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#setwd("C:/Users/Logan/MyRProgram") #--------------------------------------------------------------------------------------------------- #1. Download and extract raw datasets from source (unnecessary to repeat if datasets are unchanged). if(!file.exists("./data")) { dir.create("./data")} fileURL <- "https:...
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#' Generate fixed width file in R #' #' https://gist.github.com/haozhu233/28d1309b58431f4929f78243054f1f58 #' #' @param dt The data to be printed #' @param width Either a single number or a vector of widths #' @param con Connection, as in `writeLines()`; default is `stdout()`. #' @param align ...
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r <- 0.05 rr <- 1 + r / 12 K <- 300000 L <- 20 N <- 12*L n <- 1:N rataKredytu <- K * rr ^ N * (rr - 1) / (rr ^ N - 1) zadluzenie <- K * (rr ^ N - rr ^ n) / (rr ^ N - 1) odsetki <- K * (rr ^ N - rr ^ ( n - 1)) / (rr ^ N - 1) * (rr - 1) rataKapitalu <- rataKredytu - odsetki kredyt <- cbind(rataKapitalu, odsetki, rataKre...
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community_based_features.R
require(tidyverse) require(igraph) require(rex) require(datasets) require(dplyr) require(purrr) require(stringr) require(iterators) pkgs <- readRDS("pkgs_functions_with_syntax_feature.RDS") comm <- readRDS("cran_community_20190518.RDS") style_regexes <- list( "alllowercase" = rex(start, one_or_more(rex(one_of(l...
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data_url <- "C:/Users/mikael.herve/Documents/R/household_power_consumption.txt" class <- c(Voltage="numeric", Global_active_power="numeric",Global_intensity="numeric",Sub_metering_1="numeric",Sub_metering_2="numeric",Sub_metering_3="numeric",Global_reactive_power="numeric") origin <-read.table(data_url, header=TRUE...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/searchLinesAtGivenSlope.R \name{.insp1dimByClustering} \alias{.insp1dimByClustering} \title{Segment (1-dim vector) 'dat' into clusters} \usage{ .insp1dimByClustering( dat, automClu = TRUE, cluChar = TRUE, silent = FALSE, debug = FAL...
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###Team Stats ## Server library(shiny) library(ggplot2) library(plotly) ##Read in a data set that is saved to the same folder teamStats <- read.csv("All_Schools_Team_Stats_Post2000.csv") shinyServer(function(input, output) { #Put reactive something here for manipulating the data filte...
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library(rvest) library(XML) library(magrittr) library(rJava) library(tm) library(SnowballC) library(scales) library(wordcloud) library(RWeka) library(textir) library(data.table) library(stringr) library(slam) library(ggplot2) library(syuzhet) library(reshape2) library(dplyr) library(lubridate) librar...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cc_int.R \docType{data} \name{cc_severe} \alias{cc_severe} \title{HCC to severity group mapping - Table 6} \format{ An object of class \code{tbl_df} (inherits from \code{tbl}, \code{data.frame}) with 8 rows and 3 columns \describe{ ...
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library(maps) library(ggplot2) feb13 <- read.csv("delays/delays-feb-13-2007.csv", header = T, stringsAsFactors = F) # 1. Texas Plane flights texas <- map_data("state", "texas") texmap <- c( geom_polygon(data = texas, colour = "grey70", fill = NA), scale_x_continuous("", limits = c(-107, -93)), scale_y_continu...
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databricks_execute.R
#' #' Remote execution of commands on a Databricks cluster. #' #' This function sends commands to an execution context on an existing #' Databricks cluster via REST API. It requires a context_id from #' \code{create_execution_context}. Commands must be compatible with the #' language of the execution context - 'r', '...
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setwd("/Volumes/HD3/NGS/G_RNASeq") samples = read.csv("samples.csv", stringsAsFactors=FALSE) genome = "/Volumes/HD3/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa" gf = "/Volumes/HD3/NGS/G_RNASeq/Cuffmerge/merged.gtf" rm(testfiles) testfiles = '' cuff_labels = '' for(i in seq_len(nrow(samples))) { lib = samples...
