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library(GGEBiplots) ### Name: DiscRep ### Title: Discrimination vs. representativeness biplot ### Aliases: DiscRep ### Keywords: GGE ### ** Examples library(GGEBiplotGUI) data(Ontario) GGE1<-GGEModel(Ontario) DiscRep(GGE1)
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## app.R ## ###### Lectura de bases ###### ##### librerias #### library(shiny) library(googlesheets) library(shiny) # init some useful variables Logged = FALSE start = TRUE data_id = 1 # seteando la clave de la aplicación options(googleAuthR.client_id = "807629257711-q5d10ng1egi2qfru5drik4gj9iekn...
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#5장 A/B테스트 getwd() setwd("c:/Users/rhkdt/Desktop/R-/bussiness_prac/R") ab_imp<-read.csv("section5-ab_test_imp.csv",header = T,sep = ",",stringsAsFactors = F) head(ab_imp) ab_goal<-read.csv("section5-ab_test_goal.csv",header = T,stringsAsFactors = F) head(ab_goal) ab_imp_goal<-merge(x = ab_imp,y = ab_goal,by = "transact...
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########################## ## A boilerplate script ## ########################## ## Author: Hannah O'Sullivan h.osullivan18@imperial.ac.uk ## Script: boilerplate.R ## Desc: Introduction to writing R functions ## Date: October 2018 #clean environment rm(list = ls()) MyFunction <- function(Arg1, Arg2){ #statements i...
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dtt <- data.frame( trl.vwap.1 = runif(100), trl.vwap.2 = runif(100), cog.1 = runif(100), cog.2 = runif(100), fwd.vwap.1 = runif(100), fwd.vwap.2 = runif(100) ) # for each RIC # break dataset into 60-20-20 training-validation-test sets # with the training set: ### run regression for each fwd.adv with all th...
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library(aspace) ### Name: as_radians ### Title: Converts degrees to radians ### Aliases: as_radians ### Keywords: array ### ** Examples as_radians(theta = 90)
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/runtimeconfig_objects.R \name{Waiter} \alias{Waiter} \title{Waiter Object} \usage{ Waiter(error = NULL, failure = NULL, success = NULL, done = NULL, createTime = NULL, timeout = NULL, name = NULL) } \arguments{ \item{error}{[Output Only] If...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/lockdown.R \name{corona_lockdown} \alias{corona_lockdown} \title{Draw multiple smoothed graphs of new daily cases, with lockdown date, if present} \usage{ corona_lockdown( pdf = FALSE, minpeople = 4e+06, mincases = 200, cols = 7, st...
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# In this example a two-class support vector machine classifier is trained on a # toy data set and the trained classifier is used to predict labels of test # examples. As training algorithm the Minimal Primal Dual SVM is used with SVM # regularization parameter C=1 and a Gaussian kernel of width 1.2 and the # precision...
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load("test_of_test.RData") library(tm) library(gamlr) library(SnowballC) dtm_STT$dimnames[[2]] <- paste("ST", dtm_STT$dimnames[[2]], sep="_") dtmPD$dimnames[[2]] <- paste("DS", dtmPD$dimnames[[2]], sep="_") testX <- cbind(dtm_STT, dtmPD) ### TRY - I'm still missing terms # try adding ncol and dimnames for empty names...
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#' @title myncurve #' #' @param mu Mean value for a normal distribution #' @param sigma Standard deviation for a normal distribution #' @param a Value to calculate the probability of, P(Y>=a) #' #' @return Graph of the curve with shading based on a, as well as a calculation of P(Y>=a) #' @export #' #' @examples myncurv...
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## SET WORKING DIRECTORY # working dir = current file path setwd(normalizePath(".")) library(tuber) ## AUTHENTICATION ## Manage API on https://console.developers.google.com/apis/credentials app_id="find your own" app_secret="find you own" yt_oauth(app_id, app_secret, token="") ## COLECTING DOCS channel_id = "UC4a-Gb...
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# Splice fractions setwd("../") library(diem) suppressMessages(library(DropletUtils)) library(ggplot2) library(gplots) library(ggpubr) library(gridExtra) library(ggExtra) library(RColorBrewer) source("scripts/common/plotting.R") #========================================= # Functions #===============================...
