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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils.r \name{Bdiag} \alias{Bdiag} \title{Create block diagonal matrix} \usage{ Bdiag(A, k) } \arguments{ \item{A}{a numeric matrix forming each block.} \item{k}{an integer value indicating the number of blocks.} } \value{ Retu...
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rm(list = ls()) #reading file csv setwd ("C:/R_PROJECTS/EXPLORATORY_DATA") #install.packages ("readr") #library("readr") data <-read.csv2 ("C:/R_PROJECTS/EXPLORATORY_DATA/PROJECT1_EDA/household_power_consumption.txt", header = TRUE) data <- na.omit(data) #subsetting data subdata<-subset(data, data$Date=="1/2/2007"|d...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/validate_output.R \name{check_inds} \alias{check_inds} \title{Validate indicators for export} \usage{ check_inds(df) } \arguments{ \item{df}{HFR data framed created by \code{hfr_process_template()}} } \description{ Check whether there are any...
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source("./utils.R") source("./getMatrixByMag.R") source("./readData_new_1.R") source("./addPCAData.R") lacctop = cbind(top$LinearAcc0,top$LinearAcc1,top$LinearAcc2) gacctop = getGlobalAccByMag(top) plot(gacctop[200:1000,2],type="l",main="global top forward") cor(gacctop[200:1000,2],lacctop[200:1000,3]) plot(lacctop[20...
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flog.info(Sys.time()) generateDrugExposureReport <- function() { table_name<-"drug_exposure" data_tbl <- cdm_tbl(req_env$db_src, table_name) concept_tbl <- vocab_tbl(req_env$db_src, "concept") #writing to the final DQA Report fileConn<-file(paste(normalize_directory_path( g_config$reporting$site_director...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/api.R \name{qapi_connect} \alias{qapi_connect} \title{qapi_connect} \usage{ qapi_connect(org_id, api_key, auth_file = ".qapi_auth.R", verbose = FALSE) } \arguments{ \item{org_id}{Qualtrics org_id with which to get surveys} \item{api_key}{Qua...
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# mean of 100 random numbers mean(abs(rnorm(100))) # 10 random normal variables rnorm(10) x = c(1,2,4) q = c(x, x, 8) x[1] x[1:3] mean(x) sd(x) #Internal R datasets data() #Nile Dataset mean(Nile) sd(Nile) hist(Nile) hist(Nile, breaks = 20) #Functions oddcount = function(x){ k = 0 for(n in x){ if(n%%2 ==...
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# PLL Groundball Analysis # Sejin Kim # STAT 306 Sports Analytics # This script is for the gradient boosted regressor library(mosaic) library(dplyr) library(gbm) library(parallel) library(leaps) library(caret) library(MASS) # Read in data pll <- readRDS(url('https://github.com/kim3-sudo/pll_analysis/blob/main/data/p...
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################################################################### # prepare the data-matrix DM and replace the rownames ################################################################### # remove all objects before processing rm(list=ls()) # list of experiment names varieties <- c('fuji','golden', 'pinklady') mod...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/GO_terms.R \name{GO_terms} \alias{GO_terms} \title{GO Term Number from Gene Name} \usage{ GO_terms(filtered_info_df) } \arguments{ \item{filtered_info_df}{input data.frame which contain only one PDB entries} } \value{ Number of GO Terms which...
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new_ml_evaluator <- function(jobj, ..., class = character()) { structure( list( uid = invoke(jobj, "uid"), type = jobj_info(jobj)$class, param_map = ml_get_param_map(jobj), ..., .jobj = jobj ), class = c(class, "ml_evaluator") ) } #' @export spark_jobj.ml_evaluator <- func...
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readPriceVolChangesCVSSAS <- function(Portfolio, Date) { # browser() options$SASdir <- "S:/Risk/Projects/SAS/DATASTORE/SASIVaRProcm/" fileList <- list.files(options$SASdir) fileCorePortfolio <- paste(strsplit(toupper(Portfolio)," ")[[1]], sep = "", collapse = "-") indPortfolio <- grep(fileCorePortfolio, fileL...
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#analysis of dataset mtcars using mtcars library(dplyr) ?mtcars mtcars%>%summarise(mean(cyl)) mtcars%>%group_by(gear)%>%summarise(mean(am),mean(drat)) mtcars #structure of a data frame str(mtcars) dim(mtcars)#dimensions names(mtcars)#column names rownames(mtcars)#rownames summary(mtcars) #summary activities on mtcar...
