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source("~/GIT/utilities/R/lm_utils.R") source("~/GIT/utilities/R/mut_utils.R") library(stringr) ceres.17q2 <- read.table(gzfile("../../Data/gene_effect_17Q2.csv.gz"), header = T, sep = ",", row.names=1, check.names=F) ceres.18q3 <- t(read.table(gzfile("../../Data/gene_effect_18Q3.csv.gz"), header = T, sep = ",", row.n...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/wmesaclient.R \name{mesaDev} \alias{mesaDev} \title{Criar conexão com a mesa giratório do túnel de vento do IPT} \usage{ mesaDev(url = "localhost", port = 9596) } \arguments{ \item{url}{String com URL do servidor XML-RPC} \item{port}{Inteiro...
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rm(list=ls()) user=(Sys.info()[6]) Desktop=paste("C:/Users/",user,"/Desktop/",sep="") setwd(Desktop) dir.create(paste(Desktop,"/MEMS",sep="")) dir.create(paste(Desktop,"/MEMS/S6/NIC",sep="")) dir.create(paste(Desktop,"/MEMS/S6/NIC/Datasets",sep="")) home=paste(Desktop,"MEMS/S6/NIC/Datasets/",sep="") setwd(home) d...
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#! /usr/bin/env Rscript datasets <- c("syn","syn-I","syn-NL") #c("syn","syn-I","syn-NL","syn-I-NL") indices <- 1:15 models <- c("MSODVL") # c("TRUE","OD","ODLP","MSODTRUE","MSOD") for (dataset in datasets) { for (index in indices) { for (model in models) { job <- paste("S.",model,".",index, ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mpl_morphy_objects.R \name{PhyDat2Morphy} \alias{PhyDat2Morphy} \title{Initialize a Morphy Object from a \code{phyDat} object} \usage{ PhyDat2Morphy(phy) } \arguments{ \item{phy}{An object of class \code{\link{phyDat}}.} } \value{ A pointer t...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PASWR-package.R \docType{data} \name{Formula1} \alias{Formula1} \title{Pit Stop Times} \format{ A data frame with 10 observations on the following 3 variables: \describe{ \item{Race}{number corresponding to a race site} \item{Team1}{pit stop...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rptgam.R \name{rptgam} \alias{rptgam} \title{Repeatability estimates for random effect GAM models} \usage{ rptgam( formula = NULL, data = NULL, gamObj = NULL, rterms = NULL, gam_pars = NULL, bam_pars = NULL, nboot = 0, boot_ty...
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#Function to generate draws from the joint density of beta and sigma.sq lm.gprior <- function(y,X,g=dim(X)[1],nu0=1, s20=try(summary(lm(y~-1+X))$sigma^2,silent=TRUE), S=1000){ n<-dim(X)[1] ; p<-dim(X)[2] Hg<- (g/(g+1)) * X%*%solve(t(X)%*%X)%*%t(X) SSRg<- t(y)%...
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library(js) ### Name: coffee_compile ### Title: Coffee Script ### Aliases: coffee_compile coffee ### ** Examples # Hello world coffee_compile("square = (x) -> x * x") coffee_compile("square = (x) -> x * x", bare = TRUE) # Simple script demo <- readLines(system.file("example/demo.coffee", package = "js")) js <- cof...
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######################################################################################################## # Methylation of NEK2-associated probe by group ######################################################################################################## plot.meth.nek2 <- function(filename){ pdf(filename) plo...
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#' VIPER wrapper #' #' This function is a convenient wrapper for the [viper::viper()] function. #' #' @inheritParams .decoupler_mat_format #' @inheritParams .decoupler_network_format #' @inheritDotParams viper::viper -eset -regulon -minsize #' #' @return A long format tibble of the enrichment scores for each tf #' acr...
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## Methods for object of class "kvSparkData" - key-value pairs as Spark RDDs #' @export ddoInit.sparkDataConn <- function(obj, ...) { structure(list(), class="kvSparkData") } #' @export ddoInitConn.sparkDataConn <- function(obj, ...) { obj } #' @export requiredObjAttrs.kvSparkData <- function(obj) { list( ...
