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//example 4.12 //plot IDF curve for return period of 10,2 and 1 years using california formula clc;funcprot(0); //given t=[5 10 20 30 60 90 120]; //duration //value of P for respective return period is p10=[10.6 14.7 19.3 20.8 25.5 29 34.7]; //rainfall for T=10 years p2=[8.2 10.3 13.2 14.2 16.6 19.4 21.4]; //rainfall for T=2 years p1=[3.5 6.2 8.9 10 13.2 15 16.5]; //rainfall for T=1 year for i=1:7 i1(i)=p10(i)*60/t(i); //intensity of rainfall with return period of 10 years i2(i)=p2(i)*60/t(i); //intensity of rainfall with return period of 2 years i3(i)=p1(i)*60/t(i); //intensity of rainfall with return period of 1 year end //graph is plotted between //t and i1 //t and i2 //t and i3
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//caption:gain_phase_plot //example 7.17.18 //page 256 k=1; s=%s; G=syslin('c',k/(s*(0.5*s+1)*(0.25*s+1))); // freq range to plot fmin=0.1; fmax=7; black(G, fmin, fmax) xgrid xtitle('Gain phase plot') disp("for GM=8 db, K=2.23") disp("for PM=20 deg. , K=2.69")
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//Example 6.4: clc; clear; close; //given data : I_DES=8.7;// in mA V1=-3;// in V V_GS=-1;// in V ID=I_DES*(1-(V_GS/V1))^2; format('v',6) disp(ID,"(i). ID(mA) = ") gmo=-(2*I_DES/V1); format('v',4) disp(gmo,"(ii). gmo(mS) = ") gm=gmo*(1-(V_GS/V1)); format('v',6) disp(gm,"(iii). gm(mA) = ")
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disp('chapter 12 ex12.7') disp('given') disp("voltage regulator to have o/p voltage=18V") Vo=18 disp("I2>>error amplifier input bias current") disp("Let I2=1mA") I2=0.001 disp("Vr2=Vref=7.15") Vr2=7.15 Vref=7.15 disp("R2=Vref/I2") R2=Vref/I2 disp('ohms',R2) disp("use 6.8 kohm std value") R2=6800 disp("I2=7.15/6.8k") I2=7.15/6800 disp('amperes',I2) disp("R1=(Vo-Vr2)/I2") R1=(Vo-Vr2)/I2 disp('ohms',R1) disp("use 10 kohm std value") R1=10000 disp("for satisfactory operatiom of series pass transistor") disp("Let Vs-Vo=5V Vs=Vo+5 ") Vs=Vo+5 disp('volts',Vs) disp("Inteernal circuit current is approximately ") disp("I=Istandby+Iref=25mA") I=0.025 disp("Internal power dissipation excluding series pass transistor ") disp("Pi=(Istandby+Iref)*Vs") Pi=(I)*Vs disp('watts',Pi) disp("Maximum power dissipated in series pass transistor") disp("P=(specified Pdmax)-Pi Pdmax=1000mW") Pdmax=1 P=Pdmax-Pi disp('watts',P) disp("Maximum load current=P/(Vs-Vo)") Ilmax=P/(Vs-Vo) disp('amperes',Ilmax)
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clear //Given F=50 //HZ L=0.06 C=6.8 l=10**6 R=2.5 Ev=230 //V //Calculation // Xl=2*%pi*F*L Xc=l/(2*%pi*F*C) Z=sqrt(R**2+(Xl-Xc)**2) Iv=Ev/Z a=(Xl-Xc)/R a2=-atan(a)*180.0/3.14 P=R/Z P1=Ev*Iv*P //Result printf("\n (i) Circuit impedence is %0.1f ohm",Z) printf("\n (ii) Circuit current is %0.3f A",Iv) printf("\n (iii) Phase angle is %0.1f degree lead",a2) printf("\n (iv) Power factor is %0.4f lead",P) printf("\n (v) Power consumed is %0.2f W",P1)
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//Chapter 13 //page no 569 //given clc; clear all; Vu3=1.24; //in V Vbeq3=0.7; //in V Vbeq4=0.7; //in V R5=17.5; //in Ohm R6=17.5; //in Ohm Voh=5; //in V Vol=0; //in V If=(Vu3-Vbeq3)/R5+(Vu3-Vbeq4)/R6; printf("\n If= %0.1f mA\n",If*1000); R3=(Voh-Vol)/If; printf("\n R3= %0.0f ohm\n",R3); C4=2*10^-9/R3; printf("\n C4= %0.0f pF\n",C4*10^12); //Chapter 13 //page no 581 //given disp("Page number 581 again Example 13-2 (numbering mistake)") Er=4.9; h=5; //in mils w=10; //in mils t=0.5; //in mils Z=60/sqrt(0.475*Er+0.67)*log(4*h/0.67/(0.8*w+t)); printf("\n Z = %0.1f ohm\n",Z); tpd=1.017*sqrt(0.475*Er+0.67); printf("\n tpd = %0.2f ns/ft\n",tpd); Tpd=tpd*1000/12; //converted into ps/in printf("\n tpd = %0.2f ps/in\n",Tpd); Co=Tpd/Z; printf("\n Co = %0.1f pF/in\n",Co);
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//angl1AzimutDeg xmaxi =40;//dim du reseau de points ymini=-25 ymaxi=10 vmaxi=100;//potentiel max nbcourbe=20;//nb d equipotentielles a tracer pas=.1;//finesse du trace erreurmax=.1 ;//precision d arret // v; // diffmax;//variation max du potentiel global v function initialisee() /*affecte au potentiel une valeur de 0...*/ // i;j; // valeur; for j=ymini:0 for i=-1:xmaxi v(i,j)=0; end end for j=1:ymaxi valeur=j*vmaxi/ymaxi; for i=-1:xmaxi v(i,j)=valeur; end end endfunction function moyenne(i,j) global aux aux=v(i,j) v(i,j)=(v(i-1,j)+v(i+1,j)+v(i,j-1)+v(i,j+1))/4 if (v(i,j)>1e-6) then delta=abs((aux-v(i,j))/v(i,j) ); else delta=5; end if (delta>diffmax) then diffmax=delta; end endfunction function calcule() /***/ // i;j; // aux;delta; diffmax=0 for j=1:ymaxi-1 for i=0:xmaxi-1 moyenne(i,j); end end // for i=0:(xmaxi div 3)-1 for i=0:(int(xmaxi/3))-1 moyenne(i,0); end for j=ymini+1:-1 for i=0:xmaxi-1 moyenne(i,j) end end for j=ymini+1:ymaxi-1 v(-1,j)=v(1,j) end endfunction function [y]=absc(x) y= round(xmaxi*(1+x/xmaxi)/2) endfunction function res=ordo(y) exec('D:\POUB\pascal_to_scilab_simulations\c.2.3.4.laplace.sce', -1) res=ymaxi-round((y-ymini)*ymaxi/(ymaxi-ymini)) endfunction function tracee(a,b,c,d,e) //clf(); exec('D:\POUB\pascal_to_scilab_simulations\c.2.3.4.laplace.sce', -1) //x=[0:0.1:2*%pi]'; x=[absc(a),absc(c)] y=[ordo(b),ordo(d)] x y plot2d(x,y); x=[absc(-a),absc(-c)] y=[ordo(b),ordo(d)] x y plot2d(x,y); endfunction function equipotboucl() i=int(x) j=int(y) dx=v(i,j)-v(i-1,j) dy=v(i,j)-v(i,j-1) d=sqrt(dx*dx+dy*dy) dx=dx*pas/d dy=dy*pas/d tracee(x,y,x-dy,y+dx,2) x=x-dy y=y+dx endfunction function equipot(t) x=xmaxi y=ymaxi*t equipotboucl() while(x<=0), equipotboucl() end endfunction function dessine() exec('D:\POUB\pascal_to_scilab_simulations\c.2.3.4.laplace.sce', -1) tracee(xmaxi,ymini,xmaxi,ymaxi,1) tracee(int(xmaxi/3),0,xmaxi,0,1) tracee(0,ymini,xmaxi,ymaxi,1) tracee(0,ymaxi,xmaxi,ymaxi,1) for i=1:nbcourbe, equipot((i-.5)/nbcourbe); end endfunction function calwrit() calcule() //:4 round(100*diffmax) endfunction initialisee() //idem do while calwrit() while diffmax<erreurmax calwrit() ; end
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P=1000//in kN Pu=1.5*P//in kN fck=15//in MPa fy=415//in MPa l=3.5//unsupported length, in m //assume 1% steel Ag=Pu*10^3/(0.4*fck*0.99+0.67*fy*0.01)//in sq mm L=sqrt(Ag)//assuming a square column L=420//in mm emin=l*10^3/500+L/30//in mm ep=0.05*L//=emin, hence OK Asc=0.01*L^2//in sq mm //provide 6-20 mm dia bars Asc=6*0.785*20^2//in sq mm mprintf("Summary of design:\nColumn size - %d x %d mm\nSteel-main = 6-20 mm dia bars",L,L)
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//scilab 5.4.1 clear; clc; printf("\t\t\tProblem Number 11.10\n\n\n"); // Chapter 11 : Heat Transfer // Problem 11.10 (page no. 566) // Solution //A bare steel pipe ro=90; //Outside diameter //Unit:mm ri=75; //inside diameter //Unit:mm Ti=110; //Inside temperature //Unit:Celcius To=40; //Outside temperature //Unit:Celcius L=2; //Length //Unit:m deltaT=Ti-To; //Change in temperature //Unit:Celcius k=45 //Unit:W/(m*C) //k=proportionality constant //k=thermal conductivity Q=(2*%pi*k*L*deltaT)/log(ro/ri); //The heat loss from the pipe //unit:W printf("The heat loss from the pipe is %f W",Q);
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//[]=warning(txt) // //! write(%io(2),'WARNING:' +txt) //end
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//Chapter 5, Problem 18 clc f=100e6 //frequency in hertz cp=100e-12 //capacitance in farad rp=15e3 //resistance in ohm //calculation qp=2*%pi*f*cp*rp printf("Quality factor Qp = %.2f",qp)
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// Copyright (c) 2017, Linz Center of Mechatronics GmbH (LCM) http://www.lcm.at/ // All rights reserved. // // This file is licensed according to the BSD 3-clause license as follows: // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions are met: // * Redistributions of source code must retain the above copyright // notice, this list of conditions and the following disclaimer. // * Redistributions in binary form must reproduce the above copyright // notice, this list of conditions and the following disclaimer in the // documentation and/or other materials provided with the distribution. // * Neither the name of the "Linz Center of Mechatronics GmbH" and "LCM" nor // the names of its contributors may be used to endorse or promote products // derived from this software without specific prior written permission. // // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND // ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED // WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. // IN NO EVENT SHALL "Linz Center of Mechatronics GmbH" BE LIABLE FOR ANY // DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES // (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; // LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND // ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT // (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS // SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. // // This file is part of X2C. http://www.mechatronic-simulation.org/ // $LastChangedRevision: 1111 $ // $LastChangedDate:: 2017-02-28 14:18:07 +0100#$ // // Returns name of open diagram function [System] = getCurrentSystem() jimport org.scilab.modules.xcos.Xcos; Xcos = jinvoke(Xcos, "getInstance"); OpenDiagrams = jinvoke(Xcos, "openedDiagrams"); if isVersionLessThan("5.5.0") then NrOfDiagrams = junwrap(jinvoke(OpenDiagrams, "size")); else NrOfDiagrams = jinvoke(OpenDiagrams, "size"); end // check the number of open diagrams if NrOfDiagrams < 1 then disp("No open diagram found!"); System = ""; elseif NrOfDiagrams > 1 then disp("More than one open diagram found, don''t know which to choose!"); System = ""; else // exactly one open diagram was found Diagram = jinvoke(OpenDiagrams, "get", 0); if isVersionLessThan("5.5.0") then System = junwrap(jinvoke(Diagram, "getTitle")); else System = jinvoke(Diagram, "getTitle"); end end endfunction
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function x = moc_gaussian(n, w) // Generate an n-point gaussian convolution window //Calling Sequence // w = moc_gaussian (n, a) // Description // Generate an n-point gaussian convolution window of the given // width. Use larger a for a narrower window. Use larger n // for longer tails. // // w = exp ( -(a*x)^2/2 ) // // for x = linspace ( -(n-1)/2, (n-1)/2, n ). // // Width a is measured in frequency units (sample rate/num samples). // It should be f when multiplying in the time domain, but 1/f when // multiplying in the frequency domain (for use in convolutions). // Authors // Paul Kienzle - 1999 // Holger Nahrstaedt - 2014 // Copyright (C) 1999 Paul Kienzle <pkienzle@users.sf.net> // // This program is free software; you can redistribute it and/or modify it under // the terms of the GNU General Public License as published by the Free Software // Foundation; either version 3 of the License, or (at your option) any later // version. // // This program is distributed in the hope that it will be useful, but WITHOUT // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or // FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more // details. // // You should have received a copy of the GNU General Public License along with // this program; if not, see <http://www.gnu.org/licenses/>. [nargout,nargin]=argn(0); if nargin < 1 | nargin > 2 error("x = moc_gaussian(n, w)"); end if nargin == 1, w = 1; end x = exp(-0.5*(([0:n-1]'-(n-1)/2)*w).^2); endfunction
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5_14data.sci
S=15.79;//wing area in m^2 L=80000;//lift produced by wing V=402.34*5/18;//velocity of airplane(m/s) D=1.225;//density at sea level(Kg/m^3) q=D*V^2/2 //dynamic pressure at sea level(N/m^2)
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ex5.sce
clear clc disp('the probability of 53 sundays is 2/7=') 2/7
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Ex11_1.sce
clc //initialization of new variables clear r=0.3 //m w=3000 //RPM Cz=61 //m/s th=45 //degrees //calculations U=%pi*2*r*w/60 beta1=atan(U/Cz) beta1=beta1*180/%pi beta2=th DCth=U-Cz //results printf('Beta_1 = %d degrees',beta1)
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clc clear //INPUT DATA ni=2.1*10^19//intrinsic charge carriers in m^-3 me=0.4//electron mobility in m^2 V^-1 s^-1 mh=0.2//hole mobility in m^2 V^-1 s^-1 d=4.5*10^23//density of boron in m^-3 e=1.6*10^-19//charge of electron in coulombs //CALCULATION C=(ni*e)*(me+mh)//conductivity before adding boron atoms in ohm^-1 m^-1 c=(d*e*mh)/10^4//conductivity after adding boron atoms in ohm^-1 m^-1 *10^4 //OUTPUT printf('Before adding boron atoms,the semiconductor is an intrinsic semiconductor \n conductivity before adding boron atoms is %3.3f ohm^-1 m^-1 \n Aefore adding boron atoms,the semiconductor becomes a P-type semiconductor \n conductivity after adding boron atoms is %3.2f*10^4 ohm^-1 m^-1',C,c)
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Ex9_1.sce
clc; R2=2200; //ohm R1=10000; //ohm Vcc=10; //volt Vb=Vcc*(R2/(R1+R2)); //volt Ve=Vb-0.7; //volt Re=1000; //ohm Ie=Ve/Re; //Ampere re=0.025/Ie; //Ohm disp('ohm',re,"re=");//The answers vary due to round off error
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errcatch(-1,"stop");mode(2);//Caption:Find the load shared by two DC generators //Exa:2.2 ; ; E_g1=120;//in volts E_g2=115;//in volts R_a1=0.05;//armature winding resistance of first generator (in ohms) R_a2=0.04;//armature winding resistance of second generator (in ohms) R_f1=20;//feild winding resistance of first generator (in ohms) R_f2=25;//feild winding resistance of seccond generator (in ohms) P=25000;//in watts V_t=(5275+sqrt((5275^2)-(4*45.09*25000)))/(2*45.09);//terminal voltage in volts I_1=(E_g1-(V_t*(1+(R_a1/R_f1))))/R_a1;//in amperes I_2=(E_g2-(V_t*(1+(R_a2/R_f2))))/R_a2;//in amperes P_1=V_t*I_1/1000;//in kilo watts P_2=V_t*I_2/1000;//in kilo watts disp(P_1,'Power shared by generator-1(in Kilo Watts)= '); disp(P_2,'Power shared by generator-2(in Kilo Watts)= '); exit();
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Exa8_2.sce
//Exa 8.2 clc; clear; close; //Given data format('v',5); L=100;//in uH L=L*10^-6;//in H f1=500;//in kHz f1=f1*10^3;//in Hz f2=1500;//in kHz f2=f2*10^3;//in Hz //Formula : f=1/(2*%pi*sqrt(L*C)) C1=1/(4*%pi^2*f1^2*L);//in F C2=1/(4*%pi^2*f2^2*L);//in F disp("Range of capacitor : "+string(C2*10^12)+" pF to "+string(C1*10^12)+" pF");
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Example_4_5.sce
//A Textbook of Chemical Engineering Thermodynamics //Chapter 4 //Second Law of Thermodynamics //Example 5 clear; clc; //Given: m = 2; //mass of gas(kg) T1 = 277; //initial temperature(K) T2 = 368; //final temperature(K) Cv = 1.42; //specific geat at constant volume(kJ/kg K) //To determine change in entropy //Using equation 4.31 (Page no. 94) S = (m*Cv*log(T2/T1)); //change in entropy(kJ/K) mprintf('Change in entropy is %f kJ/K',S); //end
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9_5.sce
F2=850 F1=400 lambda=123.6/180*%pi ppp=1.408/1000 theta=%pi-lambda Fr=sqrt(F1*F1+F2*F2-2*F1*F2*cos(theta)) fluxr=2/%pi*ppp*Fr disp(fluxr)
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4_6.sce
//Example 4.6 //MAXIMA SCILAB TOOLBOX REQUIRED FOR THIS PROGRAM clear; clc ; close ; syms n z; f1=1; F1= symsum (f1*(z^(-n)),n ,-%inf, -1 ); f2=(0.5)^n; F2= symsum (f2*(z^(-n)),n ,0,%inf ); //Display the result in command window F=F1+F2; disp (F,"Z-transform of f(n) is:"); disp('ROC is the Region 0.5 < mod(z) <1 ')
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Ex8_18_4.sce
clear clc n1=2;// F=96500;//in C E=0.490//in V DelG=-(n1*F*E);//free energy change in J printf('DelG=%.1f J',DelG) T=298;//in K dEdT_p=-(1.86*10^-4);//in V/K DelH=-(n1*F*(E-(T*dEdT_p)));//enthalpy change in J printf('\nDelH=%.1f J',DelH) DelS=(n1*F*dEdT_p);//entropy change in J/K printf('\nDelS=%.2f J/K',DelS) //page 483
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Ex2_8.sce
clc; //page 99 //problem 2.8 //Given, probability density function of X is fX_x where fX_x = a*e^(-0.2*x) for x greater than & equal to 0 & = 0 eleswhere //a = fX_x/(a*e^(-0.2*x)) //from definition integration of fX_x with limits -infinity to +infinity is 1 //As per given fX_x, integration of a*e^(-0.2*x) with limits 0 & +inffinity and obtained value be P //a = 1/p P = integrate('%e^(-0.2*x)','x',0,100) a = 1/P disp('a = '+string(a))
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Ex1_15.sce
//Variable declaration Vt=1 Vl=12 Vm=63.63 //peak voltage(V) as Vm=sqr root of 2*45 Idc=8. //charging current(A) //Calculations //Part a theta1= asind((Vt+Vl)/Vm) theta2=180-theta1 //Rl=((2*Vm*cos(theta1))-(2*(%pi-2*theta1)*(Vt+Vl)))/(Idc*%pi) Rl=(2*sqrt(2)*45*cosd(11.8) - (2*(%pi-2*0.206)*(Vt+Vl)))/(Idc*%pi) function ans = ft(wt) ans =(((((sqrt(2)*45*sin(wt))-(Vt+Vl))/Rl)*wt)**2) endfunction //Part b integ = intg(theta1,theta2,ft) disp ( integ) Irms = (integ/%pi)**0.5 Pl=Irms**2*Rl //power loss in resistance(W) //Part c P=Vl*Idc //power supplied to battery(W) //results printf ("Resistance to be added is %.2f Ohms",Rl) printf ("power supplied to battery is %.f W",P)
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least-square-method.sce
///////////// A função que faz a eliminação Gaussiana será chamada na Least Square function v = Gaussian_Elimination_4(A, b) [n, n] = size(A); [n, m] = size(b); v = zeros(n,m); for e = 1:n-1 m = -A(e+1:n,e)/A(e,e); A(e+1:n,:) = A(e+1:n,:) + m*A(e,:); b(e+1:n,:) = b(e+1:n,:) + m*b(e,:); end; v(n,:) = b(n,:)/A(n,n); for e = n-1:-1:1 v(e,:) = (b(e,:) - A(e,e+1:n)*v(e+1:n,:))/A(e,e); end endfunction ///////////// Limpar a plotagagem anterior com clf, se não dá pau clf ///////////// Inputar os pontos em que o Método será aplicado e o grau do poli pontos = []; for i=0.1:0.1:6.2; pontos = [pontos; i,cos(i)]; poli_power = 4 // ISSO VAI VARIAR P/ CADA EXERCÍCIO end; poli_power = 4 // ISSO VAI VARIAR PARA CADA EXERCÍCIO - SÓ UM EXEMPLO /////////////////////////////////////////////////////////////////////////////// ///////////// Função Least Square Approx ///////////// Eu quero que ela retorne os novos pontos function new_points = Least_Square_Approx(pontos,poli_power) ///////////// Separar as ordenadas e as abcissas dos pontos inputados X_coor = pontos(:,1); Y_coor = pontos(:,2); ///////////// Construção da Matrix A - encontrar o seu tamanho [n_row,n_col]=size(pontos); ///////////// O Vetor b pega a última coluna da matriz Pontos vector_b = pontos(:,n_col); // A primeira coluna da Matriz é formada apenas por dígitos 1 A_matrix_first_col = ones(n_row,1); //Da segunda coluna em diante fica complicado e precisa do grau do poli // Cria uma matriz vazia que, em breve, será apenada A_matrix = []; A_matrix = [A_matrix_first_col,A_matrix]; for i= 1:poli_power; A_matrix = [A_matrix,X_coor.^i]; end; ///////////// Encontrar a transposta de A transpose_A_matrix = (A_matrix)'; ///////////// O produto entre A-transposta e A prod_A_trans_A = transpose_A_matrix*A_matrix; ///////////// O produto entre A-transposta e o vetor b prod_A_trans_b = transpose_A_matrix*vector_b; ///////////// Usar esses produtos como inputs para a Eliminação Gaussiana A_gauss = prod_A_trans_A; b_gauss = prod_A_trans_b; ///////////// Retorna os Coeficientes coef = Gaussian_Elimination_4(A_gauss,b_gauss); ///////////// Novos pontos gerados pelo meu polinômio de aproximação new_points = A_matrix*coef; disp("Imprimir na tela do Console o coeficiente e o grau do polinômio") disp("coef",coef) disp("poli_power",poli_power) endfunction ///////////// Plotar os antigos pontos em um asterisco vermelho ///////////// Plotar os novos pontos gerado pela minha aproximação em bolinhas azuis //////////// Plotar uma linha em AZUL unindo os pontos gerados pela minha aproximação new_points = Least_Square_Approx(pontos,poli_power); plot(pontos(:,1), new_points(:, 1), "ob-" ); plot(pontos(:,1), pontos(:, 2), "*r" ); a = gca(); a.data_bounds = [min(pontos, 'r') - 3; max(pontos, 'r') + 3];
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clear; clc; close; t=0:0.01:6; u=ones(t).*(t>=0); r=2*t.*(t>=0); plot(t,r); xgrid(4,1,7); xlabel("t"); ylabel("r ( t )"); title("Ramp");
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function [s]=%rflss(s1,s2) //[s]=%rflss(s1,s2) <=> s= [s1;s2] [rational;state-space] //! // origine s. steer inria 1987 // [s1,s2]=sysconv(s1,s2);s=[s1;s2]
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clear clc //Example 6.13 RESISTING MOMENT ON REDUCING BEND r1=0.15; //[m] r2=0.475; //[m] d1=0.3; //[m] d2=0.15; //[m] A1=%pi*d1^2/4 //[m^2] A2=%pi*d2^2/4 //[m^2] p1=150*10^3; //[Pa] p2=59.3*10^3; //[Pa] //Torque due to pressure Mp=(r1*p1*A1)+(r2*p2*A2) //[N.m] rho=998; //density[kg/m^3] Q=0.25; //discharge[m^3/s] m=rho*Q //mass flow rate[kg/s] v1=Q/A1 //[m/s] v2=Q/A2 //[m/s] Mi=-m*r1*v1 //moment due to inflow Mo=m*r2*v2 //moment due to outflow //Moment of momentum flow Mm=Mo-Mi d=0.2; //[m] W=1420; //weight[N] //Moment due to weight Mw=d*W //Moment exerted by support M=(-Mp-Mm+Mw)*10^-3 //[kN.m] printf("\n The moment that the support system must resist, M = %.2f kN.m.\n",-M)
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clear// //Variables V1 = 230.0 //primary voltage (in volts) N2byN1 = 1.0/4.0 //Turns ratio RL = 200 //Load resistance (in ohm) fin = 50 //Frequency (in hertz) //Calculation V2 = V1 * N2byN1 //Secondary voltage (in volts) Vm = 2**0.5 * V2 //Maximum value of voltage (in volts) Vdc = 0.636 * Vm //Average value of voltage (in volts) PIV = Vm //peak inverse voltage (in volts) fout = 2 * fin //Output frequency (in volts) //Result printf("\n The dc output voltage is %0.1f V.\nPeak inverse Voltage of a diode is %0.1f V.\nOutput frequency is %0.3f HZ.",Vdc,PIV,fout)
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//To calculate the de Broglie wavelength c = 3*10^8; //velocity of light, m/sec v = (1/10)*c; //velocity of proton, m/sec m = 1.67*10^-27; //mass of proton, kg h = 6.626*10^-34; //planck's constant lamda = h/(m*v); //de Broglie wavelength, m printf("de Broglie wavelength of proton in m is"); disp(lamda);