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# # ggdendro/R/dendro_rpart.R by Andrie de Vries Copyright (C) 2011-2015 # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 or 3 of the License # (at your option). # # Thi...
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#' @export inflate <- function(x, n){ if (is.matrix(x)) { y <- apply(x, 2, function(x) rep(x, each = n)) } else if (is.data.frame(x)) { y <- as.data.frame(apply(x, 2, function(x) rep(x, each = n)), stringsAsFactors = FALSE) # copy class if different if (!isTRUE(base::all...
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### Subset BBS data for community trajectory analysis library(tidyverse) library(purrr) library(spdep) library(tmap) library(sf) library(vegclust) library(ecospat) ### Read in data ##### ## NA map na <- world %>% filter(continent == "North America") ## BBS 2017 Version # Append correct BioArk path info <- sessi...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ssm_operations.R \name{ssm_list_tags_for_resource} \alias{ssm_list_tags_for_resource} \title{Returns a list of the tags assigned to the specified resource} \usage{ ssm_list_tags_for_resource(ResourceType, ResourceId) } \arguments{ \item{Resou...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/expand.R \name{expand} \alias{expand} \title{expand grid with numerical component} \usage{ expand(formula, data, res, ...) } \arguments{ \item{formula}{a formula} \item{data}{the data set} \item{res}{numerical, the resolution for the numeri...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Pareto.R \name{ExposureCurvePareto} \alias{ExposureCurvePareto} \title{Exposure Curve from a Pareto severity distribution} \usage{ ExposureCurvePareto(x, scale, shape) } \arguments{ \item{x}{A positive real number - the claim amount...
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library(rdhs) ### Name: dhs_countries ### Title: API request of DHS Countries ### Aliases: dhs_countries ### ** Examples ## Not run: ##D # A common use for the countries API endpoint is to query which countries ##D # ask questions about a given topic. For example to find all countries that ##D # record data on ma...
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#import libraries library(shiny) library(shinydashboard) library(gganimate) library(ggplot2) library(stringr) library(gifski) #import RScripts for cleaning and recoding data source("newdash.R") linebreaks <- function(n){HTML(strrep(br(), n))} #define UI for application ui <- fluidPage( #define title and inputs...
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# name the database files in the "MonetDB" folder of the current working directory dbfolder <- paste0( getwd() , "/MonetDB" ) ####################################### # survey design for replicate weights # ####################################### # create survey design object with CPS design information # using exist...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/create_entity_all.R \name{create_entity_all} \alias{create_entity_all} \title{Quickly create all EML entity list objects.} \usage{ create_entity_all( meta_list, file_dir = getwd(), dataset_id, entity_numbers = NULL, skip_checks = FA...
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'logicopt' <- function(in_tt=NULL, n_in=0, n_out=0, find_dc=FALSE, input_sizes=NULL, exact_cover=TRUE, esp_file="", mode="espresso") ##########################...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/check.ordered.to.pa.R \name{check.ordered.to.pa} \alias{check.ordered.to.pa} \title{Verifies if there are ordered factor variables to be declared in the pa model building process} \usage{ check.ordered.to.pa(bn.structure, data.to.work) } \arg...
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# set up ----------------------------------------------------------------- library(tidyverse) library(lubridate) library(extrafont) loadfonts() # load data -------------------------------------------------------------- tuesdata <- tidytuesdayR::tt_load(2021, week = 27) df_data_raw <- tuesdata$animal_rescues gli...
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### Returns possible permutations of input permutations <- function(n) { if (n == 1) { return(matrix(1)) } else { sp <- permutations(n - 1) p <- nrow(sp) A <- matrix(nrow = n * p, ncol = n) for (i in 1:n) { A[(i - 1) * p + 1:p, ] <- cbind(i, sp + (sp >= i)) ...
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tm1_run_chore <- function(tm1_connection, chore = "") { tm1_adminhost <- tm1_connection$adminhost tm1_httpport <- tm1_connection$port tm1_auth_key <- tm1_connection$key tm1_ssl <- tm1_connection$ssl # added because some http does not know space chore <- gsub(" ", "%20", chore, fixed=TRUE) u1 ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/neptune_operations.R \name{neptune_describe_db_clusters} \alias{neptune_describe_db_clusters} \title{Returns information about provisioned DB clusters, and supports pagination} \usage{ neptune_describe_db_clusters( DBClusterIdentifier = NUL...