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teste_variablen_in_tibble.R
library(tidyverse) # library(tibbletime) # library(lubridate) # library(reshape2) #require(stringr) myfunc <- function(par){ result <- ifelse(par=="JA", 1, 0 ) return(result) } myfunc("N") # get first observation for each Species in iris data -- base R mini_iris <- iris[c(1, 51, 101), ] # gather Sepal.Length, S...
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plot_sfs.R
.libPaths("~/groupdirs/SCIENCE-BIO-popgen_course-project/Group6_Simulations1/software/Rlib") library(optparse) # Input arguements option_list <- list( make_option("--path", type="character", help="path to .obs file"), make_option("--id", type="character", help="Id for output figures. Will return sfs_id.png")) ...
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Going_through_chapter_4.R
setwd("/Users/anne-linethomsen/Documents/R/ExperimentalMethods/Chapter 5") install.packages("car") install.packages("ggplot2") install.packages("pastecs") install.packages("psych") library(tidyverse) #I import the data: festivalData <- read.delim("DownloadFestival.dat", header = TRUE) #I tell ggplot to use my data wi...
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library(dplyr) library(readr) library(lubridate) household_power_consumption = read_delim("household_power_consumption.txt", ";", escape_double = FALSE, col_types = cols(Date = col_date(format = "%d/%m/%Y"), ...
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CST_Calibration.R
#'Forecast Calibration #' #'@author Verónica Torralba, \email{veronica.torralba@bsc.es} #'@author Bert Van Schaeybroeck, \email{bertvs@meteo.be} #'@description Five types of member-by-member bias correction can be performed. #'The \code{"bias"} method corrects the bias only, the \code{"evmos"} method #'applies a va...
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# get IAT for each model # load packages etc library(tidyverse) library(here) library(data.table) library(glue) source(here("analysis/words/10_IAT_analyses/scripts/IAT_utils.R")) # Outfile ES_OUTFILE <- here("data/processed/iat/other/iat_es_by_model.csv") # Model paths KIDBOOK_FULL_PATH <- here("data/processed/iat/...
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alphaPowCon <- function(power, n, mu, sd, n.sub=2, TreatMat = "Tukey", SubMat = "GrandMean", thetas = 1, alternative = c("two.sided", "less", "greater")){ Alpha <- function(alpha){ alpha <- as.numeric(alpha) PowCon(mu=mu, sd=sd, n = n, n.sub=n.sub, TreatMat= Tre...
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\name{EasyUpliftTree-package} \alias{EasyUpliftTree-package} \alias{EasyUpliftTree} \docType{package} \title{ Easy Uplift Tree Model for R } \description{ Easy Uplift Tree Model for R } \details{ \tabular{ll}{ Package: \tab EasyUpliftTree\cr Type: \tab Package\cr Version: \tab 0.0.2\cr Date: \tab 2013-02-24\cr License:...
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## Reading the Data hpc=read.table("./data/household_power_consumption.txt",header=TRUE,check.names=FALSE,as.is=TRUE, sep=";") ## Selecting only the Days that are of our interest hpc1<-hpc[which(hpc$Date =="1/2/2007" | hpc$Date =="2/2/2007"), ] ## concatenate the dates and time hpc1$NewDate<-apply(hpc1[,c('Date', 'Ti...
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combined_rr_pa_pa <- function(ind_pa,ind_ap){ # Replace NaNs with 1 ind_ap[is.na(ind_ap)] <- 1 # Replace Na with 1 ind_pa[is.na(ind_pa)] <- 1 # remove common columns from ap ind_ap <- dplyr::select(ind_ap, -c(sex, age, age_cat)) # join pa and ap ind datasets ind <- left_join(ind_pa, ind_ap, ...