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mode(0); //PI Controller using trapezoidal approximation. //Heater input is passed as input argument to introduce control effort u(n) //Fan input is passed as input argument which is kept at constant level //Range of Fan input :20 to 252 //Temperature is read function [stop] = pi_fda_virtual(setpoint,fan,K,Ti) global temp heat C0 u_old u_new e_old e_new fdfh fdt fncr fncw m err_count stop q heatdisp fandisp tempdisp setpointdisp limits m x sampling_time e_new = setpoint - temp; Ts=1; S0=K; S1=-K(-1+(Ts/Ti)); u_new = u_old+(S0*e_new)+(S1*e_old); heat=u_new; u_old = u_new; e_old = e_new; [stop,temp] = comm(heat,fan);//Never edit this line plotting([heat fan temp setpoint],[0 0 30 0],[100 100 50 1000]) endfunction
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printf("\t example 18.4 \n"); T1=1100; // F T2=70; // F t1=T1+460; // R t2=T2+460; // R k=27; // from appendix c=0.14; // from appendix row=490; // from appendix alpha=0.394; theta=4; l=10/12; // ft x=0.173*10^(-8); // stefan constant e=0.7; // emmisivity printf("\t values are approximately mentioned in the book \n"); printf("\t for a \n"); // Assume the temperature is 500°F after 4 hr. The coefficient from plate to air is the· sum of the radiation and convection coefficients hri=(e*x*(t1^4-t2^4))/(T1-T2); printf("\t radiation coefficient is : %.1f Btu/(hr)*(ft^2)*(F) \n",hri); // eq 4.32 hci=(0.3*(T1-T2)^(1/4)); // eq 10.10 printf("\t convection coefficient is : %.1f Btu/(hr)*(ft^2)*(F) \n",hci); hti=hri+hci; printf("\t total intial coefficient is : %.1f Btu/(hr)*(ft^2)*(F) \n",hti); // For the 4-hr coefficient at 500°F hr=2.2; // Btu/(hr)*(ft^2)*(F) hc=1.35; // Btu/(hr)*(ft^2)*(F) ht=hr+hc; printf("\t total intial coefficient is : %.1f Btu/(hr)*(ft^2)*(F) \n",ht); h=(hti+ht)/2; printf("\t mean coefficient is : %.1f Btu/(hr)*(ft^2)*(F) \n",h); X=(4*alpha*theta)/(l^2); Y=(h*l)/(2*k); printf("\t X is : %.1f \n",X); printf("\t Y is : %.3f \n",Y); Z=0.42; // Z=f3(X,Y), from fig 18.10 t=T2+((T1-T2)*Z); // eq 18.53 printf("\t t is : %.0f F \n",t); printf("\t for b \n"); Z1=0.43; // Z=f4(X,Y), from fig 18.11 t1=T2+((T1-T2)*Z1); // eq 18.53 printf("\t temperature of center plane is : %.0f F \n",t1); // end
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function ring = compute_vertex_face_ring(face) // compute_vertex_face_ring - compute the faces adjacent to each vertex // // ring = compute_vertex_face_ring(face); // // Copyright (c) 2007 Gabriel Peyre [tmp,face] = check_face_vertex([],face); nfaces = size(face,2); nverts = max(face(:)); ring = cell(nverts,1); ring(nverts).entries = []; for i=1:nfaces for k=1:3 a = ring(face(k,i)).entries; a($+1) = i; ring(face(k,i)).entries = a; end end endfunction
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//Rated torque calculation by resistance addition clc; clear; V=240; I=40; Ra=0.3; N1=1500/60;// speed in rotations per sec N2=1000/60; Pi=V*I;// Power input Pc=(I^2)*Ra; // Copper loss Po=Pi-Pc; T=Po/(2*%pi*N1);// Rated torque R1=V/I; // Back EMF is zero Rex1=R1-Ra; //Eb directly to N(speed) Eb1500=V-(I*Ra); Eb1000=N2*Eb1500/N1; R=poly([0 1],'R','c'); x=(V-Eb1000)-(I*(R+Ra)); // Characteristic equation to find external resistance Rex2=roots(x); printf('The value of the resistance to be added to obtain rated torque \n') printf('a) At starting = %g ohms\n',Rex1) printf('b) At 1000 rpm = %g ohms\n',Rex2)
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//clear// //Caption: Calculation of Lateral power distribution coefficient //Example5.1 //page192 clear; clc; close; phi = 0; //lateral coordinate Half_power = 10; //half power beam width teta = Half_power/2; teta_rad = teta/57.3; L = log(0.5)/log(cos(teta_rad)); disp(L,'Lateral power distribution coefficient L=') //Result //Lateral power distribution coefficient L = 181.83303
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// example:-11.9,page no.-635. // program to design a load matching network for a 50 ohm load impedence. Zo=50;f=6*10^9;taoin=1.25*expm(%i*(40)*%pi/180); Zin=((1+taoin)/(1-taoin))*Zo; Zl=-Zin; disp(Zl,'the load impedence = ')
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//Load SciPandas before execution pd = pandas(); df = pd.read_csv(".\train.csv") //Load the csv file disp(df.head()) //Display the head of the dataframe disp(df.shape) //Display the dimensions of the dataframe
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//Determine the minimum value that the characteristic impediance of an air-dielectric parallel-wire line Zmin = 276*log10(2*1); disp(Zmin, 'Min. value that char. impd. of an air-dielectric parallel-wire line is (in ohms)')
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// // h1=10 c=0.0673 d1=sqrt(h1/c) d2=d1-80 //since d1+d2=80 h2=c*d2*d2 printf("\n height of the hill is %0.3f meters',h2)
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//Example 2_4 page no:88 clc; A=[1.25,-0.75, -4.75,5.75]; B=[-12.5, 42.5]; X=inv(A)*B; Va=X(1); Vb=X(2); I10=(Va-Vb+10)/4; P=10*I10; disp(P,"the power supplied by 10V source is (in W)");
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//Example 1.18c clc; t0=2; T=10; for t=1:T x(t)=t; y(t)=x(t)*cos(200*%pi*t); end inputshift=x(T-t0); outputshift=y(T-t0); if(inputshift==outputshift) disp('THE GIVEN SYSTEM IS TIME INVARIANT') else disp('THE GIVEN SYSTEM IS TIME VARIANT'); end
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clc qw=0; rt=0; tx=15; wwe1=0; wwe2=0; wwe3=0; lol=0; lol1=0; lol2=0; lol3=0; lol4=0; lol5=0; dud=0; dud1=0; dud2=0; dud3=0; dud4=0; dud5=0; pop=0; pop1=0; pop2=0; pop3=0; pop4=0; pop5=0; pop6=0; pop7=0; pop8=0; re=0; re1=0; re2=0; re3=0; re4=0; re5=0; re6=0; re7=0; re8=0; po=0; po1=0; po2=0; po3=0; po4=0; po5=0; po6=0; po7=0; po8=0; po9=0; po10=0; po11=0; mn=0; mn1=0; mn2=0; mn3=0; mn4=0; mn5=0; mn6=0; mn7=0; mn8=0; mn9=0; mn10=0; mn11=0; ko=0; ko1=0; ko2=0; ko3=0; er=0; er1=0; er2=0; er3=0; er4=0; er5=0; er6=0; er7=0; er8=0; er9=0; er10=0; er11=0; a=messagebox(["WELCOME TO THE A^3 SANDWICH SHOP!!" "Would you like to Enter?"],"WELCOME","info",["YES","NO"],"modal"); if a==1 then name=x_mdialog(["ENTER YOUR DETAILS ";"ENTER NAME"],["FIRST NAME";"LAST NAME";],["";""]); fullname=strcat(name," ") disp(fullname) age=x_mdialog(["ENTER YOUR DETAILS ";"ENTER Age"],["Age";],["0";]); disp(age) gender=x_choose(["Male";"Female"],"Select Gender") end if gender==1 then gen="Male" else if gender==2 then gen="Female" end end l=list(' Select an Option ',1,[' PLACE AN ORDER ','VIEW STATISTICS']) rep = x_choices('Toggle Menu',list(l)) if rep==1 then d=messagebox(["SELECT FROM THE BREADS" "WHAT WOULD YOU LIKE TO ORDER FROM THE BREADS??"],"MENU","info",["YES","NO"],"modal"); if d==1 then ad=x_choose(["1.OREGANO BREAD=RS 30/-";"2.WHEAT BREAD=RS 20/-";"3.NORMAL BREAD=RS 15/-";"4.SESAME BREAD=RS 40/-"],"Select the choice in breads") select ad case 1 then ad1=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 3 then ad3=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 4 then ad4=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end end end if rep==1 then if ad==1 & ad1==1 then order="YOU ORDERED OREGANO BREAD"; quantity="QUANTITY-1"; cost="RS 30/-"; er11=30; j=messagebox(["You ordered " "OREGANO BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==1 & ad1==2 then order="YOU ORDERED OREGANO BREAD"; quantity="QUANTITY-2"; cost="RS 60/-"; er10=60; j=messagebox(["You ordered " "OREGANO BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==1 & ad1==3 then order="YOU ORDERED OREGANO BREAD"; quantity="QUANTITY-3"; cost="RS 90/-"; er9=90; j=messagebox(["You ordered" "OREGANO BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==1 then order="YOU ORDERED WHEAT BREAD"; quantity="QUANTITY-1"; cost="RS 20/-"; er8=20; j=messagebox(["You ordered " "WHEAT BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==2 then order="YOU ORDERED WHEAT BREAD"; quantity="QUANTITY-2"; cost="RS 40/-"; er7=70; j=messagebox(["You ordered " "WHEAT BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==3 then order="YOU ORDERED WHEAT BREAD"; quantity="QUANTITY-3"; cost="RS 60/-"; er6=60; j=messagebox(["You ordered " "WHEAT BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==1 then order="YOU ORDERED NORMAL BREAD"; quantity="QUANTITY-1"; cost="RS 15/-"; er5=15; j=messagebox(["You ordered " "NORMAL BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==2 then order="YOU ORDERED NORMAL BREAD"; quantity="QUANTITY-2"; cost="RS 30/-"; er4=30; j=messagebox(["You ordered" "NORMAL BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==3 then order="YOU ORDERED OREGANO BREAD"; quantity="QUANTITY-3"; cost="RS 45/-"; er3=45; j=messagebox(["You ordered " "NORMAL BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==4 & ad4==1 then order="YOU ORDERED SESAME BREAD"; quantity="QUANTITY-1"; cost="RS 40/-"; er2=40; j=messagebox(["You ordered" "SESAME BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==4 & ad4==2 then order="YOU ORDERED SESAME BREAD"; quantity="QUANTITY-2"; cost="RS 80/-"; er1=80; j=messagebox(["You ordered" "SESAME BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==4 & ad4==3 then order="YOU ORDERED SESAME BREAD"; quantity="QUANTITY-3"; cost="RS 120/-"; er=120; j=messagebox(["You ordered" "SESAME BREAD"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end end end end end end end if rep==1 then d=messagebox(["SELECT THE TOPPINGS" "WHAT WOULD YOU LIKE TO ADD??"],"MENU","info",["YES","NO"],"modal"); if d==1 then ad=x_choose(["1.TOMATO=RS 30/-";"2.CUCUMBER=RS 20/-";"3.CAPSICUM=RS 30/-";"4.ONION=RS 35/-"],"Select the choice in toppings") if ad==1 then order="YOU ORDERED TOMATO TOPPINGS"; cost="RS 30/-"; ko3=30 j=messagebox(["You ordered " "TOMATO TOPPINGS"], "Your selection", "info", ["OK",],"modal") disp(order),disp(cost); else if ad==2 then order="YOU ORDERED CUCUMBER TOPPING"; cost="RS 20/-"; ko2=20; j=messagebox(["You ordered " "CUCUMBER TOPPINGS"], "Your selection", "info", ["OK",],"modal") disp(order),disp(cost); else if ad==3 then order="YOU ORDERED CAPSICUM TOPPINGS"; cost="RS 30/-"; ko1=30; j=messagebox(["You ordered" "CAPSICUM TOPPINGS"], "Your selection", "info", ["OK",],"modal") disp(order),disp(cost); else if ad==4 then order="YOU ORDERED ONION TOPPINGS"; cost="RS 35/-"; ko=35; j=messagebox(["You ordered " "ONION TOPPINGS"], "Your selection", "info", ["OK",],"modal") disp(order),disp(cost); end end end end end end if rep==1 then d=messagebox(["SELECT THE FLAVOUR" "WHAT WOULD YOU LIKE TO HAVE??"],"MENU","info",["VEGETARIAN","NON-VEGETARIAN"],"modal"); if d==1 then adx=x_choose(["1.INDIA KA DELIGHT=RS 80/-";"2.ALOO PATTY=RS 60/-";"3.MEXICAN GRILL VEG=RS 90/-";"4.PANEER CHATAKA=RS 100/-"],"Select the choice in vegetarian") select adx case 1 then ad1x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 3 then ad3x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 4 then ad4x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end if rep==1 then if adx==1 & ad1x==1 then order="YOU ORDERED INDIA KA DELIGHT"; quantity="QUANTITY-1"; cost="RS 80/-"; mn11=80; j=messagebox(["You ordered " "INDIA KA DELIGHT"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==1 & ad1x==2 then order="YOU ORDERED INDIA KA DELIGHT"; quantity="QUANTITY-2"; cost="RS 160/-"; mn10=160; j=messagebox(["You ordered " "INDIA KA DELIGHT"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==1 & ad1x==3 then order="YOU ORDERED INDIA KA DELIGHT"; quantity="QUANTITY-3"; cost="RS 240/-"; mn9=240; j=messagebox(["You ordered" "INDIA KA DELIGHT"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==2 & ad2x==1 then order="YOU ORDERED ALOO PATTY"; quantity="QUANTITY-1"; cost="RS 60/-"; mn8=60; j=messagebox(["You ordered " "ALOO PATTY"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==2 & ad2x==2 then order="YOU ORDERED ALOO PATTY"; quantity="QUANTITY-2"; cost="RS 120/-"; mn7=120; j=messagebox(["You ordered " "ALOO PATTY"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==2 & ad2x==3 then order="YOU ORDERED ALOO PATTY"; quantity="QUANTITY-3"; cost="RS 180/-"; mn6=180; j=messagebox(["You ordered " "ALOO PATTY"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==3 & ad3x==1 then order="YOU ORDERED MEXICAN GRILL VEG"; quantity="QUANTITY-1"; cost="RS 90/-"; mn5=90; j=messagebox(["You ordered " "MEXICAN GRILL VEG"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==3 & ad3x==2 then order="YOU ORDERED MEXICAN GRILL VEG"; quantity="QUANTITY-2"; cost="RS 180/-"; mn4=180; j=messagebox(["You ordered " "MEXICAN GRILL VEG"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==3 & ad3x==3 then order="YOU ORDERED MEXICAN GRILL VEG"; quantity="QUANTITY-3"; cost="RS 270/-"; mn3=270; j=messagebox(["You ordered " "MEXICAN GRILL VEG"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==4 & ad4x==1 then order="YOU ORDERED PANEER CHATAKA"; quantity="QUANTITY-1"; cost="RS 100/-"; mn2=100; j=messagebox(["You ordered " "PANEER CHATAKA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==4 & ad4x==2 then order="YOU ORDERED PANEER CHATAKA"; quantity="QUANTITY-2"; cost="RS 200/-"; mn1=200; j=messagebox(["You ordered " "PANEER CHATAKA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==4 & ad4x==3 then order="YOU ORDERED PANEER CHATAKA"; quantity="QUANTITY-3"; cost="RS 300/-"; mn=300; j=messagebox(["You ordered " "PANEER CHATAKA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end end end end end end end else if d==2 then ad=x_choose(["1.EGG BARBEQUE=RS 70/-";"2.CHICKEN TIKKA=RS 100/-";"3.CHICKEN LABABDAAR=RS 110/-";"4.PORK SHORMA=RS 120/-"],"Select the choice in non-vegetarian") select ad case 1 then ad1=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 3 then ad3=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 4 then ad4=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end if rep==1 then if ad==1 & ad1==1 then order="YOU ORDERED EGG BARBEQUE"; quantity="QUANTITY-1"; cost="RS 70/-"; po11=70; j=messagebox(["You ordered " "EGG BARBEQUE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==1 & ad1==2 then order="YOU ORDERED EGG BARBEQUE"; quantity="QUANTITY-2"; cost="RS 140/-"; po10=140; j=messagebox(["You ordered " "EGG BARBEQUE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==1 & ad1==3 then order="YOU ORDERED EGG BARBEQUE"; quantity="QUANTITY-3"; cost="RS 210/-"; po9=210; j=messagebox(["You ordered" "EGG BARBEQUE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==1 then order="YOU ORDERED CHICKEN TIKKA"; quantity="QUANTITY-1"; cost="RS 100/-"; po8=100; j=messagebox(["You ordered " "CHICKEN TIKKA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==2 then order="YOU ORDERED CHICKEN TIKKA"; quantity="QUANTITY-2"; cost="RS 200/-"; po7=200; j=messagebox(["You ordered " "CHICKEN TIKKA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==3 then order="YOU ORDERED CHICKEN TIKKA"; quantity="QUANTITY-3"; cost="RS 300/-"; po6=300; j=messagebox(["You ordered " "CHICKEN TIKKA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==1 then order="YOU ORDERED CHICKEN LABABDAAR"; quantity="QUANTITY-1"; cost="RS 110/-"; po5=110; j=messagebox(["You ordered " "CHICKEN LABABDAAR"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==2 then order="YOU ORDERED CHICKEN LABABDAAR"; quantity="QUANTITY-2"; cost="RS 220/-"; po4=220; j=messagebox(["You ordered" "CHICKEN LABABDAAR"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==3 then order="YOU ORDERED CHICKEN LABABDAAR"; quantity="QUANTITY-3"; cost="RS 330/-"; po3=330; j=messagebox(["You ordered" "CHICKEN LABABDAAR"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==4 & ad4==1 then order="YOU ORDERED PORK SHORMA"; quantity="QUANTITY-1"; cost="RS 120/-"; po2=120; j=messagebox(["You ordered" "PORK SHORMA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==4 & ad4==2 then order="YOU ORDERED PORK SHORMA"; quantity="QUANTITY-2"; cost="RS 240/-"; po1=240; j=messagebox(["You ordered" "PORK SHORMA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==4 & ad4==3 then order="YOU ORDERED PORK SHORMA"; quantity="QUANTITY-3"; cost="RS 360/-"; po=360; j=messagebox(["You ordered" "PORK SHORMA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end end end end end end end end end if rep==1 then d=messagebox(["SELECT THE EXTRAAS" "WHAT WOULD YOU LIKE TO HAVE??"],"MENU","info",["PASRTY","COLD DRINKS","PASTAS","COOKIES"],"modal"); if d==1 then adx=x_choose(["1.BUTTERSCOTCH=RS 70/-";"2.CHOCOLATE TRUFFLE=RS 80/-";"3.BLACK FOREST=RS 60/-"],"Select the choice in PASTRIES") select adx case 1 then ad1x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 3 then ad3x=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end if rep==1 then if adx==1 & ad1x==1 then order="YOU ORDERED BUTTERSCOTCH"; quantity="QUANTITY-1"; cost="RS 70/-"; re8=70; j=messagebox(["You ordered " "BUTTERSCOTCH"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==1 & ad1x==2 then order="YOU ORDERED BUTTERSCOTCH"; quantity="QUANTITY-2"; cost="RS 140/-"; re7=140; j=messagebox(["You ordered " "BUTTERSCOTCH"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==1 & ad1x==3 then order="YOU ORDERED BUTTERSCOTCH"; quantity="QUANTITY-3"; cost="RS 210/-"; re6=210; j=messagebox(["You ordered" "BUTTERSCOTCH"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==2 & ad2x==1 then order="YOU ORDERED CHOCOLATE TRUFFLE"; quantity="QUANTITY-1"; cost="RS 80/-"; re5=80; j=messagebox(["You ordered " "CHOCOLATE TRUFFLE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==2 & ad2x==2 then order="YOU ORDERED CHOCOLATE TRUFFLE"; quantity="QUANTITY-2"; cost="RS 160/-"; re4=160; j=messagebox(["You ordered " "CHOCOLATE TRUFFLE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==2 & ad2x==3 then order="YOU ORDERED CHOCOLATE TRUFFLE"; quantity="QUANTITY-3"; cost="RS 240/-"; re3=240; j=messagebox(["You ordered " "CHOCOLATE TRUFFLE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==3 & ad3x==1 then order="YOU ORDERED BLACK FOREST"; quantity="QUANTITY-1"; cost="RS 60/-"; re2=60; j=messagebox(["You ordered " "BLACK FOREST"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==3 & ad3x==2 then order="YOU ORDERED BLACK FOREST"; quantity="QUANTITY-2"; cost="RS 120/-"; re1=120; j=messagebox(["You ordered " "BLACK FOREST"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adx==3 & ad3x==3 then order="YOU ORDERED BLACK FOREST"; quantity="QUANTITY-3"; cost="RS 180/-"; re=180; j=messagebox(["You ordered " "BLACK FOREST"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end end end end else if d==2 then ad=x_choose(["1.COKE=RS 40/-";"2.FANTA=RS 30/-";"3.SPRITE=RS 20/-"],"Select the choice in cold drinks") select ad case 1 then ad1=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 3 then ad3=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end if rep==1 then if ad==1 & ad1==1 then order="YOU ORDERED COKE"; quantity="QUANTITY-1"; cost="RS 40/-"; pop8=40; j=messagebox(["You ordered " "COKE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==1 & ad1==2 then order="YOU ORDERED COKE"; quantity="QUANTITY-2"; cost="RS 80/-"; pop7=80; j=messagebox(["You ordered " "COKE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==1 & ad1==3 then order="YOU ORDERED COKE"; quantity="QUANTITY-3"; cost="RS 120/-"; pop6=120; j=messagebox(["You ordered" "COKE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==1 then order="YOU ORDERED FANTA"; quantity="QUANTITY-1"; cost="RS 30/-"; pop5=30; j=messagebox(["You ordered " "FANTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==2 then order="YOU ORDERED FANTA"; quantity="QUANTITY-2"; cost="RS 60/-"; pop4=60; j=messagebox(["You ordered " "FANTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==2 & ad2==3 then order="YOU ORDERED FANTA"; quantity="QUANTITY-3"; cost="RS 90/-"; pop3=90; j=messagebox(["You ordered " "FANTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==1 then order="YOU ORDERED SPRITE"; quantity="QUANTITY-1"; cost="RS 20/-"; pop2=20; j=messagebox(["You ordered " "SPRITE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==2 then order="YOU ORDERED SPRITE"; quantity="QUANTITY-2"; cost="RS 40/-"; pop1=40; j=messagebox(["You ordered " "SPRITE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if ad==3 & ad3==3 then order="YOU ORDERED SPRITE"; quantity="QUANTITY-3"; cost="RS 60/-"; pop=60; j=messagebox(["You ordered" "SPRITE"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end end end end else if d==3 then adq=x_choose(["1.WHITE SAUCE PASTA=RS 50/-";"2.RED SAUCE PASTA=RS 60/-"],"Select the choice in pastas") select adq case 1 then ad1q=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2q=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end if adq==1 & ad1q==1 then order="YOU ORDERED WHITE SAUCE PASTA"; quantity="QUANTITY-1"; cost="RS 50/-"; dud5=50; j=messagebox(["You ordered " "WHITE SAUCE PASTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adq==1 & ad1q==2 then order="YOU ORDERED WHITE SAUCE PASTA"; quantity="QUANTITY-2"; cost="RS 100/-"; dud4=100; j=messagebox(["You ordered " "WHITE SAUCE PASTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adq==1 & ad1q==3 then order="YOU ORDERED WHITE SAUCE PASTA"; quantity="QUANTITY-3"; cost="RS 150/-"; dud3=150; j=messagebox(["You ordered" "WHITE SAUCE PASTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adq==2 & ad2q==1 then order="YOU ORDERED RED SAUCE PASTA"; quantity="QUANTITY-1"; cost="RS 60/-"; dud2=60; j=messagebox(["You ordered " "RED SAUCE PASTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adq==2 & ad2q==2 then order="YOU ORDERED RED SAUCE PASTA"; quantity="QUANTITY-2"; cost="RS 120/-"; dud1=120; j=messagebox(["You ordered " "RED SAUCE PASTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adq==2 & ad2q==3 then order="YOU ORDERED RED SAUCE PASTA"; quantity="QUANTITY-3"; cost="RS 180/-"; dud=180; j=messagebox(["You ordered " "RED SAUCE PASTA"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end if d==4 then adu=x_choose(["1.CHOCO CHIP COOKIES=RS 40/-";"2.BUTTER COOKIES=RS 50/-";"3.ALMOND NUT COOKIES=RS 30/-"],"Select the choice in cookies") select adu case 1 then ad1u=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 2 then ad2u=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") case 3 then ad3u=x_choose(["1";"2";"3"],"ENTER THE QUANTITY") end if adu==1 & ad1u==1 then order="YOU ORDERED CHOCO CHIP COOKIES"; quantity="QUANTITY-1"; cost="RS 40/-"; lol5=40; j=messagebox(["You ordered " "CHOCOCHIP COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==1 & ad1u==2 then order="YOU ORDERED CHOCOCHIP COOKIES"; quantity="QUANTITY-2"; cost="RS 80/-"; lol4=80; j=messagebox(["You ordered " "CHOCO CHIP COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==1 & ad1u==3 then order="YOU ORDERED CHOCOCHIP COOKIES"; quantity="QUANTITY-3"; cost="RS 120/-"; lol3=120; j=messagebox(["You ordered" "CHOCOCHIP COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==2 & ad2u==1 then order="YOU ORDERED BUTTER COOKIES"; quantity="QUANTITY-1"; cost="RS 50/-"; lol2=50; j=messagebox(["You ordered " "BUTTER COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==2 & ad2u==2 then order="YOU ORDERED BUTTER COOKIES"; quantity="QUANTITY-2"; cost="RS 100/-"; lol1=100; j=messagebox(["You ordered " "BUTTER COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==2 & ad2u==3 then order="YOU ORDERED BUTTER COOKIES"; quantity="QUANTITY-3"; cost="RS 150/-"; lol=150; j=messagebox(["You ordered " "BUTTER COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==3 & ad3u==1 then order="YOU ORDERED ALMOND NUT COOKIES"; quantity="QUANTITY-1"; cost="RS 30/-"; wwe3=30; j=messagebox(["You ordered " "ALMOND NUT COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==3 & ad3u==2 then order="YOU ORDERED ALMOND NUT COOKIES"; quantity="QUANTITY-2"; cost="RS 60/-"; wwe2=60; j=messagebox(["You ordered " "ALMOND NUT COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); else if adu==3 & ad3u==3 then order="YOU ORDERED ALMOND NUT COOKIES"; quantity="QUANTITY-3"; cost="RS 90/-"; wwe1=90; j=messagebox(["You ordered" "ALMOND NUT COOKIES"], "Your selection", "info", ["OK",],"modal") disp(order),disp(quantity),disp(cost); end end end end end end end end end end end end if rep==1 then j=messagebox(["WE HOPE YOU ARE SATISFIED WITH YOUR ORDER!!!" ""], "Your selection","info",["YES",],"modal") adq=messagebox(["WOULD YOU LIKE TO CONTRIBUTE TOWARDS THE SWACCH BHARAT ABHIYAAN????" "(RS 15/- EXTRA)"],"Your selection","info",["YES","NO"],"modal") select adq case 1 then p=messagebox(["YOU CHOSE TO CONTRIBUTE TOWARDS IT!!" ""], "Your selection", "info", ["OK",],"modal") cost="RS 15/-"; order="YOU CHOSE TO CONTRIBUTE TOWARDS A NOBLE CAUSE"; disp(order); disp(cost); rt=15; case 2 then a=messagebox(["PLEASE TRY CONTRIBUTING NEXT TIME!!" ""], "Your selection", "info", ["OK",],"modal") order="YOU DIDNT CONTRIBUTE!!"; disp(order); end end if rep==1 then adq=messagebox(["WOULD YOU LIKE TO PARCEL(RS 55/- EXTRA)????" ""],"Your selection","info",["YES","NO"],"modal") select adq case 1 then p=messagebox(["YOU CHOSE TO PARCEL YOUR ORDER!!" ""], "Your selection", "info", ["OK",],"modal") cost="RS 55/-"; qw=55; order="YOU CHOSE TO PARCEL YOUR ORDER"; disp(order); disp(cost); case 2 then a=messagebox(["YOU MAY DINE IN AT THE AVAILABLE SEATS" ""], "Your selection", "info", ["OK",],"modal") order="YOU DINED-IN!"; disp(order); end end tb=qw+rt+wwe1+wwe2+wwe3+lol+lol1+lol2+lol3+lol4+lol5+dud+dud1+dud2+dud3+dud4+dud5+pop+pop1+pop2+pop3+pop4+pop5+pop6+pop7+pop8+re+re1+re2+re3+re4+re5+re6+re7+re8+po+po1+po2+po3+po4+po5+po6+po7+po8+po9+po10+po11+mn+mn1+mn2+mn3+mn4+mn5+mn6+mn7+mn8+mn9+mn10+mn11+ko+ko1+ko2+ko3+er+er1+er2+er3+er4+er5+er6+er7+er8+er9+er10+er11+tx; iuy=messagebox(["TAX OF RS 15/- HAS BEEN ADDED TO THE BILL" ""],"Your selection","info",["OK",],"modal") adq=messagebox(["WOULD YOU LIKE TO VIEW YOUR BILL AMOUNT" ""],"Your selection","info",["YES",],"modal") p=messagebox(["YOUR BILL IS DISPLAYED IN THE COMMAND WINDOW" ""], "Your selection", "info", ["OK",],"modal") cost5=tb; order="YOUR FINAL BILL AMOUNT IS"; disp(order); disp(cost5); fop=mopen('arsenal.txt','w'); if(fop==-1) then disp("CANNOT OPEN FILE!!") end mfprintf(fop,"%d %d %d\n",1234,3456,9876); mclose(fop); fin=mopen('arsenal.txt','r'); if(fin==-1) then disp("CANNOT OPEN FILE!!") end [num_read,val(1),val(2),val(3)]=mfscanf(fin,"%d %d %d"); j=messagebox(["DO YOU HAVE A VOUCHER??" ""],"Your selection","info",["YES","NO"],"modal") disp("") select j case 1 then k=messagebox(["PLEASE ENTER THE VOUCHER CODE IN THE COMMAND WINDOW??" ""],"Your selection","info",["OK",],"modal") rto=input("PLEASE ENTER THE CODE=>") if(val(1)==rto) then k=messagebox(["CONGRATS YOU GET A DISCOUNT OF RS 70/-" ""],"Your selection","info",["OK",],"modal") tto=cost5-70; p=messagebox(["YOU CAN CHECK THE BILL AMOUNT IN THE COMMAND WINDOW" ""],"Your selection","info",["OK",],"modal") printf("THE NEW BILL AFTER DISCOUNT IS =RS %d",tto) disp("") u=messagebox(["PROCEED TO THE COMMAND WINDOW FOR FURTHER PAYMENT!!" ""],"Your selection","info",["OK",],"modal") gm=input("PLEASE ENTER THE PAYABLE AMOUNT=>") if gm<tto then t=messagebox(["PAY THE SUFFICIENT BALANCE!" ""],"Your selection","info",["OK",],"modal") else z=messagebox(["PAYMENT SUCCESSFUL!!" ""],"Your selection","info",["OK",],"modal") bl=gm-tto printf("YOUR DUE BALANCE =RS %d",bl); h=messagebox(["THANK YOU FOR YOUR VISIT" "HOPE TO SERVE YOU SOON AGAIN"],"Your selection","info",["OK",],"modal") end else if(val(2)==rto) then k=messagebox(["CONGRATS YOU GET A DISCOUNT OF RS 60/-" ""],"Your selection","info",["OK",],"modal") tty=cost5-60; p=messagebox(["YOU CAN CHECK THE BILL AMOUNT IN THE COMMAND WINDOW" ""],"Your selection","info",["OK",],"modal") printf("THE NEW BILL AFTER DISCOUNT IS = RS %d",tty) disp("") u=messagebox(["PROCEED TO THE COMMAND WINDOW FOR FURTHER PAYMENT!!" ""],"Your selection","info",["OK",],"modal") gm=input("PLEASE ENTER THE PAYABLE AMOUNT=>") if gm<tty then t=messagebox(["PAY THE SUFFICIENT BALANCE!" ""],"Your selection","info",["OK",],"modal") else z=messagebox(["PAYMENT SUCCESSFUL!!" ""],"Your selection","info",["OK",],"modal") bl=gm-tty printf("YOUR DUE BALANCE = RS %d",bl); h=messagebox(["THANK YOU FOR YOUR VISIT" "HOPE TO SERVE YOU SOON AGAIN"],"Your selection","info",["OK",],"modal") end else if(val(3)==rto) k=messagebox(["CONGRATS YOU GET A DISCOUNT OF RS 50/-" ""],"Your selection","info",["OK",],"modal") wer=cost5-50; p=messagebox(["YOU CAN CHECK THE BILL AMOUNT IN THE COMMAND WINDOW" ""],"Your selection","info",["OK",],"modal") printf("THE NEW BILL AFTER DISCOUNT IS= RS %d",wer) disp("") u=messagebox(["PROCEED TO THE COMMAND WINDOW FOR FURTHER PAYMENT!!" ""],"Your selection","info",["OK",],"modal") gm=input("PLEASE ENTER THE PAYABLE AMOUNT=>") if gm<wer then t=messagebox(["PAY THE SUFFICIENT BALANCE!" ""],"Your selection","info",["OK",],"modal") else z=messagebox(["PAYMENT SUCCESSFUL!!" ""],"Your selection","info",["OK",],"modal") bl=gm-wer printf("YOUR DUE BALANCE = %d",bl); disp("") h=messagebox(["THANK YOU FOR YOUR VISIT" "HOPE TO SERVE YOU SOON AGAIN"],"Your selection","info",["OK",],"modal") end else o=messagebox(["SORRY INVALID CODE!! THE BILL AMOUNT REMAINS THE SAME....."],"Your selection","info",["OK",],"modal") disp("") u=messagebox(["PROCEED TO THE COMMAND WINDOW FOR FURTHER PAYMENT!!" ""],"Your selection","info",["OK",],"modal") gm=input("PLEASE ENTER THE PAYABLE AMOUNT=>") if gm<cost5 then t=messagebox(["PAY THE SUFFICIENT BALANCE!" ""],"Your selection","info",["OK",],"modal") else z=messagebox(["PAYMENT SUCCESSFUL!!" ""],"Your selection","info",["OK",],"modal") end bl=gm-cost5 printf("YOUR DUE BALANCE = %d",bl); h=messagebox(["THANK YOU FOR YOUR VISIT" "HOPE TO SERVE YOU SOON AGAIN"],"Your selection","info",["OK",],"modal") end end end case 2 then u=messagebox(["PROCEED TO THE COMMAND WINDOW FOR FURTHER PAYMENT!!" ""],"Your selection","info",["OK",],"modal") gm=input("PLEASE ENTER THE PAYABLE AMOUNT=>") if gm<cost5 then t=messagebox(["PAY THE SUFFICIENT BALANCE!" ""],"Your selection","info",["OK",],"modal") else z=messagebox(["PAYMENT SUCCESSFUL!!" ""],"Your selection","info",["OK",],"modal") end bl=gm-cost5 printf("YOUR DUE BALANCE = %d",bl); h=messagebox(["THANK YOU FOR YOUR VISIT" "HOPE TO SERVE YOU SOON AGAIN"],"Your selection","info",["OK",],"modal") end file1=mopen('city.txt','a'); mfprintf(file1,"\ name %s\nAge %s\nGender %s\ntotal bill %d\n",fullname,age,gen,cost5); mclose(file1); end end if rep==2 then fty=mopen('duplicate.txt','w'); if(fty==-1) then disp("CANNOT OPEN FILE!!") end mfprintf(fty,"%d %d %d %d %d %d %d %d %d %d %d %d\n",123,345,987,890,876,234,835,456,900,435,590,632); mclose(fty); fkr=mopen('duplicate.txt','r'); if(fkr==-1) then disp("CANNOT OPEN FILE!!") end [num_ers,val(1),val(2),val(3),val(4),val(5),val(6),val(7),val(8),val(9),val(10),val(11),val(12)]=mfscanf(fkr,"%d %d %d %d %d %d %d %d %d %d %d %d"); mclose(fkr); avgdine=[val(1) val(2) val(3) val(4) val(5) val(6) val(7) val(8) val(9) val(10) val(11) val(12)]; months=[1 2 3 4 5 6 7 8 9 10 11 12]; title('THE AVERAGE PEOPLE DINING PER MONTH'); ylabel('AVERAGE PEOPLE DINING'); xlabel('MONTH NUMBER'); bar(months,avgdine) end
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// Exa 1.33 clc; clear; close; format('v',6) // Given data epsilon_Ge = 16/(36*%pi*10^11);// in F/cm d = 2*10^-4;// in cm A = 1;// in mm^2 A = A * 10^-2;// in cm^2 epsilon_o = epsilon_Ge;// in F/cm // The space charge capacitance C_T = (epsilon_o*A)/d;// in F C_T = C_T * 10^12;// in pF disp(C_T,"The space charge capacitance in pF is");
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//Ex19_23 Pg-966 clc dec=65535 //decimal input hex=dec2hex(dec) //hexadecimal output disp("The Hexadecimal equivalent of 65535 is") disp(hex) bin=dec2bin(dec) //binary output disp("The Binary equivalent of 65535 is ") disp(bin)
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function I=labelconnection(F,Neigbor,L) F=ceil((F+1-L)/L); [M1,M2]=size(F); I=zeros(M1,M2); label=0; List=1:M1*M2; V=Neigbor/2; for m1=1:M1 for m2=1:M2 labelV=zeros(1,V); n1=(m1-1)+1*((m1-1)==0); n2=m2; if F(m1,m2)==F(n1,n2) labelV(1)=I(n1,n2); end n1=m1; n2=(m2-1)+1*((m2-1)==0); if F(m1,m2)==F(n1,n2) labelV(2)=I(n1,n2); end if(V==4) n1=(m1-1)+1*((m1-1)==0); n2=(m2-1)+1*((m2-1)==0);; if F(m1,m2)==F(n1,n2) labelV(3)=I(n1,n2); end n1=(m1-1)+1*((m1-1)==0); n2=(m2+1)-1*(m2==M2); if F(m1,m2)==F(n1,n2) labelV(4)=I(n1,n2); end end if max(labelV)>0 labelV=labelV+max(labelV)*(labelV==0); labelA=min(labelV); I(m1,m2)=List(labelA); for i=1:V List(labelV(1,i))=labelA; end end if I(m1,m2)==0; label=label+1; I(m1,m2)=label; end end end for m1=1:M1 for m2=1:M2 I(m1,m2)=List(I(m1,m2)); end end endfunction
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//Problem 8.03: Determine the current required in a 400 mm length of conductor of an electric motor, when the conductor is situated at right-angles to a magnetic field of flux density 1.2 T, if a force of 1.92 N is to be exerted on the conductor. //initializing the variables: F = 1.92; // in newton B = 1.2; // in tesla l = 0.40; // in m u0 = 4*%pi*1E-7; //calculation: I = F/(B*l) printf("\n\nResult\n\n") printf("\n (a)Current I = %.0f Amperes(A)",I)
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// nth roots sqrt(3),3^(1/2) // square roots 2^(1/3) // cube root // exponent and logarithms exp(log(2)) log(exp(2)) log10(1000) // log base 10 // trigonometric functions cos(1)^2+sin(1)^2 4*atan(1) // =pi
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EX6_28.sce
//Exa 6.28 format('v',6) clc; clear; close; // Given data Beta= 100; V_BEsat= 0.8;// in V V_CEsat= 0.2;// in V V_BEact= 0.7;// in V V_CC = 10;// in V R_E = 1;// in kΩ R_C = 2;// in kΩ R_B= 100;// in kΩ Beta=100; alpha= Beta/(1+Beta); // Applying KVL to collector circuit // V_CC= I_Csat*R_C +V_CE +R_E*I_E // but I_E= alpha*I_Csat I_Csat= (V_CC-V_CEsat)/(R_C+R_E*alpha);// in mA I_Bmin= I_Csat/Beta;// in mA // Applying KVL to base loop // V_CC= I_B*R_B +V_BEsat +I_E*R_E // but I_E= I_Csat+I_B I_B= (V_CC-V_BEsat-I_Csat*R_E)/(R_B+R_E);// in mA I_B=I_B*10^3;// in µA disp(I_B,"The value of I_B in µA is : ") I_B=I_B*10^-3;// in mA I_Bmin= I_Bmin*10^3;// in µA disp(I_Bmin,"The minimum value of I_B in µA is : ") I_Bmin= I_Bmin*10^-3;// in mA if I_B>I_Bmin then disp("Since the value of I_B is greater than the value of I_Bmin, ") disp("Hence the transistor is in saturation .") end // The emitter current, I_E= (1+Beta)*I_Bmin;// in mA // The value of R_E R_E= (V_CC-V_BEact-I_Bmin*R_B)/I_E;// in kΩ disp(R_E,"The value of R_E in kΩ is : ") disp("So R_E should be greater than this value in order to bring the transistor just out of saturation ")
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clc; delm=(8.0626+8.0693)-15.9949; //in u E=delm*931; //calculating binding energy in MeV disp(E,"Binding Energy in MeV = "); //displaying result
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//Ex10_7 clc; // Given: y=2;// in ml labelled sample V=1000;// volume of mixture in ml BC=100/20;// 100 counts for 20 min // Formula: x=y*(Si-Sf)/Sf //Solution: Si=(2500-BC)/(2);// initial specific activity in counts min^-1 mg^-1 Sf=(600-BC)/(3);// final specific activity in counts min^-1 mg^-1 x=y*(Si-Sf)/Sf;// in mg for V amount of volume //% of iodine in mixture i=x*100/V; printf("The percentage of iodine in mixture is = %f ",i) //NOte: Backward counts are taken to be 100 counts for 10 min in the solution given in textbook
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// Grob's Basic Electronics 11e // Chapter No. 19 // Example No. 19_14 clc; clear; // A transformer with a 20:1 voltage step-down ratio has 6 V across 0.6  in the secondary. (a) How much is Is? (b) How much is Ip? // Given data vs = 6; // Secondary voltage=6 Volts Rl = 0.6; // Secondary load=0.6 Ohms tr = 20/1; // Turns ratio=20:1 Is = vs/Rl; disp (Is,'The Secondary Current in Amps') Ip = Is/tr; disp (Ip,'The Primary Current in Amps')
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//Function To Caluculate factorial of a given number function[value]=fact(a) value=-1; if(a<0|a>170) disp("Invalid valu."); break; else if(a==1|a==0) value=1; else value=a*fact(a-1); end end endfunction //Calling Routine: a=5; val=fact(a); printf("%d factorial is %d",a,val);
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// exec('C:\Users\raghunath\Desktop\circle_packing2.sce',-1) clear clearglobal tic ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////FUNCTION DEFINITIONS START FROM HERE////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// function [cn,on] = inpoly(p,node,myedge,TOL) // (c) 2006 Darren Engwirda// // // Geometry //dtheta = %pi/15; //theta = (-%pi:dtheta:(%pi-dtheta))'; //node = [cos(theta) sin(theta)]; //n = size(node,1); //cnect = [(1:n-1)' (2:n)'; n 1]; //p = 3*(rand(10000,2)-0.5); //p1=node; //p2=[ //-0.5 -0.5 //0.5 -0.5 //0.5 0.5 //-0.5 0.5 //]; //n1=size(p1,1); //n2=size(p2,1); //c1 = [(1:n1-1)', (2:n1)'; n1, 1]; //c2 = [(1:n2-1)', (2:n2)'; n2, 1]; //node=[p1;p2]; //cnect=[ //c1 //c2+n1]; //tic, in = inpoly(p,node,cnect); t1 = toc; //scf;plot(p(find(in==1),1),p(find(in==1),2),'b.');plot(p(find(in==0),1),p(find(in==0),2),'r.'); nargin=argn(2); if nargin<4 TOL = 1.0e-12; if nargin<3 myedge = []; if nargin<2 error('Insufficient inputs'); end end end nnode = size(node,1); if isempty(myedge) // Build edge if not passed myedge = [(1:nnode-1)' (2:nnode)'; nnode 1]; end if size(p,2)~=2 error('P must be an Nx2 array.'); end if size(node,2)~=2 error('NODE must be an Mx2 array.'); end if size(myedge,2)~=2 error('EDGE must be an Mx2 array.'); end if max(myedge(:))>nnode | or(myedge(:)<1) error('Invalid EDGE.'); end //// PRE-PROCESSING ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// n = size(p,1); nc = size(myedge,1); // Choose the direction with the biggest range as the "y-coordinate" for the // test. This should ensure that the sorting is done along the best // direction for long and skinny problems wrt either the x or y axes. dxy = max(p,'r')-min(p,'r'); if dxy(1)>dxy(2) // Flip co-ords if x range is bigger p = p(:,[2,1]); node = node(:,[2,1]); end tol = TOL*min(dxy); // Sort test points by y-value [y,i] = gsort(p(:,2),'g','i'); x = p(i,1); //// MAIN LOOP ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// cn = zeros(n,1); // Because we're dealing with mod(cn,2) we don't have // to actually increment the crossing number, we can // just flip a logical at each intersection (faster!) on = cn; for k = 1:nc // Loop through edges // Nodes in current edge n1 = myedge(k,1); n2 = myedge(k,2); // Endpoints - sorted so that [x1,y1] & [x2,y2] has y1<=y2 // - also get xmin = min(x1,x2), xmax = max(x1,x2) y1 = node(n1,2); y2 = node(n2,2); if y1<y2 x1 = node(n1,1); x2 = node(n2,1); else yt = y1; y1 = y2; y2 = yt; x1 = node(n2,1); x2 = node(n1,1); end if x1>x2 xmin = x2; xmax = x1; else xmin = x1; xmax = x2; end // Binary search to find first point with y<=y1 for current edge if y(1)>=y1 start = 1; elseif y(n)<y1 start = n+1; else lower = 1; upper = n; for j = 1:n start = round(0.5*(lower+upper)); if y(start)<y1 lower = start; elseif y(start-1)<y1 break; else upper = start; end end end // Loop through points for j = start:n // Check the bounding-box for the edge before doing the intersection // test. Take shortcuts wherever possible! Y = y(j); // Do the array look-up once & make a temp scalar if Y<=y2 X = x(j); // Do the array look-up once & make a temp scalar if X>=xmin if X<=xmax //pause; // Check if we're "on" the edge on(j) = on(j) | (abs((y2-Y)*(x1-X)-(y1-Y)*(x2-X))<tol); // Do the actual intersection test if (Y<y2) & ((y2-y1)*(X-x1)<(Y-y1)*(x2-x1)) cn(j) = ~cn(j); end end elseif Y<y2 // Deal with points exactly at vertices // Has to cross edge cn(j) = ~cn(j); end else // Due to the sorting, no points with >y // value need to be checked break end end end // Re-index to undo the sorting cn(i) = cn|on; on(i) = on; endfunction // inpoly() function circlenodes=movecircle(circlenodes,CircleID,dx,dy,NodesPerCircle) // pause noderange=1:NodesPerCircle; noderange=(CircleID-1)*NodesPerCircle + noderange; circlenodes(noderange,1)=circlenodes(noderange,1)+dx; circlenodes(noderange,2)=circlenodes(noderange,2)+dy; endfunction function out=mysign(val) if val>=0 out=1; else out=-1; end endfunction function drawpolygons(polynodes,polyconnections) newsequence=[]; for i=1:size(polyconnections,1) newsequence=[newsequence;polyconnections(i,1);polyconnections(i,2);0]; end newpoints=[]; //pause for i=1:length(newsequence) if newsequence(i)==0 newpoints=[newpoints; %nan %nan]; else newpoints=[newpoints;polynodes(newsequence(i),:)]; end end plot(newpoints(:,1),newpoints(:,2),'r-'); endfunction function dist=boundarydistance(point,boundary) boundary=[boundary;boundary(1,:)]; dist=orthProj(boundary,point); endfunction ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// draw=1; processfurther=1; if processfurther==1 tic; polynodes=[ 84.991668 3.75 //112.157 3.75 113.656 5.32 113.378 9.56 111.687 10.922 84.754 7.3757 ]; np = size(polynodes,1); polyconnections = [(1:np-1)' (2:np)'; np 1]; onlypolynodes=polynodes; circlecount=200; radius=0.8128/2; r=radius*(1+1e-4); NodesPerCircle=16; theta=(1:NodesPerCircle)'*2*%pi/NodesPerCircle; circlenodeinit=np; circlenodes=[]; circleconnections=[]; //bottom left point x=polynodes(:,1); y=polynodes(:,2); x=x-mean(x);y=y-mean(y); indices_q1=intersect(find(x>0), find(y>0)); indices_q3=intersect(find(x<0), find(y<0)); indices_q=indices_q3; dist_cg=sqrt(x.^2+y.^2); farthest_index=indices_q(min(find(dist_cg(indices_q)==max(dist_cg(indices_q))))); farthest_pt=polynodes(farthest_index,:); lineindex1=find(polyconnections(:,1)==farthest_index); lineindex2=find(polyconnections(:,2)==farthest_index); linetheta1=((atand((polynodes(polyconnections(lineindex1,2),2)-polynodes(polyconnections(lineindex1,1),2)),(polynodes(polyconnections(lineindex1,2),1)-polynodes(polyconnections(lineindex1,1),1))))); linetheta2=((atand((polynodes(polyconnections(lineindex2,1),2)-polynodes(polyconnections(lineindex2,2),2)),(polynodes(polyconnections(lineindex2,1),1)-polynodes(polyconnections(lineindex2,2),1))))); d=abs(r/sind((linetheta2-linetheta1)/2)); pos=farthest_pt + [mysign(farthest_pt(1))*d*cosd((linetheta2+linetheta1)/2) mysign(farthest_pt(2))*d*sind((linetheta2+linetheta1)/2) ]; // seedpos(1)=pos(1)-2*r*cosd(linetheta1); // seedpos(2)=pos(2)-2*r*sind(linetheta1); circleCoordinates=[]; oldpos=[]; forward=1; if draw==1 clf; drawlater(); drawpolygons(polynodes,polyconnections); drawnow(); end dseedtheta=1; radiusfactor=1; narrowpassage=0; //disp('##starting here. ') for i=1:circlecount inside=0; seedtheta=0; radiusfactor=1; if i==137 // pause end // pause //disp('planning to place the wire number : ' + string(i)) while(inside==0) thiscirclenode=[pos(1)+radius*cos(theta) pos(2)+radius*sin(theta)]; nc= size(thiscirclenode,1); thiscircleconnections=circlenodeinit + [(1:nc-1)' (2:nc)'; nc 1]; [in,on]=inpoly(thiscirclenode,polynodes,polyconnections) if length(find(in==0))==0 & length(find(on==1))==0//perfectly inside. inside=1; //pos=pos+r*0.01*rand(1,2); circleCoordinates=[circleCoordinates;pos] oldpos=pos; //disp('found the fitting place for the wire ' + string(i)) if seedtheta<>0 //disp('seedtheta is non zero. flipping the direction') seedtheta=0; if boundarydistance(pos,onlypolynodes) < 1.5*r if narrowpassage==0 forward=-forward; else narrowpassage=0; end end end pos=pos + [ forward*2*r*cosd(linetheta1+seedtheta) forward*2*r*sind(linetheta1+seedtheta)] //+r*0.001*grand(1,2,'unf',-1,1) // elseif length(find(in==0))==0 & length(find(on==0))==0//overlapping. may not happen for now. // searching=1; // forward=-forward; //disp('found overlapping position.') //pos=pos + [ 2*r*cosd(linetheta1) 2*r*sind(linetheta1)] else if length(find(in==0))==0 & length(find(on==0))==0//overlapping disp('narrowpassage activated') narrowpassage=1; forward=-forward; radiusfactor=radiusfactor+1; seedtheta=0+1*forward*dseedtheta/radiusfactor end if length(find(in==1))==0//perfectly outside // if radiusfactor>1 // seedtheta=seedtheta-forward*dseedtheta; // end if narrowpassage==1 radiusfactor=radiusfactor+1; seedtheta=0+1*forward*dseedtheta/radiusfactor; else seedtheta=seedtheta+1*forward*dseedtheta/radiusfactor; //disp('FF') end // pause else seedtheta=seedtheta+forward*dseedtheta/radiusfactor; end if abs(seedtheta) > 180 // pause; radiusfactor=radiusfactor+1; seedtheta=seedtheta-forward*180/radiusfactor; disp('increasing radius factor') // if boundarydistance(pos,onlypolynodes) < 1.5*r // forward=-forward; // end end pos=oldpos + [ forward*radiusfactor*2*r*cosd(linetheta1+seedtheta) forward*radiusfactor*2*r*sind(linetheta1+seedtheta)] //+r*0.05*rand(1,2); end if draw==1 drawlater(); clf; drawpolygons([polynodes;thiscirclenode],[polyconnections;thiscircleconnections]); drawnow(); end end polynodes=[polynodes;thiscirclenode]; polyconnections=[polyconnections;thiscircleconnections]; circlenodeinit=circlenodeinit+size(thiscirclenode,1); if draw==1 drawlater(); clf; drawpolygons(polynodes,polyconnections); drawnow(); end // circlenodes=[circlenodes;thiscirclenode]; // circleconnections=[circleconnections;thiscircleconnections]; end //filledcircles=0; ////for i=1:circlecount //// circlenodes=movecircle(circlenodes,i,20*rand(1,1),10*rand(1,1),16); ////end ////totalnodes=[polynodes;circlenodes]; ////totalconnections=[polyconnections;circleconnections]; ////p = 120*(rand(100000,2)+0); ////in = inpoly(p,totalnodes,totalconnections); ////scf; ////plot(p(find(in==1),1),p(find(in==1),2),'b.'); ////plot(p(find(in==0),1),p(find(in==0),2),'r.'); //////plot(totalnodes(:,1),totalnodes(:,2),'g') // //while(filledcircles<circlecount) // thiscircle=circlenodes(1:16); // thiscircleconnections=circleconnections(1,16); //end end execstr('tm=toc();disp(''Simulation of the circle packing took ''+string(round(tm))+'' seconds.'');')
