Datasets:
metadata
license: cc-by-nc-4.0
task_categories:
- image-classification
paperswithcode_id: zoocamnet
pretty_name: 'ZooCAMNet: plankton images captured with the ZooCAM'
dataset_info:
features:
- name: image
dtype: image
- name: label
dtype:
class_label:
names:
'0': Acartiidae
'1': Actinopterygii
'2': Amphipoda
'3': Annelida
'4': Appendicularia
'5': Bivalvia
'6': Calanidae
'7': Calanoida
'8': Calocalanus
'9': Candaciidae
'10': Cavoliniidae
'11': Centropagidae
'12': Chaetognatha
'13': Ciripedia
'14': Cladocera
'15': Cnidaria
'16': Copepoda
'17': Corycaeidae
'18': Ctenophora
'19': Cyclopoida
'20': Decapoda
'21': Diatoma
'22': Diatoma tenuis
'23': Doliolida
'24': Euchaeta
'25': Euterpina
'26': Evadne
'27': Gastropoda
'28': Halosphaera
'29': Harpacticoida
'30': Hydrozoa
'31': Isias
'32': Limacinidae
'33': Luidiidae
'34': Metrinidae
'35': Microstella
'36': Nannosquillidae
'37': Neoceratium
'38': Noctiluca
'39': Obelia
'40': Oncaea
'41': Penilia
'42': Phoronida
'43': Physonectae
'44': Podon
'45': Poecilostomatoida
'46': Pontellidae
'47': Porcellanidae
'48': Rhizaria
'49': Rhizosolenids
'50': Temoridae
'51': Thalassionema
'52': Thaliacea
'53': Trichodesmium
'54': artefact
'55': bract_Diphyidae
'56': bubble
'57': chainlarge
'58': comb_Ctenophora
'59': cyphonaute
'60': detritus
'61': egg_Actinopterygii
'62': egg_Engraudilae
'63': egg_Mollusca
'64': egg_Sardina
'65': egg_other
'66': empty_Copepoda
'67': empty_Harpacticoida
'68': eudoxie_Diphyidae
'69': feces
'70': fiber_detritus
'71': fiber_plastic
'72': gelatinous
'73': gonophore_Diphyidae
'74': larvae_Annelida
'75': larvae_Crustacea
'76': larvae_Echinodermata
'77': light_detritus
'78': medium_detritus
'79': megalopa
'80': multiple_Copepoda
'81': nauplii_Crustacea
'82': nectophore_Diphyidae
'83': other_Crustacea
'84': other_Siphonophorae
'85': other_living
'86': other_plastic
'87': part_Crustacea
'88': pluteus_Echinodermata
'89': shrimp_like
'90': tail_Appendicularia
'91': veliger
'92': zoea_brachyura
splits:
- name: train
num_bytes: 4556538562.17
num_examples: 1286590
download_size: 3043699980
dataset_size: 4556538562.17
description: >
Plankton was sampled with a Continuous Underway Fish Egg Sampler (CUFES,
315µm mesh size) at 4 m below the
surface, and a WP2 net (200µm mesh size) from 100m to the surface, or 5 m
above the sea floor to the surface
when the depth was < 100 m, in the Bay of Biscay. The full images were
processed with the ZooCAM software
and the embedded Matrox Imaging Library (Colas et a., 2018) which generated
regions of interest (ROIs) around
each individual object and a set of features measured on the object. The
same objects were re-processed to
compute features with the scikit-image library http://scikit-image.org. The
1,286,590 resulting objects were
sorted by a limited number of operators, following a common taxonomic guide,
into 93 taxa, using the web
application EcoTaxa http://ecotaxa.obs-vlfr.fr. For the purpose of training
machine learning classifiers, the
images in each class were split into training, validation, and test sets,
with proportions 70%, 15% and 15%.
dataset_name: 'ZooCAMNet: plankton images captured with the ZooCAM'
citation: |
@article{dataset:zoocamnet,
title = {ZooCAMNet: plankton images captured with the ZooCAM},
author = {Romagnan, Jean-Baptiste and Panaïotis, Thelma and Bourriau, Paul
and Danielou, Marie-Madeleine and Doray, Mathieu and Dupuy, Christine
and Forest, Bertrand and Grandremy, Nina and Huret, Martin and Le Mestre, Sophie
and Nowaczyk, Antoine and Petitgas, Pierre and Pineau, Philippe and Rouxel, Justin
and Tardivel, Morgan and Irisson, Jean-Olivier},
year = 2024,
journal = {SEANOE},
doi = {10.17882/101928},
affiliation = {DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Nantes, Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03, France. E-mail address: nina.grandremy@ifremer.fr.
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefanche, LOV, 06230 Villefranche-sur-mer, France.
Unité DYNECO-PELAGOS, Laboratoire d'Ecologie Pélagique, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
BIOFEEL, UMRi LIENSs, La Rochelle Université / CNRS, 2, rue Olympe de Gouges, 17000 La Rochelle, France.
Laboratoire Hydrodynamique Marine, Unité RDT, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
UMR CNRS 5805 EPOC-OASU, Station Marine d'Arcachon, Université de Bordeaux, 2 Rue du Professeur Jolyet, 33120 Arcachon, France.
Departement Ressources Biologiques et Environnement, Ifremer Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03, France.
Laboratoire Détection, Capteurs et Mesures, Unité RDT, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.}
}
homepage: https://www.seanoe.org/data/00907/101928/
configs:
- config_name: default
data_files:
- split: train
path: data/train-*
dataset_description: >
Plankton was sampled with a Continuous Underway Fish Egg Sampler (CUFES, 315µm
mesh size) at 4 m below the
surface, and a WP2 net (200µm mesh size) from 100m to the surface, or 5 m
above the sea floor to the surface
when the depth was < 100 m, in the Bay of Biscay. The full images were
processed with the ZooCAM software
and the embedded Matrox Imaging Library (Colas et a., 2018) which generated
regions of interest (ROIs) around
each individual object and a set of features measured on the object. The same
objects were re-processed to
compute features with the scikit-image library http://scikit-image.org. The
1,286,590 resulting objects were
sorted by a limited number of operators, following a common taxonomic guide,
into 93 taxa, using the web
application EcoTaxa http://ecotaxa.obs-vlfr.fr. For the purpose of training
machine learning classifiers, the
images in each class were split into training, validation, and test sets, with
proportions 70%, 15% and 15%.
source_url: https://www.seanoe.org/data/00907/101928/
citation_bibtex: |
@article{dataset:zoocamnet,
title = {ZooCAMNet: plankton images captured with the ZooCAM},
author = {Romagnan, Jean-Baptiste and Panaïotis, Thelma and Bourriau, Paul
and Danielou, Marie-Madeleine and Doray, Mathieu and Dupuy, Christine
and Forest, Bertrand and Grandremy, Nina and Huret, Martin and Le Mestre, Sophie
and Nowaczyk, Antoine and Petitgas, Pierre and Pineau, Philippe and Rouxel, Justin
and Tardivel, Morgan and Irisson, Jean-Olivier},
year = 2024,
journal = {SEANOE},
doi = {10.17882/101928},
affiliation = {DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Nantes, Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03, France. E-mail address: nina.grandremy@ifremer.fr.
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefanche, LOV, 06230 Villefranche-sur-mer, France.
Unité DYNECO-PELAGOS, Laboratoire d'Ecologie Pélagique, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
BIOFEEL, UMRi LIENSs, La Rochelle Université / CNRS, 2, rue Olympe de Gouges, 17000 La Rochelle, France.
Laboratoire Hydrodynamique Marine, Unité RDT, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
UMR CNRS 5805 EPOC-OASU, Station Marine d'Arcachon, Université de Bordeaux, 2 Rue du Professeur Jolyet, 33120 Arcachon, France.
Departement Ressources Biologiques et Environnement, Ifremer Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03, France.
Laboratoire Détection, Capteurs et Mesures, Unité RDT, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.}
}
citation_apa: >
Romagnan, J.-B., Panaïotis, T., Bourriau, P., Danielou, M.-M., Doray, M.,
Dupuy, C., Forest, B., Grandremy, N.,
Huret, M., Le Mestre, S., Nowaczyk, A., Petitgas, P., Pineau, P., Rouxel, J.,
Tardivel, M., & Irisson, J.-O. (2024).
ZooCAMNet: plankton images captured with the ZooCAM. SEANOE.
https://doi.org/10.17882/101928
hf_dataset_name: zoocamnet
hf_org_name: project-oceania
report_markdown: >
**Samples per class for split `train`**
```──────────────────────── Label histogram for train split ─────────────────────────
0: Acartiidae ▇▇▇▇▇▇▇▇ 33912.00
1: Actinopterygii 100.00
2: Amphipoda 304.00
3: Annelida 390.00
4: Appendicularia ▇▇▇ 13086.00
5: Bivalvia ▇ 2482.00
6: Calanidae ▇▇▇ 11921.00
7: Calanoida ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇
197751.00
8: Calocalanus 1054.00
9: Candaciidae 171.00
10: Cavoliniidae 365.00
11: Centropagidae ▇ 6203.00
12: Chaetognatha ▇ 3150.00
13: Ciripedia ▇▇ 8287.00
14: Cladocera ▇▇ 6669.00
15: Cnidaria 156.00
16: Copepoda ▇▇▇▇ 18557.00
17: Corycaeidae ▇ 3659.00
18: Ctenophora 116.00
19: Cyclopoida ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 139175.00
20: Decapoda 480.00
21: Diatoma ▇▇▇▇▇▇▇▇▇ 38247.00
22: Diatoma tenuis ▇ 4515.00
23: Doliolida 91.00
24: Euchaeta ▇ 4548.00
25: Euterpina 1449.00
26: Evadne 2014.00
27: Gastropoda 119.00
28: Halosphaera 508.00
29: Harpacticoida 645.00
30: Hydrozoa ▇ 2484.00
31: Isias 281.00
32: Limacinidae ▇▇ 10223.00
33: Luidiidae 110.00
34: Metrinidae ▇ 2499.00
35: Microstella 318.00
36: Nannosquillidae 81.00
37: Neoceratium ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 97680.00
38: Noctiluca ▇▇▇ 14269.00
39: Obelia 549.00
40: Oncaea ▇▇▇▇▇ 23336.00
41: Penilia 398.00
42: Phoronida 94.00
43: Physonectae 175.00
44: Podon 188.00
45: Poecilostomatoida 692.00
46: Pontellidae 239.00
47: Porcellanidae 884.00
48: Rhizaria ▇▇▇▇▇▇▇ 28835.00
49: Rhizosolenids ▇▇▇▇▇▇ 24178.00
50: Temoridae ▇▇▇ 14638.00
51: Thalassionema 279.00
52: Thaliacea 501.00
53: Trichodesmium ▇ 5319.00
54: artefact ▇▇▇ 13522.00
55: bract_Diphyidae 1845.00
56: bubble ▇▇▇▇▇▇▇▇▇▇▇▇▇ 53723.00
57: chainlarge ▇▇▇ 14375.00
58: comb_Ctenophora 270.00
59: cyphonaute 1593.00
60: detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇
204132.00
61: egg_Actinopterygii ▇ 5138.00
62: egg_Engraudilae ▇▇▇▇▇▇▇▇▇▇ 41455.00
63: egg_Mollusca 256.00
64: egg_Sardina ▇▇ 7754.00
65: egg_other 239.00
66: empty_Copepoda ▇▇▇▇ 17243.00
67: empty_Harpacticoida 619.00
68: eudoxie_Diphyidae 714.00
69: feces 847.00
70: fiber_detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇ 55355.00
71: fiber_plastic 185.00
72: gelatinous 1180.00
73: gonophore_Diphyidae ▇ 5945.00
74: larvae_Annelida 372.00
75: larvae_Crustacea ▇ 3557.00
76: larvae_Echinodermata 487.00
77: light_detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇ 53274.00
78: medium_detritus ▇ 2131.00
79: megalopa 1427.00
80: multiple_Copepoda ▇ 5750.00
81: nauplii_Crustacea ▇ 4637.00
82: nectophore_Diphyidae 1405.00
83: other_Crustacea 470.00
84: other_Siphonophorae 712.00
85: other_living ▇▇▇▇▇▇ 25454.00
86: other_plastic ▇ 4229.00
87: part_Crustacea 1264.00
88: pluteus_Echinodermata ▇ 2412.00
89: shrimp_like ▇ 3565.00
90: tail_Appendicularia 1860.00
91: veliger 127.00
92: zoea_brachyura ▇▇▇▇ 18693.00
```
dataset_means: '[0.86130397425359]'
dataset_stds: '[0.24343338161255404]'
Dataset ZooCAMNet: plankton images captured with the ZooCAM
Plankton was sampled with a Continuous Underway Fish Egg Sampler (CUFES, 315µm mesh size) at 4 m below the surface, and a WP2 net (200µm mesh size) from 100m to the surface, or 5 m above the sea floor to the surface when the depth was < 100 m, in the Bay of Biscay. The full images were processed with the ZooCAM software and the embedded Matrox Imaging Library (Colas et a., 2018) which generated regions of interest (ROIs) around each individual object and a set of features measured on the object. The same objects were re-processed to compute features with the scikit-image library http://scikit-image.org. The 1,286,590 resulting objects were sorted by a limited number of operators, following a common taxonomic guide, into 93 taxa, using the web application EcoTaxa http://ecotaxa.obs-vlfr.fr. For the purpose of training machine learning classifiers, the images in each class were split into training, validation, and test sets, with proportions 70%, 15% and 15%.
- Original dataset available online at: https://www.seanoe.org/data/00907/101928/.
- Original dataset license: <cc-by-nc-4.0>.
Details
- train split means (RGB): [0.86130397425359]
- train split standard deviations (RGB): [0.24343338161255404]
Samples per class for split train
0: Acartiidae ▇▇▇▇▇▇▇▇ 33912.00
1: Actinopterygii 100.00
2: Amphipoda 304.00
3: Annelida 390.00
4: Appendicularia ▇▇▇ 13086.00
5: Bivalvia ▇ 2482.00
6: Calanidae ▇▇▇ 11921.00
7: Calanoida ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 197751.00
8: Calocalanus 1054.00
9: Candaciidae 171.00
10: Cavoliniidae 365.00
11: Centropagidae ▇ 6203.00
12: Chaetognatha ▇ 3150.00
13: Ciripedia ▇▇ 8287.00
14: Cladocera ▇▇ 6669.00
15: Cnidaria 156.00
16: Copepoda ▇▇▇▇ 18557.00
17: Corycaeidae ▇ 3659.00
18: Ctenophora 116.00
19: Cyclopoida ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 139175.00
20: Decapoda 480.00
21: Diatoma ▇▇▇▇▇▇▇▇▇ 38247.00
22: Diatoma tenuis ▇ 4515.00
23: Doliolida 91.00
24: Euchaeta ▇ 4548.00
25: Euterpina 1449.00
26: Evadne 2014.00
27: Gastropoda 119.00
28: Halosphaera 508.00
29: Harpacticoida 645.00
30: Hydrozoa ▇ 2484.00
31: Isias 281.00
32: Limacinidae ▇▇ 10223.00
33: Luidiidae 110.00
34: Metrinidae ▇ 2499.00
35: Microstella 318.00
36: Nannosquillidae 81.00
37: Neoceratium ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 97680.00
38: Noctiluca ▇▇▇ 14269.00
39: Obelia 549.00
40: Oncaea ▇▇▇▇▇ 23336.00
41: Penilia 398.00
42: Phoronida 94.00
43: Physonectae 175.00
44: Podon 188.00
45: Poecilostomatoida 692.00
46: Pontellidae 239.00
47: Porcellanidae 884.00
48: Rhizaria ▇▇▇▇▇▇▇ 28835.00
49: Rhizosolenids ▇▇▇▇▇▇ 24178.00
50: Temoridae ▇▇▇ 14638.00
51: Thalassionema 279.00
52: Thaliacea 501.00
53: Trichodesmium ▇ 5319.00
54: artefact ▇▇▇ 13522.00
