Datasets:

---

powidla

/

MetabGame

like 0

Error code:   DatasetGenerationError
Exception:    CastError
Message:      Couldn't cast
name: string
mode: string
contents: struct<12dgr180: int64, 12dhchol: int64, 12ppd_S: int64, 13ppd: int64, 15dap: int64, 26dap_M: int64, (... 6042 chars omitted)
  child 0, 12dgr180: int64
  child 1, 12dhchol: int64
  child 2, 12ppd_S: int64
  child 3, 13ppd: int64
  child 4, 15dap: int64
  child 5, 26dap_M: int64
  child 6, 2ddglcn: int64
  child 7, 2dmmq8: int64
  child 8, 2hyoxplac: int64
  child 9, 2mbut: int64
  child 10, 2obut: int64
  child 11, 2omfuc: int64
  child 12, 2omxyl: int64
  child 13, 34dhpha: int64
  child 14, 34dhphe: int64
  child 15, 3ddlhept: int64
  child 16, 3dhcdchol: int64
  child 17, 3dhchol: int64
  child 18, 3hcinnm: int64
  child 19, 3hphac: int64
  child 20, 3hpppn: int64
  child 21, 3mop: int64
  child 22, 4abut: int64
  child 23, 4abz: int64
  child 24, 4hbz: int64
  child 25, 4hoxpacd: int64
  child 26, 4hphac: int64
  child 27, 4hpro_LT: int64
  child 28, 4mcat: int64
  child 29, 5aptn: int64
  child 30, 5htrp: int64
  child 31, 5mta: int64
  child 32, 5mthf: int64
  child 33, 7dhcdchol: int64
  child 34, 7ocholate: int64
  child 35, C02528: int64
  child 36, Cit_Mg: int64
  child 37, HC00319: int64
  child 38, HC02191: int64
  child 39, HC02194: int64
  child 40, Lcyst: int64
  child 41, Lcystin: int64
  child 42, Lkynr: int64
  child 43, M03134: int64
  child 44, Ser_Thr: int64
  child 45, T_antigen: int64
  child 46, Tn_antigen: int64
  child 47, Tyr_ggn: int64
  child 48, ac: int64
  child 49, acac: int64
  child 50, acald: int64
  chil
...
nt64
  child 375, sTn_antigen: int64
  child 376, salcn: int64
  child 377, sbt_D: int64
  child 378, sbt_L: int64
  child 379, sel: int64
  child 380, selni: int64
  child 381, ser_D: int64
  child 382, ser_L: int64
  child 383, sheme: int64
  child 384, so3: int64
  child 385, so4: int64
  child 386, spmd: int64
  child 387, srtn: int64
  child 388, starch1200: int64
  child 389, strch1: int64
  child 390, strch2: int64
  child 391, stys: int64
  child 392, succ: int64
  child 393, sucr: int64
  child 394, sulfac: int64
  child 395, taur: int64
  child 396, tchola: int64
  child 397, tdchola: int64
  child 398, tet: int64
  child 399, thf: int64
  child 400, thm: int64
  child 401, thmmp: int64
  child 402, thr_L: int64
  child 403, thymd: int64
  child 404, tma: int64
  child 405, tmao: int64
  child 406, tre: int64
  child 407, trp_L: int64
  child 408, trypta: int64
  child 409, tsul: int64
  child 410, ttdca: int64
  child 411, tym: int64
  child 412, tyr_L: int64
  child 413, uchol: int64
  child 414, ura: int64
  child 415, urea: int64
  child 416, uri: int64
  child 417, val_L: int64
  child 418, xan: int64
  child 419, xtsn: int64
  child 420, xyl_D: int64
  child 421, xylan: int64
  child 422, xyluglc: int64
  child 423, zn2: int64
essential_compounds: list<item: string>
  child 0, item: string
N_R: int64
taxonomy: struct<k: int64, tax_distance: list<item: string>>
  child 0, k: int64
  child 1, tax_distance: list<item: string>
      child 0, item: string
id: int64
to
{'id': Value('int64'), 'name': Value('string'), 'N_R': Value('int64'), 'taxonomy': {'k': Value('int64'), 'tax_distance': List(Value('string'))}, 'essential_compounds': List(Value('string'))}
because column names don't match
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1779, in _prepare_split_single
                  for key, table in generator:
                                    ^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 609, in wrapped
                  for item in generator(*args, **kwargs):
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 295, in _generate_tables
                  self._cast_table(pa_table, json_field_paths=json_field_paths),
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 128, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              name: string
              mode: string
              contents: struct<12dgr180: int64, 12dhchol: int64, 12ppd_S: int64, 13ppd: int64, 15dap: int64, 26dap_M: int64, (... 6042 chars omitted)
                child 0, 12dgr180: int64
                child 1, 12dhchol: int64
                child 2, 12ppd_S: int64
                child 3, 13ppd: int64
                child 4, 15dap: int64
                child 5, 26dap_M: int64
                child 6, 2ddglcn: int64
                child 7, 2dmmq8: int64