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library(shiny) library(quantmod) library(ISLR); library(ggplot2); #require(rCharts) options(RCHART_LIB = 'polycharts') data(Wage) # # shinyUI # shinyUI(fluidPage( # Application title title = "Wage Predictor", fluidRow( column(4, img(src='wages.png', align = "left") ), column(8,...
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## ----------------------------------------------------------------------- ## ## IGraph R package ## Copyright (C) 2015 Gabor Csardi <csardi.gabor@gmail.com> ## 334 Harvard street, Cambridge, MA 02139 USA ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of ...
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library(envlpaster) ### Name: targetboot ### Title: targetboot ### Aliases: targetboot ### ** Examples ## Not run: ##D set.seed(13) ##D library(envlpaster) ##D library(aster2) ##D data(simdata30nodes) ##D data <- simdata30nodes.asterdata ##D nnode <- length(vars) ##D xnew <- as.matrix(simdata30nodes[,c(1:nnode)]) ...
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library("BiocParallel") register(MulticoreParam(2)) ##我的是两个核心 ,貌似有个检测核心个数找不找代码了………… rm(list=ls()) options(stringsAsFactors = F) library(DESeq2) library(stringr) getwd='../Rdata/' Figure_dir='../figures/' # 加载上一步从RTCGA.miRNASeq包里面提取miRNA表达矩阵和对应的样本临床信息。 load( file = file.path(getwd,'TCGA-KIRC-miRNA-example.Rdata...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tree-data.R \docType{data} \name{hr_train} \alias{hr_train} \title{Decision tree train data} \format{An object of class \code{tbl_df} (inherits from \code{tbl}, \code{data.frame}) with 1029 rows and 35 columns.} \usage{ hr_train } \descriptio...
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#' get_bio_oracle: Get environmental layers from Bio-Oracle. #' @description Get bioclimatic layers from Bio-Oracle for current and future scenarios #' @param period Time period. Posible values are: "current","2050","2100","2200". #' @param var_type Type of variable. Posible values are: 'salinity','sea_surface_temp...
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##image.R ##by Amy Goldlist, Decmenber 2017 ## Usage: Rscript src/image.R $orig_filename $new_filename ## the origina filename is "results/baby_data.csv" ## the target filename is "results/images/baby_histogram.png" ##This script created png file with a histogram of the data, grouped by sex # read in command line...
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library(matchMulti) ### Name: matchMulti ### Title: A function that performs multilevel matching. ### Aliases: matchMulti ### ** Examples #toy example with short runtime library(matchMulti) #Load Catholic school data data(catholic_schools) # Trim data to speed up example catholic_schools <- catholic_schools[cat...
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# # code: Governance Practice Indicator and Initiative Tables # # author: Kelly Claborn, clabornkelly@gmail.com # created: August 2018 # modified: # # ---- inputs ---- # 1) Governance-specific data tables (in 1_Nov2018/2_FlatDataFiles/ConsDB_Input) # # ---- outputs ---- # 1) Governance-specific back-end tables -...
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`huber` <- function(input, co = -1.345, shape = c('full','lower','upper')) { input <- unlist(input); len <- length(input); shape <- match.arg(shape) input <- (input - mean(input))/sd(input) change <- switch(shape, full = which(abs(input) > abs(co)), lower = which(input <= co), upper = which(input >= abs(co)...
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## server.R script ## source("common.R") function(input, output, session) { # Serve only possible values: observe({ # Adjust n. of individuals, simulation 1 s1_sel_n_clusters = input$s1_n_clusters updateSelectInput(session, "s1_n_individuals", choices = sort...
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## File Name: SRM_PARTABLE.R ## File Version: 0.07 SRM_PARTABLE_ORDER <- function(LIST, ngroups = 1L) { NEWLIST <- data.frame() for (g in 1:ngroups) { tmp <- subset(LIST,LIST$op=="=~" & LIST$group==g ) if (nrow(tmp) > 0L) { tmp <- tmp[order(tmp$lhs,tmp$rhs),] NEWL...