55: bract_Diphyidae 1845.00
56: bubble ▇▇▇▇▇▇▇▇▇▇▇▇▇ 53723.00
57: chainlarge ▇▇▇ 14375.00
58: comb_Ctenophora 270.00
59: cyphonaute 1593.00
60: detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇ 204132.00
61: egg_Actinopterygii ▇ 5138.00
62: egg_Engraudilae ▇▇▇▇▇▇▇▇▇▇ 41455.00
63: egg_Mollusca 256.00
64: egg_Sardina ▇▇ 7754.00
65: egg_other 239.00
66: empty_Copepoda ▇▇▇▇ 17243.00
67: empty_Harpacticoida 619.00
68: eudoxie_Diphyidae 714.00
69: feces 847.00
70: fiber_detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇ 55355.00
71: fiber_plastic 185.00
72: gelatinous 1180.00
73: gonophore_Diphyidae ▇ 5945.00
74: larvae_Annelida 372.00
75: larvae_Crustacea ▇ 3557.00
76: larvae_Echinodermata 487.00
77: light_detritus ▇▇▇▇▇▇▇▇▇▇▇▇▇ 53274.00
78: medium_detritus ▇ 2131.00
79: megalopa 1427.00
80: multiple_Copepoda ▇ 5750.00
81: nauplii_Crustacea ▇ 4637.00
82: nectophore_Diphyidae 1405.00
83: other_Crustacea 470.00
84: other_Siphonophorae 712.00
85: other_living ▇▇▇▇▇▇ 25454.00
86: other_plastic ▇ 4229.00
87: part_Crustacea 1264.00
88: pluteus_Echinodermata ▇ 2412.00
89: shrimp_like ▇ 3565.00
90: tail_Appendicularia 1860.00
91: veliger 127.00
92: zoea_brachyura ▇▇▇▇ 18693.00
Reference
Romagnan, J.-B., Panaïotis, T., Bourriau, P., Danielou, M.-M., Doray, M., Dupuy, C., Forest, B., Grandremy, N., Huret, M., Le Mestre, S., Nowaczyk, A., Petitgas, P., Pineau, P., Rouxel, J., Tardivel, M., & Irisson, J.-O. (2024). ZooCAMNet: plankton images captured with the ZooCAM. SEANOE. https://doi.org/10.17882/101928
BibTEX
@article{dataset:zoocamnet,
title = {ZooCAMNet: plankton images captured with the ZooCAM},
author = {Romagnan, Jean-Baptiste and Panaïotis, Thelma and Bourriau, Paul
and Danielou, Marie-Madeleine and Doray, Mathieu and Dupuy, Christine
and Forest, Bertrand and Grandremy, Nina and Huret, Martin and Le Mestre, Sophie
and Nowaczyk, Antoine and Petitgas, Pierre and Pineau, Philippe and Rouxel, Justin
and Tardivel, Morgan and Irisson, Jean-Olivier},
year = 2024,
journal = {SEANOE},
doi = {10.17882/101928},
affiliation = {DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Nantes, Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03, France. E-mail address: nina.grandremy@ifremer.fr.
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefanche, LOV, 06230 Villefranche-sur-mer, France.
Unité DYNECO-PELAGOS, Laboratoire d'Ecologie Pélagique, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
BIOFEEL, UMRi LIENSs, La Rochelle Université / CNRS, 2, rue Olympe de Gouges, 17000 La Rochelle, France.
Laboratoire Hydrodynamique Marine, Unité RDT, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.
UMR CNRS 5805 EPOC-OASU, Station Marine d'Arcachon, Université de Bordeaux, 2 Rue du Professeur Jolyet, 33120 Arcachon, France.
Departement Ressources Biologiques et Environnement, Ifremer Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03, France.
Laboratoire Détection, Capteurs et Mesures, Unité RDT, Ifremer Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané, France.}
}
Usage
from datasets import load_dataset
dataset = load_dataset("project-oceania/zoocamnet")