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library(sf) #library(tmap) library(rgdal) library(dplyr) library(xml2) library(XML) library(fpc) source("D:/Test/clusterKml2Polygon/readKML.r") # tfile <- list.files(zipfileDir, full.names = T, recursive = T, pattern = "zip") # tfile <- tfile[!grepl("TAB", tfile)] #tFileName <- tfile[1] kml2Tab = fun...
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set_age_comp = function(input, age_comp) { data = input$data par = input$par if(is.null(age_comp)){ data$age_comp_model_fleets = rep(1, data$n_fleets) # multinomial by default data$age_comp_model_indices = rep(1, data$n_indices) # multinomial by default } else { if(is.character(age_comp)){ # all use t...
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#' The Three Biggest Drawdowns in the portfolio #' #' Show the top 3 drawdowns including start and end dates, as well as #' decrease in returns during the drawdown period. All the information will be #' returned in a table, with all the numbers properly formatted. #' #' If the data set is not big enough that there are...
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setwd("C:/Users/amykr/Box Sync/Amy Krystosik's Files/Data Managment/redcap/ro1 lab results long") demo<-read.csv("R01CHIKVDENVProject_DATA_2017-08-17_1647_demo_merge.csv") demo_wide<-reshape(demo, direction = "wide", idvar = "ï..person_id", timevar = "redcap_event_name", sep = "_") demo_wide$gender_equal <- ifelse(demo...
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library(ggplot2) library(tidyverse) source("C:/wmd/R-util-functions/Simula_Likert.R") num_de_items=20 num_de_items2=16 escala_interpretada_1 = c("Muy malo","Malo","Regular","Bueno","Muy bueno") escala_interpretada_2 = c("Muy baja","Baja","Media","Alta","Muy Alta") entorno_familiar<-Simula_Likert(escala=1:5, ...
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getDataFrames = function() { if ((length(ls()) == 0) | (length(sapply(.GlobalEnv, is.data.frame)) == 0) | (any(sapply(.GlobalEnv, is.data.frame))==F)) data(iris) return(names(which(sapply(.GlobalEnv, is.data.frame)))) } rpivotAddin <- function() { library(shiny) library(rpivotTable) library(miniUI) lib...
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# ATF-FFL - United States Map Prep library(maps) library(mapproj) library(maptools) library(sp) library(fiftystater) library(dplyr) library(ggplot2) # Function: Capwords ---------------------------------------------------------- # from tolower() documentation capwords <- function(s, strict = FALSE) { cap <- functi...
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## makeCacheMatrix: Returns a list of functions that: ## Set the value of the matrix ## Get the value of the matrix ## Set the value of the matrix inverse ## Get the value of the matrix inverse makeCacheMatrix <- function(x = matrix()) { ## object to store the cached inverse and set to null store_inv <- NULL ## ...
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# Function "getEPC" # Used for Course Project 1 in "Exploratory Data Analysis". # Checks if object "epc" exists already. # If "epc" does not exist, downloads data from # https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2Fhousehold_power_consumption.zip # to working directory. Then unzips and # reads specific row...
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#' Check taxa match in two trees #' #' This function will check that taxonomic names in two trees match and if they do not, it will write the pruned trees to file. #' @param phy1 A phylogenetic tree in the class "phylo" #' @param phy2 A phylogenetic tree in the class "phylo" #' @param toFile If TRUE, it will save pr...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/facet_trelliscope.R \name{print.facet_trelliscope} \alias{print.facet_trelliscope} \title{Print facet trelliscope object} \usage{ \method{print}{facet_trelliscope}(x, ...) } \arguments{ \item{x}{plot object} \item{...}{ignored} } \descriptio...
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#' Calculating Sexual Shape Dimorphism #' #' This function directly calculates SShD. However it may be a poor estimator for unbalanced designs where there are more of one sex than the other, SShDLM() is more robust. #' @param Coords Two-dimensional array of coordinates from geometric morphometric analysis (see two.d.a...
