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##suppressMessages(library(purrr)) #' Generates a random permutation #' #' If \code{x} is an integer, then returns an element of the symmetric #' group on \code{x} elements. If \code{x} is a vector, then generates a #' permutation of the elements of \code{x}. #' #' @param x An integer or a vector. #' @return A vec...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/functions-vector.R \name{whichMin} \alias{whichMin} \title{whichMin} \usage{ whichMin(x) } \arguments{ \item{x}{numeric vector} } \value{ numeric vector that contains the indexes of *all* min elements, not just the *first* } \description{ beh...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils.R \name{grepv} \alias{grepv} \title{Pattern matching} \usage{ grepv(pattern, x, value = T, ...) } \arguments{ \item{pattern}{character, pattern to look for} \item{x}{character vector, object wherein to look for the pattern} \item{valu...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/rowRanks.R \name{rowRanks} \alias{rowRanks} \alias{colRanks} \title{Gets the rank of the elements in each row (column) of a matrix} \usage{ rowRanks(x, rows = NULL, cols = NULL, ties.method = c("max", "average", "first", "last", "random", "...
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#' R course day 2/ Live coding #' 10.Feb.2018 # Recap day 1 mydata <- 5 rm(mydata) myvector <- c(3,5, 4.3, 6) mean(gdp$date) dataframe$newvariable <- NULL ?functionname summary() str() head() tail() names(gdp) # piaac <- read.csv("http://www.ut.ee/~iseppo/piaacest.csv") mean(piaac$earnhr, na.rm = T) median(piaac$e...
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library(waved) ### Name: make.lidar ### Title: Make LIDAR signal ### Aliases: make.lidar ### Keywords: internal ### ** Examples plot(seq(0,1,le=1000),make.lidar(1000),type='l')
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{whately_2015} \alias{whately_2015} \alias{orchard_2015} \title{Weather data from Macleish Field Stations} \format{ For both, a data frame (\code{\link[dplyr:tbl_df]{dplyr::tbl_df()}}) with roughly 52,560 rows and 8...
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\name{extract.prior} \alias{extract.prior} \title{Extracting information about zero-claims and severity inflation } \description{A way of extracting information about zero-claims and severity development inflation through the DCL method applied to two counts triangles: number of payments and number of reported clai...
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library(text2vec) library(data.table) library(magrittr) library(stopwords) library(SnowballC) library(caret) library(glmnet) setwd("~/Desktop/BIOS 735/final_project/jigsaw-toxic-comment-classification-challenge") sample <- fread("sample_submission.csv") test <- fread("test.csv") test_labels <- fread("tes...
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df <- read.csv("C:/Users/OmarVr/Downloads/small_train.data", sep = '\t', header=T,encoding = 'UTF-8') label <- read.csv("C:/Users/OmarVr/Downloads/small_train_upselling.labels", sep = '\t', header = F, encoding = 'UTF-8') new_data <- read.csv("C:/Users/OmarVr/Downloads/small_test.data"...
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setwd("~/Desktop/ESCP/R Class") Fueleff <-read.csv("1-FuelEfficiency.csv") head(Fueleff) plot(GPM~WT, Fueleff) model_1= lm(GPM~., data=Fueleff) summary(model_1) Fueleff= Fueleff[-1] model_1= lm(GPM~., data=Fueleff) summary(model_1) cor(Fueleff) library(leaps) X=Fueleff[ ,2:7] Y=Fueleff[ ,1] #new function. I use Ma...
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library(ape) testtree <- read.tree("4281_1.txt") unrooted_tr <- unroot(testtree) write.tree(unrooted_tr, file="4281_1_unrooted.txt")
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/run.functions.R \name{pDcalc} \alias{pDcalc} \title{Calculate plugin pD from a JAGS model with univariate likelihood for studies with repeated measurements} \usage{ pDcalc( obs1, obs2, fups = NULL, narm, NS, theta.res...
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#' Transform all data structures into clusterTree #' #' @param x data structure output by some clustering method #' (e.g. hclust, kmeans, dbscan, etc.) #' @return a matrix providing the mapping #' between data points and cluster id. #' @examples #' x <- kmeans(matrix(rnorm(100),nrow=50),centers=3) #' getClusterTree(x...
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####Comparison of predicted gene number between high and low seqeuncing depth table <- read.table("geneNum_12.4G_VS_6.2G.txt",header = T) library(reshape2) table_melt <-melt(table,id.vars = "ID") table_melt$value <- table_melt$value/1000 table_melt$variable <- factor(table_melt$variable, levels = c("Base6.2G","B...
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# # Description of this R script: # Rotated H-transform of an array A by a matrix M. # # Intended for use with R. # Copyright (C) 2015 Adam Lund # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/as_tibble-methods.R, R/coerce-tbl_df-methods.R \name{as_tibble} \alias{as_tibble} \alias{as_tibble.DataFrame} \alias{as_tibble.IPosRanges} \alias{as_tibble.GenomicRanges} \alias{coerce-tbl_df} \alias{coerce,data.frame,tbl_df-method} \alias{co...
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#' do.filter - filtering data.table using multiple match values #' #' This function allows filtering of a data.table using multiple match values -- all cells that contain any of the match values will be filtered, and provided in a new data.table. #' #' @param dat NO DEFAULT. A data.table #' @param use.col DEFAULT = NUL...
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#load the libraries library(data.table) # Fast CSV read library(ggplot2) #Visualisation library(lubridate) #Date-Time extraction library(dplyr) #Data wrangling library(ranger) # Random forest library(geosphere) #Dist library(caret) #Cross vaildation library(xgboost) library(DataExplorer) library(mlr) library(...
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scale_mse <- function( scales ) { ### loss function loss<-function(y_true, y_pred){ k_mean( (k_mean(k_square(y_pred-y_true),axis=-1,keepdims=TRUE)/scales)) } loss } fcn_block<-function(input){ ### convonlutional blocks squeeze_excite_block<-function(input){ filters = unlist(k_get_var...
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NonParametric.VUS <- function(x,y,z,alpha=0.05,NBOOT=50,FisherZ=FALSE) { ###################################################################################################################################################### ########This function provides Nonparametric estimate on VUS =Pr(X1<=X2<=X3) #####...
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#' Retrieve a data frame of all mailing lists from Qualtrics #' #' @template retry-advice #' @importFrom purrr map_df #' @importFrom purrr flatten #' @export #' #' @examples #' \dontrun{ #' # Register your Qualtrics credentials if you haven't already #' qualtrics_api_credentials( #' api_key = "<YOUR-API-KEY>", #' b...
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#download the files and change the working directory in R Studio to the folder where the data files exist #setwd("filepath") # First we read all the data files for which we need to tidy the data. #Training files train_data_x <- read.table("./train/X_train.txt") train_data_y <- read.table("./train/y_train.txt") train_...
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#!/usr/bin/env Rscript args <- commandArgs(trailingOnly=T) if(length(args) < 2) { stop('Usage: rtt2.R <tree> <outname>') } suppressPackageStartupMessages(require(ape)) suppressPackageStartupMessages(require(pander)) suppressPackageStartupMessages(require(genieR)) #suppressPackageStartupMessages(require(adephylo)) ...
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#Vikas Pal #the data show the text minning and representation of it the form of word cloud #loading data from the local folder data <- read.csv('data.csv',header = FALSE) #handling emoticons data <- sapply(data,function(row) iconv(row, 'latin1', 'ASCII',sub = '')) #calling text mining package library(tm) ...
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source("001package.R") source("202df_tb.R") # reconcile sales to ar---- #+ df_join <- df_ar %>% filter(subaccount == "Accounts Receivable") %>% mutate(amt = debit, amt = ifelse(amt == 0, -credit, amt)) %>% group_by(num) %>% full_join(df_ar %>% filter(subaccount == "Revenue") %>% ...
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#### PRELIMINARIES #Contains preliminary code chunks to be reproduced at the beginning of each time step preliminary_f <- function(){ if(flag_suspend_ergodic==1){ if(t<ergodic_trans){ flag_auction <<- 0 flag_deforestation <<- 0 flag_land_abandon <<- ...
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\name{Scenario2} \alias{Scenario2} \title{ Simulated data - Scenario 2 } \description{ Simulates the data as described in the reference provided below (Scenario 2). } \usage{ Scenario2(sigmak = 0.1) } \arguments{ \item{sigmak}{ Standard deviation of the error term } } \value{ Return a list made of the following item...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tiler.r \name{tiler} \alias{tiler} \title{tiler function} \usage{ tiler(t, x, xl = F, xs = 1, y, yl = F, ys = 1, z, zl = F, zs = 1, bin = 1, min = -5, max = 5, xrange = c(-100, 100), yrange = c(-100, 100), func = "median", col = cols) } \...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/EvaluationSummary.R \name{computeAuc} \alias{computeAuc} \title{Compute the area under the ROC curve} \usage{ computeAuc(prediction, confidenceInterval = FALSE) } \arguments{ \item{prediction}{A prediction object as generated using the \code{...
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# fish exercise - day 1 # 1. Import "Fish.csv" (mind not available values!) setwd('~/Dropbox/R_course/day1') fish <- read.table("Fish.csv", header=T, sep=',', dec=".") # load dataframe head(fish) attach(fish) # 2. Which was the maximum, which was the minimum size of each caught species? ran...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PopHumanAnalysis.R \name{PopHumanAnalysis} \alias{PopHumanAnalysis} \title{iMKT using PopHuman data} \usage{ PopHumanAnalysis( genes = c("gene1", "gene2", "..."), pops = c("pop1", "pop2", "..."), cutoff = 0.05, recomb = TRUE/FALSE, ...
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# path = Sys.getenv('PATH') # Sys.setenv(PATH= sub('MeCab', 'MeCab_sjis', path)) # Sys.getenv('PATH') #Sys.getenv('PATH') library('tidyverse') library('RMeCab') library('igraph') getwd() #setwd('../projects/lec') setwd('../lecture2019/') kokoro = read.delim('data/kokoro.tsv', header=T, sep='\t', stringsAsFactor=...
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library(shiny) shinyServer( function(input,output) { output$name=renderText(input$name) output$age=renderText(input$age) output$addr=renderText(input$addr) output$gender=renderText(input$gender) } )
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/SCtagging.R \name{mirror2esnssite} \alias{mirror2esnssite} \title{mirror2esnssite} \usage{ mirror2esnssite(region = "ScotianShelf") } \value{ status message in case it was called by webpage } \description{ ESSENTIAL FUNCTION. Must call after ...
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\encoding{UTF-8} \name{lines.TPCmsm} \alias{lines.TPCmsm} \title{lines method for a TPCmsm object} \description{lines method for an object of class \sQuote{TPCmsm}.} \usage{\S3method{lines}{TPCmsm}(x, plot.type="t", tr.choice, col, lty, conf.int=FALSE, ci.col, ci.lty, legend=FALSE, legend.pos, curvlab, legend.bty="n"...
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#Cargar los datos DFHoteles <- read.csv("hotel_bookings.csv") View(DFHoteles) #Inspeccionar los datos nrow(DFHoteles) ncol(DFHoteles) colnames(DFHoteles) str(DFHoteles) summary(DFHoteles) #Mis Visualizaciones #Primer grafico table(DFHoteles$arrival_date_year) table(DFHoteles$arrival_date_month) table(DFHot...
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# Temporary change the locale my_lc_time <- Sys.getlocale("LC_TIME") Sys.setlocale("LC_TIME", "en_GB.UTF-8") # Get the data source("getData.R") getData() # read and extract relevant data data <- read.table("./data/household_power_consumption.txt", header=TRUE, sep = ";", stringsAsFactors=FALSE) subsetData <- subset(d...