                child 8, 2hyoxplac: int64
                child 9, 2mbut: int64
                child 10, 2obut: int64
                child 11, 2omfuc: int64
                child 12, 2omxyl: int64
                child 13, 34dhpha: int64
                child 14, 34dhphe: int64
                child 15, 3ddlhept: int64
                child 16, 3dhcdchol: int64
                child 17, 3dhchol: int64
                child 18, 3hcinnm: int64
                child 19, 3hphac: int64
                child 20, 3hpppn: int64
                child 21, 3mop: int64
                child 22, 4abut: int64
                child 23, 4abz: int64
                child 24, 4hbz: int64
                child 25, 4hoxpacd: int64
                child 26, 4hphac: int64
                child 27, 4hpro_LT: int64
                child 28, 4mcat: int64
                child 29, 5aptn: int64
                child 30, 5htrp: int64
                child 31, 5mta: int64
                child 32, 5mthf: int64
                child 33, 7dhcdchol: int64
                child 34, 7ocholate: int64
                child 35, C02528: int64
                child 36, Cit_Mg: int64
                child 37, HC00319: int64
                child 38, HC02191: int64
                child 39, HC02194: int64
                child 40, Lcyst: int64
                child 41, Lcystin: int64
                child 42, Lkynr: int64
                child 43, M03134: int64
                child 44, Ser_Thr: int64
                child 45, T_antigen: int64
                child 46, Tn_antigen: int64
                child 47, Tyr_ggn: int64
                child 48, ac: int64
                child 49, acac: int64
                child 50, acald: int64
                chil
              ...
              nt64
                child 375, sTn_antigen: int64
                child 376, salcn: int64
                child 377, sbt_D: int64
                child 378, sbt_L: int64
                child 379, sel: int64
                child 380, selni: int64
                child 381, ser_D: int64
                child 382, ser_L: int64
                child 383, sheme: int64
                child 384, so3: int64
                child 385, so4: int64
                child 386, spmd: int64
                child 387, srtn: int64
                child 388, starch1200: int64
                child 389, strch1: int64
                child 390, strch2: int64
                child 391, stys: int64
                child 392, succ: int64
                child 393, sucr: int64
                child 394, sulfac: int64
                child 395, taur: int64
                child 396, tchola: int64
                child 397, tdchola: int64
                child 398, tet: int64
                child 399, thf: int64
                child 400, thm: int64
                child 401, thmmp: int64
                child 402, thr_L: int64
                child 403, thymd: int64
                child 404, tma: int64
                child 405, tmao: int64
                child 406, tre: int64
                child 407, trp_L: int64
                child 408, trypta: int64
                child 409, tsul: int64
                child 410, ttdca: int64
                child 411, tym: int64
                child 412, tyr_L: int64
                child 413, uchol: int64
                child 414, ura: int64
                child 415, urea: int64
                child 416, uri: int64
                child 417, val_L: int64
                child 418, xan: int64
                child 419, xtsn: int64
                child 420, xyl_D: int64
                child 421, xylan: int64
                child 422, xyluglc: int64
                child 423, zn2: int64
              essential_compounds: list<item: string>
                child 0, item: string
              N_R: int64
              taxonomy: struct<k: int64, tax_distance: list<item: string>>
                child 0, k: int64
                child 1, tax_distance: list<item: string>
                    child 0, item: string
              id: int64
              to
              {'id': Value('int64'), 'name': Value('string'), 'N_R': Value('int64'), 'taxonomy': {'k': Value('int64'), 'tax_distance': List(Value('string'))}, 'essential_compounds': List(Value('string'))}
              because column names don't match
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1832, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset