GeneCAD
Collection
GeneCAD models • 6 items • Updated
Dataset Viewer
The dataset could not be loaded because the splits use different data file formats, which is not supported. Read more about the splits configuration. Click for more details.
Couldn't infer the same data file format for all splits. Got {NamedSplit('train'): (None, {}), NamedSplit('test'): ('text', {})}
Error code: FileFormatMismatchBetweenSplitsError
Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
GeneCAD Development Data
This dataset contains FASTA genome sequence files and GFF/GFF3 annotation files used for GeneCAD development, plus GeneCAD prediction outputs.
Contents
data/plant/: plant FASTA and GFF files for training, full-genome evaluation inputs, and examples.data/animal/: animal FASTA and GFF files for training and evaluation.data/plant/fasta/evaluation_full/anddata/plant/gff/evaluation_full/: full-genome plant FASTA/GFF inputs corresponding to the plant prediction outputs.predictions/prediction_genecad_emarro_5species/: GeneCAD prediction FASTA/GFF outputs from the 5-species run.predictions/prediction_genecad_emarro_10species/Arabidopsis/: Arabidopsis prediction GFF outputs from the 10-species run.prediction_files.csv: an index of the added prediction FASTA/GFF files with species, region, size, and repository path.
Only FASTA and GFF-style files are included for the prediction results. Pipeline intermediates, BUSCO evaluation outputs, checkpoints, Zarr arrays, BigWig tracks, logs, and other generated artifacts are intentionally excluded.
- Downloads last month
- 134