential election results in Russia elec_file <- "47130-8314.csv" ##Load this file into R (data...
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#' Decode base64 #' #' Decodes base64, which is a common format returned by the GitHub API. #' @keywords internal decode <- function(encoded) { rawToChar(base64enc::base64decode(encoded)) %>% strsplit("\n") %>% .[[1]] } #' Turn key value pairs into a string #' #' @para ... named arguments where the name is...
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#' ba_describe.ba_locations #' #' describe method for an object of class brapi_con, which will only display the crop, database address:port and user #' #' @param x a brapi_locations object #' @param ... other print parameters #' @author Reinhard Simon #' @example inst/examples/ex-describe.R #' @family brapiutils #' @ex...
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#------------------------------------------------------------------- # SIMPLE REGRESSION #------------------------------------------------------------------- x<-c(6,6.3,6.5,6.8,7,7.1,7.5,7.5,7.6) y<-c(39,58,49,53,80,86,115,124,104) plot(x,y,main="Simple Linear Regression") Sxy = sum((x-mean(x))*(y-mean(y))) #...
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#輸入變數:class_lab:類別屬性,fea:欲評估屬性 #輸出變數:eval_value:屬性的IG值 IG=function(class_label,fea){ fea=as.data.frame(fea) eval_value=as.data.frame(matrix(,ncol(fea),2)) colnames(eval_value)=c("feature","IG") eval_value[,1]=colnames(fea) eval_value[,2]=sapply(1:ncol(fea),FUN=function(i,fea,class_label){ eval=cbind(fea[i],cl...
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# About Survival Analysis library(OIsurv) # Includes the "survival" and "KMsurv" packages used for analysis and data sets #other packages in the market, this isn't the only one for survival analysis # What is survival analysis? - A set of methods for analyzing data where the outcome variable is the time until the occu...
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data <- read.table("data/2.3 data.txt", header = TRUE) data data2 <- data[2:6] data2 summary(data2) S <- cov(data) # Covarience R <- cor(data2) # Correlation R uniq_root <- eigen(R) uniq_root uniq_root$values/sum(uniq_root$values) p_data <- princomp(data2, cor=TRUE) summary(p_data) screeplot(p_data, type="lines", pch=1...
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source("packages.R") loss.small <- readRDS("loss.small.rds") nb.evals <- loss.small[, { is.dec <- c(TRUE, diff(loss) < 0) dt <- data.table(loss, changes)[is.dec] result <- .C( "modelSelectionFwd_interface", loss=as.double(dt$loss), complexity=as.double(dt$changes), N=as.integer(nrow(dt)), mod...
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## read in all supporting data for AT2 and get it organised ## using master file for pigs and C/N stuff.... ## FIXME: no actual diatom counts in Dropbox???? ## read in files master <- read.csv("data/private/AT2_MasterSpreadsheet_15-12-15.csv") # rundepth is topdepth cladorel <- read.csv("data/private/AT2-Cladocera-cou...
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#' Read a docx, pptx, potx, or xlsx file or use an existing object from officer #' if provided #' #' [read_officer()] is a variant of [officer::read_docx()], #' [officer::read_pptx()], and [officer::read_xlsx()] that allows users to read #' different Microsoft Office file types with a single function. #' [read_docx_ext...
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library(testthat) library(oncomix) test_check("oncomix")
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\name{nzmaths} \alias{nzmaths} \docType{data} \title{ Maths Performance Data from the PISA 2012 survey in New Zealand } \description{ Data on maths performance, gender, some problem-solving variables and some school resource variables. } \usage{data("nzmaths")} \format{ A data frame with 4291 observations on the foll...
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# R package rjags file R/dic.R # Copyright (C) 2009-2013 Martyn Plummer # # This program is free software; you can redistribute it and/or # modify it under the terms of the GNU General Public License version # 2 as published by the Free Software Foundation. # # This program is distributed in the hope that it will...