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######################################################################## # This script generates all the results plots from Simulation 1. Apologies # to anyone trying to figure out what's going on, cause I didn't anything. # ######################################################################## library(survival) ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/svIO.R \name{load_filtered} \alias{load_filtered} \title{Load a filtered data frame} \usage{ load_filtered(filename) load_filtered(filename) } \description{ Load a filtered data frame Load a filtered data frame }
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/merge_rgSets.R \name{merge_rgSets} \alias{merge_rgSets} \title{convenience function for merging large RGChannelSets} \usage{ merge_rgSets(rgSet1, rgSet2) } \arguments{ \item{rgSet1}{the first RGChannelSet} \item{rgSet2}{the second RGChannelS...
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#' Calculate min-max scaling #' #' @param x Indicator values. #' @param refval Refrence value. #' @param reverse Reverse direction of indicator values. calc.MMS <- function(x, refval, reverse = FALSE) { if(reverse){ x <- 1-x refval <- 1-refval } ((x-min(x))/(max(x)-min(x))) / ((refval-min(x...
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\name{CBS_PBMC_array} \alias{CBS_PBMC_array} \docType{data} \title{ An example dataset for partial reference-free cell composition estimation from tissue gene expression } \description{ The dataset contains 511 microarray gene expressions for 20 PBMC samples (mixed_all) and PBMC microarray reference for the matched 511...
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library(xgboost) library(boot) source('WERM_Heuristic.R') multiHeuristic = function(OBS,D,numCate){ ################################ # Data Setup ################################ W = OBS[,1:D] X = OBS[,(D+1)]; X0 = rep(0,length(X)); X1 = rep(1,length(X)); R = OBS[,(D+2)] Z = OBS[,(D+3)] Y = OBS[,...
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# image of distance matrix file <- "../Data/dist_matrix.rds" if(file.exists(file)) { d <- readRDS(file) } else { z <- readRDS("../Data/sample_results_allchr.rds") d <- matrix(nrow=length(z), ncol=nrow(z[[1]])) rownames(d) <- names(z) colnames(d) <- rownames(z[[1]]) for(i in seq_along(z)) { ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/testsim.R \name{jumptestperiod} \alias{jumptestperiod} \title{Nonparametric jump test for a long period} \usage{ jumptestperiod(retmat, method = "BNS") } \arguments{ \item{retmat}{log return matrix, with intervals saved in columns} ...
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## ################################################### ## Function to match data if object is of class pscore ## ################################################### ps.match.pscore <- function(object, object.control = NULL, matched.by = NULL, ...
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# Title : TODO # Objective : TODO # Created by: yz # Created on: 2018/3/20 library(optparse) option_list <- list( make_option("--v", type = 'character', action = "store", default = "1", help = "vip Cutoff"), make_option("--l", type = 'logical', action = "store", default = "F", help = "log 10 transform"), make_opti...
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library(data.table) library(dplyr) library(lubridate) #sets the location of the zip file to a location in your current working directory zipLoc<-'./exdata_data_household_power_consumption.zip' #unzips the file into a folder called exdata_data_household_power_consumption unzip(zipLoc) raw<-tbl_df(read.table('househol...
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# vim: set noexpandtab tabstop=2: #' Remove the Outliers in a Vector of 1D Coordinates #' #' Remove the Outliers in a Vector of 1D Coordinates #' #' @param x a numeric vector #' @param dy_thr the threshold for dy #' @param clustersize_thr the threshold for cluster size #' @param gapsize the threshold of points in recog...
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#' Test if is whole number #' #' Test if the number is the whole number #' #' @param x numeric #' @param threshold numeric: tolerance, threshold #' @return Logical #' @seealso ... #' @export amm.is.wholenumber <- function(x , threshold = .Machine$double.eps ^ 0.5) { abs(x - round(x)) <...