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clc //Initialization of variables Qh=-1000 //Btu Ql=1000 //Btu Th=1460 //R Tl=960 //R //calculations Sh=Qh/Th Sl=Ql/Tl S=Sh+Sl //results printf("Change in entropy of the universe = %.3f B/R",S)
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// Display mode mode(0); // Display warning for floating point exception ieee(1); clc; disp("Principles of Heat Transfer, 7th Ed. Frank Kreith et. al Chapter - 1 Example # 1.14 ") disp("The given example is theoretical and does not involve any numerical computation")
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// the "cd" command below is expanded by the gcc preprocessor cd TESTDIR // load the program to be tested //load test.cos; load THEFILENAME; // reference function seems to load all functions in the .sci file, see Restrictions of http://www.scilab.org/product/man/genlib.html x = FlexCodeGen_; // load all the other libraries load SCI/macros/scicos/lib; exec(loadpallibs,-1); // search for the block tagged with the right ID. If found, call the code generator ID='cg' for i=1:size(scs_m.objs) obj=scs_m.objs(i); if typeof(obj)=='Block' & obj.graphics.id==ID then blocks_list = []; symbols_list = []; functions_list = []; txt = []; [blocks_list,functions_list,symbols_list] = EE_analyze_superblocks(obj,blocks_list,functions_list,symbols_list); for i=1:size(blocks_list,1) txt = [txt; TESTCASE+" "+blocks_list(i)]; end mputl(txt, 'blocklist.txt'); end end quit
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clc; syms s ; X=5/((s+2)*(s-3)); x=ilaplace(X);
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exec('diffuse/diffuse_utils.sce'); exec('diffuse/mymultireactdiffuse.sce'); exec('diffuse/newtempmultireactconc.sce'); exec('diffuse/mconcupdate.sce'); exec('diffuse/getconcsub.sce'); exec('diffuse/lap3d.sce'); exec('diffuse/cmdott.sce'); exec('diffuse/compfunc.sce'); //mkdir('resultsmr1'); //mkdir('tmp'); //exec('diffuse_analysis.sce'); rootdirectory='/scratch/cs1mkg/results/diffuse_rel'; jobname=sprintf('mrdifrun1'); mkdir(rootdirectory+'/'+jobname); //directory=sprintf('resultsmr1'); //chdir(directory); dt=0.0001; h=0.05; dif(1)=0.5; dif(2)=1; dif(3)=1; inconsts=[ic1,ic2,ic3]; nspec=3; nsteps=5; nsubsteps=1; n1=20; n2=20; n3=1; in(1)=n1; //n1 in(2)=n2; //n2 in(3)=n3; //n3 in(4)=h; //h in(5)=nspec; //For each species //create //1. Initial concentration //2. Sources //3. Sinkss //4. species //concsin=rand(n1,n2,n3); inconsts=ones(nspec,nspec); concsin=rand(n1,n2,n3,nspec); //concsin( :, :, :,1)=ones(n1,n2,n3); //concsin( :, :, :,2)=ones(n1,n2,n3)/2; //a=concsin( :, :, :,1) //b=concsin( :, :, :,2) sources=zeros(n1,n2,n3,nspec); sinks=zeros(n1,n2,n3,nspec); //concsin(5,5,1,1)=3; //concsin(15,15,1,2)=1.5; //sources(n1/2,n2/2,1,1)=0.5; //sources(5,5,1,2)=0.5; //sinks(n1,n2,n3,2)=0.1; //read initial configuration from an old one sirout=mymultireactdiffuse(rootdirectory,jobname,nsteps, nsubsteps, dt, dif, in, concsin, sources, sinks,inconsts); //sirout=mydiffuse(jobname,nsteps,1,0.0001, in,concsin,sources,sinks); mgendxgen(rootdirectory,jobname,nsteps,n1,n2,n3,nspec); //t=(1:1:2000); //X=[sirout(4, :);sirout(4, :);sirout(4, :)]; //Y=[sirout(1, :);sirout(2, :);sirout(3, :)]; //plot2d(X',Y',style=[-1 -2 -3]',leg="x@y@y") //plotmodel=sirout //exit;
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//========================================================================== // *** CHECK CONNECTIVITY MATRIX A2S *** //========================================================================== clear; clc; xdel(winsid()) // REAMARK: works only if structural mesh is a plane // Z-Axis // Load Structural mesh fid = mopen("StructuralMesh.vertices"); Nv = mfscanf(fid, "%i\n"); for k = 1:Nv vertices(k,:) = mfscanf(fid,"%lf %lf %lf\n" ); end mclose(fid); fid = mopen("StructuralMesh.elements"); Ne = mfscanf(fid, "%i\n"); for k = 1:Ne elements(k,:) = mfscanf(fid,"%i %i %i\n" ); end mclose(fid); vertices = vertices'; elements = elements'; // Plot Structural Mesh scf(1); for i = 1:length(elements(1, :)) id_ele = [ elements(:, i) ]; id_ele = [ id_ele; id_ele(1) ]; plot(vertices(1, id_ele), vertices(2, id_ele), 'k-' ); end // Color array (200x) colorv = [ 'r', 'g', 'b', 'c' ]; colorv = [ colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv, ... colorv, colorv, colorv, colorv, colorv ]; // Load Aerodynamic CGs and connectivity fid = mopen("CG_a.txt"); k = 1; while ( ~meof(fid) ) CGa(k,:) = mfscanf(fid,"%lf %lf %lf\n" ); k = k + 1; end mclose(fid); fid = mopen("id_a2s.txt"); k = 1; while ( ~meof(fid) ) a2s(k,:) = mfscanf(fid,"%i %i\n" ); k = k + 1; end mclose(fid); a2s = a2s(:,2)' + 1; CGa = CGa'; // Plot CGs for i = 1:Ne CCGai = []; for j = 1: length(a2s) if ( a2s(j) == i ) CCGai = [ CCGai, CGa(:,j)]; end end Interface(i).entries = CCGai; end for i = 1: Ne plot(Interface(i).entries(1,:), Interface(i).entries(2,:), colorv(i) + '.', 'markersize', 2) end // Save figure xs2eps(1, "../Fig/CheckA2S.eps", 1)
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mode(2);errcatch(-1,"stop");driver("GIF");// Bode plot of the differencing filter, discussed in Example 5.6 on page 130 // 5.4 exec('label.sci',-1); w = 0.01:0.01:%pi; G = 1-exp(-%i*w); subplot(2,1,1) plot2d1("gll",w,abs(G),style = 2); label('',4,' ','Magnitude',4); subplot(2,1,2) plot2d1("gln",w,phasemag(G),style = 2); label('',4,'w','Phase',4) xinit('/home/fossee/Downloads/tbc_graphs/Digital_Control_K._M._Moudgalya_2048/derv_bode');xend();exit();
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Ex7_12.sce
//========================================================================= //chapter 7 example 12 clc; clear; //input data IDS = 2*10^-3; //current in mA IDSS = 8*10^-3; // current in mA Vp = -4.5; //pinch off voltage in V VGS1 = -1.902; //pinch off voltage when IDS =3*10^-3 A //formula //IDS = IDSS*((1-(VGS/Vp))^2) //calculation VGS = Vp*(1-(sqrt(IDS/IDSS))); gm = ((-2*IDSS)/Vp)*(1-(VGS1/Vp)); //result mprintf('transconductance =%3.2f.mS\n',gm/10^-3); //==========================================================================
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// Exa 21.1 // To find number of users that can be supported by the WLAN and the bandwidth efficiency. clc; clear all; Fl=902; //lower limit frequency MHz Fh=928; //higher limit frequency in MHz Rt=0.5; //symbol transmission rate in Mega symbols per sec S=16; //No of symbols BER=10^-5;//Bir error rate SG=2.6;//sector gain B=0.5; //Interference factor a=0.9; //power control efficiency //solution BW=Fh-Fl; Rb=Rt*log2(S); Gp=BW/Rb; // BER = 10^-5= 0.5*erfc(sqrt(Eb_No)) deff('y=f(x)','y=0.5*erfc(sqrt(x))-10^-5') [x,v,info]=fsolve(0.1,f);//x=Eb_No M=Gp/x * 1/(1+B) * SG * a; printf('Number of users that can be supported by the WLAN are %d \n',M); eff=Rb*int(M)/BW; printf(' The bandwidth efficiency is %.2f bps/Hz \n',eff);
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//Ex13_30 PG-13.16 clc clear printf("\n Conversion of decimal number 22.64 to its hexadecimal equivalent \n ") a=22.64; z=modulo(a,1) x=floor(a);//separating the decimal from the integer part b=dec2hex(x) //converting the decimal part of the number into hexadecimal z=z*16; q=floor(z); if (q==10) a1=['A'] else if (q==11) a1=['B'] else if (q==12) a1=['C'] else if (q==13) a1=['D'] else if (q==14) a1=['E'] else if (q==15) a1=['F'] else a1=q end end end end end end if z>=1 then z=z-q; end z=z*16; q=floor(z); if (q==10) a2=['A'] else if (q==11) a2=['B'] else if (q==12) a2=['C'] else if (q==13) a2=['D'] else if (q==14) a2=['E'] else if (q==15) a2=['F'] else a2=q end end end end end end if z>=1 then z=z-q; end z=z*16; q=floor(z); if (q==10) a3=['A'] else if (q==11) a3=['B'] else if (q==12) a3=['C'] else if (q==13) a3=['D'] else if (q==14) a3=['E'] else if (q==15) a3=['F'] else a3=q end end end end end end if z>=1 then z=z-q; end z=z*16; q=floor(z); if (q==10) a4=['A'] else if (q==11) a4=['B'] else if (q==12) a4=['C'] else if (q==13) a4=['D'] else if (q==14) a4=['E'] else if (q==15) a4=['F'] else a4=q end end end end end end if z>=1 then z=z-q; end printf("The hexadecimal equivalent of the given decimal number 22.64 is:") printf(" %s.%s%.0f%s%.0f",b,a1,a2,a3,a4);
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clc //to calculate resolving power of grating N=15000 //total number of lines on grating lambda=6*10^-5 //wavelength in cm n=2 //order of spectrum RP=n*N disp("resolving power is RP ="+string(RP)+"unitless") //to calculate smallest wavelength difference that can be resolved with a light of wavelength 6000angstrom in the second order dlambda=lambda/(n*N) disp("smallest wavelength difference dlambda="+string(dlambda)+"cm")
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//calculating percentage C and H //Example 2.6 clc clear wt1=2.75//increase in wt of KOH tube in gm wt2=0.45//increase in wt of CaCl2 tube in gm wt=1//weight of coal sample in gm %c=(wt1*12*100)/(wt*44)//percentage of carbon %h=(wt2*2*100)/(wt*18)//percentage of hydrogen printf('Thus (i)Percentage of carbon = %2.0f percent',%c) printf('\n(ii)Percentage of hydrogen =%2.0f percent',%h)
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//example 12.1 clc; funcprot(0); // Initialization of Variable rho=1.22; pi=3.1428; rhos=518; rhoav=321; mu=1.73/10^5; g=9.81; d=0.65/1000; d2=25.5/100;//dia of duct ms=22.7/60;//mass flow rate //calculation e=(rhos-rhoav)/(rhos-rho); //coeff of quadratic eqn in U //a*x^2+b*x+c=0 c=-(1-e)*(rhos-rho)*g; b=150*(1-e)^2*mu/d^2/e^3; a=1.75*(1-e)*rho/d/e^3; y=poly([c b a],'U','coeff'); U=roots(y); Us=ms*4/pi/d2^2/rhos;//superficial speed Ua=e/e*(U(2)/e+Us/(1-e)); disp(Ua,"the actual linear flow rate through duct in (m/s):")
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//Problem 21.16: Determine the torque developed by a 350 V d.c. motor having an armature resistance of 0.5 ohm and running at 15 rev/s. The armature current is 60 A. //initializing the variables: V = 350; // in Volts Ra = 0.5; // in ohms n = 15; // in rev/sec Ia = 60; // in Amperes //calculation: //Back e.m.f. E = V - Ia*Ra E = V - Ia*Ra //torque T = E*Ia/(2* n*pi) T = E*Ia/(2*n*%pi) printf("\n\n Result \n\n") printf("\n the torque exerted is %.1f Nm ",T)
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clc // Given that V = 12.4e3 // voltage in V i = 2e-3 // current in amp e = 1.6e-19 // charge on an electron in C // Sample Problem 7 on page no. 20.9 printf("\n # PROBLEM 7 # \n") printf("Standard formula used \n ") printf("I = ne \n 1/2*m*v^2 = eV \n") n = i / e v = 0.593e6*sqrt(V) printf("\n Number of electrons striking the target per sec is %e.\n Speed of electrons is %e m/sec.",n,v)
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function [Mc] = guardar(Mc,c,rf,rfs,rp,ro,rd,rl,ld,n) Mc(n,1)=c; Mc(n,2)=rp; Mc(n,3)=rf; Mc(n,4)=rfs; Mc(n,5)=ld; Mc(n,6)=rl; Mc(n,7)=rd; Mc(n,8)=ro; endfunction
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M=8; //number of male professors teaching calculus F=5; //number of female professors teaching calculus T=M+F ; disp(T,'number of ways a student can choose a calculus professor') E=[2,3,5,7]; //event of choosing a prime number less than 10 F=[2,4,6,8]; //event of choosing an even number less than 10 G=intersect(E,F); //event of getting an even and prime number H=length(E)+length(F)-length(G); disp(H,'event of getting an even or a prime number') E=[11,13,17,19]; //event of choosing a prime number between 10 and 20 F=[12,14,16,18]; //event of choosing an even number between 10 and 20 G=union(E,F); //event of choosing a number which is prime or even k=length(G); disp(k,'number of ways of choosing a number which is prime or even')
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//Eg-13.15 //pg-559 clear clc deff('out = func(in1,in2)','out = 0.5*(1+in1)*in2^2') x(1) = 0; y(1) = 1; h = 0.001; n = 0.3/0.001; for(i = 1:n) x(i+1) = x(i) + h; end a = (2^0.5-1)/2; b = (2-2^0.5)/2; c = -(2^0.5)/2; d = 1 + (2^0.5)/2; for(i = 1:n) k1(i) = h*func(x(i),y(i)); k2(i) = h*func(x(i)+h/2,y(i)+k1(i)/2); k3(i) = h*func(x(i)+h/2,y(i)+a*k1(i)+b*k2(i)); k4(i) = h*func(x(i)+h,y(i)+c*k2(i)+d*k3(i)); y(i+1) = y(i) + 1/6*(k1(i)+2*b*k2(i)+2*d*k3(i)+k4(i)); end printf(' t y F(t,y)\n') for(i = 0:3) printf('%f %f %f\n',x(i*100+1),y(i*100+1),func(x(i*100+1),y(i*100+1))) end //Using equations [61] and [62] y0 = y(1); y1 = y(101); y2 = y(201); y3 = y(301); x0 = x(1); x1 = x(101); x2 = x(201); x3 = x(301); x4 = 0.4; h = 0.1; y4b = y0 + 4*h/3*(2*func(x3,y3) - func(x2,y2) + 2*func(x1,y1)); y4 = y2 + h/3*(func(x2,y2) + 4*func(x3,y3) + func(x4,y4b)); printf('\nThe value of y4 = %f\n',y4)
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clc Q1=1500/60; //kJ/s W=8.2; //kW disp("(i) Thermal efficiency") n=W/Q1; disp("n=") disp(n) disp("(ii) Rate of heat rejection") Q2=Q1-W; disp("Q2=") disp(Q2) disp("kW")
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//Chapter 7: Solid State //Problem: 2 clc; //Declaration of Variable a = 450 //in pm // Solution d = a / sqrt(2 ** 2 + 2 ** 2 + 0) mprintf("Interplanar spacing : %d",d)
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// Exa 4.25 format('v',7) clc; clear; close; // Given data I_C =5 * 10^-3;// in A V_CE = 8;// in V V_E = 6;// in V S = 10; h_fc = 200; Beta = h_fc; V_CC = 20;// in V V_BE = 0.6;// in V I_B =I_C/Beta;// in A I_E = I_C+I_B;// in A // I_C*R_C = V_CC - V_CE - V_E; R_C = (V_CC - V_CE - V_E)/I_C;// in ohm R_C = R_C * 10^-3;// in k ohm disp(R_C,"The value of R_C in k ohm is"); R_C = R_C * 10^3;// in ohm //Voltage at point E, V_E =I_E*R_E; R_E = V_E/I_E;// in ohm R_E = R_E * 10^-3;// in k ohm disp(R_E,"The value of R_E in k ohm is"); R_E = R_E * 10^3;// in ohm // S = ((Beta+1)*(R_B+R_E))/( R_B+(R_E*(1+Beta)) ), where R_B= R1*R2/(R1+R2) R_B = ((R_E*(1+Beta))-(S*R_E*(1+Beta)))/( S-(1+Beta) );// in ohm // Vth = V_CC*(R2/(R1+R2)) = V_CC*(R_B/R1) // Applying KVL we get, Vth= I_B*R_B+V_BE+V_E or Vth = (I_B*R_B) + V_BE + V_E;// in V R1 =(V_CC/Vth)*R_B;// in ohm R1= R1*10^-3;// in k ohm disp(R1,"The value of R1 in k ohm is"); R2 = (R1*Vth)/(V_CC-Vth);// in k ohm disp(R2,"The value of R2 in k ohm is");
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Vgroup #0 contains: tag = 720, ref = 2 <-- neither vdata nor vgroup Vgroup #1 contains: tag = 1962, ref = 4 <-- is a vdata Vgroup #2 contains: tag = 1965, ref = 5 <-- is a vgroup tag = 1962, ref = 6 <-- is a vdata tag = 106, ref = 7 <-- neither vdata nor vgroup tag = 701, ref = 7 <-- neither vdata nor vgroup tag = 720, ref = 2 <-- neither vdata nor vgroup Vgroup #3 contains: tag = 1965, ref = 5 <-- is a vgroup tag = 1965, ref = 8 <-- is a vgroup
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Example6_10.sce
//chapter-6,Example6_10,pg 495 Res=(1/2^8)//resolution T=8*10^-6//total time n=256//no. of conversions t=(T/n)//time req. by one conversion S=(1/t)//speed of conversion printf("speed of conversion \n") printf("S=%.2f Hz\n",S)
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//Network Theorem-1 //pg no.-2.7 //example2.3 a=4; b=3; c=6; //star to delta conversion R1=c+a+((a*c)/b); R2=c+b+((c*b)/a); R3=a+b+((a*b)/c); x=1.35; y=0.9; RAB=(c*(x+y))/(c+x+y); printf("\nR1 = %.f Ohm",R1); printf("\nR2 = %.1f Ohm",R2); printf("\nR3 = %.f Ohm",R3); printf("\nThe network can be simplified as, \nRAB = %.2f Ohm",RAB);
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125.ted.sci
i do two things i design mobile computers and i study brains and today s talk is about brains and yay somewhere i have a brain fan out there i m going to if i can have my first slide up here and you ll see the title of my talk and my two affiliations so what i m going to talk about is why we do n t have a good brain theory why it is important that we should develop one and what we can do about it and i ll try to do all that in 20 minutes i have two affiliations most of you know me from my palm and handspring days but i also run a nonprofit scientific research institute called the redwood neuroscience institute in menlo park and we study theoretical neuroscience and we study how the neocortex works i m going to talk all about that i have one slide on my other life the computer life and that s the slide here these are some of the products i ve worked on over the last 20 years starting back from the very original laptop to some of the first tablet computers and so on and ending up most recently with the treo and we re continuing to do this and i ve done this because i really believe that mobile computing is the future of personal computing and i m trying to make the world a little bit better by working on these things but this was i have to admit all an accident i really did n t want to do any of these products and very early in my career i decided i was not going to be in the computer industry and before i tell you about that i just have to tell you this one little picture of graffiti there i picked off the web the other day i was looking for a picture of graffiti little text input language and i found the website dedicated to teachers who want to make these you know the script writing things across the top of their blackboard and they had added graffiti to it and i m sorry about that so what happened was when i was young and got out of engineering school at cornell in 79 i decided i went to work for intel and i was in the computer industry and three months into that i fell in love with something else and i said i made the wrong career choice here and i fell in love with brains this is not a real brain this is a picture of one a line drawing but i do n t remember exactly how it happened but i have one recollection which was pretty strong in my mind in september 1979 scientific american came out with a single topic issue about the brain and it was quite good it was one of the best issues ever and they talked about the neuron and development and disease and vision and all the things you might want to know about brains it was really quite impressive and one might have the impression that we really knew a lot about brains but the last article in that issue was written by francis crick of dna fame today is i think the 50th anniversary of the discovery of dna and he wrote a story basically saying well this is all well and good but you know what we do n t know diddley squat about brains and no one has a clue how these things work so do n t believe what anyone tells you this is a quote from that article he said what is conspicuously lacking he s a very proper british gentleman so what is conspicuously lacking is a broad framework of ideas in which to interpret these different approaches i thought the word framework was great he did n t say we did n t even have a theory he says we do n t even know how to begin to think about it we do n t even have a framework we are in the pre paradigm days if you want to use thomas kuhn and so i fell in love with this and said look we have all this knowledge about brains how hard can it be and this is something we can work on my lifetime i felt i could make a difference and so i tried to get out of the computer business into the brain business first i went to mit the ai lab was there and i said well i want to build intelligent machines too but the way i want to do it is to study how brains work first and they said oh you do n t need to do that we re just going to program computers that s all we need to do and i said no you really ought to study brains they said oh you know you re wrong and i said no you re wrong and i did n t get in but i was a little disappointed pretty young but i went back again a few years later and this time was in california and i went to berkeley and i said i ll go in from the biological side so i got in in the ph d program in biophysics and i was all right i m studying brains now and i said well i want to study theory and they said oh no you ca n t study theory about brains that s not something you do you ca n t get funded for that and as a graduate student you ca n t do that so i said oh my gosh i was very depressed i said but i can make a difference in this field so what i did is i went back in the computer industry and said well i ll have to work here for a while do something that s when i designed all those computer products and i said i want to do this for four years make some money like i was having a family and i would mature a bit and maybe the business of neuroscience would mature a bit well it took longer than four years it s been about 16 years but i m doing it now and i m going to tell you about it so why should we have a good brain theory well there s lots of reasons people do science one is the most basic one is people like to know things we re curious and we just go out and get knowledge you know why do we study ants well it s interesting maybe we ll learn something really useful about it but it s interesting and fascinating but sometimes a science has some other attributes which makes it really really interesting sometimes a science will tell something about ourselves it ll tell us who we are rarely you know evolution did this and copernicus did this where we have a new understanding of who we are and after all we are our brains my brain is talking to your brain our bodies are hanging along for the ride but my brain is talking to your brain and if we want to understand who we are and how we feel and perceive we really understand what brains are another thing is sometimes science leads to really big societal benefits and technologies or businesses or whatever that come out of it and this is one too because