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# Tests for testing out the functionality of the package, to make sure it isn't broken # some references # //https://github.com/msgpack/msgpack-c/blob/401460b7d99e51adc06194ceb458934b359d2139/include/msgpack/v1/adaptor/boost/msgpack_variant.hpp # //https://stackoverflow.com/questions/44725299/messagepack-c-how-t...
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# I confirm that the attached work is my own, except where clearly indicated in the text. ############################################### #CONFIDENCE INTERVALS & #COVERAGE FNS ############################################## b.ests.np <- function(B = 99, data, h = sd(data)/3, method) { #Purpose...
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survey <- read.delim("D:/Data-Science/09_Youth, technology, and social media/Raw survey responses.txt", header = TRUE, stringsAsFactors = FALSE) dim(survey) #580 1599
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/micRowave.R \name{readAbundanceFile} \alias{readAbundanceFile} \title{Read in an abundance file} \usage{ readAbundanceFile(abundanceFile) } \arguments{ \item{abundanceFile}{.tsv file with first column as feature. Columns are samples} } \value...
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# Combine alpha plots MS setwd("/Users/jamiemcdevitt-irwin/Documents/Git_Repos/McDevittIrwinetal_Kiritimati16S") getwd() library("ggplot2") # clear my environment rm(list=ls()) theme_set(theme_bw()) # load the data # May Alpha load("data/secondmito/lowreads_pruned/may_coral_alphamodel_combined.Rdata") # July Alp...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils_testers.R \name{is_date} \alias{is_date} \title{Checks if an object is a date object.} \usage{ is_date(x) } \arguments{ \item{x}{object to be tested.} } \value{ TRUE or FALSE depending on whether its arguments is a date object or not. }...
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context("conversion") spectrum <- unname(t(col2rgb(rainbow(10)))) reconvert <- function(data, space) { unname(round(convert_colour(convert_colour(data, 'rgb', space), space, 'rgb'))) } test_that("basic io works", { expect_error(convert_colour(spectrum, 'test', 'lab')) expect_error(convert_colour(spectrum, 'rgb',...
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# Nivel educativo de los integrantes del hogar ---------------------------- capitalHumano <- function(df_hogares, df_personas){ # Por personas educacion <- df_personas %>% select( c( CONSECUTIVO:A00, starts_with("p1708") ) ) %>% mutate( p1708 = replace_na(p1708, 1), p1708 = facto...
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library(nhdplusTools) library(tidyverse) library(dplyr) library(magrittr) #to download full nhdplusV2 on my computer nhdplus_path("D:/projects/TSS/data/NHDPlusNationalData/NHDPlusV21_National_Seamless_Flattened_Lower48.gdb") nhd_paths <- stage_national_data() network <- readRDS(nhd_paths$flowline) #to download nhd...
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predict.l0araxx <- function(obj, newx, type=c("link", "response", "coefficients", "class"), offset=NULL, ...) { np = dim(newx) type <- match.arg(type) # check offset if (is.null(offset)) { offset <- rep(0, np[1]) } else if (length(offset) != np[1]) { stop("length of offset not equal to the length of...
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library("atlantistools") file_fgs <- "SETasGroupsDem_NoCep.csv" file_init <- "INIT_VMPA_Jan2015" file_gen <- "outputSETAS" file_prod <- "outputSETASPROD" # utility functions ------------------------------------------------------------------------------- find_flags <- function(chars) { ids <- sort(unlist(lapply(c("do...
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options(stringsAsFactors = FALSE, warn = 1) args <- commandArgs(trailingOnly = TRUE) write("Running extractAllRowsWithOnlyOneSnpGenotype.R.", stdout()) # ######################################################## # Input Parameters: path <- "/home/benrancourt/Desktop/junjun/region45-SNPpipelineOct2018/reports/Le...
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library(shiny) library(leaflet) library(leaflet.extras) library(dplyr) # library(htmltools) # library(htmlwidgets) # # heatPlugin <- htmlDependency("Leaflet.heat", "99.99.99", # src = c(href = "http://leaflet.github.io/Leaflet.heat/dist/"), # script = "leaflet...