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genericApply <- function(mat, margin, func, ..., nthread=1, clutype="PSOCK") { if(nthread <= 1) return(apply(mat,margin,func,...)) cl <- parallel::makeCluster(nthread,type=clutype) ret <- tryCatch(parallel::parApply(cl,mat,margin,func,...), finally=parallel::stopCluster(cl)...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/testing.R \name{boxplot_cov} \alias{boxplot_cov} \title{Create rmse boxplots to compare covairance models} \usage{ boxplot_cov(function_name, k, design_type, n, cov = "all", m = 20) } \arguments{ \item{function_name}{name of the testing funct...
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pollution <- read.csv("./data/avgpm25.csv", colClasses = c("numeric", "character", "factor", "numeric","numeric")) head(pollution) summary(pollution$pm25) boxplot(pollution$pm25, col ="blue") abline(h=12) hist(pollution$pm25, col="green", breaks=100) rug(pollution$pm25) abline(v=12, lwd=2) abline(v=median(pollution$pm...
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filesPath <- "C:\\Users\\msunkpal\\Desktop\\R_Final\\UCI HAR Dataset" # packages loaded are: dplyr and tidyr #Reading trainings files trainX <- read.table(file.path(filesPath, "train","X_train.txt")) XtrainData <- tbl_df(trainX) trainy <- read.table(file.path(filesPath, "train","y_train.txt")) ytrainData <- t...
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# Enter columns as calculated by DumpCoast program x=c(40.02177855743041,20.926887304365344,11.364379535864254,6.435809731800157,3.7523206497028117,2.268029441545984,1.4504876804847864,0.8834338574652224,0.6043891952733216) y=c(92.62456926247125,88.59415989750448,81.57066534732749,72.09660001403037,61.82840478155156,51...
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Project1 = read.csv(file="~/Documents/R Projects/train.csv",head=TRUE) test=read.csv(file="~/Documents/R Projects/test.csv",head=TRUE) train <- Project1 attach(train) plot(revenue,P1,col='1',pch=16) points(revenue,P2,col='2',pch=16) points(revenue,P3,col='3',pch=15) points(revenue,P4,col='4',pch=15) points(revenue,P5,c...
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# By default, the file size limit is 5MB. It can be changed by # setting this option. Here we'll raise limit to 9MB. require(googleVis) require(shiny) require(plotly) ## Prepare data to be displayed library(RCurl) options(shiny.maxRequestSize = 9*1024^2) shinyServer(function(input, output) { output$contents <- rende...
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#' A function to get the closest value from a vector #' @export closest <- function(x, y) { xy <- abs(x - y) closest <- which(xy == min(xy)) names(closest) <- names(y) return(closest) }
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# Hello, world! # # This is an example function named 'hello' # which prints 'Hello, world!'. # # You can learn more about package authoring with RStudio at: # # http://r-pkgs.had.co.nz/ # # Some useful keyboard shortcuts for package authoring: # # Build and Reload Package: 'Ctrl + Shift + B' # Check Package: ...
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# Die Intelligenz des Programms - der Ausführer. # Entscheidet anhand der Inputtabelle, welche Modelle mit welchen Daten aufgerufen werden. if (exists("master") == F) { master <- new.env() } # FUNKTION 1: Entscheidung über Modell # !!!! Unbedingt mit TRY aufrufen !!!! # IN: Eine Zeile des Steuerungs-Dataframes mast...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/workdocs_operations.R \name{workdocs_describe_document_versions} \alias{workdocs_describe_document_versions} \title{Retrieves the document versions for the specified document} \usage{ workdocs_describe_document_versions( AuthenticationToken...
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# This script creates plot4 # Set Working Directory setwd("C:/Users/kareem.gamgoum/Desktop/DataScience/Course 4 - Exploratory Data Analysis/Course Project 1") # Load in the data rawdata <- read.table("household_power_consumption.txt", header=TRUE, sep=";", na.strings = "?") # Create DateTime variable raw...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/02-near_gage_lag.R \name{find_lag_time} \alias{find_lag_time} \title{Find lag time to the nearest gage} \usage{ find_lag_time(rm, print = F) } \arguments{ \item{rm}{--numeric-- river mile, miles downstream from Lees Ferry} \item{print}{print...