when we understand how brains work we re going to be able to build intelligent machines and i think that s actually a good thing on the whole and it s going to have tremendous benefits to society just like a fundamental technology so why do n t we have a good theory of brains and people have been working on it for 100 years well let s first take a look at what normal science looks like this is normal science normal science is a nice balance between theory and experimentalists and so the theorist guys say well i think this is what s going on and the experimentalist says no you re wrong and it goes back and forth you know this works in physics this works in geology but if this is normal science what does neuroscience look like this is what neuroscience looks like we have this mountain of data which is anatomy physiology and behavior you ca n t imagine how much detail we know about brains there were 28 000 people who went to the neuroscience conference this year and every one of them is doing research in brains a lot of data but there s no theory there s a little wimpy box on top there and theory has not played a role in any sort of grand way in the neurosciences and it s a real shame now why has this come about if you ask neuroscientists why is this the state of affair they ll first of all admit it but if you ask them they ll say well there s various reasons we do n t have a good brain theory some people say well we do n t still have enough data we need to get more information there s all these things we do n t know well i just told you there s so much data coming out your ears we have so much information we do n t even know how to begin to organize it what good is more going to do maybe we ll be lucky and discover some magic thing but i do n t think so this is actually a symptom of the fact that we just do n t have a theory we do n t need more data we need a good theory about it another one is sometimes people say well brains are so complex it ll take another 50 years i even think chris said something like this yesterday i m not sure what you said chris but something like well it s one of the most complicated things in the universe that s not true you re more complicated than your brain you ve got a brain and it s also although the brain looks very complicated things look complicated until you understand them that s always been the case and so all we can say well my neocortex which is the part of the brain i m interested in has 30 billion cells but you know what it s very very regular in fact it looks like it s the same thing repeated over and over and over again it s not as complex as it looks that s not the issue some people say brains ca n t understand brains very zen like whoo you know it sounds good but why i mean what s the point it s just a bunch of cells you understand your liver it s got a lot of cells in it too right so you know i do n t think there s anything to that and finally some people say well you know i do n t feel like a bunch of cells you know i m conscious i ve got this experience i m in the world you know i ca n t be just a bunch of cells well you know people used to believe there was a life force to be living and we now know that s really not true at all and there s really no evidence that says well other than people just have disbelief that cells can do what they do and so if some people have fallen into the pit of metaphysical dualism some really smart people too but we can reject all that no i m going to tell you there s something else and it s really fundamental and this is what it is there s another reason why we do n t have a good brain theory and it s because we have an intuitive strongly held but incorrect assumption that has prevented us from seeing the answer there s something we believe that just it s obvious but it s wrong now there s a history of this in science and before i tell you what it is i m going to tell you a bit about the history of it in science you look at some other scientific revolutions and this case i m talking about the solar system that s copernicus darwin s evolution and tectonic plates that s wegener they all have a lot in common with brain science first of all they had a lot of unexplained data a lot of it but it got more manageable once they had a theory the best minds were stumped really really smart people we re not smarter now than they were then it just turns out it s really hard to think of things but once you ve thought of them it s kind of easy to understand it my daughters understood these three theories in their basic framework by the time they were in kindergarten and now it s not that hard you know here s the apple here s the orange you know the earth goes around that kind of stuff finally another thing is the answer was there all along but we kind of ignored it because of this obvious thing and that s the thing it was an intuitive strong held belief that was wrong in the case of the solar system the idea that the earth is spinning and the surface of the earth is going like a thousand miles an hour and the earth is going through the solar system about a million miles an hour this is lunacy we all know the earth is n t moving do you feel like you re moving a thousand miles an hour of course not you know and someone who said well it was spinning around in space and it s so huge they would lock you up and that s what they did back then so it was intuitive and obvious now what about evolution evolution s the same thing we taught our kids well the bible says you know god created all these species cats are cats dogs are dogs people are people plants are plants they do n t change noah put them on the ark in that order blah blah blah and you know the fact is if you believe in evolution we all have a common ancestor and we all have a common ancestry with the plant in the lobby this is what evolution tells us and it s true it s kind of unbelievable and the same thing about tectonic plates you know all the mountains and the continents are kind of floating around on top of the earth you know it s like it does n t make any sense so what is the intuitive but incorrect assumption that s kept us from understanding brains now i m going to tell it to you and it s going to seem obvious that that is correct and that s the point right then i m going to have to make an argument why you re incorrect about the other assumption the intuitive but obvious thing is that somehow intelligence is defined by behavior that we are intelligent because of the way that we do things and the way we behave intelligently and i m going to tell you that s wrong what it is is intelligence is defined by prediction and i m going to work you through this in a few slides here give you an example of what this means here s a system engineers like to look at systems like this scientists like to look at systems like this they say well we have a thing in a box and we have its inputs and its outputs the ai people said well the thing in the box is a programmable computer because that s equivalent to a brain and we ll feed it some inputs and we ll get it to do something have some behavior and alan turing defined the turing test which is essentially saying we ll know if something s intelligent if it behaves identical to a human a behavioral metric of what intelligence is and this has stuck in our minds for a long period of time reality though i call it real intelligence real intelligence is built on something else we experience the world through a sequence of patterns and we store them and we recall them and when we recall them we match them up against reality and we re making predictions all the time it s an eternal metric there s an eternal metric about us sort of saying do we understand the world am i making predictions and so on you re all being intelligent right now but you re not doing anything maybe you re scratching yourself or picking your nose i do n t know but you re not doing anything right now but you re being intelligent you re understanding what i m saying because you re intelligent and you speak english you know what word is at the end of this sentence the word came into you and you re making these predictions all the time and then what i m saying is is that the eternal prediction is the output in the neocortex and that somehow prediction leads to intelligent behavior and here s how that happens let s start with a non intelligent brain well i ll argue a non intelligent brain we got hold of an old brain and we re going to say it s like a non mammal like a reptile so i ll say an alligator we have an alligator and the alligator has some very sophisticated senses it s got good eyes and ears and touch senses and so on a mouth and a nose it has very complex behavior it can run and hide it has fears and emotions it can eat you you know it can attack it can do all kinds of stuff but we do n t consider the alligator very intelligent not like in a human sort of way but it has all this complex behavior already now in evolution what happened first thing that happened in evolution with mammals we started to develop a thing called the neocortex and i m going to represent the neocortex here by this box that s sticking on top of the old brain neocortex means new layer it is a new layer on top of your brain if you do n t know it it s the wrinkly thing on the top of your head that it s got wrinkly because it got shoved in there and does n t fit no really that s what it is it s about the size of a table napkin and it does n t fit so it gets all wrinkly now look at how i ve drawn this here the old brain is still there you still have that alligator brain you do it s your emotional brain it s all those things and all those gut reactions you have and on top of it we have this memory system called the neocortex and the memory system is sitting over the sensory part of the brain and so as the sensory input comes in and feeds from the old brain it also goes up into the neocortex and the neocortex is just memorizing it s sitting there saying ah i m going to memorize all the things that are going on where i ve been people i ve seen things i ve heard and so on and in the future when it sees something similar to that again so in a similar environment or the exact same environment it ll play it back it ll start playing it back oh i ve been here before and when you ve been here before this happened next it allows you to predict the future it allows you to literally it feeds back the signals into your brain they ll let you see what s going to happen next will let you hear the word sentence before i said it and it s this feeding back into the old brain that ll allow you to make very more intelligent decisions this is the most important slide of my talk so i ll dwell on it a little bit and so all the time you say oh i can predict the things and if you re a rat and you go through a maze and then you learn the maze the next time you re in a maze you have the same behavior but all of a sudden you re smarter because you say oh i recognize this maze i know which way to go i ve been here before i can envision the future and that s what it s doing in humans by the way this is true for all mammals it s true for other mammals and in humans it got a lot worse in humans we actually developed the front part of the neocortex called the anterior part of the neocortex and nature did a little trick it copied the posterior part the back part which is sensory and put it in the front part and humans uniquely have the same mechanism on the front but we use it for motor control so we are now able to make very sophisticated motor planning things like that i do n t have time to get into all this but if you want to understand how a brain works you have to understand how the first part of the mammalian neocortex works how it is we store patterns and make predictions so let me give you a few examples of predictions i already said the word sentence in music if you ve heard a song before if you heard jill sing those songs before when she sings them the next note pops into your head already you anticipate it as you re going if it was an album of music the end of one album the next song pops into your head and these things happen all the time you re making these predictions i have this thing called the altered door thought experiment and the altered door thought experiment says you have a door at home and when you re here i m changing it i ve got a guy back at your house right now moving the door around and they re going to take your doorknob and move it over two inches and when you go home tonight you re going to put your hand out there and you re going to reach for the doorknob and you re going to notice it s in the wrong spot and you ll go whoa something happened it may take a second to figure out what it was but something happened now i could change your doorknob in other ways i can make it larger or smaller i can change its brass to silver i could make it a lever i can change your door put colors on i can put windows in i can change a thousand things about your door and in the two seconds you take to open your door you re going to notice that something has changed now the engineering approach to this the ai approach to this is to build a door database it has all the door attributes and as you go up to the door you know let s check them off one at time door door door you know color you know what i m saying we do n t do that your brain does n t do that what your brain is doing is making constant predictions all the time about what is going to happen in your environment as i put my hand on this table i expect to feel it stop when i walk every step if i missed it by an eighth of an inch i ll know something has changed you re constantly making predictions about your environment i ll talk about vision here briefly this is a picture of a woman and when you look at people your eyes are caught over at two to three times a second you re not aware of this but your eyes are always moving and so when you look at someone s face you d typically go from eye to eye to eye to nose to mouth now when your eye moves from eye to eye if there was something else there like a nose you d see a nose where an eye is supposed to be and you d go oh shit you know there s something wrong about this person and that s because you re making a prediction it s not like you just look over there and say what am i seeing now a nose that s okay no you have an expectation of what you re going to see every single moment and finally let s think about how we test intelligence we test it by prediction what is the next word in this you know this is to this as this is to this what is the next number in this sentence here s three visions of an object what s the fourth one that s how we test it it s all about prediction so what is the recipe for brain theory first of all we have to have the right framework and the framework is a memory framework not a computation or behavior framework it s a memory framework how do you store and recall these sequences or patterns it s spatio temporal patterns then if in that framework you take a bunch of theoreticians now biologists generally are not good theoreticians it s not always true but in general there s not a good history of theory in biology so i found the best people to work with are physicists engineers and mathematicians who tend to think algorithmically then they have to learn the anatomy and they ve got to learn the physiology you have to make these theories very realistic in anatomical terms anyone who gets up and tells you their theory about how the brain works and does n t tell you exactly how it s working in the brain and how the wiring works in the brain it is not a theory and that s what we re doing at the redwood neuroscience institute i would love to have more time to tell you we re making fantastic progress in this thing and i expect to be back up on this stage maybe this will be some other time in the not too distant future and tell you about it i m really really excited this is not going to take 50 years at all so what will brain theory look like first of all it s going to be a theory about memory not like computer memory it s not at all like computer memory it s very very different and it s a memory of these very high dimensional patterns like the things that come from your eyes it s also memory of sequences you cannot learn or recall anything outside of a sequence a song must be heard in sequence over time and you must play it back in sequence over time and these sequences are auto associatively recalled so if i see something i hear something it reminds me of it and then it plays back automatically it s an automatic playback and prediction of future inputs is the desired output and as i said the theory must be biologically accurate it must be testable and you must be able to build it if you do n t build it you do n t understand it so one more slide here what is this going to result in are we going to really build intelligent machines absolutely and it s going to be different than people think no doubt that it s going to happen in my mind first of all it s going to be built up we re going to build the stuff out of silicon the same techniques we use for building silicon computer memories we can use for here but they re very different types of memories and we re going to attach these memories to sensors and the sensors will experience real live real world data and these things are going to learn about their environment now it s very unlikely the first things you re going to see are like robots not that robots are n t useful and people can build robots but the robotics part is the hardest part that s the old brain that s really hard the new brain is actually kind of easier than the old brain so the first thing we re going to do are the things that do n t require a lot of robotics so you re not going to see c 3po you re going to more see things like you know intelligent cars that really understand what traffic is and what driving is and have learned that certain types of cars with the blinkers on for half a minute probably are n t going to turn things like that we can also do intelligent security systems anywhere where we re basically using our brain but not doing a lot of mechanics those are the things that are going to happen first but ultimately the world s the limit here i do n t know how this is going to turn out i know a lot of people who invented the microprocessor and if you talk to them they knew what they were doing was really significant but they did n t really know what was going to happen they could n t anticipate cell phones and the internet and all this kind of stuff they just knew like hey they were going to build calculators and traffic light controllers but it s going to be big in the same way this is like brain science and these memories are going to be a very fundamental technology and it s going to lead to very unbelievable changes in the next 100 years and i m most excited about how we re going to use them in science so i think that s all my time i m over it and i m going to end my talk right there
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/Sem2_Mathe/Labor_3/Aufgaben.sce
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42ow0rm/UNI
78b4bbc339cffb7124e5c8112827bec5a4799b7c
56a5a1429a458544f5a33e3480f51c03849872f7
refs/heads/master
2020-03-31T22:34:19.230790
2019-01-03T20:00:27
2019-01-03T20:00:27
152,623,141
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859
sce
Aufgaben.sce
//Aufgabe 1 //Ein Skript wird einmal ausgeführt, Fkten werden eingebunden und mehrfach verwendet //Aufgabe 2 //Umgebung = Global Scope //Lokal = local Scope //Aufgabe 3 //um eine Datei auszuführen (.sce) oder eine Funktion einzubinden (.sci). //Aufgabe 4 A = [1 4 2; 5 3 6; 4 5 6]; B = [1 4 0; 2 5 0 ; 3 6 0]; if (abs(A - B) ~= 1) a = 1 //YO end //Aufgabe 5 //exec('C:\Users\W1nd0ws\Desktop\Mathe Labor\Labor_3\Aufgabe_5.sci', -1) exec Aufgabe_5.sci x1 = 1; y1 = 1; x2 = -1; y2 = 1; x3 = 0; y3 = 0; Z = Aufgabe_5(x1, y1, x2, y2, x3, y3) //Aufgabe 6 exec Aufgabe_6.sci x1 = 1; y1 = 1; x2 = -1; y2 = 1; x3 = 0; y3 = 0; Z = Aufgabe_6(x1, y1, x2, y2, x3, y3) //Aufgabe 7 exec Aufgabe_7.sci x1 = 1; y1 = 1; x2 = -1; y2 = 1; x3 = 0; y3 = 0; Z = Aufgabe_5(x1, y1, x2, y2, x3, y3)
32e5a73470659c8e9b470abc312c6a73698a8a8f
cd227ab3e84ec2423b0c65d66ced9003ea032200
/SCUMI/Mixed/ErrFile/out.mix2.sci
05659e459085089fd70e50119424b49b88adf81b
[]
no_license
seanken/sc_compare_helpers
24d4e5aabc04036c2830e75c69c5c895d9592752
e5e9c2e93ba7b85f6a30176bb32a761a6c28eaab
refs/heads/master
2020-04-05T13:15:46.004764
2018-11-09T17:36:57
2018-11-09T17:36:57
156,894,365
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Scilab
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sci