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################################################################################ # Plot of QTL overlap per chr. # Daniel Gatti # 2021-02-14 # dmgatti@coa.edu ################################################################################ library(GenomicRanges) library(tidyverse) # Set up base directories. base_dir = ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/create.R \name{load_grr} \alias{load_grr} \title{Load \code{grr} object from a template} \usage{ load_grr(template, modules = "all") } \arguments{ \item{template}{Name of template. Run \code{list_templates()} to see current options} \item{mo...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/main-functions.R \name{bin_cumulative} \alias{bin_cumulative} \title{bin_cumulative} \usage{ bin_cumulative(trials, prob) } \arguments{ \item{int}{integer trials} \item{int}{integer prob} } \value{ dataframe with bincum class } \description{...
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## This function creates a matrix and its inverse, which will be cached makeCacheMatrix <- function(x = matrix()) { a <- NULL set <- function(y) { x <<- y a <<- NULL } get <- function() x setinverse <- function(inverse) a <<- inverse getinverse <- function() a list(set = set, get = get, se...
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### This script is to study the use of social media of Genesee's competitor Small Town Brewery library(Rfacebook) library(httpuv) library(RCurl) library(rjson) library(httr) library(RColorBrewer) library(twitteR) library(tm) library(SnowballC) library(plyr) ################## Facebook #################### ## ## API ...
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library(shiny) ui = fluidPage( titlePanel('Central Limit Theorem'), sidebarLayout( sidebarPanel( sliderInput('n', 'Sample size:', min=1, max=50, step=1, value=1, animate=animationOptions(interval=300,loop=FALSE)) ), mainPanel( ...
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#' Functions to get median and IQR #' @description Functions to get median and IQR used by createNiceTable() printMedianQ13 <- function(vec) { q <- quantile(vec, na.rm=TRUE) sprintf("%.1f [%.1f-%.1f]", median(vec,na.rm=TRUE), q["25%"], q["75%"]) }
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/plsda.R \name{plsda_auroc_vip_compare} \alias{plsda_auroc_vip_compare} \title{Compare PLSDA auroc VIP results} \usage{ plsda_auroc_vip_compare(...) } \arguments{ \item{...}{Results of \link{nmr_data_analysis} to be combined. Give each result ...
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source(here::here("Automation/00_Functions_automation.R")) #install.packages("archive") library(archive) # assigning Drive credentials in the case the script is verified manually if (!"email" %in% ls()){ email <- "gatemonte@gmail.com" } # info country and N drive address ctr <- "Peru" dir_n <- "N:/COVerAGE-DB/A...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/util_FindCorrelatedRegions.R \name{FindCorrelatedRegions} \alias{FindCorrelatedRegions} \title{Find contiguous co-edited subregions.} \usage{ FindCorrelatedRegions( sites_df, featureType = c("site", "cpg"), minSites_int = 3 ) } \argumen...
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library(grid) library(ggplot2) library(readr) library(dplyr) candleGrob <- function(xc, yc, openc, closec, highc, lowc) { } candleGrobs <- function(x, y, open, close, high, low) { #x,y are the center of the candle rectangle #high,low define the top and bottom of the glyph #open/close can be in either order a...
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## Linear model for MSFT stock dataset ## # You can use the setwd() command to change your working directory. Examples below # Currently using identification for an account on studio.azureml-int.net # If you would like to see the web services published, please create an account there # and substitute in your identifi...
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#' --- #' title: 6101 Project 2 Final #' author: TeamBestTeam #' date: 31Oct17 #' output: #' html_document: #' toc: true #' highlight: haddock #' --- #'####################################### #http://rpubs.com/jassalak/TeamBestTeam_Proj2 #'####################################### #' ## Environ...
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library(balance) ### Name: vlr ### Title: Calculate Log-ratio Variance ### Aliases: vlr ### ** Examples library(balance) data(iris) x <- iris[,1:4] vlr(x)
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################### ### ### Rigidity Theory ### ### Leonard Mada ### ### draft v.0.1l-formatted ### Rigidity Theory ### Global Rigidity ################### ### 1D Rigidity ### ################### ### Satisfiability: # - let x be n positive integers; # - is there a set of coefficients b # with...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/listr.R \name{listr} \alias{listr} \alias{olistr} \title{Convert to list} \usage{ listr() olistr() } \value{ \code{listr()} returns an unordered markdown list \code{olistr()} returns an ordered markdown list } \description{ Convert selected...