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sentiment analysis.R
library(readtext) library(tidytext) library(dplyr) library(stringr) library(tidyr) library(ggplot2) library(wordcloud) library(reshape2) # read in text jfk <- readtext("JFK first state of the union.txt") %>% unnest_tokens(word, text) obama <- readtext("obama first state of the union.txt") %>% unnest_tokens(word...
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At_tiles.data <- readRDS("data_complete.RData") # #LIBRARIES # source('functions_read_in_first.R') # if(!require("dplyr")){ install.packages("dplyr") } library(dplyr) # # Select Relevant Data # tags <- which.index(At_tiles.data,c('relative_meth','cytosinesCountCG', 'cytosin...
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\name{greycol} \alias{greycol} \alias{graycol} \title{ white-black color palette } \description{ Creates a vector of (n) contiguous colors from white/grey to black } \usage{ greycol(n = 100, interval = c(0.0, 0.7)) } \arguments{ \item{n }{number of colors. } \item{interval }{interval *to* where to interpol...
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#pca example #replicate this in your own adventure traveller Price <- c(6,7,6,5,7,6,5,6,3,1,2,5,2,3,1,2) Software <- c(5,3,4,7,7,4,7,5,5,3,6,7,4,5,6,3) Aesthetics <- c(3,2,4,1,5,2,2,4,6,7,6,7,5,6,5,7) Brand <- c(4,2,5,3,5,3,1,4,7,5,7,6,6,5,5,7) data <- data.frame(Price, Software, Aesthetics, Brand) #two type...
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#Copyright © 2016 RTE Réseau de transport d’électricité context("Function updateGeneralSettings") # Setup study ------------------------------------------------------------- path <- tempdir() # Unzip the study setup_study(path, sourcedir) # set simulation path in mode input opts <- antaresRead::setSimulationPath...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/loopit_2D3D.R \name{loopit_2D3D} \alias{loopit_2D3D} \title{Loopit 2D/3D} \usage{ loopit_2D3D(pts_seeded, romsobject, roms_slices = 1, start_slice = 1, domain = "2D", trajectories = FALSE, speed, runtime = 10, looping_time = 0.25, sedimen...
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library(RSelenium) library(rvest) library(plyr) library(dplyr) library(reshape2) library(stringi) library(stringr) library(ggplot2) # comments data is from http://sports.news.naver.com/gameCenter/textRelayFootball.nhn?category=amatch&tab=player_stats&gameId=20171010A01A001618 # in mac terminal: docker run -d -p 4445:...
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download_backfill_data <- function(){ library(plyr) # for rbind.fill library(dplyr) source("https://raw.githubusercontent.com/cmu-delphi/delphi-epidata/master/src/client/delphi_epidata.R") # Fetch data all_obs <- lapply(c("nat", paste0("hhs", 1:10)), function(region_val) { ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/fars_functions.R \name{fars_summarize_years} \alias{fars_summarize_years} \title{Summarize multiple years of motor vehicle crash data} \usage{ fars_summarize_years(years) } \arguments{ \item{years}{A string or integer vector giving the years ...
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chart_year_sexualMinority.R
# Views trends between year and the appearance frequency of sexual minorities library(dplyr) library(plotly) # Uses a line graph to view trendlines YearSexuality <- function(dataset) { # Get graphing summary plot.summary <- GSMtable(dataset) colnames(plot.summary) <- c("YEAR", "str_freq", "gsm_freq") # Cre...
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# # This is a Shiny web application. You can run the application by clicking # the 'Run App' button above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # # In the preamble, we will load any packages we want to use and possibly also # any functions or data sets that we...
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# Load labels feat_labs = read.table("UCI HAR Dataset/features.txt") act_labs = read.table("UCI HAR Dataset/activity_labels.txt") # Load train data.sources_train = list.files("UCI HAR Dataset/train/", pattern="*.txt$", full.names=TRUE, ignore.case=TRUE) sapply(data.sources_train, read.table...