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Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell1/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell1/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell1/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell1/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell2/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell2/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell2/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell2/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell3/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell3/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell3/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell3/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell4/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell4/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell4/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell4/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell5/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell5/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell5/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell5/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell6/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell6/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell6/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell6/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell7/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell7/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell7/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell7/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell8/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell8/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell8/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell8/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell9/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell9/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell9/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell9/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell10/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell10/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell10/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell10/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell11/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell11/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell11/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell11/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell12/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell12/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell12/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell12/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell13/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell13/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell13/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell13/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell14/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell14/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell14/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell14/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell15/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell15/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell15/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell15/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell16/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell16/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell16/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell16/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell17/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell17/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell17/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell17/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell18/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell18/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell18/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell18/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell19/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell19/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell19/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell19/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell20/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell20/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell20/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell20/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell21/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell21/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell21/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell21/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell22/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell22/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell22/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell22/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell23/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell23/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell23/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell23/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell24/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell24/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell24/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell24/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell25/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell25/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell25/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell25/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell26/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell26/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell26/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell26/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell27/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell27/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell27/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell27/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell28/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell28/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell28/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell28/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell29/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell29/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell29/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell29/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell30/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell30/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell30/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell30/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell31/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell31/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell31/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell31/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell32/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell32/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell32/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell32/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell33/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell33/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell33/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell33/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell34/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell34/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell34/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell34/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell35/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell35/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell35/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell35/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell36/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell36/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell36/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell36/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell37/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell37/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell37/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell37/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell38/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell38/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell38/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell38/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell39/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell39/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell39/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell39/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell40/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell40/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell40/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell40/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell41/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell41/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell41/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell41/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell42/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell42/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell42/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell42/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell43/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell43/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell43/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell43/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell44/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell44/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell44/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell44/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell45/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell45/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell45/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell45/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell46/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell46/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell46/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell46/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell47/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell47/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell47/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell47/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell48/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell48/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell48/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell48/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell49/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell49/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell49/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell49/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell50/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell50/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell50/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell50/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell51/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell51/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell51/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell51/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell52/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell52/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell52/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell52/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell53/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell53/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell53/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell53/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell54/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell54/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell54/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell54/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell55/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell55/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell55/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell55/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell56/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell56/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell56/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell56/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell57/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell57/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell57/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell57/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell58/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell58/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell58/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell58/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell59/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell59/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell59/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell59/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell60/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell60/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell60/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell60/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell61/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell61/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell61/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell61/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell62/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell62/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell62/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell62/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell63/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell63/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell63/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell63/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell64/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell64/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell64/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell64/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell65/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell65/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell65/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell65/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell66/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell66/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell66/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell66/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell67/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell67/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell67/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell67/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell68/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell68/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell68/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell68/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell69/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell69/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell69/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell69/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell70/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell70/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell70/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell70/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell71/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell71/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell71/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell71/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell72/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell72/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell72/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell72/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell73/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell73/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell73/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell73/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell74/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell74/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell74/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell74/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell75/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell75/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell75/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell75/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell76/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell76/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell76/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell76/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell77/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell77/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell77/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell77/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell78/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell78/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell78/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell78/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell79/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell79/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell79/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell79/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell80/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell80/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell80/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell80/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell81/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell81/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell81/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell81/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell82/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell82/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell82/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell82/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell83/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell83/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell83/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell83/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell84/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell84/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell84/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell84/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell85/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell85/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell85/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell85/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell86/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell86/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell86/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell86/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell87/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell87/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell87/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell87/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell88/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell88/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell88/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell88/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell89/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell89/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell89/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell89/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell90/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell90/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell90/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell90/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell91/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell91/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell91/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell91/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell92/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell92/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell92/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell92/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell93/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell93/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell93/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell93/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell94/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell94/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell94/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell94/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell95/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell95/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell95/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell95/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell96/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell96/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell96/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell96/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell97/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell97/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell97/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell97/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell98/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell98/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell98/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell98/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell99/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell99/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell99/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell99/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell100/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell100/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell100/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell100/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell101/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell101/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell101/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell101/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell102/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell102/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell102/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell102/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell103/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell103/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell103/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell103/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell104/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell104/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell104/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell104/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell105/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell105/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell105/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell105/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell106/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell106/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell106/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell106/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell107/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell107/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell107/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell107/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell108/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell108/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell108/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell108/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell109/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell109/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell109/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell109/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell110/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell110/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell110/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell110/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell111/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell111/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell111/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell111/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell112/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell112/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell112/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell112/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell113/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell113/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell113/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell113/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell114/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell114/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell115/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell115/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell115/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell115/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell114/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell114/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell116/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell116/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell116/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell116/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell117/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell117/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell118/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell118/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell118/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell118/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell117/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell117/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell119/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell119/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell119/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell119/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell120/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell120/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell121/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell121/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell121/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell121/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell120/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell120/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell122/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell122/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell122/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell122/results.star_align.bam Running featureCount errors Count! Done! Clean! Run STAR! Tag bam! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell124/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell124/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell124/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell124/results.star_align.bam Running featureCount errors Count! Count! Done! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell125/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell125/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell125/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell125/results.star_align.bam Running featureCount errors Count! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell126/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell126/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell127/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell127/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/prSubsamples! mpare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell127/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell127/results.star_align.bam Running featureCount errors Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell129/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell129/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell129/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell129/results.star_align.bam Running featureCount errors Count! Count! Done! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell130/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell130/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell131/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell131/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell131/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell131/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell130/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell130/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell132/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell132/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell132/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell132/results.star_align.bam Running featureCount errors Count! Done! Clean! Run STAR! Tag bam! Setup! gevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell133/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell133/results.star_align.bam Running featureCount errors Count! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell134/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell134/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell134/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell134/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell135/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell135/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell136/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell136/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell136/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell136/results.star_align.bam Running featureCount errors Count! Count! Done! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell137/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell137/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell137/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell137/results.star_align.bam Running featureCount errors Count! Done! Clean! Run STAR! Tag bam! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell139/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell139/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell138/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell138/results.star_align.bam Running featureCount errors Count! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell139/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell139/results.star_align.bam Running featureCount errors Count! Done! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell140/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell140/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell140/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell140/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! n STAR! Tag bam! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell142/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell142/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell142/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell142/results.star_align.bam Running featureCount errors Count! Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell143/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell143/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! n STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell143/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell143/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell145/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell145/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell145/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell145/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell144/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell144/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell146/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell146/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell146/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell146/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell148/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell148/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell148/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell148/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell147/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell147/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell149/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell149/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell149/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell149/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell151/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell151/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell151/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell151/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell150/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell150/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell152/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell152/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell152/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell152/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! n STAR! Tag bam! tmp/ssimmons/scumi/mixed2/SciSeq/Cell154/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell154/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell154/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell154/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell153/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell153/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell155/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell155/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell155/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell155/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! n STAR! Tag bam! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell157/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell157/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell157/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell157/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell156/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell156/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell158/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell158/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell158/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell158/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell160/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell160/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell160/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell160/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell159/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell159/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell161/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell161/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Setup! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell161/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell161/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell163/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell163/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell163/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell163/results.star_align.bam Running featureCount errors Count! Done! egevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell162/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell162/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell164/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell164/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Done! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell164/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell164/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell165/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell165/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell166/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell166/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell166/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell166/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell165/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell165/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell167/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell167/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell167/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell167/results.star_align.bam Running featureCount errors Count! Done! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell168/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell168/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell169/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell169/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell169/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell169/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell168/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell168/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell170/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell170/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell170/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell170/results.star_align.bam Running featureCount errors Count! Done! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell171/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell171/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell172/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell172/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell172/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell172/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell171/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell171/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell173/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell173/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell173/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell173/results.star_align.bam Running featureCount errors Count! Done! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell174/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell174/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell175/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell175/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell175/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell175/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell174/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell174/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell176/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell176/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell176/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell176/results.star_align.bam Running featureCount errors Count! Done! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell177/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell177/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell178/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell178/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell178/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell178/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell177/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell177/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell179/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell179/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell179/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell179/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell180/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell180/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell181/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell181/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell181/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell181/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell180/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell180/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell182/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell182/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell182/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell182/results.star_align.bam Running featureCount errors Count! Done! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell183/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell183/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell184/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell184/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell184/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell184/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell183/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell183/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell185/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell185/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell185/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell185/results.star_align.bam Running featureCount errors Count! Done! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell186/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell186/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell187/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell187/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell187/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell187/results.star_align.bam Running featureCount errors Count! Done! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell186/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell186/results.star_align.bam Running featureCount errors Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell188/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell188/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell188/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell188/results.star_align.bam Running featureCount errors Count! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell189/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell189/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell190/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell190/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell190/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell190/results.star_align.bam Running featureCount errors Count! Done! /ahg/reCombine! rojects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell189/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell189/results.star_align.bam Running featureCount errors Count! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell191/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell191/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell191/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell191/results.star_align.bam Running featureCount errors Count! Done! Setup! Combine! /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell192/comb.1.fastq.gz /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell192/comb.2.fastq.gz Subsamples! Clean fastqs! Merge Fastq! Clean! Run STAR! Tag bam! /ahg/regevdata/projects/sc_compare/software/subread-1.6.2-Linux-x86_64/bin//featureCounts -g gene_id -t exon -R BAM -T 1 -F GTF -a /ahg/regevdata/projects/sc_compare/ref/cellranger/refdata-cellranger-hg19_and_mm10-2.1.0/genes/genes.gtf -s 1 -M -o /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell192/results.star_align.bam.annotation /broad/hptmp/ssimmons/scumi/mixed2/SciSeq/Cell192/results.star_align.bam Running featureCount errors Count! Done!