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l3 <- function(logalpha_, prioralpha_){ return(dnorm(logalpha_, prioralpha_[1], sqrt(prioralpha_[2]), log=TRUE)) }
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.separate_img = function(img, levels = NULL, drop_zero = TRUE){ if (is.null(levels)) { levels = unique(c(img)) } else { levels = unique(levels) } if (drop_zero) { levels = setdiff(levels, 0) } if (length(levels) == 0) { stop("No non-zero va...
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# server.R ###Need to: ##Convert to LMI and FMI #finish the final calculations #Produce the radar charts. library(fmsb) maxmin <- data.frame( Z_TR=c(2, -2), Z_LA=c(2, -2), Z_LL=c(2, -2), Z_RL=c(2, -2), Z_RA=c(2, -2)) chartDim <- c(1,1) #setwd('X:\\bhinton\\radar_chart\\Plot-From-DXA') blackData <- read...
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Diagnose Monocarp Growth Kernel.R
### This script assumes that you have just source'd the Monocarp model ### using MonocarpSimulateIBM.R # or, load an .Rdata file with saved simulation results load("MonocarpSimData.Rdata") require(car) require(mgcv) source("../utilities/Standard Graphical Pars.R") ## Construct a data set of plausible size pick....
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#----時間紀錄(開始)---- startTime <- Sys.time() #----資料初始化(本地端)---- sourceData <- read.csv(file = "assets/商品資料庫_s.csv") #讀取原始資料 preferenceTable <- read.csv(file = "assets/preferenceTable_s.csv") #讀取商品偏好表 sourceData <- sourceData[c(-1, -13)] #移除不必要的資料欄位 names(sourceData)[11] <- "重量" #重新命名欄位名稱 goodData <- sourceData #將原始資料複製一...
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shinyUI(fluidPage( # Header: titlePanel("Shiny - UW Course Evaluations", title="Analysis of UW Course Evaluations"), # Sub-header fluidRow(column(12,p("Coded by William Kong. All rights reserved."))), # Input in sidepanel: sidebarPanel( #------------------------------ Input D...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/showcues_function.R \name{showcues} \alias{showcues} \title{Visualizes cue accuracies from an FFTrees object in a ROC space} \usage{ showcues(x = NULL, data = "train", main = NULL, top = 5, palette = c("#0C5BB07F", "#EE00117F", "#15983D7F",...
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## R file to run shiny apps - using examples from R Studio text lessons library(shiny) ## need to highlight desired code and use 'ctrl+enter' to run ## use path from project working directory ## Lesson 1: Basic Histogram runApp("RStudio - text lessons/Lesson1-histogram") ## Lesson 2: HTML runApp("RStudio - text less...
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#' Converts all columns of class POSIXct or POSIXt in a data.frame to Date class. #' #' @param xx A data.frame containing columns of class POSIXct or POSIXt #' #' @return data.frame with any columns of class POSIXct or POSIXt converted to Dates #' @export #' #' @examples #' z <- seq(1472562988, 1472563988, 100) #' df1 ...
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#Resources #https://www.datacamp.com/community/tutorials/pca-analysis-r #http://www.sthda.com/english/articles/31-principal-component-methods-in-r-practical-guide/118-principal-component-analysis-in-r-prcomp-vs-princomp/ #https://www.climate.gov/maps-data/dataset/past-weather-zip-code-data-table #::::: Import ::::: ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/readBlast.R \name{readBlast} \alias{readBlast} \title{Convert NCBI BLAST+ Files to Dataframe} \usage{ readBlast( file, minE = 1, length = 0, identity = 0, removeExactMatches = FALSE, scope = NULL, packMatches = NULL ) } \argumen...
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ggd.qqplot = function(pvector, main=NULL, ...) { o = -log10(sort(pvector,decreasing=F)) e = -log10( 1:length(o)/length(o) ) plot(e,o,pch=19,cex=1, main=main, ..., xlim=c(0,max(e)), ylim=c(0,max(o)), ann=FALSE) mtext(expression(Expected~~-log[10](italic(p))), side=1, line=2.5, cex=0.7) mtext(e...