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# 重点サンプリングの結果がなんか違うのでやり直してみる IS.fa_pre <- function(par){ f <- function(x, theta, par){ exp(theta*x)*dfas2(x, mu=par[1], sigma=par[2], lambda=par[3], delta=par[4]) } #weightを計算するためにMを計算する.99%,97.5%,95%をまとめて行う M1 <- integrate(f, -30, 30, theta=theta.val1, par=par)$value M25 <- int...
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#################################################################### # # # Sampling Functions # # # ############################################...
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fd_stan_main <- function(mres,name,nchains=6,niter=500,rerun=F,is_on_grid=F){ if(is_on_grid){ rerun=T nchains=1 name = paste0(name, 'grid_',paste0(sample(c(0:9, letters, LETTERS),10,replace=TRUE),collapse='')) } name = paste0(name,'.RData') library(rstan) dir = '../../cache/stanfit/' dir.create(...
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#' Color Palette Demonstration Plot #' #' Demonstration of color palettes in various kinds of statistical graphics. #' #' To demonstrate how different kinds of color palettes work in different #' kinds of statistical displays, \code{demoplot} provides a simple convenience #' interface to some base graphics with (most...
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Homework 7.R
set.seed(123) #make sure it's reproducable #PART 1 alb.data = read.csv("STAL data.csv", header=T) #breeding pair data #Calculates NLL assuming exponential growth #Input: growth rate (r), initial pop (N0), additional variance (CVadd), real data (alb.data) #Return: NLL getNLL = function(r, N0, CVadd, alb.data) ...
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Lab Week 9-3.R
pdf(file="half sphere.pdf") x <- matrix(rep(seq(-5, 5, length= 100),100),100,100) y <- t(x) f <- function(x, y) { r <- sqrt((25-x^2-y^2)*(25-x^2+-y^2>0)) } z <- f(x,y) z[z==0] <- NA persp(x[,1], y[1,], z, theta = 0, phi = 0, expand = 1, col = "red", xlab="x", ylab="y", zlab="z") contour(z) image(z) contour(z, add=TRUE...
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code1.R
wine = read.csv("wine.csv") str(wine) # 1 variable linear regression, price vs agst model1 = lm(Price ~ AGST, data=wine) summary(model1) # adjusted r-squared = adjust on independent variables, R-squared will decrease if you add a bad var model1$residuals # calculate the SSE SSE = sum(model1$residuals ^ 2) SSE ...
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methods.R
# SeqFrame - methods # # ############################################################################### ## so add a id column (the row.numbers), use it subset annotation, transfer to ## grangs and open genome browser todo: remove or hide id columne as row names ## in flowCore ## ------------------------------------...
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\name{sSpec-class} \docType{class} \alias{sSpec-class} \title{Class \code{"sSpec"}} \description{ A class to store the specifications of the kernel used to smooth moment conditions. } \section{Objects from the Class}{ Objects can be created by calls of the form \code{new("sSpec", ...)}. It is created by \code{\link{k...
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#' Outlier detection function #' @param x numeric vector #' @param z standardized threshold #' @return vector index of outliers #' @export #' @examples #' out(runif(10), 0.9) out <- function (x, z = 0.7) which(abs(scale(x, scale = TRUE, center = TRUE)) >= z)
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label_checker.R
library(imager) library(stringr) # Script that, given a directory of pictures and the date entitling their # labels .csv file, plots the pictures and their labels side-by-side. # Before running this script, set the working directory as the location of this # file. pictures_directory <- "pictures_to_label/" labels_dir...
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server.R
#################################################################################### ####### BFAST ####### SEPAL shiny application ####### FAO Open Foris SEPAL project ####### remi.dannunzio@fao.org - yelena.finegold@fao.org #################################################################################### #########...
