Commit ·
df74284
1
Parent(s): a373783
Add GeneCAD multi-species training data (5 species)
Browse files- .gitattributes +5 -0
- data/fasta/training/Athaliana_447_TAIR10.fa +3 -0
- data/fasta/training/Gmax_880_v6.0.fa +3 -0
- data/fasta/training/Hvulgare_462_r1.fa.gz +3 -0
- data/fasta/training/Osativa_323_v7.0.fa +3 -0
- data/fasta/training/Ptrichocarpa_533_v4.0.fa.gz +3 -0
- data/gff/Coffea_arabica_geisha.annotation_chr1.gff3 +0 -0
- data/gff/Juglans_regia.Walnut_2.0.60_chr1.gff3 +0 -0
- data/gff/training/Athaliana_top_transcript.gff3 +3 -0
- data/gff/training/Gmax_top_transcript.gff3 +3 -0
- data/gff/training/Hvulgare_top_transcript.gff3 +3 -0
- data/gff/training/Osativa_top_transcript.gff3 +3 -0
- data/gff/training/Ptrichocarpa_top_transcript.gff3 +3 -0
.gitattributes
CHANGED
|
@@ -69,3 +69,8 @@ data/fasta/Juglans_regia.Walnut_2.0.dna.toplevel_chr1.fa filter=lfs diff=lfs mer
|
|
| 69 |
data/fasta/Phaseolus_vulgaris-2.0.2_chr1.fasta filter=lfs diff=lfs merge=lfs -text
|
| 70 |
data/fasta/Sviridis_726_v4.0.fa filter=lfs diff=lfs merge=lfs -text
|
| 71 |
data/fasta/GCA_978657495.1_TAIR12_genomic_5.fna filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 69 |
data/fasta/Phaseolus_vulgaris-2.0.2_chr1.fasta filter=lfs diff=lfs merge=lfs -text
|
| 70 |
data/fasta/Sviridis_726_v4.0.fa filter=lfs diff=lfs merge=lfs -text
|
| 71 |
data/fasta/GCA_978657495.1_TAIR12_genomic_5.fna filter=lfs diff=lfs merge=lfs -text
|
| 72 |
+
*.fa.gz filter=lfs diff=lfs merge=lfs -text
|
| 73 |
+
*.fna filter=lfs diff=lfs merge=lfs -text
|
| 74 |
+
*.fna.gz filter=lfs diff=lfs merge=lfs -text
|
| 75 |
+
*.gff3 filter=lfs diff=lfs merge=lfs -text
|
| 76 |
+
*.fa filter=lfs diff=lfs merge=lfs -text
|
data/fasta/training/Athaliana_447_TAIR10.fa
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3da327222640709882fb2d4faaed120fbbe7394aa35090a2f8149cb4e230cd0c
|
| 3 |
+
size 121183067
|
data/fasta/training/Gmax_880_v6.0.fa
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fdc8c5db423929d9a959505284c21d82e9834ee90679636a786c26d13525ee2b
|
| 3 |
+
size 1023768017
|
data/fasta/training/Hvulgare_462_r1.fa.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1a9f07cebb9740b0b1734807dd2f7da252292ce64c1de7e9ad735ac677f66d80
|
| 3 |
+
size 1399718743
|
data/fasta/training/Osativa_323_v7.0.fa
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:db8b7efb4df6ae33195143f3444b8816917441e1b964d150663ceeb2249506c4
|
| 3 |
+
size 381956675
|
data/fasta/training/Ptrichocarpa_533_v4.0.fa.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0cafbefdbbcfe8db9486c699ecedfefab7f39dca9a7e19f007a950e279d18a4e
|
| 3 |
+
size 116064582
|
data/gff/Coffea_arabica_geisha.annotation_chr1.gff3
CHANGED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/gff/Juglans_regia.Walnut_2.0.60_chr1.gff3
CHANGED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/gff/training/Athaliana_top_transcript.gff3
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:466957cb0720eedceca3783686eec0d142975669cbffe8b5ad43507174db4195
|
| 3 |
+
size 52743675
|
data/gff/training/Gmax_top_transcript.gff3
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:53bf2c165fc9a4efd4b9d8f1b9618fec928f190e0bfeac8192f29c2ddb609042
|
| 3 |
+
size 104985390
|
data/gff/training/Hvulgare_top_transcript.gff3
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a36d43e6aab7f453c87bb6b4a5138ab4f3cfa96dc627bd9a9506fd47fa849845
|
| 3 |
+
size 60586679
|
data/gff/training/Osativa_top_transcript.gff3
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:065297984279d5bc89105b108612837d98a22c96ff006f0f30d3bc0ca7612810
|
| 3 |
+
size 39201573
|
data/gff/training/Ptrichocarpa_top_transcript.gff3
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:80f052a23c550adcb9ce94349a311f7339bdfc2530e9a17179af2ba2e2aa3e29
|
| 3 |
+
size 68287598
|