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library(ggTimeSeries) ### Name: stat_marimekko ### Title: Plot two categorical variables as marimekko ### Aliases: stat_marimekko ### ** Examples { library(ggplot2) ggplot( data.frame( x1 = round(3 * runif(10000), 0), y1 = pmax(pmin(round(3 * rnorm(10000), 0), 3), -3), weight = 1:10000 ) ) +...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utils.R \name{get_res_value} \alias{get_res_value} \title{Get value from results list} \usage{ get_res_value(txt, results) } \arguments{ \item{txt}{text of result to check against names} \item{results}{named list of results} } \value{ value ...
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#' List deposits #' #' Lists deposits for an account. #' #' @param account_id Account Id #' @export #' @family wallet-deposits #' @references \url{https://developers.coinbase.com/api/v2#list-deposits} get_deposits <- function(account_id) { endpoint <- paste("accounts", account_id, "deposits", sep = "/") coinbase_ge...
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## no_function() masstools::setwd_project() setwd("data/24_7_study/food_log/data_preparation/") library(tidyverse) rm(list = ls()) load("../../all_omes_wear_food") dim(all_omes_wear_food) data = all_omes_wear_food %>% dplyr::filter(MolClass == "Food") data %>% dplyr::filter(is.na(Intensity)) data$SampleID ...
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############################################################ ### Flight height calculation module ### v 0.0.1 ### Grant Humphries, Ruth Peters-Grundy ### April, 2020 ### R version 3.6.3 "Holding the Windsock" ########################################################### # Load libraries -------------------------------...
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par <- read.csv("parole.csv") str(par) summary(par) # male: 1 if the parolee is male, 0 if female # race: 1 if the parolee is white, 2 otherwise # age: the parolee's age (in years) when he or she was released from prison # state: a code for the parolee's state. 2 is Kentucky, 3 is Louisiana, 4 is Virginia, and 1 is an...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/qtl_fastqtl.R \name{importFastQTLTable} \alias{importFastQTLTable} \title{Import fastQTL output table into R.} \usage{ importFastQTLTable(file_path) } \arguments{ \item{file_path}{Path to the fastQTL output file} } \value{ data_frame containi...
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pc.skel <- function(dataset, method = "pearson", alpha = 0.05, rob = FALSE, R = 1, graph = FALSE) { ## dataset contains the data, it must be a matrix ## type can be either "pearson" or "spearman" for continuous variables OR ## "cat" for categorical variables ## alpha is the level of significance, set to ...
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"Hello Testing" var1 <- c(2,4,6,8,10) var2 <- c("Aby","Mary","Danny","James","Lewis") ##adding sex Var3 <- c("F","F","M","M","M")
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# R script # NOTE: uncomment str({var}) to inspect var, use print.nc instead for NetCDF data # Each different section separated by 3 newline # Sys.setenv('MC_CORES' = 3L) # required library library('RNetCDF') # library('parallel') # library('dplyr') # Read train data train <- read.csv('./input/train.csv') # str(tra...
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data(neuroblastoma,package="neuroblastoma") data(neuroblastomaDetailed,package="bams") annotation.sets <- list(original=neuroblastoma$annotations, detailed=neuroblastomaDetailed) ## standardize annotation levels. standard <- c(breakpoint=">0breakpoints", normal="0breakpoints") fo...
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library(minval) ### Name: downloadChEBI ### Title: Download the ChEBI database ### Aliases: downloadChEBI ### ** Examples ## Not run: ##D # Download ChEBI database with associations ##D ChEBI <- downloadChEBI(release = '142') ##D ##D # Download ChEBI database without associations ##D ChEBI <- downloadChEBI(releas...
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mylist = c(1354, 2028, 2690, 3502, 2882, 3182, 3434, 4064, 4158, 4009, 4698, 4523, 2318, 2024, 1639, 1366, 1228, 894, 835, 952, 447, 385, 442, 782) temp = c(0.24, 0.46, 0.95, 1.4, 1.14, 0.73, 0.58, 0.62, 0.49, 0.29, 0.24, 0.18, 0.08, 0.07, 0.06, 0.04, 0.05, 0.04, 0.04, 0.07, 0.04, 0.05, 0.07, 0....
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## ------------------------------------------------------------------------ a=rnorm(10) a ## ------------------------------------------------------------------------ matrix(1:6, 2, 3) ## ------------------------------------------------------------------------ x=rnorm(10) y=rnorm(10) plot(x,y) ## ----Code chunk1, ech...
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#### Pre-Analysis #### rm(list=ls()) gc() source("./R/util.R") require_libraries(c( "Matrix" ,"pROC" ,"xgboost" ,"dplyr" ,"tidyr" ,"magrittr" )) pat_tbl<-readRDS("./data2/pat_episode2.rda") fact...
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.libPaths(c("C:/Marion/Rstudio/packages_install",.libPaths())) library(pls) source(file = "C:/Marion/T2S_LabStatistics/MOTI_NTS_analysis/MOTI_regressions/moti_reg_facto.R") ##for functions ##trying principal components regression data<-read.table("C:/Marion/T2S_LabStatistics/SOA/total_cleaned_data.csv",header=TR...
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#' Makes raw cash flow data usable and readable. #' #' Processes raw cash flow data from quantmod to return #' a tidied data frame. Raw cash flow data must be formatted #' in a list such that every element is a data frame or #' matrix containing quantmod data. #' #' \code{tidy_cashflows} produces a data frame that ...
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library(Evapotranspiration) ### Name: ET.GrangerGray ### Title: Granger-Gray Formulation ### Aliases: ET.GrangerGray ### Keywords: Granger-Gray evapotranspiration open-water evaporation ### potential evapotranspiration ### ** Examples # Use processed existing data set and constants from kent Town, Adelaide data("...
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library(gllvm) library(tidyverse) library(lattice) library(janitor) library(ggpubr) library(ggplotify) #read in data created in Traits.R df <- read.csv("Data/Processed/ALLdata.csv") %>% select(-c(X)) %>% mutate(Burnt = Fire =="Burnt") %>% mutate(Rainforest = Formation =="Rainforest") #make some string change...
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library(ggplot2) library(dplyr) library(ggmap) library(stringr) library(tidyr) library(shiny) crime=read.csv("crime.csv") la_map = get_map(location = "Los Angeles", zoom = 10) crime$VICTIM.DESCENT = factor(ifelse(crime$VICTIM.DESCENT == "B", "Black", ifelse(crime$VICTIM.DESCENT == ...
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library(tidyverse) library(BuenColors) # Choose Color Palette THE_PALETTE <- jdb_palette("solar_rojos") # Import data enrichments <- fread("../data/ldsc/MPN_meta_finngen_r4_ukid_heme_1000GP3_UK10K.cell_type_results.txt") %>% dplyr::rename(pvalue = "Coefficient_P_value") # Set up coordinates cellCoordsDF <- data.fr...
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############################################################################## # Test of the Spike test # Catherine Schmechtig # September 2020 ############################################################################## library(ncdf4) library(stringr) source("./read_VSS.R") source("./RunningFilter.R") source("./...
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remove(list=ls()) dev.off() file<-file.choose() bc<- read.csv(file, na.strings = "?", colClasses=c("Infected"="factor" )) is.factor(bc$Class) bc_clean<-na.omit(bc) index<-sort(sample(nrow( bc_clean),round(.30*nrow(bc_clean )))) training<- bc_clean[-index,] test<- bc_clean[index,] library(kknn) predict_k1 <- kknn(for...
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6 media e mediana na pratica.R
################################### #Média e mediana na prática # #Prof. Ariel Gustavo Letti # #Minicurso R - IV ENBIO # ################################### #Carregando os dados: setwd("C:/R_Enbio") dir() dados<-read.table("inseto.txt", h=T) summary(dados) ########################...
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# library(pracma) dat <- read.table('C:/Users/jflores/Documents/JORGE/ECOGRANJA_WALLPAKUNA/terreno/Alita.csv', header = F, sep = ';') plot(dat[,2], dat[,1], type = 'l') # for(i in 1:dim(dat)[1]){ # points(dat[i,2], dat[i,1], col = 'red') # print(i) # Sys.sleep(time = 1) # } # library(geosphere) # lon <- c(-81, ...
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print.letter <- function(label="(a)",xy=c(0.1,0.925),...) { tmp <- par("usr") text.x <- tmp[1]+xy[1]*diff(tmp[1:2]) #x position, diff=difference text.y <- tmp[3]+xy[2]*diff(tmp[3:4]) #y position text(x=text.x, y=text.y, labels=label, ...) } ##########################################################...