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i2snake_fit.R
library(alr3) data(snake) names(snake) <- c('content', 'yield') attach(snake) yield.fit <- lm(yield ~ content) summary(yield.fit) plot(content, yield) abline(yield.fit, lwd=3, col='red') par(mfrow = c(2,2)) plot(yield.fit) qqPlot(yield.fit)
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JDE_Shubert3_JUL_07_2020.R
library('DEoptimR') Shubert3= function(x) { Num=length(x) fun=0 for (i in 1:Num) { for (j in 1:5) { fun = fun+ j * sin(((j + 1) * x[ i]) + j) } } return(fun) } # Global Minimum: 0 , domain=[-10,10] dim=30 RUNS=50 ITE=2000 NPAR=100 Bounds=10 Y=0;X=0 for(i in 1:RUNS) { JDE_R=JDEoptim(rep(-...
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brianpclare/SynetheticMedicareData
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final project synthetic data.R
# Synthetic Medicare Claims Data - not included in Github repo, over file size limit # Outpatient Claims - 154 MB file # https://www.cms.gov/Research-Statistics-Data-and-Systems/Downloadable-Public-Use-Files/SynPUFs/DESample01.html # Variable Guide # https://www.cms.gov/Research-Statistics-Data-and-Systems/Downloadab...
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dot-addSurvivalPredictions.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils_imputation.R \name{.addSurvivalPredictions} \alias{.addSurvivalPredictions} \title{Get predicted values from a survival model} \usage{ .addSurvivalPredictions(input) } \arguments{ \item{input}{data.table} } \value{ numeric vector of pre...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ConfRatio.R \name{ConfRatio} \alias{ConfRatio} \title{Confidence Interval of ratios} \usage{ ConfRatio(varratio, df.1, df.2, pval = 0.1) } \arguments{ \item{varratio}{a variance ratio} \item{df.1}{degree of freedom of denominator} \item{df....
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/zzzz.R \name{RocFun} \alias{RocFun} \title{ROC estimation function} \usage{ RocFun(U, D, M, bw = "NR", method, ktype) } \arguments{ \item{U}{The vector of grid points where the ROC curve is estimated.} \item{D}{The event indicator.} \item{M...
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# This is a development helper file. It hosts calls to help with the # documentation and package checking and to try out new functions. # load the devtools package require("devtools") # load/reload the bexis package functions load_all("rBExIS") # check package for consistency check("rBExIS") # Here start functions ...
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### Assignment 2, Coursera R Programming, 2014-04-25 ## These two functions are intended to compute and cache the inverse of a supplied square matrix. ## Caching can improve the speed of a script or program by preventing the need to perform a ## computation redundantly ## the makeCacheMatrix function creates a list o...
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% Copyright 2001 by Roger S. Bivand \name{cell2nb} \alias{cell2nb} \alias{mrc2vi} \alias{rookcell} \alias{queencell} \alias{vi2mrc} \title{Generate neighbours list for grid cells} \description{ The function generates a list of neighbours for a grid of cells. Helper functions are used to convert to and from the vector ...
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# # This is a Shiny web application. You can run the application by clicking # the 'Run App' button above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) library(ggplot2) library(Seurat) library(stringr) library(dplyr) library (gtools) li...
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library(kwb.hantush) ### Name: hantushDistancesBaseProps ### Title: Hantush distances & base properties: allows input of vector of ### x,y coordinates and also a vector for one of the base properties ### Aliases: hantushDistancesBaseProps ### ** Examples baseProps <- baseProperties( time = 2^(0:6), ...
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#*********************************************************************************** # # Maps Predicted Values and Clusters for modgam Objects # Copyright (C) 2016, The University of California, Irvine # # This library is free software: you can redistribute it and/or modify # it under the terms of the GNU General Publi...
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testlist <- list(x = c(-8399334L, 794034134L, NA, -54529L, -180L, 1291845631L, -1L, -1L, -1L, -1L, -1L, -16711681L, -1L, -687865865L, -2097153L, -1L, -65536L, 0L, -1L, -393258L, -2049L, -536871026L, -1L, -10726L, 803602431L, -1L, -10497L, -1L, -1L, -1L, -1L, -1L, -1L, -15060993L, 673513472L, 15728639L, -1L, -1L, -1...