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corr <- function(directory, threshold = 0){ #function filelist <- list.files(path = directory, pattern = "*.csv", full.names = TRUE) # create a list of files vector id <- 1:332 for (i in id){ data <- read.csv(filelist[i]) #loop through all the files and read them threshold <- sum(complet...
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# r # input for post_echam.r message("###################### namelist.general.post.r start ##########################") graphics.off() options(show.error.locations=T) options(warn=2) # stop on warnings #options(warn=0) # back to default # clear work space if (T) { message("\nclear work space ...") ws <- ls(...
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library(vioplot) hf <- read.delim("data/hf_diabetes+labs+meds.csv", stringsAsFactors=F) print(sprintf("total input data rows: %d", nrow(hf))) hf$lab_date <- as.Date(hf$lab_date, "%Y-%m-%d") hf$med_date <- as.Date(hf$med_date, "%Y-%m-%d") hf <- hf[hf$lab_date >= hf$med_date,] #hf <- hf[hf$numeric_result>3,] print(spr...
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% Generated by roxygen2 (4.1.0): do not edit by hand % Please edit documentation in R/hello.R \name{xml_parse} \alias{xml_parse} \title{Parse XML string} \usage{ xml_parse(x) } \description{ Parse XML string } \examples{ xml_parse("<foo> 123 </foo>") }
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asm_GUI_LB <- tabPanel( "Library Builder (offline)", DisclaimerMessage, EmailMessage )
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library(pROC) # install with install.packages("pROC") library(randomForest) # install with install.packages("randomForest") ## Generate weight and obesity datasets. set.seed(420) # this will make my results match yours num.samples <- 100 ## genereate 100 values from a normal distribution with ## mean 172 and stan...
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library(tidyverse) Episodes <- read_csv("https://raw.githubusercontent.com/derek-corcoran-barrios/The_office/master/The_Office_Episodes_per_Character.csv") words <- read_csv("https://raw.githubusercontent.com/derek-corcoran-barrios/The_office/master/The_office_Words.csv") stop_words <- read_csv("https://raw.githubus...
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impD <- function(NrFile = 1) { # import the raw txt file(s), NrFile: which file to import files <- list.files(paste0(getwd(), "/rawdata"), full.names = TRUE, pattern = "*.txt") filesShort <- list.files(paste0(getwd(), "/rawdata"), full.names = FALSE, pattern = "*.txt") print(paste0("The file: '", filesShort[NrFi...
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library(pterrace) ### Name: muscle_fiber_dat ### Title: Point cloud sampled from the muscle tissue cross-sectional image ### Aliases: muscle_fiber_dat ### Keywords: datasets ### ** Examples # load muscle fiber data data(muscle_fiber_dat) # input variables Xlim <- c(-50,350) Ylim <- c(-50,250) lim <- cbind(Xlim, Yl...
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a = 2 b = 3 c = a + b print(c)
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## This is the R script to create a tidy dataset from wearble computing dataset found at ## https://d396qusza40orc.cloudfront.net/getdata%2Fprojectfiles%2FUCI%20HAR%20Dataset.zip ## The script assumes this dataset has been extracted into your working directory ## The lines below read the data into R features<-read.tab...
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### R code from vignette source '/home/ken/teaching/d29/notes/bDiscrim.Rnw' ################################################### ### code chunk number 1: berzani ################################################### hilo=read.table("manova1.txt",header=T) attach(hilo) fno=as.integer(fertilizer) plot(yield,weight,pch=fno,...
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library(tidyverse) library(tabulizer) library(textclean) library(stringr) f <- "data/documentView_retrieveStatementPdf07.pdf" f1 <- "data/documentView_retrieveStatementPdf07 (2).pdf" hawaii_telecom <- function(f){ local_df <- pdf_text(f) %>% # читаємо pdf .[[1]] %>% str_split(., "\n", simplify = TRUE) %>%...