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# Load the data source("load-data.R") data_subset <- load_data() # Creates figure 1 png(filename="figure1.png", width=480, height=480) hist(data_subset$Global_active_power, col="red", xlab="Global Active Power (kilowatts)", main="Global Active Power") dev.off()
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#--- with TBP and Pol2 gff_file <- "/Users/Pooja/Documents/Data-Analysis/Others/Reference_Annotation/An/A_nidulans_FGSC_A4_version_s10-m04-r07_features.gff" list_1 <- read_delim(pipe("pbpaste"), delim="\t", col_names =FALSE) #-- plot sorted according to this list, provide expression value as well list_2 <- read_delim(...
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#Title : 707 Project - Gradient Boosting Algorithm #@Author : Sanjana Rajagopala #Start Date : November 19, 2018 #Load the required libraries library(caret) library(dplyr) library(arules) library(klaR) library(tictoc) library(mlbench) library(pROC) library(gbm) library(ROSE) library(rpart) #############...
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rm(list=ls()) file <- "./data/household_power_consumption.txt" #read in specified file df <- read.table(file, header = TRUE, sep = ";", na.strings = "?") #convert date to date type df$Date <- as.Date(df$Date, format = "%d/%m/%Y") #keep only data for specific dates df <- subset(df, Date == "2007-02-01" | Date == "200...
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# Coursera JHPH Data Science # 08 - Pratical Machine Learning # Week 2 | Lecture 5 - Basic preprocessing # # Joe Nguyen | 13 Nov, 2015 # Change working directory dirBase <- "/home/joe/Documents/01-coursera/01-data-science" dirWorking <- "/08-practical-ml" setwd(file.path(dirBase, dirWorking)) rm(list = ls()) library...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/render-index.R \name{index.cell_label} \alias{index.cell_label} \title{Generate an index from a label object} \usage{ \method{index}{cell_label}(object, id = "tangram", key.len = 4, ...) } \arguments{ \item{object}{cell; The cell for indexing...
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#' Extracts playuer log information only for the duration of the quest #' #' @param quest_set Important because of the information about the set in which quest took place #' player_log_quest = function(quest_set, trial_sets = NULL, quest = NULL, quest_order_session = NULL, include_teleport = T){ if(is.null(trial_se...
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##Data Science - Johns Hopkins University ##coursera ## course 2 - R ##week1 x<- list(aardvark=1:5) # print where name start with a x$a # print where the name exactly equal to a x[["a"]] #print where name start with a x[["a",exact=FALSE]]
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/paws.autoscaling_operations.R \name{record_lifecycle_action_heartbeat} \alias{record_lifecycle_action_heartbeat} \title{Records a heartbeat for the lifecycle action associated with the specified token or instance} \usage{ record_lifecycle_act...
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context("clusterSingle") source("create_objects.R") test_that("`clusterSingle` works with matrix, ClusterExperiment objects, and SummarizedExperiments", { clustNothing <- clusterSingle(mat, clusterFunction="pam", subsample=FALSE, sequential=FALSE, ...
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# Args: filename, name args <- commandArgs(trailingOnly=T) filename <- args[1] print(paste("Reading from:", filename)) data <- read.table(args[1]) source("plotDiagram.R") pdf(paste(filename,".pdf", sep="")) plotDiagram(args[2], data) dev.off()
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library(RMySQL) library(stringr) ## Get the data in R: con <- dbConnect(MySQL(), host = "localhost", port = 3306, user = "root", password = "qwertz", dbname = "basecamp") quer <- dbSendQuery(con, "SELECT * FROM abstract_set") df <- fetch(quer, n = -1) dbClearResult(quer) ...
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## after https://www.rpubs.com/spoonerf/countrymapggplot2 library(maptools) library(raster) library(ggplot2) library(rgdal) library(plyr) ## download Spain shapefile data spain<-getData("GADM",country="ES",level=0) ## make base map esp<-ggplot()+geom_polygon(data=spain,aes(x=long,y=lat,group=group))+coord_fixed(1....