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removeRowsAndColumns <- function(chart.matrix, rows.to.ignore = "", cols.to.ignore = "") { ## Get the individual headings from the input remove.rows <- as.vector(sapply(strsplit(rows.to.ignore, ","), function(x) gsub("^\\s+|\\s+$", "", x))) remove.cols <- as.vector(sapply(strsplit(cols.to.ignore, ","), func...
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library(RColorBrewer) jet.colors <- colorRampPalette(c("#00007F", "blue", "#007FFF", "cyan", "#7FFF7F", "yellow", "#FF7F00", "red", "#7F0000")) redblue.colors <- colorRampPalette(c("#67001F", "#B2182B", "#D6604D", "#F4A582", "#FDDBC7", "#F7F7F7", "#D1E5F0", "#92C5DE", "#4393C3", "#2166AC", "#053061")) r...
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library(ggplot2) # x축 displ, y축 hwy로 지정해 배경 생성 ggplot(data=mpg,aes(x=displ,y=hwy,color=drv))+ # 배경에 산점도 추가 geom_point( # 점 크기 지정 size=5 )+ #범위 지정 xlim(3,6)+ ylim(10,30)+ stat_smooth() head(mpg) ggplot(data=mpg,aes(x=cty,y=hwy,color=drv))+ geom_point()+ stat_smooth() str(midwest) ggplot(da...
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## ----setup, include=FALSE----------------------------------------------------- knitr::opts_chunk$set(echo = TRUE) ## ----load_column_definitions-------------------------------------------------- #load("data/county.hlth.rnks.columns.RData") data(county.hlth.rnks.columns.RData, package = "dc.chr.preventable.hospitaliz...
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#' Marimekkofy #' #' @param data dataframe #' @param xbucket x value #' @param ybucket y value #' @param weight weight value #' #' @return df #' @export Marimekkofy <- function(data, xbucket = "xbucket", ybucket = "ybucket", weight = NULL) { xmax...
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##THE BEER DEBATE PROJECT ---- # Objective- to get and clean data on beer ratings ---- # Set working directory ---- setwd("C:\\Users\\John Karuitha\\OneDrive - University of Witwatersrand\\Documents\\My Thesis\\Karuitha and Ojah Data\\r_training\\beer_debate") save.image("C:/Users/John Karuitha/OneDrive - University of...
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# Model fitting and Generalized Linear Model # This file contains a tutorial material for fitting models and constructing Generalized Linear Model # Edited by David Du # Nov-08-2021 # Note: model fit refers to investigating the R-squard adj value # Note: AIC -> Akaike Information Criterion -> refers to the likelihoo...
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complete <- function(directory, id = 1:332) { data <- c() idframe <- c() #for loop takes x in an array, not just a value for(x in id) { #formatC adds the excess 0's in front of the id value file <- paste(getwd(), "/", directory, "/", formatC(x, 2,flag = 0), ".csv", ...
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#' @title Search Affiliation Content on SCOPUS #' #' @description Searches SCOPUS to get information about documents on an affiliation #' @param affil_id Affiliation ID number. #' @param affil_name affiliation name. Disregarded if \code{affil_id} is #' specified #' @param verbose Print diagnostic messages #' @param a...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Catalan.R \name{Catalan} \alias{Catalan} \alias{A000108} \alias{Segner} \title{Catalan numbers} \usage{ Catalan(n, gmp = TRUE) } \arguments{ \item{n}{the number of first \code{n} entries from the sequence.} \item{gmp}{a logical; \code{TRUE} ...
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GenerateGraph.R
library(ggplot2) csv <- read.table("mseDynamic.txt", sep = ",", header = TRUE) #remove with ID zero (no MSE, first matrix collected) table <- subset(csv, id != 0) yticks <- c(0, 250, 500, 750, 1000, 1250, 1500) graph <- ggplot(data = table, aes(x = id, y = mse, group = app)) + theme_bw() + theme( legend.p...