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################Preliminary Analyses to explore the impact of distance between sites on grazer dissimilarity ##Started by Coreen April 2020 ##This script makes distance matrices between sites and plots Bray-Curtis grazer dissimilarity between each pair of sites against dstance between each pair of sites for 2014-207 #...
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rm(list = ls()) home = '/Volumes/GoogleDrive/My Drive/projects/TFbenchmark/' setwd(home) source('code/lib/utils.r') # Load network network = read.csv(file = 'data/TF_target_sources/omnipath_scores/database_20180915.csv', stringsAsFactors = F) names(network)[5:8] = c('curated', 'ChIPseq', 'TF binding motif', 'inferre...
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NHFaux <- function(r,L, lambdaD,posD,typeD, T) { posLW<-L[(L>=r)&(L<=(T-r))] L1D<-(1-min(lambdaD)/lambdaD) L1L0<-sapply(posLW, FUN = prodN2, r=r,L1D=L1D,posD=posD, typeD=typeD) NHF<-sum(L1L0)/length(posLW) return(NHF) }
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\encoding{UTF-8} \name{plotICC} \alias{plotICC} \alias{plotICC.Rm} \alias{plotjointICC} \alias{plotjointICC.dRm} \title{ICC Plots} \description{Plot functions for visualizing the item characteristic curves} \usage{ \method{plotICC}{Rm}(object, item.subset = "all", empICC = NULL, empCI = NULL, mplot = NULL, xlim = c...
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# # Read vcf file # a = 'C:/chr11_113low_56high/1g115low_1g56exomehigh_filtered.hg19.chr11.vcf' # # Read vcf helper functions # source('likelihood_vcf.r') filen = a filecon = file(filen, open='r') # # Skip header of vcf file. # n = may be changed until reach header that contains list of samples tt2 =...
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`haplo.bin` <- function(formula1, formula2, pheno, haplo, sim, effect="add", sub=NULL, adjust=FALSE) { library(stats) call <- match.call() hapFreqs <- haplo$hapObject$final.freq haplo <- haplo$hapData if(!identical(as.character(unique(pheno$ID)), as.character(unique(haplo$ID)))) stop("Phenotype data and Hap...
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data(kidney) counts <- kidney$counts # Matrix of read counts from KIRC dataset replic <- kidney$replic # Replic vector indicating paired columns treatment <- kidney$treatment # Treatment vector indicating Non-Tumor or Tumor columns nf <- apply(counts, 2, quantile, 0.75) require(fdrtool) ### Example 1: Simulate Ma...
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#Importing data data("USArrests") str(USArrests) #Looking at the data head(USArrests) tail(USArrests) str(USArrests) #Is there any missing value in the dataset? any(is.na(USArrests)) #Any errors in the data set summary(USArrests) #Scaling the data USArrests_scaled <- scale(USArrests) head(USArrests_scaled) #K-means c...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/iotanalytics_operations.R \name{iotanalytics_describe_logging_options} \alias{iotanalytics_describe_logging_options} \title{Retrieves the current settings of the AWS IoT Analytics logging options} \usage{ iotanalytics_describe_logging_options...
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library(ape) testtree <- read.tree("9071_0.txt") unrooted_tr <- unroot(testtree) write.tree(unrooted_tr, file="9071_0_unrooted.txt")
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data = iris plot(x=iris$Sepal-Length), y=iris$Septal.Width)
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## Put comments here that give an overall description of ## what your functions do makeCacheMatrix <- function(x = matrix()) { inv <- NULL set <- function(y) { x <<- y inv <<- NULL } get <- function() x setinv <- function(inverse) inv <<- inverse...
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library(dplyr) library(data.table) library(lubridate) jobsDF <- fread('data/uniqueDF_4_21.csv', stringsAsFactors = FALSE, colClasses = "character") xmlDF <- fread('data/GDP_XML_4_21.csv') joinedDF_noAgent <- left_join(jobsDF, xmlDF, by = "requestLink") successJobs <- filter(joinedDF_noAgent, status == ...