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rm(list=ls()) #setting working directory setwd("D:/Data Science/Abzooba") getwd() #Loading important libraries library(rpart) library(C50) library(randomForest) library(class) library(e1071) library(caret) library(boot) #Loading data sets train<-read.csv("Training Data.csv", header = T) test<-read.csv("Test Data.cs...
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install.packages("tidyverse") install.packages("foreign") library(tidyverse) library(foreign) data <- read_csv("./DevEcosystem 20 external data sharing/2020_sharing_data_outside.csv") qre <- read_csv("./DevEcosystem 20 external data sharing/DevEcosystem 2020 questions_outside.csv") data <- data %>% mutate(years_exp...
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#' Differential TAD boundary detection #' #' @import dplyr #' @import magrittr #' @import PRIMME #' @import ggplot2 #' @param cont_mat1 Contact matrix in either sparse 3 column, n x n or #' n x (n+3) form where the first three columns are coordinates in BED format. #' See "Input_Data" vignette for more information. #...
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#' Goodman and Kruskal's lambda #' #' Computes Goodman and Kruskal's lambda for given table. #' @param table a \code{table} of two variables or a \code{data.frame} representation of the cross-table of the two variables without marginals #' @param direction numeric value of \code{c(0, 1, 2)} where 1 means the lambda val...
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library(tidyverse) library(scales) forecast <- read_rds("results/forecast.RDS") cpi <- read_rds("results/cpi.RDS") gdp <- read_rds("results/gdp.RDS") res <- list() cpi <- forecast %>% filter(indicator == "cpi") %>% select(date, year, quarter, base) %>% arrange(year, quarter, date) %>% group_by(year, quarter) ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot.R \name{plot_map_wqis} \alias{plot_map_wqis} \title{Plot Map of Water Quality Index Categories.} \usage{ plot_map_wqis(data, x = "Long", y = "Lat", size = 3, shape = 21, keep = NULL, input_proj = NULL) } \arguments{ \item{data}{A data....
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library(tidyverse) library(sf) library(terra) library(maptiles) library(mapview) library(leaflet) library(htmltools) library(leafem) library(crosstalk) library(DT) ## CHALLENGE 1 - Plots # Plotting is still important. Let's warm-up by plotting some geospatial data. # 1. GIS data (continuous variable) natura2000 <- ...
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library(GenomicRanges) library(rtracklayer) library(fmsb) library(tidyverse) library(rcartocolor) load("data/fig1/SevenClassGenomeModel.Rdata") genome = read.delim("/Users/streeck/Genomes/DmelBDGP6.91/chrNameLength.txt", header = F, stringsAsFactors = F) genome = genome[1:7,] gr = GRanges(genome[,1], IRanges(1, as.in...
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set.seed(0) mu = 0.01; L = 1; kappa = L/mu n = 100 D = runif(n); D = 10^D; Dmin = min(D); Dmax = max(D) D = (D-Dmin) / (Dmax-Dmin) D = mu + D*(L-mu) A = diag(D) x0 = runif(n, 0, 1) x_star = rep(0, 100) f <- function(x) { 0.5*t(x) %*% A %*% x } df <- function(x) { A %*% x } GradientDescent <- function(x0, x_star...
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# Purpose: Basic score test # Updated: 2020/10/03 #' Partition Data #' #' Partition y and X according to the missingness pattern of g. #' #' @param e Numeric residual vector. #' @param g Genotype vector. #' @param X Model matrix of covariates. #' @return List containing: #' \itemize{ #' \item "g_obs", observed ge...
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## Put comments here that give an overall description of what your ## functions do ## makeCacheMatrix() and cacheSolve() are designed to compute ## the inverse of a matrix and store it in a cache so as to prevent ## un-necessary re-computation ## Write a short comment describing this function ## This function initil...