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StepE.R
################################################################### #Part D: Predict Values in the Test Data and Create a Confusion Matrix # 8. Use the predict( ) function to validate the model against test data. Assuming that you put the output from the ksvm( ) call into svmOutput and that your test data set is in a...
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shannon.R
#' @title Shannon Entropy #' #' @description #' Calculates the Shannon entropy value #' #' @param p A vector of epiallele probabilities #' @return The Shannon entropy value #' @examples #' a<-c(rep(0,13),60.86960,0.00000,39.1304) #' shannon(a) #' @export shannon <- function(p) { p1 <- p[p > 0] sum(-p1/100 * l...
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nba_eda.R
# NBA 데이터를이용해, 슛확률(Spoint)에대해회귀분석을시행해보자. nba <-read.csv('NBA.csv') head(nba) library(GGally) plot(nba) str(nba) for (i in 1:dim(nba)[2]){ print(summary(nba[i])) } test <- subset(nba, select=c(2:11)) ggpairs(test) colnames(nba) # [1] "Name" "height" "games" "minutes" "age" "point" # [7] "...
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facet_map.R
### Make a facet map of US states with the number of new cases over time library(tidyverse) library(tidycensus) library(cowplot) library(TTR) library(geofacet) library(broom) ### Pull cases data from the NY Times repo below ### ### https://github.com/nytimes/covid-19-data ### spreadsheet <- "../Datasets/nytimes/cov...
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3.3-plot-within-strategy-effects.R
library(dplyr) library(ggplot2) library(viridis) library(ggrepel) load("portfolio/data-generated/diff-dat-stan.rda") load("portfolio/data-generated/m.rda") devtools::load_all("pfxr") b <- broom::tidyMCMC(m, conf.int = T, estimate.method = "median", conf.level = 0.5, conf.method = "quantile") g1 <- b[grepl("coef_g1"...
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ProbTable.R
# A table of possible values and their probabilities, from which we can derive # the mean (expected value), variance, and standard deviation. ProbTable <- setRefClass("ProbTable", fields = list( frame = "data.frame", mean = "numeric", var = "numeric", stdev = "numeric" ), methods = list( i...
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section-10-11-11am.R
################################################### #### Examples in Faraway Chapter 6 #### #### Cong Mu #### 10/11/2019 ################################################### library(faraway) library(ggplot2) library(lmtest) #### Example in Chapter 6 ## Constant variance data(savings) head(savings) lmod <- lm(sr ~ p...
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client.R
#' Make an API call #' #' @param model model name #' @param func function name #' @param req request data, typically a list or data #' @param host the host of the API server #' @export #' @examples #' \dontrun{ #' api_run("iris", "pred", iris) #' } #' api_call <- function(model, func, req, host = "http://127.0.0.1:5000...
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auto_bio.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/auto.R \name{auto_bio} \alias{auto_bio} \title{Automate Spatial Classification} \usage{ auto_bio(my.data, index_res, bioregion = NULL) } \arguments{ \item{my.data}{=} \item{index_res}{= Spatial Resolution (i.e., "BASIN", "COAST", "INLAND", o...
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ExportVISPTM.R
## David Degnan, Pacific Northwest National Labs ## Last Updated: 2020_09_24 # DESCRIPTION: This contains the modal for exporting the FRAG csv. list( # Get all figures getAllVisPTMFigs <- function(VisPTM) { # Initiate List to hold all Vis PTM Figures AllVisPTMFigs <- list() # Start progress bar for each...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sim.plot.R \name{sim.plot} \alias{sim.plot} \title{Generate plots for estimated percent allocation and response per dose.} \usage{ sim.plot(sims) } \arguments{ \item{sims}{output from sim.trials} } \value{ Error plots of estimated (1) percent...
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#------------------------------ # repo.R # This file returns dataframes related to the CSV's that are imported into the functions ############################################################################################## library("plyr") library("stringr") library("zoo") #============================ # get...