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## This script compiles data tables for FIA lichen plots into: ## master : a data table with all variables from 2228 plots ## model_data : data from plots used in models from all plots without any data missing, includes PCA variables ## trans_data : environmental data log or sqrt transformed to reduce skew ## working_d...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/classify.R \name{classify} \alias{classify} \title{Function to classify gauge time-series (zoo object) based on some prescribed aggregation level.} \usage{ classify(gauge.ts, aggregation_level = "season") } \arguments{ \item{gauge.ts}{A zoo o...
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suppressMessages(library(data.table)) suppressMessages(library(zoo)) suppressMessages(library(moments)) suppressMessages(library(lubridate)) #Question 1 CRSP_Bonds<-fread("C:/Nakul/UCLA Coursework/Spring 2018/QAM/PS_2/4f31512f6a62c031.csv") #Loading downloaded data without edits #head(CRSP_Bonds) PS2_Q1 <- f...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/peloton_api.R \name{peloton_api} \alias{peloton_api} \title{Makes a \code{GET} request against one of Peloton's API endpoints} \usage{ peloton_api(path, print_path = FALSE, ...) } \arguments{ \item{path}{API endpoint to query} \item{print_pa...
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## load dataset in R ## load data from the dates 2007-02-01 and 2007-02-02 ## convert the Date and Time variables to Date/Time classes in R using ## the strptime() and as.Date() functions ## in this dataset missing values are coded as ? load_data <- function() { ## Change working directory setwd("D:/Study/DS...
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library(shiny) options(stringsAsFactors = FALSE) library('dplyr') library('data.table') library("stringi") library("ggplot2") # tu dane nie zależące od imputu wd <-"C:\\Users\\Bartek\\Desktop\\pd3\\" ### STUDENTS ## Loading data #Gaming ...
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s <- ggplot(data = movies, aes(x = BudgetMillions)) s + geom_histogram(binwidth = 10, fill="Red")# setting red color s + geom_histogram(binwidth = 10, aes(fill=Genre), colour= "Black")#color is used to set color of border. s + geom_density(aes(fill=Genre), position = "stack") t <- ggplot(data = movies...
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# pd06 #mapa kolorow library(ggplot2) library(plotly) library(shiny) v <- seq(from=0, to=255, by=51) db <- expand.grid(v,v,v) names(db) <- c("r", "g", "b") db$kolor <- rgb(db$r,db$g,db$b, maxColorValue = 255) p <- plot_ly(data=db, x=~r, y=~g, z=~b, text=~kolor, marker=list(color=~kolor)) p
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######################## build ######################## evaluate the matrix for inner product build=function(d.bu){ result=indices(d.bu) I.bu=result[,1];J.bu=result[,2];K.bu=result[,3] m.bu=(d.bu+1)*(d.bu+2)/2 Mat.bu=matrix(0,m.bu,m.bu) for (j in 1:m.bu){ for(k in 1:m.bu){ Mat.bu[k,j]=choose(I.bu[j]...
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#' Create One Type Of Chart for Bulletin #' #' @param datatable placeholder #' @param plotfilename placeholder #' @param plotwidth placeholder #' @param plotnrow placeholder #' @param plotheight placeholder #' @param plotxlabel placeholder #' @param plotylabel placeholder #' @param plottitle placeholder #' @param plots...
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# # Prepare the repository list for scraping # source("scrape.R") source("include/db.R") ConsolidateRepoList <- function() { }
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`model.fit` <- function(topology, times, half_life_values, vy_values, response, me.response=NULL, fixed.fact=NULL,fixed.cov=NULL, me.fixed.cov=NULL, mecov.fixed.cov=NULL, random.cov=NULL, me.random.cov=NULL, mecov.random.cov=NULL, intercept="root", ultrametric=TRUE, support=NULL, convergence=NULL) { # SET DEFAULTS ...