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#Read in all data from WD #colClass doesn't seem to like numeric for this data so using character (don't want any factors) Data<-read.csv2("./household_power_consumption.txt", na.strings = "?",colClasses=c("character")) #subset data and replace large file in memory with filtered set DataDay1<-subset(Data, Date=="1/2...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/posixt.R \name{date-zone} \alias{date-zone} \alias{date_zone} \alias{date_set_zone} \title{Get or set the time zone} \usage{ date_zone(x) date_set_zone(x, zone) } \arguments{ \item{x}{\verb{[POSIXct / POSIXlt]} A date-time vector.} \item{z...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/CovarianceMatrix.R \name{CovMat.Design} \alias{CovMat.Design} \title{covariance matrix for the multivariate normal distributed variables} \usage{ CovMat.Design(K, J, I, sigma.1.q, sigma.2.q = NULL, sigma.3.q) } \arguments{ \item{K}{n...
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#' Species data. #' #' Data on species captured at the Portal Project #' #' @source Portal Project Teaching Database, #' \doi{10.6084/m9.figshare.1314459} #' @format A data frame with columns: #' \describe{ #' \item{species_id}{Species identifier} #' \item{genus}{The genus of the species} #' \item{species}{The latin s...
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##################################################### ## Vamos a preparar varias gráficas con los datos ##################################################### ## Cargar librerias ##### pacman::p_load(data.table, here, ggplot2, hrbrthemes, patchwork, ggtext) ## Set theme #### theme_set(theme_ipsum_rc()) ...
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###Functions for Climmob Reporting Analysis #' Validate the class of objects generated in the tryCatch(s) any_error <- function(x){ isTRUE("error" %in% class(x)) } #' Runs specific lines of the code source2 <- function(file, start, end, ...) { file.lines <- scan(file, what=character(), skip=start-1, nlines=end-s...
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#' Plot #' #' This function plots blm models #' #' @param x An objct of class blm #' @param fit Should target variables (y axis) be plotted from fitted or data values #' @param newData for plot of new predicted target variable values, add new Data and assign fit = TRUE #' @param ... Additifonal data, #' #' @return...
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server <- function(input, output, session) { # Login ------------------------------------------------------------------- # Call login module supplying data frame, user and password cols # and reactive trigger credentials <- callModule( shinyauthr::login, id = "login", data = user_base, us...
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library(Rook) hello_fun <- function(env) { res <- Rook::Response$new() res$write("<html>ヮ<head><title>HelloWorld</title></head>・n<body>・n") res$write("<h1>Hello World</h1>・n") res$write("</body>・n</html>・n") res$finish() } # rk <- Rhttpd$new() rk$start(quiet = TRUE) rk$add(app = hello_fun, nam...
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rm(list=ls()) # clean up the workspace # ******************************************************************* # Constructing priors on 'g' (genartion time) and # 'u' (per-generation mutation rate) # ******************************************************************* # generation prior construction m <- 29.5; v <- (...
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plot.music21.base.Music21Object <- function(x, ...) { env <- reticulate::import("music21.environment") env$set('graphicsPath', Sys.which("lilypond")[1]) img <- x$write("lily.png") print(magick::image_read(img)) invisible(img) } #' Prints music21 generic object #' #' Uses show method from music21 #' #' @param...
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#Day_3 head(faithful) eruption.lm <- lm(eruptions ~ waiting, data = faithful) summary(eruption.lm) slope <- round(eruption.lm$coef[2], 3) p.val = 0.001 r2 <- round(summary(eruption.lm)$r.squared, 3) ggplot(data = faithful, aes(x = waiting, y = eruptions)) + geom_point() + annotate("text", x = 45, y = 5, label...
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context("test utility functions") test_that('strMultiMatch with and without dropping empties', { expect_equal(strMultiMatch(pattern="jack", text=c("not", "here")), list(character(), character())) expect_equal(strMultiMatch(pattern="(jack)", text=c("not", "here")), list(character(), character())) expect_equal(st...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/caricRture.R \name{curve_it} \alias{curve_it} \title{'Curvify' polygon-based objects.} \usage{ curve_it(spdf,s) spdf %>% curve_it(s) } \arguments{ \item{s}{\code{shape} parameter as in \link[graphics]{xspline}} \item{spdf}{a \link[sp]{Spatia...