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library(polspline) ### Name: predict.polymars ### Title: Polymars: multivariate adaptive polynomial spline regression ### Aliases: predict.polymars ### Keywords: smooth nonlinear ### ** Examples data(state) state.pm <- polymars(state.region, state.x77, knots = 15, classify = TRUE, gcv = 1) table(predict(state.pm, x...
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\name{functiontable} \alias{functiontable} \title{a table of functions in a package} \usage{ functiontable(pkg, ...) } \arguments{ \item{pkg}{a string specifying the name of a package,} \item{...}{additional arguments to xtable} } \value{ the output of xtable (as html, or specify type="latex") } \description{ ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/litterDiallel.R \name{plot_ci} \alias{plot_ci} \title{plot_ci} \usage{ plot_ci( midvals, narrow.intervals, wide.intervals, names = 1:length(midvals), add = FALSE, main = "", main.line = 2, xlab = "Estimate", xlab.line = 2.5,...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/related_artists.R \name{related_artists} \alias{related_artists} \title{Prints dataframe of artist's related artists.} \usage{ related_artists(user_auth_token, artistName) } \arguments{ \item{user_auth_token:}{String containing the users auth...
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library(forecast) ### Name: thetaf ### Title: Theta method forecast ### Aliases: thetaf ### Keywords: ts ### ** Examples nile.fcast <- thetaf(Nile) plot(nile.fcast)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/client_slack.R \name{client_slack} \alias{client_slack} \title{Slack client} \usage{ client_slack(slack_webhook, ...) } \arguments{ \item{slack_webhook}{a webhook obtained from the Slack API settings.} \item{...}{named arguments with additio...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/createstartvalues.R \name{createstartvalues} \alias{createstartvalues} \title{calculate start values from prior knowledge} \usage{ createstartvalues( ranks = NULL, rankclasses = NULL, shape = 0.3, startvalue = 1000, k = 100 ) } \arg...
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##### LAPD Calls Part Deux################## library(ggplot2) library(dplyr) library(scales) ############## Time series of number of calls per day##################### lapd.data <- read.csv("LAPD_Calls_for_Service_YTD_2015.csv") Day <- unique(lapd.data$Dispatch.Date) daytotal <- vector() for (i in 1:length(Day)){ ...
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#' Calculates the cumulated discounted time series #' #' Discount and cumulated a times series - gives the time series of the net #' present value (NPV). Baseyear for the NPV is the first period. #' #' #' @param data a quitte object containing consumption values - consumption has #' to be named "Consumption" #' @param ...
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data <- read.csv("Seatwork 2 Midterm/midetrmseatwork_data.csv") MeanFunction <- function(data, removeNA = TRUE){ col_num <- ncol(data) means_per_col <- numeric(col_num) for(element in 1:col_num){ means_per_col[element] <- mean(data[ ,element], na.rm = removeNA) } means_per_col } MeanFunction(data) subse...
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#' @title WCCMH team functions #' @description #' cmh_recode recodes Washtenaw CMH team names to a standardized #' team format. #' recode_team_prog recodes Washtenaw CMH team/program names to a standardized #' program format. #' cmh_teams_f factors (ordered is an option) teams. #' cmh_priority_dt assigns a priority to ...
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library(parallel) clust <- makePSOCKcluster(c("greywagtail", "greyheron", "greypartridge", "greyplover")) x <- list(X=5,Y=4,Z=8,T=9) lambda <- clusterApplyLB(clust, x, sqrt) stopCluster(clust)
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#' Rowwise rates for groups #' #' @param y A tgCMatrix sparse Matrix. #' @param g A factor defining the group for each column. #' #' @export #' group_rates <- function(y, g){ if(!is(y, "dgCMatrix")) stop("y must be class dgCMatrix") if(!is.factor(g)){ warning("Coercing g into a factor") g <- as.factor(g) ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/try_catch_error_as_na.R \name{try_catch_error_as_na} \alias{try_catch_error_as_na} \title{Skip error messages, records NA, and continues to loop on the expression} \usage{ try_catch_error_as_na(expr) } \arguments{ \item{expr}{expression} } \d...
