Plankton images datasets
Collection
12 items
•
Updated
Datasets:
Dataset Card for JEDI System/OCEANS_CPICS
Plankton image dataset from a cabled observatory system (JEDI System/OCEANS) deployed at coastal area of Oshima island, Tokyo, Japan. To understand multiscale process of planktonic ecosystem in the Kuroshio, a cabled observatory system (JEDI-System/OCEANS) was developed and deployed at a coastal area (20 m depth) of Oshima Island, Tokyo, Japan, during 2014 to 2016 (Yamazaki et al., 2016). The observatory system can measure environmental parameters such as temperature and salinity, and take microscopic plankton images continuously. In this dataset, planktonic images obtained by the system were identified using machine learning with the validation process and compiled into DarwinCore occurrence records. All biological images and measured environmental parameters were archived at JST NBDC (https://dbarchive.biosciencedbc.jp/en/jedisystem-oceansdb/desc.html).
- Original dataset available online at: https://dbarchive.biosciencedbc.jp/data/jedisystem-oceansdb/LATEST/README_e.html#Sec3.
- Original dataset license: <cc-by-sa-4.0>.
Details
trainsplit means (RGB): [0.9505101071748118, 0.9504884138204985, 0.9505175190708688]trainsplit standard deviations (RGB): [0.09195454401768596, 0.09189894309941285, 0.09182147539501287]
Samples per class for split train
0: LClass_26.Chaetognatha 646.00
1: LClass_27.Hydrozoa 74.00
2: LClass_28.Larvacea 102.00
3: LClass_29.Polychaeta 5002.00
4: LClass_30.Benthic_algae 1714.00
5: LClass_30.Bentic_algae 159.00
6: LClass_31.Polyp 143.00
7: LClass_32.1Adult_Fish 6924.00
8: LClass_33.Air_bubble 3937.00
9: LClass_Ba.22.Cypris_larva 2116.00
10: LClass_Ba.Barnacle_nauplius 5.00
11: LClass_Barnacle_exuviae 211.00
12: LClass_Benthic_algae 623.00
13: LClass_Bivalvia 3.00
14: LClass_CC.Copepod ▇▇▇▇ 102482.00
15: LClass_Chaetognatha 1124.00
16: LClass_Cr.16.Decapoda 580.00
17: LClass_Cr.Crustacea ▇▇ 45383.00
18: LClass_Crinoidea 66.00
19: LClass_Crust.+Decap 4414.00
20: LClass_Cy.1.Trichodesmium 753.00
21: LClass_Cy.1.Trichodesmium_spp 36.00
22: LClass_Cy.1.Trichodesmium_tuft 20.00
23: LClass_Cy.2.Trichodesmium 152.00
24: LClass_Cy.Trichodesmium_ 40.00
25: LClass_Detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 746055.00
26: LClass_Detritus_dot 1302.00
27: LClass_Detritus_stickers 2483.00
28: LClass_Df.02.Ceratium 482.00
29: LClass_Df.03.Noctiluca_scintillans 4827.00
30: LClass_Di.Diatom ▇▇ 60007.00
31: LClass_Dinoflagellate 28.00
32: LClass_Doubts 845.00
33: LClass_Doutbs 581.00
34: LClass_Fish_larvae 1.00
35: LClass_Foraminiferida 46.00
36: LClass_Halacaridae 26.00
37: LClass_Larvacea 110.00
38: LClass_Mollusca 5.00
39: LClass_Multiple_organisms 214.00
40: LClass_Noctiluca_eggs 140.00
41: LClass_Organism_parts_general ▇▇▇▇▇▇▇ 178101.00
42: LClass_Pa.35.Marine_snow 2.00
43: LClass_Pa.35.Marine_snow_aggregate_large 13299.00
44: LClass_Pa.35.Marine_snow_aggregate_medium ▇▇▇▇▇▇▇▇ 203211.00
45: LClass_Pa.35.Marine_snow_aggregate_small ▇ 26930.00
46: LClass_Pa.35.Marine_snow_com_large ▇ 13604.00
47: LClass_Pa.35.Marine_snow_com_medium ▇▇ 63559.00
48: LClass_Pa.35.Marine_snow_com_small ▇▇▇▇▇▇▇▇▇▇▇▇ 316204.00
49: LClass_Pa.35.Marine_snow_stick 132.00
50: LClass_Pa.36.Fecal_pellets 1668.00
51: LClass_Pa.36.Fecal_pellets_New ▇ 31982.00
52: LClass_Pa.37.Barnacle_exuviae 86.00
53: LClass_Pa.39.Mineral 7570.00
54: LClass_Pa.Mineral 6094.00
55: LClass_Pa.Other_exuviae 520.00
56: LClass_Pluteos 20.00
57: LClass_Polyp 254.00
58: LClass_Pteropod 96.00
59: LClass_Ra.25.Radiolaria 2416.00
60: LClass_Ra.25.Radiolaria_2 337.00
61: LClass_Ra.Radiolaria 449.00
62: LClass_Rhizaria_others 232.00
63: LClass_Tintinnida 42.00
64: LClass_Unfocussed ▇ 39745.00
65: LClass_Unkown 65.00
66: LClass_appendicularia 16.00
67: LClass_barnacle 82.00
68: LClass_bentic_algae 221.00
69: LClass_carapace 343.00
70: LClass_chaetognata 74.00
71: LClass_cilliate 37.00
72: LClass_cnidaria 218.00
73: LClass_crus_doubt 117.00
74: LClass_dinoflagelate 255.00
75: LClass_doubt 984.00
76: LClass_egg 61.00
77: LClass_eggs 308.00
78: LClass_enteropneusta_larvae 1.00
79: LClass_fish_lavae 16.00
80: LClass_foraminifera 206.00
81: LClass_gastropoda 271.00
82: LClass_hydracarina 15.00
83: LClass_hydracarina_ 1.00
84: LClass_multiple 42.00
85: LClass_organism_border 71.00
86: LClass_partCrustaceo 49.00
87: LClass_pluteus 11.00
88: LClass_pluteus_larvae 3.00
89: LClass_rhizaria_other 34.00
90: LClass_salps 6.00
91: LClass_shell 11.00
92: LClass_siphonophora 2.00
93: LClass_unknown 118.00
94: LRaw 12113.00
Reference
Yamasaki, H. (2022). Plankton image dataset from a cabled observatory system (JEDI System/OCEANS) deployed at coastal area of Oshima Island, Tokyo, Japan. JAMSTEC. https://doi.org/10.48518/00014
BibTEX
@misc{dataset:jedioceans,
doi = {10.48518/00014},
url = {https://www.godac.jamstec.go.jp/bismal/e/dataset/TUMSAT_JEDI-OCEANS},
author = {Yamasaki, Hidekatsu},
title = {Plankton image dataset from a cabled observatory system ({JEDI System/OCEANS})
deployed at coastal area of {O}shima {I}sland, {T}okyo, {J}apan},
publisher = {JAMSTEC},
year = {2022}
}
Usage
from datasets import load_dataset
dataset = load_dataset("project-oceania/jedi_system_oceans_cpics")
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