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set1 <- "hsl(29, 69%, 34%)" set2 <- "hsl(205, 82%, 73%)" set3 <- "hsl(297, 77%, 47%)" set4 <- "hsl(35, 100%, 54%)" set5 <- "hsl(0, 76%, 49%)" set6 <- "hsl(60, 88%, 60%)" set7 <- "hsl(111, 74%, 39%)" set8 <- "hsl(218, 62%, 33%)" colour_sets <- c(set1,set2,set3,set4,set5,set6,set7,set8) colour_label <- c("Brown","Light b...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Depth_Outlier_Funcs.R \name{bootstrap_C} \alias{bootstrap_C} \title{Bootstrap a cutoff value to identify anomalies} \usage{ bootstrap_C(coeff, d.method, c.method, alpha, B) } \arguments{ \item{coeff}{A dataframe of coefficients of interest. T...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/demographics.R \name{playlist_demographics} \alias{playlist_demographics} \title{Playlist Demographic Data} \usage{ playlist_demographics(playlistId = NULL, ...) } \arguments{ \item{playlistId}{Required. String. Id of YouTube playlist.} \ite...
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# Decision trees example library(tidymodels) library(baguette) library(rules) library(workflowsets) data(concrete, package = "modeldata") glimpse(concrete) concrete <- concrete %>% group_by(cement, blast_furnace_slag, fly_ash, water, superplasticizer, coarse_aggregate, fine_aggregate, age) %>% summari...
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library(saeSim) ### Name: sim_gen ### Title: Generation component ### Aliases: sim_gen sim_gen_generic ### ** Examples # Data setup for a mixed model sim_base() %>% sim_gen_x() %>% sim_gen_v() %>% sim_gen_e() # Adding contamination in the model error sim_base() %>% sim_gen_x() %>% sim_gen_v() %>% sim_gen_e() %>% si...
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library(Rsafd) # Generating random samples GWN <- rnorm(1024) CWN <- rcauchy(1024) par(mfrow=c(2,1)) plot(GWN,type="l") title("Sequential plot of a standard Gaussian sample") plot(CWN,type="l") title("Sequential plot of a standard Cauchy sample") par(mfrow=c(1,1)) # Notice that the relative size of ex...
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library(tidyverse) library(USAboundaries) library(sf) hpi <- read_csv("https://github.com/rfordatascience/tidytuesday/raw/master/data/2019/2019-02-05/state_hpi.csv") now <- hpi %>% filter(year == 2001, month == 11) %>% select(state, year_now = year, price_index_now = price_index) joi...
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exons <- read.table("/Users/kraigrs/Wittkopp/Simulations/SNPs_in_const.txt",header=FALSE,sep="\t"); lengths <- exons[,3]-exons[,2]; exons <- cbind(exons,lengths); exprn <- read.table("/Users/kraigrs/Wittkopp/Simulations/zhr_z30_exons_expression.txt",sep="\t"); exons <- merge(exons,exprn,by.x="V8",by.y="V1"); tiled_e...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/selector.R \name{SelectControls} \alias{SelectControls} \title{Selection of the optimal set of controls} \usage{ SelectControls(genotypeMatrix, SVDReference, caseCounts, minLambda = 0.75, softMinLambda = 0.9, softMaxLambda = 1.05, maxLamb...
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library(reschola) library(tidyverse) library(here)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/til_map_distributions_functions.R \name{build_tm_distplot_tbl} \alias{build_tm_distplot_tbl} \title{Build Tilmap Distplot Tibble} \usage{ build_tm_distplot_tbl(tbl, id, scale_method) } \arguments{ \item{tbl}{A tibble with columns sample_id, s...
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## Set URL baseurl <- "https://www.glassdoor.com/Reviews/" sort <- ".htm?sort.sortType=RD&sort.ascending=true" totalreviews <- read_html(paste(baseurl, company, sort, sep="")) %>% html_nodes(".margBot.minor") %>% html_text() %>% sub(" reviews", "", .) %>% sub(",", "", .) %>% as.integer() maxresu...
