| { |
| "test_data": "Scripts/Prediction_Model/Data/processed/test.jsonl", |
| "num_samples": 2206, |
| "activity_bins": [ |
| 8.0, |
| 32.0, |
| 128.0 |
| ], |
| "num_classes": 5, |
| "class_names": [ |
| "background", |
| "class_1", |
| "class_2", |
| "class_3", |
| "class_4" |
| ], |
| "individual_models": { |
| "SMILES_LSTM_L": { |
| "accuracy": 0.7166817769718948, |
| "macro_f1": 0.5663375955143567, |
| "weighted_f1": 0.7177983249986575, |
| "mcc": 0.5870973542041346, |
| "per_class": { |
| "background": { |
| "precision": 0.9808043875685558, |
| "recall": 0.9728014505893019, |
| "f1": 0.9767865270823851, |
| "support": 1103 |
| }, |
| "class_1": { |
| "precision": 0.46530612244897956, |
| "recall": 0.49137931034482757, |
| "f1": 0.4779874213836478, |
| "support": 232 |
| }, |
| "class_2": { |
| "precision": 0.3987538940809969, |
| "recall": 0.41025641025641024, |
| "f1": 0.40442338072669826, |
| "support": 312 |
| }, |
| "class_3": { |
| "precision": 0.4796511627906977, |
| "recall": 0.4583333333333333, |
| "f1": 0.46875, |
| "support": 360 |
| }, |
| "class_4": { |
| "precision": 0.5, |
| "recall": 0.507537688442211, |
| "f1": 0.5037406483790524, |
| "support": 199 |
| } |
| }, |
| "confusion_matrix": [ |
| [ |
| 1073, |
| 16, |
| 9, |
| 3, |
| 2 |
| ], |
| [ |
| 10, |
| 114, |
| 72, |
| 28, |
| 8 |
| ], |
| [ |
| 4, |
| 70, |
| 128, |
| 88, |
| 22 |
| ], |
| [ |
| 3, |
| 35, |
| 88, |
| 165, |
| 69 |
| ], |
| [ |
| 4, |
| 10, |
| 24, |
| 60, |
| 101 |
| ] |
| ], |
| "ci": { |
| "accuracy": { |
| "mean": 0.7162407071622847, |
| "std": 0.009703977267762818, |
| "lo": 0.69808476881233, |
| "hi": 0.7348141432456936 |
| }, |
| "macro_f1": { |
| "mean": 0.5653792721166279, |
| "std": 0.012424131223828216, |
| "lo": 0.5400125900093588, |
| "hi": 0.5899073170618505 |
| }, |
| "weighted_f1": { |
| "mean": 0.7173515434984938, |
| "std": 0.009672718328881912, |
| "lo": 0.6986544432425864, |
| "hi": 0.7355328921751165 |
| }, |
| "mcc": { |
| "mean": 0.5865434621180725, |
| "std": 0.012154286917164784, |
| "lo": 0.5629239642462713, |
| "hi": 0.6097628404198879 |
| }, |
| "per_class_f1": { |
| "background": { |
| "mean": 0.9768191319575045, |
| "std": 0.003158934153554532, |
| "lo": 0.9705460445423746, |
| "hi": 0.9827158391330366 |
| }, |
| "class_1": { |
| "mean": 0.47684854354519185, |
| "std": 0.02836533321193598, |
| "lo": 0.4207983193277311, |
| "hi": 0.5327515533111146 |
| }, |
| "class_2": { |
| "mean": 0.4036807023468202, |
| "std": 0.02392790122096041, |
| "lo": 0.3570270949848372, |
| "hi": 0.45045045045045046 |
| }, |
| "class_3": { |
| "mean": 0.4665562201031015, |
| "std": 0.02337425604348334, |
| "lo": 0.4202629580406303, |
| "hi": 0.5110033030553262 |
| }, |
| "class_4": { |
| "mean": 0.5029917626305207, |
| "std": 0.030829001478688865, |
| "lo": 0.4432424945721345, |
| "hi": 0.5625078517587939 |
| } |
| } |
| } |
| }, |
| "HELM_LSTM_M": { |
| "accuracy": 0.7058023572076156, |
| "macro_f1": 0.5810710534614763, |
| "weighted_f1": 0.7060063078489879, |
| "mcc": 0.5716944944460127, |
| "per_class": { |
| "background": { |
| "precision": 0.9218181818181819, |
| "recall": 0.9193109700815957, |
| "f1": 0.920562868815252, |
| "support": 1103 |
| }, |
| "class_1": { |
| "precision": 0.43014705882352944, |
