input stringlengths 28k 164k | pubmedid stringlengths 8 8 | output stringlengths 321 41.9k |
|---|---|---|
Predicting Essential Components of Signal
Transduction Networks: A Dynamic Model
of Guard Cell Abscisic Acid Signaling
Song Li1, Sarah M. Assmann1, Re´ka Albert2*
1 Biology Department, Pennsylvania State University, University Park, Pennsylvania, United States of America, 2 Physics Department, Pennsylvania State Univer... | 16968132 | ROS = ( Atrboh )
PEPC = NOT ( ( ABA ) )
PLD = ( GPA1 )
HTPase = NOT ( ( pH ) OR ( Ca2_c ) OR ( ROS ) )
Ca2_c = ( ( CIS ) AND NOT ( Ca2_ATPase ) ) OR ( ( CaIM ) AND NOT ( Ca2_ATPase ) )
ROP10 = ( ERA1 )
RAC1 = NOT ( ( ABA ) OR ( ABI1 ) )
OST1 = ( ABA )
ROP2 = ( PA )
InsP6 = ( InsPK )
SphK = ( ABA )
De... |
A Logical Model Provides Insights into T Cell
Receptor Signaling
Julio Saez-Rodriguez1, Luca Simeoni2, Jonathan A. Lindquist2, Rebecca Hemenway1, Ursula Bommhardt2,
Boerge Arndt2, Utz-Uwe Haus3, Robert Weismantel3, Ernst D. Gilles1, Steffen Klamt1*, Burkhart Schraven2*
1 Max Planck Institute for Dynamics of Complex Tec... | 17722974 | tcrlig = ( tcrlig )
vav1 = ( zap70 AND ( ( ( sh3bp2 ) ) ) ) OR ( xx )
lat = ( zap70 )
pi3k = ( ( xx ) AND NOT ( cblb ) ) OR ( ( lckp2 ) AND NOT ( cblb ) )
gap = ( unknown_input3 )
rac1r = ( unknown_input )
Dummy = ( ( plcgb AND ( ( ( vav1 AND zap70 AND itk AND slp76 ) ) ) ) AND NOT ( ccblp2 ) )
... |
"BioMed Central\nPage 1 of 26\n(page number not for citation purposes)\nBMC Bioinformatics\nOpen Acc(...TRUNCATED) | 16464248 | "Lck = ( ( CD45 AND ( ( ( CD8 ) ) ) ) AND NOT ( PAGCsk ) ) \nZAP70 = ( ( TCRphos AND ( ( ( Lck (...TRUNCATED) |
"BioMed Central\nPage 1 of 18\n(page number not for citation purposes)\nTheoretical Biology and Medi(...TRUNCATED) | 16542429 | "IL4 = ( ( GATA3 ) AND NOT ( STAT1 ) ) \nSOCS1 = ( Tbet ) OR ( STAT1 ) \nIFNg = ( ( STAT4 ) AND (...TRUNCATED) |
"Emergent decision-making in biological signal\ntransduction networks\nToma´sˇ Helikar*, John Konv(...TRUNCATED) | 18250321 | "PTP1b = ( NOT ( ( EGFR AND ( ( ( EGF ) ) ) ) OR ( Stress ) ) ) OR NOT ( EGFR OR EGF OR Stress(...TRUNCATED) |
"Global control of cell cycle transcription by coupled CDK and\nnetwork oscillators\nDavid A. Orland(...TRUNCATED) | 18463633 | "MBF = ( CLN3 ) \nHCM1 = ( MBF AND ( ( ( SBF ) ) ) ) \nSWI5 = ( SFF ) \nYOX1 = ( MBF AND ( ( ( SB(...TRUNCATED) |
"BioMed Central\nPage 1 of 15\n(page number not for citation purposes)\nBMC Systems Biology\nOpen Ac(...TRUNCATED) | 18433497 | "TBK1 = ( External_Activator ) \nIL1R1 = ( External_Activator ) \nAPAF1gene = ( TP53nucleus ) \nILIB(...TRUNCATED) |
"Network model of survival signaling in large granular\nlymphocyte leukemia\nRanran Zhang†, Mithun(...TRUNCATED) | 18852469 | "FasT = ( ( NFKB ) AND NOT ( Apoptosis ) ) \nsFas = ( ( FasT ) AND NOT ( Apoptosis ) ) \nIL2 = ((...TRUNCATED) |
"BioMed Central\nPage 1 of 14\n(page number not for citation purposes)\nBMC Systems Biology\nOpen Ac(...TRUNCATED) | 19025648 | "SREBP_SCAP = ( ( Insig_SREBP_SCAP ) AND NOT ( Statins ) ) \nMevalonyl_pyrophosphate = ( Mevalonic(...TRUNCATED) |
"BioMed Central\nPage 1 of 20\n(page number not for citation purposes)\nBMC Systems Biology\nOpen Ac(...TRUNCATED) | 19118495 | "ERa = ( MEK1 ) OR ( Akt1 ) \np21 = ( ( ( ( ERa ) AND NOT ( Akt1 ) ) AND NOT ( CDK4 ) ) AND NO(...TRUNCATED) |
End of preview. Expand in Data Studio
README.md exists but content is empty.
- Downloads last month
- 5