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higher_terms <- function(df,k_max) { names <- character() predictors = c("MSSubClass","LotFrontage","LotArea","OverallQual","OverallCond" ,"YearBuilt","YearRemodAdd","BsmtFinSF1","BsmtFinSF2","BsmtUnfSF","1stFlrSF","2ndFlrSF" ,"LowQualFinSF","BsmtFullBath","BsmtHalfBath","Full...
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corr <- function(directory, threshold = 0) { files <- list.files(directory) cors <- numeric() for(i in 1:length(files)) { data <- read.csv(paste(directory,files[i],sep="/")) data <- data[!is.na(data$sulfate) & !is.na(data$nitrate), ] if (nrow(data) > threshold) { cors <- c(cors, cor(data$nitrate...
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#' stan_glmer() which transformes Z matrix with Lt stan_adapt <- function (formula, data = NULL, family = gaussian, subset, weights, na.action = getOption("na.action", "na.omit"), offset, contrasts = NULL, ..., prior = normal(), prior_intercept = normal(), prior_aux = exp...
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###################### # Comparing significant CpGs from EWAS to LaWAS results # # Author: Alexander Titus # Created: 08/20/2018 # Updated: 08/20/2018 ###################### ##################### # Set up the environment ##################### require(data.table) library(glmnet) #############...
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## Compare the mapped and the true location of a read. The mapped coordinates ## including splice junctions are considered. library(rtracklayer) library(GenomicAlignments) library(stringr) library(dplyr) library(GenomicFeatures) library(data.table) BAM <- snakemake@input[["bam"]] GTF <- snakemake@input[["gtf"]] SIM_I...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/slopesolvers-package.R \docType{package} \name{slopesolvers-package} \alias{slopesolvers} \alias{slopesolvers-package} \title{slopesolvers: A Suite of Solvers with Associated Functions for SLOPE} \description{ A set of solvers for SLOPE to co...
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library(dplyr) library(ggplot2) library(ggthemes) library(ggrepel) library(stringr) library(grid) library(reshape2) theme <- theme_few(base_size = 24) + theme(axis.title.y=element_text(vjust=0.9), axis.title.x=element_text(vjust=-0.1), axis.ticks.x=element_blank(), text=element_text(family="serif"), legend....
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\name{MTi} \alias{MTi} \title{ Matriz triangular superior con entradas aleatoria enteras} \description{ Función para crear una matriz superior aleatoria} \usage{ MTi(n, a, b) } \arguments{ \item{n}{ Tamaño de matriz} \item{a}{ Límite inferior del intervalo} \item{b}{ Límite superior del intervalo} } \examples{M...
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Regression Template.R
#Regression Template #Importing the dataset dataset = read.csv("Position_Salaries.csv") dataset = dataset[2:3] #Splitting the data into Training and Test set #install.packages("caTools") #library(caTools) #set.seed(123) #split = sample.split(dataset$Purchased, SplitRatio = .8) #training_set = subset(datase...
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library(shiny) shinyUI(fluidPage( titlePanel(title = "EPL Stats Season: 2014"), sidebarLayout( sidebarPanel( sliderInput("teams", "Top n-teams", 2,20,1,pre = "Top ", post=" teams"), selectInput("column", "Choose a Statistic", choices = c("Shots Per Game"=1,"Possession %"=2, "Pass Success"="", "A...
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cachematrix.R
## The pair of below function uses lexical scoping rules to to cach the inverse ## of a Matrix. Please not that the nomenclature has been kept the same as the ## example for this assignment. To get inverse of a matrix say "MAT" ## type MAT$getinv() and to set inverse MAT$setinv(). ## example for creating a matrix...
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main.R
## Assignment 2 ## ## Renewables in electricity market ## ## Author : Florian Guillebeaud ## ################################### ################################### setwd("~/Documents/DTU/B_Semester-2/31761_Renew_ElectricityMarkets/Assignments/Assignment2") ################################### ####################...
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/intial R code.r
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intial R code.r
#LIBRARIES library(TSA) library(forecast) library(foreach) library(doSNOW) library(doParallel) library(plyr) #Custom Function for fitting automatically chossing the best model between ARIMA and ETS fitting.function <- function(x, h){ temp.mod.arima <- auto.arima(x, seasonal = TRUE) temp.mod.ets <- ets(x) if((tem...