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context("Integration test of baked in templates") test_that("Baked in templates with single time points work with mtx data",{ mtx_data <- read_data(spekex::get_data_path("mtx")) mtx_spek <- spekex::read_spek(spekex::get_spek_path("mtx")) templates <- load_templates() mtx_templates <- c(templates$ComparisonBar...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sample_2006.R \docType{data} \name{sample_2006} \alias{sample_2006} \title{Sample of 2006 presidential elections.} \format{election_2006: A data frame with 7200 rows and 10 columns: \describe{ \item{state_code, state_name, state_abbr}{Chara...
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XGBoost-Tutorial.R
setwd('C:/Users/HK/Desktop/GitHub/Graduate/DataMining/XGBoost') ##### XGBoost Tutorial ##### # how to use Xgboost to build a model and make predictions # gradient boosting framework: linear & tree learning # Input Type: matrix, dgCMatrix, xgb.DMatrix (recommended) # 1.2 Installation library(xgboost) # 1.3 Learning ...
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credit card.R
#Logistic Regression #Credit Card Problem Crcard <- read.csv("//Users//smitshah//Desktop//Assignments//Logistic Regression//creditcard.csv") attach(Crcard) str(Crcard) Crcard.omit=na.omit(Crcard) Crcard.omit #Model Building Model1 <- glm(factor(card)~reports+age+income+share+expenditure+factor(owner)+factor(selfemp)...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot_phylo_persistence.R \name{plot_phylo_persistence} \alias{plot_phylo_persistence} \title{Plot a phylogram to visualize a project prioritization} \usage{ plot_phylo_persistence( x, solution, n = 1, symbol_hjust = 0.007, return_da...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/eyer-synchronisation.R \name{find_group_match} \alias{find_group_match} \title{tries to find a sequency of N elements in eye_durations that correspond to the synchro durations returns index of first matchin eye event} \usage{ find_group_match...
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# Loading required Packages library(dplyr) #Set Working Directory for reading dataset setwd("C:/Users/r.pratap.singh/Desktop/JohnHopkins/exdata_data_household_power_consumption") #Read the file power_data <- read.table("household_power_consumption.txt", header=T, sep = ";", na.strings = "?") head(power_data) str(...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/recalc_snowextent_scene.R \name{recalc_snowextent_scene} \alias{recalc_snowextent_scene} \title{recalc_snowextent_scene} \usage{ recalc_snowextent_scene(store_directory, dem_subdir, height_zone_size, threshold1_snow, threshold2_cloud) } \ar...
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library(tidyverse) library(rethinking) setwd(dirname(rstudioapi::getActiveDocumentContext()$path)) library(grid) library(gridGraphics) library(gridExtra) loadRData <- function(fileName){ #loads an RData file, and returns it load(fileName) get(ls()[ls() != "fileName"]) } load(file="../model_outputs/Rda_files/df_...
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### Read data and plot a histogram data <- read.table("household_power_consumption.txt", sep=";",header=TRUE) data$DateTime <- strptime(paste(data$Date, data$Time), "%d/%m/%Y %H:%M:%S") data <- subset(data, as.Date(DateTime) >= as.Date("2007-02-01") & as.Date(DateTime) <= as.Date("2007-02-02")) data$...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/run-iscam.R \name{run_multiple_iscam} \alias{run_multiple_iscam} \title{Run multiple iscam models in parallel} \usage{ run_multiple_iscam(model_dirs, ...) } \arguments{ \item{model_dirs}{A vector of model directories} \item{...}{Arguments pa...