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fc=5000; Ac=10; t=linspace(0,10*(10^(-3)),500); Vc=Ac*sin(((2*%pi)*fc)*t); subplot(311) plot(t,Vc) fm=500; Am=5; Vm=Am*sin(((2*%pi)*fm)*t); subplot(312) plot(t,Vm) m=Am/Ac; Vt=(Am*sin(((2*%pi)*fm)*t)).*(Ac*sin(((2*%pi)*fc)*t)); subplot(313) plot(t,Vt)
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//Chapter-3,Example3_17_16,pg 3-41 E=3000 //loss of energy per cycle per cm^3 m=12*10^3 //wt of the core d=7.5 //density of iron n=50 //frequency V=m/d //volume of the core El=E*V*n*60*60 //loss of energy per hour printf("Loss of energy per hour =") disp(El) printf("Erg")
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clc //initialisation of variables e= 0.82 m= 5 //kg/s T3= 450 //C T1= 200 //C //CALCULATIONS Q= e*m*1.0035*(T3-T1) //RESULTS printf (' rate of transfer = %.1f kW',Q)
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function [x,y] = Euler(a,b,h,y0,df) x=a:h:b; y(1)=y0; for i=2:length(x) y(i) = y(i-1)+ h*df(x(i-1),y(i-1) ); end endfunction function [x,y,z] = Euler2(a,b,h,y0,z0,df,df2) x = a:h:b y(1) = y0; z(1) = z0; for i=2:length(x) z(i) = z(i-1)+ h*df2(x(i-1),y(i-1),z(i-1)); y(i) = y(i-1)+ h*df(x(i-1),y(i-1),z(i-1)); end endfunction function [x,y] = RK2(a,b,h,y0,df) x= a:h:b y(1)= y0; for i=2:length(x) k1 = df (x(i-1),y(i-1)); k2 = df (x(i),y(i-1)+ h*k1); y(i) = y(i-1)+h/2*(k1 +k2); end endfunction function [x,y,z] = RK2Order2(a,b,h,y0,z0,df1,df2) x= a:h:b; y(1)= y0; z(1)= z0; for i=2:length(x) k1y = df1 (x(i-1), y(i-1), z(i-1)); k1z = df2 (x(i-1), y(i-1), z(i-1)); k2y = df1 (x(i-1) + h, y(i-1)+ h*k1y, z(i-1) + h*k1z); k2z = df2 (x(i-1) + h, y(i-1)+ h*k1z, z(i-1) + h*k1z); z(i) = z(i-1) + h/2*(k1z + k2z); y(i) = y(i-1) + h/2*(k1y + k2y); end endfunction function [x,y,z] = RK4Order2(a,b,h,y0,z0,df1,df2) x= a:h:b y(1)= y0; z(1)= z0; for i=2:length(x) k1y = df1 (x(i-1), y(i-1), z(i-1)); k1z = df2 (x(i-1), y(i-1), z(i-1)); k2y = df1 (x(i-1) + h/2, y(i-1)+ h/2*k1y, z(i-1) + h/2*k1z); k2z = df2 (x(i-1) + h/2, y(i-1)+ h/2*k1y, z(i-1) + h/2*k1z); k3z = df2 (x(i-1) + h/2, y(i-1)+ h/2*k2y, z(i-1) + h/2*k2z); k3y = df1 (x(i-1) + h/2, y(i-1)+ h/2*k2y, z(i-1) + h/2*k2z); k4y = df1 (x(i), y(i-1) + h*k3y, z(i-1)+ h*k3z); k4z = df2 (x(i), y(i-1) + h*k3y, z(i-1)+ h*k3z); z(i) = z(i-1) + h/6*(k1z + 2*k2z + 2*k3z + k4z); y(i) = y(i-1) + h/6*(k1y + 2*k2y + 2*k3y + k4y); end endfunction function a= poli(x,y,k) n = length(x); for i =1 : n for j=1: k+1 v(i,j) = x(i)^(j-1); end b(i) = y(i); end a = inv(v'* v)*(v'*b); endfunction
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clc kVA=6.3 //upper limit for kVA per horsepower hp=10 //rating of induction motor in hp.(1 hp=746 watts) V=230 //voltage rating of the motor I=(kVA*hp*1000)/(sqrt(3)*V) mprintf("I=%fA\n",I)//ans may vary due to roundoff error
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clc //initialisation of variables mO2=1.33 //lb mCO2=3.67 //lb CvO2=0.155 //Btu/lb F CvCO2=0.165 //Btu/lb F Cc=0.170 //Btu/lb F t2=1000 //F tB=68 //F t=300 //F mC=1 mO=4 //Calculations deltaE1=mO2*CvO2*(t2-tB) + mCO2*CvCO2*(t2-tB) deltaE2=mC*Cc*(tB-t) + mO*CvO2*(tB-t) E= -14087 //Btu Q=deltaE1+E+deltaE2 //Results printf ('Heat Transfer from the system = %.2f',Q)
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clc //initialisation of variables v= 50 //ft/sec d= 2 //in w= 62.4 //lbf/ft^3 v1= 10 //ft/sec //CALCULATIONS m= w*(%pi/4)*d^2*v/144 du= v1-v F= m*du F1= -F*(1/32.2) //RESULTS printf (' force exerted by thejet = %.1f lbf',F1)
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(unwatch all) (clear) (set-sequence-operator-recognition FALSE) (setgen 1) (dribble-on "seqop.out") (batch "seqop.bat") (dribble-off) (set-sequence-operator-recognition FALSE) (clear) (open "seqop.rsl" seqop "w") (load "compline.clp") (printout seqop "seqop.bat differences are as follows:" crlf) (compare-files seqop.exp seqop.out seqop) (close seqop)
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//Francis Brylle G. Sinco //MS Applied Mathematics //Math 288 //University of the Philippines - Diliman //29 January 2011 // Steepest Descent Algorithm with Backtracking (Armijo) Linesearch Applied to Minimize the Rosenbrock Function //INITIALIZATION OF QUANTITIES rho=0.9; a=0.5; k=1; tau=10e-6;//relative error tolerance x0=[1.2;1.2];//initial guess for the minimizer //FUNCTION DEFINITIONS function z = f(x)//Rosenbrock Function z = 100*(x(2)-x(1)^2)^2 + (1-x(1))^2; endfunction; function g = gradient(x) g = [-400*x(1)*(x(2)-x(1)^2)-2*(1-x(1)); 200*(x(2)-x(1)^2)]; endfunction; //MAIN xstar = [1;1]; //actual minimizer x=x0; while (norm(gradient(x)) > tau)//relative error criterion loop //disp(k)//prints the iteration number //disp(x)//prints the iterate d = -gradient(x); t=1;//initial guess for the steplength while (f(x+t*d) > f(x)+a*t*gradient(x)'*d) //Armijo condition loop t = rho*t; end; //disp(t)//prints the steplength used for each iteration x = x + t*d; k=k+1; end; x//final answer (computed minimizer) k//the iteration number when the Relative Error Criterion is satisfied err = norm(x-xstar) //prints the absolute difference between the actual and the computed minimizer ///////////////////////////////END////////////////////////////////////
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function [x,y,typ]=comparator_fgota(job,arg1,arg2) x=[];y=[];typ=[]; select job case 'plot' then standard_draw(arg1); case 'getinputs' then [x,y,typ]=standard_inputs(arg1); case 'getoutputs' then [x,y,typ]=standard_outputs(arg1); case 'getorigin' then [x,y]=standard_origin(arg1); case 'set' then x=arg1; graphics=arg1.graphics; exprs=graphics.exprs; model=arg1.model; while %t do [ok,num_of_blk, ibias, p_ibias,n_ibias,smcap,exprs]=getvalue('Set FG OTA Parameters',['No. of FG OTAs';'Ibias';'P Ibias'; 'N Ibias';'Use small cap Yes-1 No-0'],list('vec',1,'str',-1,'str',-1,'str',-1,'vec',-1),exprs); if ~ok then break,end if num_of_blk ~= 1 then if ((size(evstr(ibias),'r') ~= num_of_blk) & (size(evstr(ibias),'c') ~= num_of_blk)) | ((size(evstr(p_ibias),'r') ~= num_of_blk) & (size(evstr(p_ibias),'c') ~= num_of_blk)) | ((size(evstr(n_ibias),'r') ~= num_of_blk) & (size(evstr(n_ibias),'c') ~= num_of_blk)) then message('The number of ibias/pbias/nbias values that you have entered does not match the number of Peak Detector blocks.'); ok=%f; end end if length(smcap) ~= num_of_blk then message('The number of small cap decision values that you have entered does not match the number of Peak Detector blocks.'); ok=%f; end if ok then model.ipar=[num_of_blk smcap]; model.rpar=[ibias,p_ibias,n_ibias]; graphics.exprs=exprs; x.graphics=graphics; x.model=model; break end end case 'define' then num_of_blk=1; smcap = [0]; ibias='10e-9'; p_ibias='10e-9'; n_ibias='10e-9 '; model=scicos_model(); model.sim=list('ota_func',5); model.in=[1;1]; model.in2=[1;1]; model.intyp=[-1;-1]; model.out=-1; model.out2=1; model.outtyp=-1; model.ipar=[num_of_blk smcap]; model.rpar=[ibias,p_ibias,n_ibias]; model.blocktype='c'; model.dep_ut=[%t %f]; exprs=[sci2exp(num_of_blk);ibias;p_ibias;n_ibias;sci2exp(smcap)]; gr_i=['text=[''FG''];';'xstringb(orig(1),orig(2),text,sz(1),sz(2),''fill'');']; x=standard_define([7 3],model,exprs,gr_i); end endfunction
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//Page Number: 215 //Example 4.12 clc; //Given f=5D+9;//hz sig=5.813D+7; er=2.25; tandel=4D-4; c=3D+8; //m/s h01=3.832; u=4D-7*%pi; //Length of resonator lamr=c/(f*sqrt(er)); d=sqrt([{(((2*3.832)^2)+(%pi*%pi))*(lamr*lamr)}/(2*2*%pi*%pi)]); disp('cm',d*100,'Length of resonator:'); //Q of resonator n=(120*%pi)/sqrt(er); Rs=sqrt((f*u)/sig); a=d/2; Qw1=n*[[(h01/a)^2+(%pi/d)^2]^(3/2)]; Qw2=2*Rs*[((h01*h01)/(a*a*a))+((2*%pi*%pi)/(d*d*d))]; Qw=Qw1/Qw2; Qd=1/tandel; Q=(Qw*Qd)/(Qw+Qd); disp(Q,'Q of resonator:'); //Value of Qw is calculated wrong in the book, it should be 50057.91 instead of 53473.8 //Hence the value of Q also differs
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comet3d2.sci
// Scilab ( http://www.scilab.org/ ) - This file is part of Scilab // Copyright (C) 2011 - INRIA - Serge Steer <serge.steer@inria.fr> // // // This file must be used under the terms of the CeCILL. // This source file is licensed as described in the file COPYING, which // you should have received as part of this distribution. The terms // are also available at; // http://www.cecill.info/licences/Licence_CeCILL_V2.1-en.txt function comet3d2(varargin) //Comet-like trajectory. // comet(y) displays an animated comet plot of the vector y. // comet(x,y) displays an animated comet plot of vector y vs. x. // comet(x,y,p) uses a comet of length p*size(y,'*'). Default is p = 0.1. // Example: // t = linspace(-%pi,%pi,500); // clf();comet3d(sin(5*t),sin(t),t^2) // // function z=traj(x,y),z=1.5*sin(x^2)*cos(y),endfunction // clf();comet3d(cos(t),sin(t),traj) // nv=size(varargin) if nv>=3&varargin(nv-1)=="colors" then c=round(varargin(nv)) if type(c)<>1|~isreal(c) then error(msprintf(_("%s: Wrong type for argument #%d: Real vector expected.\n"),"comet3d",nv)) end varargin=list(varargin(1:$-2)) else c=[] end select size(varargin) case 1 then //z z=varargin(1) if or(size(z)==1) then x=1:size(z,"*") else x=1:size(z,1) end y=x p=0.1 case 3 then //x,y,z [x,y,z]=varargin(1:3) p=0.1 case 4 then //x,y,z,p [x,y,z,p]=varargin(1:4) else error(msprintf(_("%s: Wrong number of input arguments: %d or %d to %d expected.\n"),"comet3d",1,3,4)) end if type(x)<>1|~isreal(x) then error(msprintf(_("%s: Wrong type for argument #%d: Real vector expected.\n"),"comet3d",1)) end if type(y)<>1|~isreal(x) then error(msprintf(_("%s: Wrong type for argument #%d: Real vector expected.\n"),"comet3d",1)) end if (type(z)<>1|~isreal(z))&and(type(z)<>[11 13]) then error(msprintf(_("%s: Wrong type for argument #%d: Real vector expected.\n"),"comet3d",3)) end if or(type(z)==[11 13]) then x=x(:);y=y(:) n=size(x,"*") m=1 if n<>size(y,"*") then error(msprintf(_("%s: Incompatible input arguments #%d and #%d: Same sizes expected.\n"),"comet3d",1,2)) end prot=funcprot();funcprot(0) zz=z; z=zeros(n,1); for i=1:n z(i)=zz(x(i),y(i)) end funcprot(prot) else if or(size(z)==1) then m=1 z=z(:) n=size(z,"*") else [n,m]=size(z) end if or(size(x)==1) then x=x(:) if size(x,"*")<>n then error(msprintf(_("%s: Wrong size for argument #%d: %d expected.\n"),"comet3d",1,n)) end x=x*ones(1,m) else if or(size(x)<>size(z)) then error(msprintf(_("%s: Incompatible input arguments #%d and #%d: Same sizes expected.\n"),"comet3d",1,3)) end end if or(size(y)==1) then y=y(:) if size(y,"*")<>n then error(msprintf(_("%s: Wrong size for argument #%d: %d expected.\n"),"comet3d",2,n)) end y=y*ones(1,m) else if or(size(y)<>size(z)) then error(msprintf(_("%s: Incompatible input arguments #%d and #%d: Same sizes expected.\n"),"comet3d",2,3)) end end end if type(p)<>1|~isreal(p)|size(p,"*")>1 then error(msprintf(_("%s: Wrong type for argument #%d: Real scalar expected.\n"),"comet3d",3)) end if p<0|p>=1 then error(msprintf(_("%s: Wrong value for input argument #%d: Must be in the interval %s.\n"),"comet3d",3,"[0 1[")) end fig=gcf(); if c==[] then c=1:m else if size(c,"*")<>m then error(msprintf(_("%s: Wrong size for argument #%d: %d expected.\n"),"comet",nv,m)) end if min(c)<1|max(c)>size(fig.color_map,1) then error(msprintf(_( "%s: Wrong value for input argument #%d: Must be in the set {%s}.\n"),"comet",nv,"1,...,"+string(size(fig.color_map,1)))) end end axes=gca(); axes.view="3d" if axes.children==[] then axes.data_bounds=[min(x) min(y) min(z);max(x) max(y) max(z)]; axes.axes_visible="on"; axes.box="on"; else axes.data_bounds=[min(axes.data_bounds(1,:), [min(x) min(y) min(z)]); max(axes.data_bounds(2,:), [max(x) max(y) max(z)])]; end //create the head, body and tail polylines drawlater() for l=1:m xpoly([],[]);tail(l)=gce(); tail(l).foreground=c(l); xpoly([],[]);body(l)=gce(); body(l).foreground=c(l); body(l).thickness=2; xpoly([],[],"marks");head(l)=gce(); head(l).mark_size_unit="point"; head(l).mark_size=6; head(l).mark_style=9; head(l).mark_foreground=c(l); end show_window(); function anim() //animation loop axes=gca(); k = round(p*n); step=ceil(n/200); //used to speed up the drawing for i=1:n for l=1:m head(l).data=[x(i,l),y(i,l),z(i,l)]; sleep(35);// Ajout MPH pour contrôler le temps de vol de la balle ////////////////////////////////////////////// if i<=k then body(l).data= [body(l).data;[x(i,l),y(i,l),z(i,l)]]; else body(l).data= [body(l).data(2:$,:);[x(i,l),y(i,l),z(i,l)]]; tail(l).data=[ tail(l).data;[x(i-k,l),y(i-k,l),z(i-k,l)]]; end end if modulo(i,step)==0 then //axes.data_bounds = [x(i,l)-10 -20 0 ; x(i,l)+250 20 y(i,l)+30]; //axes.data_bounds = [x(i,l)-10 -40 0 ; x(i,l)+250 40 z(i,l)+5]; fig.immediate_drawing = "on"; fig.immediate_drawing = "off"; end end; drawnow();drawlater(); for i=n:n+k for l=1:m body(l).data= body(l).data(2:$,:); tail(l).data=[ tail(l).data;[x(i-k,l),y(i-k,l),z(i-k,l)]]; end if modulo(i,step)==0 then fig.immediate_drawing = "on" fig.immediate_drawing = "off" end end delete(body) drawnow(); endfunction //not to generate an error message if the window is closed exec(anim,"errcatch",-1); //exec(anim,-1) endfunction
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Ex3_5.sce
//Variable declaration: SG = 0.92 //Specific gavity of liquid, methanol DW = 62.4 //Density of reference substance, water (lb/ft^3) //Calculation: DM = SG*DW //Density of methanol (lb/ft^3) //Result: disp("Density of methanol is:") disp(DM) disp("lb/ft^3")
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Ex13_6.sce
//===================================================================================== //Chapter 13 example 6 clc;clear all; //variable declaration Rc = 1; //resistance in Ω N = 5; //multiplying factor //calculations //N = (Rs+Rc)/Rs Rs = Rc/(N-1); //shunt resistance in Ω //result mprintf("shunt resistance = %3.2f Ω",Rs);
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ch7_8.sce
//Calculate the control limits for the p-chart using 3σ limits //page no 151 clear clc; ds=127; ns=1547; P1=ds/ns; n=188; //Control limits for p-chart mprintf("\P1 = %.4f \n",P1); UCL=P1+3*sqrt((P1*(1-P1))/n); mprintf("\UCL = %.2f \n",UCL); LCL=P1-3*sqrt((P1*(1-P1))/n); mprintf("\LCL = %.2f \n",LCL); CL=P1; mprintf("\CL = %.2f \n",CL);
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example14_sce.sce
//chapter 13 //example 13.14 //page 580 printf("\n") printf("given") hfe=100;hie=2*10^3;R4=100;R1=5.6*10^3;R6=2.2*10^3; Zi=hie+(1+hfe)*R4 disp("open loop current gain") Ai=(hfe*hfe*R1)/(R1+Zi) B=R4/(R4+R6) disp("closed loop gain") Acl=Ai/(1+Ai*B) Zi=hie/(1+Ai*B)