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#### ### ### ## #### ### ### ## #### ### ### ## # Created by Marc-Olivier Beausoleil # 03 Nomvember 2020 # Why: Get the qqplot for any data # Output: # Requires: # NOTES: Inspired from a course named "Learning Statistics with R" from "The Great Courses" #### ### ### ## #### ### ### ## #### ### ### ## # Get the da...
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x <- read.csv("scores.csv", as.is = T) y <- read.csv("tournament.csv", as.is = T) x$rundiff <- x$teamscore - x$oppscore # Create Model lm.bb <- lm(rundiff ~ team + opponent + location, data = x) # Point Spread to Win Percentage Model x$winprob <- NA x$winprob[x$rundiff > 0] <- 1 x$winprob[x$rundiff < 0] <- 0 x$pred...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/granovagg.ds.R \name{granovagg.ds} \alias{granovagg.ds} \title{Elemental Graphic for Display of Dependent Sample Data} \usage{ granovagg.ds(data = NULL, revc = FALSE, main = "default_granova_title", xlab = NULL, ylab = NULL, conf.level = 0....
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######################################## #File: Problem Set 1 #Author: Nishidh Lad #Date: September 7,2017 ######################################## rm(list=ls(all=TRUE)) library(data.table) context1 <- fread('WAGE1.csv') summary(context1) lwage <- log(context1$wage) model1 <- lm(wage~educ, data=contex...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/stein-shrinkage.r \name{risk_stein} \alias{risk_stein} \title{Stein Risk function from Pang et al. (2009).} \usage{ risk_stein(N, K, var_feature, num_alphas = 101, t = -1) } \arguments{ \item{N}{the sample size.} \item{K}{the number of class...
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############################################################################ # ############################################################################ ## for the fullNamesTranslator fntFUN <- function(names, ...) { pattern <- "^(TCGA-[0-9]{2}-[0-9]{4})-([0-9]{2}[A-Z])[-]*(.*)"; gsub(pattern, "\\1,\\2,\\3", nam...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/TwoPart_MultiMS.R \name{subset_proteins} \alias{subset_proteins} \title{Subset proteins} \usage{ subset_proteins(mm_list, prot.info, prot_col_name) } \arguments{ \item{mm_list}{list of matrices for each experiment, length = number of datasets...
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context("Utilities") expect_aboutequal <- function(object,expected,digits=4,...){ ro <- round(object,digits) re <- round(expected,digits) expect_equivalent(ro,re,...) } ## test mean diff n <- 30 m <- 100 x <- rnorm(2*n) X <- matrix(rnorm(2*n*m),nc=m) largeX <- matrix(rnorm(2*n*10^5),nc=10^5) g <- rep(c(0,1...
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#The first function, makeCacheMatrix creates a special "matrix", which is really a list containing a function to #1set the value of the matrix #2get the value of the matrix #3set the value of the inverse #4get the value of the inverse makeCacheMatrix <- function(x = matrix()) { inv <- NULL set <- function(y){ ...
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remove(list = ls()) library("readxl") library("writexl") library(assertthat) library(dplyr) library(purrr) library(igraph) library(ggplot2) library(ggraph) library(ggmap) library(maps) getwd() Loc <- read_excel("countries_Location.xlsx") Loc <- data.frame(Loc) #Changed the excel file into a data frame colnames(Loc...
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\name{expmFrechet} \title{Frechet Derivative of the Matrix Exponential} \alias{expmFrechet} \encoding{UTF-8} \description{ Compute the Frechet (actually \sQuote{Fréchet}) derivative of the matrix exponential operator. } \usage{ expmFrechet(A, E, method = c("SPS", "blockEnlarge"), expm = TRUE) } \arguments{ \item{...
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#' Extract token from Oliver sign-in GET response #' #' @param response A response from a GET to one of the oliver Sign-in Domains containing a "poc.t" cookie. #' #' @return #' @export #' #' @examples extract_poc_token <- function(response) { dat_cookies <- httr::cookies(response) dat_cookies[dat_cookies$name...
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# Load required biconductor and CRAN packages require(BiocGenerics) # Enable only semi-serious parallel processing - only max of 2 cores suppressPackageStartupMessages(require("BiocParallel")) n.cores <- min(2, parallel::detectCores()) BiocParallel::register(BiocParallel::MulticoreParam(n.cores)) # Enable keeping on...