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run_analysis.R
library(tidyverse) # create x,y and subject data sets X_test <- read.table( "./test/X_test.txt", sep = "", quote = "\"'", skip = 0, stringsAsFactors = FALSE) y_test <- read.table( "./test/y_test.txt", sep = "", quote = "\"'", skip = 0, stringsAsFactors = FALSE) subject_test <- read.table( "./test/subject_...
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data_project.R
setwd("C:/Users/23721/Downloads/DAta analytics") data <- read.csv("Traffic_Crashes_-_Vehicles.csv") levels(data$MODEL) apply(data,2,function(x) print(class(x))) data$CRASH_DATE<-as.POSIXct(data$CRASH_DATE,format="%m/%d/%Y %I:%M:%S %p", tz="UTC") data <- data[,-c(1,2,3,5,7,8,9)] #reform the year library(lub...
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ch_13.R
# 일표본 # 01. 데이터 불러오기 RTD = read.csv('../data/Ch09.RTD.csv', header = T) head(RTD) RTD = round(RTD, digits = 2) head(RTD) # 02. 기술통계량 확인 attach(RTD) library(psych) describe(RTD) # 03. 그래프 그리기 rpar = par(no.readonly = T) # 디폴트 par 값을 미리 할당 par(mfrow = c(1, 2)) boxplot(weight) hist( weight, breaks = 10, c...
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kaggle_crime_pega.R
#####--------------------------##### ##### Kaggle SF crime ##### #####--------------------------##### dir() dat <- read.csv("train.csv") head(dat) table(dat$Category) which(dat$Category == "TREA") dat[which(dat$Category == "ASSAULT"), ]$Descript ###################################################### # plot ...
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##Question 2) check if a five-digit number n is divisible by 9 n <- as.numeric(readline("enter a positive int (n): ")) n_copy <- n digits <- numeric(5) for (i in 1:5) { digits[i] <- n %% 10 n <- n %/% 10 } if (sum(digits) %% 9 == 0) { cat(sprintf("%d is divisible by 9\n", n_copy)) } else { cat(sprin...
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testlist <- list(Rext = numeric(0), Rs = numeric(0), Z = numeric(0), alpha = numeric(0), atmp = numeric(0), relh = numeric(0), temp = c(5.37986976831671e+228, 3.07839226128608e+169, 3.62462043001606e+228, 5.43226404014686e-312, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ...
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#============ # Text mining #============ # Text 에서 인사이트를 찾는 좋은 분석 방법이다 # 앱 평가, 인기 검색어, 연설문, 소설 등 다양한 텍스트 형태의 파일을 분석할 수 있다 # #======== # Library #======== Sys.setenv(JAVA_HOME = 'C:/Program Files/Jave/jre1.8.0_251') # Java Home 위치 설정 필요 library(KoNLP) # 한국어 분석 library(worldcloud) # 워드클라우드 library() #==========...
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p.lin.lang.R
#' @name p.lin.lang #' @aliases p.lin.lang,Rscexv-method #' @rdname p.lin.lang-methods #' @docType methods #' @description Calculates the linear hypothesis p value. #' @param x data matrix #' @param groups.n the amount of groups #' @param clus the grouping vector #' @param n the amount of boot strap operations default=...
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# initialize local variables ---------------------------------------------- acsSurvey <- "acs5" censusYear <- 2010 columnTypeList <- readr::cols( GEOID = col_character() ) # load data --------------------------------------------------------------- # for Illinois counties, Illinois tracts, and HSTP region 6 block gr...
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# GBM Regression library("gbm") library('caret') source(file = './helpers.R') ## ## Load Data, Clean, & Split ## setwd('/Users/rileymatthews/Projects/Africa Soil') full.df <- read.csv(file = './Data/training.csv', header = TRUE, row.names = 'PIDN') full.test.df <- read.csv(file = './Data/sorted_test.csv', header = T...
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#Emma Buckley #21 April 2021 #Correlations #Day 3 install.packages("ggpubr") install.packages("corrplot") # Load libraries #activate the packages library(tidyverse) library(ggpubr) library(corrplot) # Load data ecklonia <- read_csv("~/Biostatistics/Second part of R/Biostats-2021/data/ecklonia.csv") #Removing cate...