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token.R
token <- function(x) { UseMethod("token") } token.xml_node <- function(x) { token(xml2::xml_name(x)) } token.character <- function(x) { gsub("[^a-z]", "_", tolower(x)) }
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RandomForest.R
rm(list=ls(all = T)) set.seed(1000) Sys.setenv(TZ="Africa/Johannesburg") library(ggplot2) library(randomForest) library(tikzDevice) library(caret) library(xtable) source("HelpFunctions.R") exportspath <- "../exports/tree_based_methods/randomforest/" # read in data data <- read.csv("../data/Train_Digits_20171108.csv"...
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alvesmarcos/deep-learning
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perceptron.R
library(ggplot2) threshold <- function(y) { ifelse(y>0, 1, 0) } activation_func <- function(z, func) { switch(func, 'degrau' = ifelse(z>0, 1, 0), 'sigmoid' = 1/(1+exp(-z)), 'tanh' = (2/(1+exp(-2*z)))-1, 'relu' = ifelse(z>0, z, 0)) } forward <- function(w,b,x_i) { z = (x_i%*%t(w)) + b activat...
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Generate_clean_golden_set.R
# load the online golden set ##### #parish = 'muyembe' #parish = 'nsiika' #parish = 'nyatoto' #parish = 'magunga' # parish = 'ogongo' #parish = 'mitooma' #parish = 'rugazi' #parish = 'nsiinze' #parish = 'nankoma' #parish = 'kisegi' #parish = 'kitwe' #parish = 'rubaare' #parish = 'nyamrisra' parish = 'kitare' golden_s...
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lcheeme1/ExData_Plotting1
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plot2.R
library(dplyr) library(lubridate) mydata <- read.csv("household_power_consumption.txt", sep=";") startDate <- ymd("2007-02-01") endDate <- ymd("2007-02-03") mydata <- mutate(mydata, DateTime = dmy_hms(paste(as.character(Date), " ", as.character(Time)))) mydata <- filter(mydata, DateTime >= startDate) mydata <- filte...
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geiser/rachel-imi-evaluation
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2020-03-18T04:35:01.893755
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01-removing-careless-motivation.R
wants <- c('readr', 'dplyr', 'devtools','readxl') has <- wants %in% rownames(installed.packages()) if (any(!has)) install.packages(wants[!has]) if (!any(rownames(installed.packages()) %in% c('careless'))) { devtools::install_github('ryentes/careless') } library(daff) library(readr) library(dplyr) library(careless) l...
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SuruthiVinothKannan/RBasics
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Dataset_operators.R
# Creating Subset of data getwd() install.packages("openxlsx") library(openxlsx) test=read.xlsx("Revenue_dataset.xlsx") dim(test) head(test,10) #default of head()& tail() 6 records tail(test,15) subset=test[100:105,] dim(subset) names(subset) str(subset) rm(may_subset) # To remove a dataset ...
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samplePlotCompilation.R
#' Compile sample and plot level information #' #' #' @description This function is to compile sample and plot information. #' #' @param compilationType character, either \code{PSP} or \code{nonPSP}. If it is \code{PSP}, it #' is consistent with original PSP compiler, otherwise, it #' ...
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ottoman91/_sc-evictions_
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sc_cities_sc_city_boundaries.R
# Script that joins the Eviction Data for South Carolina cities with the City Boundaries # Author: Usman Khaliq # Version: 2020-01-30 # Libraries library(tidyverse) # Parameters path_sc_cities <- "data/sc_cities.rds" path_sc_city_boundaries <- "data/sc_city_boundaries.rds" rds_file_path <- "data/sc_cities_sc_city_bo...
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alightner/acculturationMarketInt_trust2020
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dictionary.R
# dictionary -------------------------------------------------------------- var_dict <- c( "id"="id", "age"="age", "sons"="sons", "daughters"="daughters", "farms"="farming", "donkeys"="donkeys", "chickens"="chickens", "cattle"="cattle", "goats"="goats", "sheep"="sheep", "TLU"="TLU", ...