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library(caret) library(mlbench) library(magrittr) data(Sonar) set.seed(107) in_train <- createDataPartition(y = Sonar$Class, p = 0.75, list = FALSE) training <- Sonar[in_train, ] testing <- Sonar[-in_train, ] ctrl <- trainControl(method = "repeatedcv", repeats = 3, classPr...
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#!/share/apps/R-3.2.2_gcc/bin/Rscript #library(chron) library(data.table) data_dir = "/data/hydro/users/Hossein/codling_moth_new/local/processed/section_46_Pest/" output_dir = "/data/hydro/users/Hossein/codling_moth_new/local/processed/section_46_Pest/" name_pref = "combined_CMPOP_4_pest_rcp" models = c("45.rds", "85....
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################### IMPORTANT NOTICE ####################### # Below you'll find 4 functions: # TransMatrix # calculates transition matrix between AOIs - returns transtion matrix M, # TransPlot # plots tranistion matrix - returns TM plot with probabilities in each cell; # TransEntropy # ...
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#============================================================================= # # This plots the density for the various # input variables grouped according to # # test / trainingset # #============================================================================= require(ggplot2) load(file="../Processed/norm_datas...
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# fst IO #' R6 class to load fst files LazyFST <- R6::R6Class( classname = 'LazyFST', private = list( file_path = NULL, transpose = F, meta = NULL, dims = NULL, data = NULL, last_visited = NULL, delayed = 3 ), public = list( open = function(...){}, close = function(..., .rem...
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# Process NONMEM simulation .fit file from 190220_nonmem_pop.R dataset # ----------------------------------------------------------------------------- # Aim is to replicate some of the plots from the paper # Designed to be used with three separate simulation files # - - - - - - - - - - - - - - - - - - - - - - - - - - ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/importexport.R \name{addISCO} \alias{addISCO} \title{Add columns with occupations and change format to long.} \usage{ addISCO(dataSource, NAcodes) } \arguments{ \item{dataSource}{data frame returned by importFromTxt function.} \item{NAcodes}...
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# code from EPIC r package. #signature_epic <- EPIC::TRef$refProfiles #gene_epic <- EPIC::TRef$sigGenes EPIC <- function (bulk, reference = NULL, mRNA_cell = NULL, mRNA_cell_sub = NULL, sigGenes = NULL, scaleExprs = TRUE, withOtherCells = TRUE, constrainedSum = TRUE, rangeBasedOptim = FALSE) { ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/io.R \name{catIf} \alias{catIf} \title{Call cat If Condition Is Met} \usage{ catIf(condition, ...) } \arguments{ \item{condition}{if TRUE, cat is called, else not} \item{\dots}{arguments passed to cat} } \description{ Call cat If Condition I...
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rm(list = ls()) #ensure that no hidden variables are loaded through .Rhistory or .Rsession library(reshape2) library(ggplot2) N <- 300 #default is 300 nsim <- 100 #default is 100 network_type <- "WS" vary <- "cb" WS.nei <- 5 #default is 5 WS.p <- 0.2 #default is 0.1; 0.2 corresponds to Figure 4 #Note: the reason th...
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setwd("/Users/Alfonso/r-workspace/machine-learning/l2") list.files() library(shiny) runApp(".")
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subroutine window(lbnd,ubnd,xmin,xmax,diff) implicit integer*4 (i-q) include "../common/hptrm" include "../common/lundefs" real*4 lbnd,ubnd,xmin,xmax,diff character*1 escape character*80 iopcon,outline escape = char(27) # RED Initialize to 0 the following 4 vars x1 = 0 x2 = 0 y1 = 0 y2 = 0 icheck=0 #...
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#title :week1.R #description :This is a practice file from week 1 lessons. #author :Hizkia Febianto #date :20170609 ###Entering Input### x<-1 print(x) msg <- "Hello" msg #Printing a sequence x <- 1:20 # a sequence of numbers from 1 to 20 x #Output: [1] 1 2 3 4 5 6 7 8 9 10 11...