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# stochastic, short term forecast, # lines begining with # are comments and can be put anywhere # # # Specification of year range # 1. first year for inclusion in mean # 2. second year for inclusion in mean # 3. include variance. 1=TRUE, 0=FALSE ################################################### # Input options<-c(...
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# tidyr and dplyr、 install.packages("tidyr") # install the package library(tidyr) install.packages("dplyr") # install the package library(dplyr) germination <- read.csv("Germination.csv", sep = ";") head(germination) # subset rows germinSR <- filter(germination, Species == 'SR') # select columns germin_clean ...
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# Напишите функцию filter.expensive.available, которая принимает на вход products (объект типа data.table) и вектор названий брендов, # и возвращает только те строчки, которые соответствуют товарам, цена которых больше или равна 5000 рублей, # которые доступны на складе и принадлежат одному из переданных брендов. fil...
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# # Author: Yu Fen # Date: Decemeber 6, 2019 # Purpose: Visualize the distribution of sale price and waterfront # # load necessary libraries ---- # install.packages("tidyverse") library(tidyverse) # set working directory ---- setwd("~/flatiron/project/housing_prices_project/") # load necessary data ---- pr...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/expanding_interaction_matrix.R \name{expand_matrix} \alias{expand_matrix} \title{Expand a summarised interaction matrix} \usage{ expand_matrix(X, r.names = rownames(X), MARGIN = 1) } \arguments{ \item{X}{A matrix or data frame representing th...
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library(urca) ### Name: plot-methods ### Title: Methods for Function plot in Package urca ### Aliases: plot plot-methods plot,ur.ers,missing-method ### plot,ur.kpss,missing-method plot,ca.jo,missing-method ### plot,ca.po,missing-method plot,ur.pp,missing-method ### plot,ur.sp,missing-method plot,ur.za,missing-m...
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#' Neural network parameters #' #' These functions generate parameters that are useful for neural network models. #' @inheritParams Laplace #' @details #' * `dropout()`: The parameter dropout rate. (See `parsnip:::mlp()`). #' #' * `epochs()`: The number of iterations of training. (See `parsnip:::mlp()`). #' #' * `hidde...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sheets_objects.R \name{BatchUpdateValuesByDataFilterRequest} \alias{BatchUpdateValuesByDataFilterRequest} \title{BatchUpdateValuesByDataFilterRequest Object} \usage{ BatchUpdateValuesByDataFilterRequest(valueInputOption = NULL, data = NULL, ...
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#' This gives estimation for delta #' @param data data of A,R,D sequence #' @export deltafunc = function(data){ ddeath_sim = data[,3] - c(0,data[,3][-length(data[,3])]) active_sim = c(1,data[,1][-length(data[,1])]) index7 = which(active_sim==0) index8 = c(1,index7) ddeath_sim = ddeath_sim[-index8] ...
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## pump: conjugate gamma-Poisson hierarchical model (BUGS Examples Vol. 1) library(dcmle) pump <- makeDcFit( multiply = "N", data = list( "N" = 10, "t" = c(94.3, 15.7, 62.9, 126, 5.24, 31.4, 1.05, 1.05, 2.1, 10.5), "x" = c(5, 1, 5, 14, 3, 19, 1, 1, 4, 22)), mo...
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\name{mnlogit} \alias{mnlogit} \alias{print.mnlogit} \alias{summary.mnlogit} \alias{predict.mnlogit} \alias{coef.mnlogit} \alias{print.est.stats} \alias{print.model.size} \alias{print.summary.mnlogit} \title{Fast estimation of multinomial logit models} \description{ Time and memory efficient estimation of multinomial...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/equation_9_7.R \name{equation_9_7} \alias{equation_9_7} \title{Baseline drift correction inspetion plot} \usage{ equation_9_7(dat, val1, val2) } \arguments{ \item{dat}{dataframe containing spline fits of respirometry data, this is the output ...