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library(magrittr) library(dplyr) #####UTILITY##### binvec_to_b10 <- function(bin_vec) { bin_vec %>% as.character %>% paste(collapse = "") %>% strtoi(base = 2L) } filter_step_o2 <- function(df, pos) { df %>% filter(.[[pos]] == as.integer(median(.[[pos]] + 0.5))) } filter_step_co2 <- function(df, p...
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#This script is useful if you need an easy way to see what's in everyone's directory. #To run this script type 'Rscript dircheck.r ______ __' into the terminal, #The first blank after the name has five options: runs, check, fs, all, allfiles, subfiles. Each are explained below #The second blank is the subject index yo...
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library(RMariaDB) library(tm) library(syuzhet) library(wordcloud) library(randomForest) library(plyr) #Run random forest algorigthm. Random_Forest = function(){ source("helpers.R") query <- "SELECT DISTINCT tweet, person FROM candidates;" df = dbGetQuery(con, query) df$tweet = clean(df$twee...
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### apply, built in works with rows/columns of matrices and arrays ### aggregate, built in for groups by factors in single vector ### read 2011 wickham, jorunal of statistical software http://www.jstatsoft.org/v40/i01/paper ### plyr::ddply, groups by factor in data.frame ### plyr::l*ply ### dplyr optimized for large da...
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data(mtcars) head(mtcars)
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library(mltools) ### Name: exponential_weight ### Title: Exponential Weight ### Aliases: exponential_weight ### ** Examples exponential_weight(1:3, slope=.1) exponential_weight(1:3, slope=1) exponential_weight(1:3, slope=10)
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##Code Snippets Usefull readFun <- function( filename ) { # read in the data data <- read.csv( filename, header = FALSE, col.names = c( "Name", "Gender", "Count" ) ) # add a "Year" column by removing both "yob" and ".txt" from file name data$Year <- gsub(...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/aiplatform_objects.R \name{GoogleCloudAiplatformV1BatchPredictionJobOutputInfo} \alias{GoogleCloudAiplatformV1BatchPredictionJobOutputInfo} \title{GoogleCloudAiplatformV1BatchPredictionJobOutputInfo Object} \usage{ GoogleCloudAiplatformV1Batc...
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library(mtk) ### Name: getDistributionParameters-methods ### Title: The 'getDistributionParameters' method ### Aliases: getDistributionParameters-methods getDistributionParameters ### ** Examples # Define three factors x1 <- make.mtkFactor(name="x1", distribName="unif", distribPara=list(min=-pi, max=pi)) x2 <-...
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Calzetti_Base_Fluxes.r
############################################################################# ############################################################################# ## This calculates extinction corrected fluxes using the Calzetti et al. ## ## (200) extinction law. ## ##...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Sobolev.R \name{Sobolev} \alias{Sobolev} \alias{d_p_k} \alias{weights_dfs_Sobolev} \alias{d_Sobolev} \alias{p_Sobolev} \alias{q_Sobolev} \title{Asymptotic distributions of Sobolev statistics of spherical uniformity} \usage{ d_p_k(p, k, log = ...
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05 - SVM.R
######################### 02 - SVM ######################### #Cargamos las librerías library(doMC) library(caret) library(Boruta) library(ggplot2) library(ggthemes) library(reshape2) library(gridExtra) library(DMwR) library(caret) #Establecemos los núcleos usados a 8 registerDoMC(cores=7) #Establezco el directorio d...
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#' Include A Tweet in All R Markdown Formats #' #' Similar to [knitr::include_graphics()], but for tweets. In HTML documents, #' the tweet is embedded using [tweet_embed()] and for all other documents types #' a screen shot of the tweet is rendered and used [tweet_screenshot()]. If you #' would rather that just the tex...
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to_phylo.R
#' Convert patristic matrix to a phylo object. Used inside: summarize_datelife_result, CongruiyTree. #' @param patristic_matrix A patristic matrix #' @param clustering_method A character vector indicating the method to construct the tree. Options are #' \describe{ #' \item{nj}{Neighbor-Joining method applied with ape:...