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library(readr) library(dplyr) # read input from file input <- read_lines("input.txt") # separate each line into three separate numbers, convert to data frame input_split <- input %>% lapply(strsplit, split = "x") %>% unlist %>% matrix(ncol = 3, byrow = TRUE) %>% as.data.frame(stringsAsFactors = FALSE) # coerce char...
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#' Plot line or bar graphic #' #' @description Function use the dtsm function for plot the results #' @param data Output from ger_testcomp function #' @param type Type of graphic. "bar" or "line" #' @param x Axis x variable #' @param y Axis y variable #' @param group Group variable #' @param ylab Title for the axis y #...
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library(ggplot2) theme_set(theme_bw()) casePlot <- ( ggplot(sims, aes(x=day, y=cases)) + geom_line(aes(color=Symptomatic), size=1.5) ) print(casePlot+scale_y_log10()) print(casePlot) infPlot <- ( ggplot(sims, aes(x=day, y=infections)) + geom_line(aes(color=Symptomatic), size=1.5) ) print(infPlot+scale_y_log10()...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ch09-dim.R \name{casl_tsne} \alias{casl_tsne} \title{Compute t-SNE variance values.} \usage{ casl_tsne(X, perplexity = 30, k = 2L, iter = 1000L, rho = 100) } \arguments{ \item{X}{A numeric data matrix.} \item{perplexity}{Desired perplexity s...
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library(reliaR) ### Name: abic.logis.exp ### Title: Akaike information criterion (AIC) and Bayesian information ### criterion (BIC) for Logistic-Exponential(LE) distribution ### Aliases: abic.logis.exp ### Keywords: models ### ** Examples ## Load data sets data(bearings) ## Maximum Likelihood(ML) Estimates of alp...
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#' Scale a coancestry tree #' #' Scale by a scalar `factor` all the edges (`$edge.length`) of a `phylo` object from the `ape` package, including the root edge (`$root.edge`) if present, and additive edges (`$edge.length.add`, present in trees returned by [fit_tree()]). #' Stops if any of the edges exceed 1 before or af...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/sparkline_helper.R \name{spark_options_box} \alias{spark_options_box} \title{Create sparkline options js to include in column call back} \usage{ spark_options_box(raw = NULL, showOutliers = NULL, outlierIQR = NULL, boxLineColor = NUL...
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#Reading in the data and subsetting for the required dates powerdata <- read.table("household_power_consumption.txt",header = TRUE, sep=";") subpowerdata <- subset(powerdata, powerdata$Date=="1/2/2007" | powerdata$Date=="2/2/2007") # Changing the data from factor to numeric subpowerdata$Global_active_power <- as....
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# 단일 집단 평균 검정(단일 표본 T 검정) setwd("/Users/yuhayung/Desktop/coding/학원/Rtraining/dataset2") data <- read.csv("one_sample.csv", header = T) str(data) # 150 head(data) x<- data$time head(x) summary(x) mean(x) mean(x,na.rm = T) # 데이터 정제 x1 <- na.omit(x) # na 데이터 (omit) 빼기 mean(x1) # 정규분포 검정 # 귀무가설 - x의 데이터 분포는 정규분포이다...
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# File to estimate major sources in NE US #Set directory home.dir <- "~/Dropbox/SpatialFA/" dir1 <- file.path(home.dir, "data") paperdir <- file.path(home.dir, "paper_spatialfa/figs") #Load my packages library(share) library(handles) library(sharesim) #load other packages library(devtools) library(RColorBrewer) lib...
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library("datetime") new_probe_period<-30 load('rain_day.RData') load('input_data.RData') lambda <- 0.9 output_vector_length <- 2 input_vector_length <- 2 data_length <- output_vector_length+input_vector_length ### Clean model ### params <- rep.int(0.1,data_length) P <- diag(data_length) ### DATA ### response_data <- ...
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library('data.table') NEI <- readRDS("data/exdata_data_NEI_data/summarySCC_PM25.rds") SCC <- readRDS("data/exdata_data_NEI_data/Source_Classification_Code.rds") # get total emissions of the years 1999, 2002, 2005, and 2008. aggregated_total_by_year <- aggregate(Emissions ~ year, NEI, sum) png('plot1.png') barplot(he...
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# Cleans the hessian used to get confidence intervals for the parameters # Until the hessian is not positive definite, we take the smallest eigenvalues # and increase them to a tolerance. We then invert this modified hessian and # we remove the parameter with the highest variance from the hessian. # We returned the re...
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#optional area' #setwd("/Users/i312190/Desktop/Data Science/UNIT4/WEEK1") #optional area' raw_data <- read.csv("household_power_consumption.txt", header = TRUE, sep = ';', na.strings = "?") raw_data$Time <- paste(raw_data$Date, raw_data$Time) raw_data$Date <- as.Date(raw_data$Date, format = "%d/%m/%Y") new_data <- raw_...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/st_arrow.R \name{validate_metadata} \alias{validate_metadata} \title{Basic checking of key geo metadata columns} \usage{ validate_metadata(metadata) } \arguments{ \item{metadata}{list for geo metadata} } \value{ None. Throws an error and stop...
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# Shown in the viewer: ggplot(mtcars, aes(x = cyl, y = wt)) + geom_point() # Solutions: # 1 - With geom_jitter() ggplot(mtcars, aes(x = cyl, y = wt)) + geom_jitter() # 2 - Set width in geom_jitter() ggplot(mtcars, aes(x = cyl, y = wt)) + geom_jitter(width=0.1) # 3 - Set position = position_jitter() in geom_poi...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/Normal_ID.R \name{Normal_ID} \alias{Normal_ID} \title{Normal Prior Distribution Identifier} \usage{ Normal_ID(Low, High, Cover = NULL) } \arguments{ \item{Low}{researchers LOWEST value for the parameter.} \item{High}{researchers HIGHEST valu...
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context("Utilities") test_that("insert_at", { y <- "value" expect_that(insert_at(list(), y, 1), equals(list(y))) expect_that(insert_at(character(0), y, 1), equals(y)) expect_that(insert_at(list(), y, 0), throws_error("Invalid position")) expect_that(insert_at(list(), y, 2), throws_error("Invalid position"))...
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#' @title Simulate telemetry transmitter signals along a path #' #' @description #' `Modified from C. Holbrook by IDJ` Simulate tag signal transmission along a pre-defined path (x, y coords) #' based on constant movement velocity, transmitter delay range, and duration #' of signal. #' #' @param path A two-column d...
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# Biblioteca com implementação do Naive Bayes library(e1071) same_class <- function(a, b) { return ((a == 'P' && b == 'P') || (a != 'P' && b != 'P')) } dados <- read.table("./processed/processed.csv", sep=",", header=TRUE) folds <- 1:10 dados$fold <- sample(folds, nrow(dados), replace = TRUE) foldColNum <- grep(...
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library(shiny) library(data.table) library(igraph) library(GAM) library(GAM.db) library(GAM.networks) library(RCurl) library(parallel) #library(xlsx) library(pryr) library(logging) addHandler(writeToFile, file="/dev/stderr", level='DEBUG') "%o%" <- pryr::compose options(shiny.error=traceback) #options(shiny.trace=TRU...
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#------------------------------------------------------------------------------- GetFluoTimeSeries <- function(kymo, ini.ind, avg.width){ return(apply(kymo[, ini.ind:(ini.ind + avg.width)], 1, median)) } #-------------------------------------------------------------------------------
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install.packages("devtools") devtools::install_github("nicolewhite/RNeo4j") library(RNeo4j) ?startGraph graph <- startGraph("http://localhost:7474/db/data/") startGraph ?createNode addConstraint(graph, "gene", "name") gene1 <- createNode(graph, "gene", name = "Bra_10001") gene2 <- createNode(graph, "gene", name = "...
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library(TreeBUGS) ### Name: plotFit ### Title: Plot Posterior Predictive Mean Frequencies ### Aliases: plotFit ### ** Examples ## Not run: ##D # add posterior predictive samples to fitted model: ##D fittedModel$postpred$freq.pred <- ##D posteriorPredictive(fittedModel, M=1000) ##D ##D # plot model fit ##D pl...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data_preparation.R \name{aggreg_stratdata_in_harmonclasses} \alias{aggreg_stratdata_in_harmonclasses} \title{Aggregating a stratified dataset into the newly added harmonised classes} \usage{ aggreg_stratdata_in_harmonclasses( df, harmon_v...
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library(sf) library(ggplot2) library(maptools) library(dplyr) library(stringr) library(plyr) library(zoo) data$FIPS <- ifelse(nchar(data$FIPS) != 2 ,gsub(" ", "", paste("0",data$FIPS), fixed = TRUE), data$FIPS) #colnames(data)[colnames(data) == "CNTLAFFI"] <- "PUBPRIVATE" var <- read.csv("variables2.csv") sector <...
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## ---- user_input.R ---- #Date 2020-03-12 #Link to starting page for appartements that listed for sale on blocket and number of pages to be scraped home_url <- "https://www.blocket.se" start_url <- "https://www.blocket.se/annonser/hela_sverige/bostad/lagenheter?cg=3020" n_pages <- 9 #selectors table_div <- "KeyValTa...
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# Data Generating Processs to evaluate performance # 1) list_param_rds # batch submit num_mc_sim=1 iteration # see how long it takes (hoffman will give you the .log file) # keep track how many cores you used # fake example: 8 cores takes 20 minutes for num_mc_sim=1 # Population require(plyr) require(dplyr) require(...
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library(shiny) library(ggplot2) library(data.table) library(maps) library(rCharts) library(reshape2) library(markdown) library(mapproj) library(ISLR);library(randomForest); library(caret); data(Wage) Wage1 <- subset(Wage,select=-c(logwage, region, sex, health)) WageP <- subset(Wage,select=-c(logwage, region, health)) p...
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## Quick examples of updating by reference using data.table ## ## These examples are more abstract than practical. ## ## Updated: May 30, 2019 ## Author: James Henderson, PhD (CSCAR) # libraries: ------------------------------------------------------------------ library(tidyverse); library(data.table) # create a data...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/secrets.R \name{share_secret} \alias{share_secret} \title{Share a secret among some users.} \usage{ share_secret(name, users, key = local_key(), vault = NULL) } \arguments{ \item{name}{Name of the secret, a string that can contain alphanumeri...
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cache_matrix.R
#The first function, makeCacheMatrix creates a special "matrix", which is really a list containing a function to #set the value of the matrix #get the value of the matrix #set the value of the invertible matrix #get the value of the invertible matrix makeCacheMatrix <- function(x = matrix()) { inverse_matrix <- N...
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consensus_LG_assignment.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/exported_functions.R \name{consensus_LG_assignment} \alias{consensus_LG_assignment} \title{Consensus LG assignment} \usage{ consensus_LG_assignment( P1_assigned, P2_assigned, LG_number, ploidy, consensus_file = NULL, log = NULL ) ...
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obiba/opalr
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opal.assign.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/opal.assign.R \name{opal.assign} \alias{opal.assign} \title{Data or expression assignment} \usage{ opal.assign( opal, symbol, value, variables = NULL, missings = FALSE, identifiers = NULL, id.name = NULL, updated.name = NULL, ...
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2020-05-18T15:49:56.702530
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DA5_t_procedures.R
##########PART 1 START ############################################################################# # R code and explanation for data analysis 5 t procedures. # Read in the microbeersW19.csv dataset microbeers = read.csv(file.choose(), header = TRUE) # gives variable names. names(microbeers) # gives variable names....