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library(tidyverse) library(readxl) ham_veri <- read_excel("/Users/cenkatlig/Super_Bilgisayar.xlsx") %>% tbl_df() # Then making the raw data smoother # It is provided to write separately on each line (originally, systems would sell 2 series) ara_veri <- ham_veri %>% slice(seq(1,nrow(.),by=2)) %>% c...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/performance.R \name{model_fun_no_rebal} \alias{model_fun_no_rebal} \title{identical to model_fun, except does not rebalance} \usage{ model_fun_no_rebal(vsn, model, namer = "ret", custom_rets = NULL) } \description{ identical to model...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/MetFragConfigR.R \name{MetFragConfig.CompToxCSV} \alias{MetFragConfig.CompToxCSV} \title{Create MetFrag Config Files with LocalCSV and Scoring Terms from CompTox MetFrag XLS Export} \usage{ MetFragConfig.CompToxCSV(mass, adduct_type, results_...
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##################################### #####Analytical Validity Evaluations# ##################################### eval<-function(data){ ####quantities of interest ####mean income by gender ####mean age by gender ####returns to schooling ###descriptive statistics income<-cbind(as.numeric(by(data$income,d...
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# Internal function that uses the implementation of Telfer written by Gary Powney GP_telfer <- function (taxa_data,time_periods,iterations=10,useIterations=TRUE,min_sq=5){ # Create a vector of all the years to include for (i in 1:length(row.names(time_periods))) { run<-time_periods[i,1]:time_periods[i,2] ...
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hiphop <- readLines("~/Desktop/R/data/hiphop1.txt"); hiphop hiphop1 <- str_replace_all(hiphop, "\\W", " "); hiphop1 #단어가 아닌 모든 것 hiphop2 <- extractNoun(hiphop1); hiphop2 wordcount <- table(unlist(hiphop2)); wordcount df_word <- as.data.frame(wordcount, stringsAsFactors = FALSE); head(df_word) df_word1 <- rename(df_word...
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#Function makes a scatter plot. Takes in 4 paramters: #The data to be made into a plot, the x variable, the y variable, the type of flower to be displayed build_scatter <- function(data, xvar = 'Petal.Length', yvar = 'Sepal.Length', flower = 'all') { #Filters down to match the selected flower. Only filters if all is ...
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library(Rcpp) sourceCpp("C:/Users/Jay/Desktop/CompRisk/R/cumh_ED.cpp") #sourceCpp("C:/Users/Jay/Desktop/CompRisk/R/cumh_IS.cpp") source("C:/Users/Jay/Desktop/CompRisk/R/Fit_Model.R") source("C:/Users/Jay/Desktop/CompRisk/R/Logliklihood.R") ### Raw data BCraw <- read.csv("C:/Users/jay/Desktop/New Era/July31-2017/July31-...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/timestreamwrite_operations.R \name{timestreamwrite_create_table} \alias{timestreamwrite_create_table} \title{Adds a new table to an existing database in your account} \usage{ timestreamwrite_create_table( DatabaseName, TableName, Retent...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/insert_na.R \name{insert_na} \alias{insert_na} \title{Add NA values to a dataframe} \usage{ insert_na(.dataset, columns, .p = 0.01, seed = 123) } \arguments{ \item{.dataset}{data frame.} \item{columns}{vector that indicates the name of the c...
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rm(list = ls()) prop.test(98, 162) #one tailed test with 90% confidence interval prop.test(98, 162, alt = "greater", conf.level = 0.90) #----------------------------- quakes[1:5,] mag <- quakes$mag mag[1:5] t.test(mag) t.test(mag, alternative = "greater", mu =4)
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### This is the SERVER file for our groundUP file ### library(shiny) source("fin_shiny_fxns2.R") shinyServer( function(input, output, session){ ##~~~~~~~~~~~~~~~~~~~~~~~~## ## VARIABLES HERE ## ##~~~~~~~~~~~~~~~~~~~~~~~~## phid <- reactiveValues() #reactive value to hold majority o...
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#' Conditional expression ($cond) #' #' Evaluates a boolean expression to return one #' of the two specified return expressions. #' #' @param test Expression which returns a boolean value. #' @param yes Return this if the test returns true. #' @param no Return this if the test returns false. #' #' @examples #' \dontru...