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#Ex12.12, Page 496 #Answers may vary slightly due to rounding off of values x<-c(42.2,42.6,43.3,43.5,43.7,44.1,44.9,45.3,45.7,45.7,45.9,46.0,46.2,46.2,46.8,46.8,47.1,47.2) y<-c(44,44,44,45,45,46,46,46,47,48,48,48,47,48,48,49,49,49) data1<-data.frame(x,y) model<-lm(y~x,data=data1) cat("Regression model:\n") p...
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\alias{gdkEventGetScreen} \name{gdkEventGetScreen} \title{gdkEventGetScreen} \description{Returns the screen for the event. The screen is typically the screen for \code{event->any.window}, but for events such as mouse events, it is the screen where the pointer was when the event occurs - that is, the screen which has t...
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Kate <-c(22,18,23,20,16,20) Lucy <-c(32,18,24,18,20,16) Kate_price = 12 Lucy_price = 15 Kate_profit = sum(Kate * Kate_price) Lucy_profit = sum(Lucy * Lucy_price) Combined_profit = Kate_profit + Lucy_profit Kate_profit Lucy_profit Combined_profit
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## Stage - Legallois ## ## Fonction AFC ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## ## # path = "~/Dropbox/2019-2020/Stage/Corpus_Retour_au_texte/" # csv = "Corpus_motifs.csv" (sortie du script de regex) # une_oeuvre = "Rigodon.cnr" (si choix d'affichage d'une seule oeuvre, entrez le nom...
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#cgp_mut_inf.R library(data.table) library(reshape2) library(parallel) # This script will be to get essential mutations only # Load file cgp_mut <- fread("/tigress/zamalloa/OBJECTS/mutations.txt", select = c(1,4,7)) cgp_exp <- readRDS("/tigress/zamalloa/CGP_FILES/083016_cgp_exp.rds") # Process effect of each mu...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/linreg_class2.R \docType{class} \name{linreg-class} \alias{linreg-class} \alias{linreg} \title{RC type object to represent linreg-data.} \description{ linreg object holds data and methods for data calculated in \code{linreg()}-function. } \se...
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library(ipred) training <- read.csv("/home/saikat/Documents/2020/Project/Dataset_ML_Cla.csv") training <- training[0:2610,] summary(training) tail(training) test <- read.csv("/home/saikat/Documents/2020/Project/Dataset_ML_Cla_test.csv") test <- test[0:259,] training$close_norm <- as.factor(training$close_norm) set.see...
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##TA-PostgreSQL=group ##NPV=file ##ques_c_db=string ##cost_threshold=number 2 ##statusoutput=output table # library(pander) # library(knitr) # library(markdown) library(rasterVis) library(reshape2) library(plyr) library(lattice) library(latticeExtra) library(RColorBrewer) library(hexbin) library(grid) library(ggplot2)...
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# Clean up General Payment Data library(tidyverse) gpd <- read_csv("data/General_Payment_Data_Full.csv", guess_max = 36000) gpd2 <- gpd %>% select(-matches("Teaching_Hospital"), -ends_with(c("2", "3", "4", "5")), -Form_of_Payment_or_Transfer_of_Value, -Covered_Recipient_Type, -Physician_Primary_Typ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/searchFeatures.R \name{searchFeatures} \alias{searchFeatures} \title{searchFeatures function} \usage{ searchFeatures(host, featureSetId, name = NA_character_, geneSymbol = NA_character_, parentId = NA_character_, referenceName = NA_charac...
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\name{AgNode-class} \docType{class} \alias{AgNode-class} \alias{AgNode} \alias{AgNode<-} \alias{color} \alias{fillcolor} \alias{name} \alias{shape} \alias{getNodeRW} \alias{getNodeLW} \alias{getNodeCenter} \alias{getRadiusDiv} \alias{getNodeHeight} \alias{style} \alias{style,AgNode-method} \alias{color,AgNode-method} \...