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Part_A.R
library(igraph) library(sdpt3r) library(glue) library(mc2d) library(ggplot2) library(knitr) set.seed(161821) ER_graph = erdos.renyi.game(10,p=1/3, type = 'gnp', directed=FALSE) # Erdős–Rényi VS_graph = graph_from_literal(1--2, 1--4, 2--3, 4--3, 3--5, 5--6, 5--7) # the very small one include_nodes <- c(2,3,5) plot(V...
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2021-08-22T17:02:45.003708
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test-print.R
context("print") test_that("error formatting works properly", { x <- set_errors(rep(11111.22222, 8), c(12345678, 1234.5678, 12.345678, 1.2345678, .12345678, .012345678, .000012345678, .000000012345678)) expect_equal(capture.output(print(x)), c( "errors: 1.234568e+07 1.234...
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shroff254/shiny_windfarm
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2022-01-07T00:58:43.365500
2019-05-30T14:34:19
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plotEvolution.R
#' @title Plot the evolution of fitness values #' @name plotEvolution #' @description Plot the evolution of energy outputs and efficiency rates #' over the whole generations. Plots min, mean and max values. #' @export #' #' @importFrom graphics plot lines grid points par #' #' @param result The output matrix of \code{...
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sam-k/malaria-spat21-analysis
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2020-04-13T22:04:32.161882
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spat21_moz_data_import.R
# ----------------------------------------- # # Spat21 Data Set Importing # # Mosquito Data # # December 18, 2018 # # K. Sumner, S. Kim # # ----------------------------------------- # #### ------------------ load packages -----...
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analysis.r
all_global_data <- read.table("global-dump.txt", header = TRUE, sep="\t", col.names=c("ap", "pr","au", "gt", "rms", "pklv", "rssi", "snr", "loc"), fill=FALSE, strip.white=TRUE) global_data <...
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fernote7/thesis
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stab2.R
par(mfrow=c(1,2), xpd=FALSE, mar=c(2,4,2,2), oma=c(2,0,0,0)) z=10 plot(z, asp = 1, xlim = c(-2.5, 0), ylim = c(-1.5,1.5), axes = FALSE, ylab = "", xlab = "") rect(-5,-5,2,2, density = 15, angle = 50) draw.circle(-1, 0, 1, nv = 1000, border = NULL, lty = 1, lwd = 1, col = "white") abline(h=0) abline(v=0) z=10 plot(z, a...
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/R/preparingData.R
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ZarnackGroup/m6Aboost
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preparingData.R
## ============================================================================ ## The Methods-preparingData for the GRanges objects ## ---------------------------------------------------------------------------- #' @import GenomicRanges #' @import methods #' @rawNamespace import(IRanges, except = c(collapse, slice, d...
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/cachematrix.R
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cvaruns/ProgrammingAssignment2
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2021-01-21T21:29:22.774397
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cachematrix.R
## The purpose of these functions is to create a cache matrix, store it and return the ## inverse of the cached matrix stored. ## makeCacheMatrix is the function used to take a 'square matrix' as an argument and create a cache matrix makeCacheMatrix <- function(x = matrix()) ##Accepts only Square Matrix { i <- ...
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mvanhala/geospatial_data_sources
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download_elevation_files.R
library(sf) library(dplyr) library(purrr) library(stringr) library(readr) library(parallel) states <- read_sf("/mnt/data/boundaries/tl_2017_us_state") %>% st_transform(4326) system( glue::glue( "aws configure set aws_access_key_id {id}", id = Sys.getenv("AWS_ACCESS_KEY_ID") ) ) system( glue::glue( ...
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/EDA.R
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pecu/EDA
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2020-06-17T14:58:34.604278
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EDA.R
library(ggplot2) library(dplyr) raw = read.csv("Project(Part 1).csv", header = TRUE, sep = ',') # 統計敘述 result = summary(raw) # 颱風修復工程代碼 ans <- filter(raw, raw$颱風 == "97年辛樂克及薔蜜") %>% group_by(機關名稱, 工程代碼) %>% summarise(price = sum(審議經費.千元.)) highPrice <- filter(ans, price > 50000...