| "recall": 0.5043103448275862, |
| "f1": 0.4642857142857143, |
| "support": 232 |
| }, |
| "class_2": { |
| "precision": 0.45695364238410596, |
| "recall": 0.4423076923076923, |
| "f1": 0.4495114006514658, |
| "support": 312 |
| }, |
| "class_3": { |
| "precision": 0.5416666666666666, |
| "recall": 0.46944444444444444, |
| "f1": 0.5029761904761905, |
| "support": 360 |
| }, |
| "class_4": { |
| "precision": 0.5409090909090909, |
| "recall": 0.5979899497487438, |
| "f1": 0.568019093078759, |
| "support": 199 |
| } |
| }, |
| "confusion_matrix": [ |
| [ |
| 1014, |
| 58, |
| 15, |
| 9, |
| 7 |
| ], |
| [ |
| 40, |
| 117, |
| 53, |
| 15, |
| 7 |
| ], |
| [ |
| 18, |
| 66, |
| 138, |
| 73, |
| 17 |
| ], |
| [ |
| 18, |
| 26, |
| 77, |
| 169, |
| 70 |
| ], |
| [ |
| 10, |
| 5, |
| 19, |
| 46, |
| 119 |
| ] |
| ], |
| "ci": { |
| "accuracy": { |
| "mean": 0.7055607434270172, |
| "std": 0.010052908280013297, |
| "lo": 0.6867520398912057, |
| "hi": 0.7243880326382592 |
| }, |
| "macro_f1": { |
| "mean": 0.5803858671403801, |
| "std": 0.012408967771532532, |
| "lo": 0.5559312019738095, |
| "hi": 0.6034819401985598 |
| }, |
| "weighted_f1": { |
| "mean": 0.7056884209501423, |
| "std": 0.010082481393283722, |
| "lo": 0.6865325124407166, |
| "hi": 0.7245126829878555 |
| }, |
| "mcc": { |
| "mean": 0.57136799439393, |
| "std": 0.012909182525156583, |
| "lo": 0.5465288165325599, |
| "hi": 0.5958982010529519 |
| }, |
| "per_class_f1": { |
| "background": { |
| "mean": 0.9206668541314933, |
| "std": 0.006249992585756758, |
| "lo": 0.9076751673090797, |
| "hi": 0.9330923048879439 |
| }, |
| "class_1": { |
| "mean": 0.4645148656893315, |
| "std": 0.027782990089709598, |
| "lo": 0.40979313429002817, |
| "hi": 0.5153476885174629 |
| }, |
| "class_2": { |
| "mean": 0.44837955913698874, |
| "std": 0.0250344358234373, |
| "lo": 0.4006351791530945, |
| "hi": 0.49518420883430847 |
| }, |
| "class_3": { |
| "mean": 0.5002754016004048, |
| "std": 0.022634724335757746, |
| "lo": 0.45522458712511665, |
| "hi": 0.5449082764221148 |
| }, |
| "class_4": { |
| "mean": 0.5680926551436823, |
| "std": 0.028788052333206745, |
| "lo": 0.5125645942781019, |
| "hi": 0.6247481824190351 |
| } |
| } |
| } |
| }, |
| "HELM_GCN_L": { |
| "accuracy": 0.6355394378966455, |
| "macro_f1": 0.5046989973453471, |
| "weighted_f1": 0.6481205859068757, |
| "mcc": 0.4843902956715556, |
| "per_class": { |
| "background": { |
| "precision": 0.9404040404040404, |
| "recall": 0.844061650045331, |
| "f1": 0.8896321070234113, |
| "support": 1103 |
| }, |
| "class_1": { |
| "precision": 0.3353115727002967, |
| "recall": 0.4870689655172414, |
| "f1": 0.39718804920913886, |
| "support": 232 |
| }, |
| "class_2": { |
| "precision": 0.38095238095238093, |
| "recall": 0.38461538461538464, |
| "f1": 0.3827751196172249, |
| "support": 312 |
| }, |
| "class_3": { |
| "precision": 0.4155124653739612, |
| "recall": 0.4166666666666667, |
| "f1": 0.4160887656033287, |
| "support": 360 |
| }, |
| "class_4": { |
| "precision": 0.43349753694581283, |
| "recall": 0.44221105527638194, |
| "f1": 0.43781094527363185, |
| "support": 199 |
| } |
| }, |
| "confusion_matrix": [ |
| [ |
| 931, |
| 105, |
| 32, |
| 28, |
| 7 |
| ], |
| [ |
| 28, |
| 113, |
| 58, |
| 25, |
| 8 |
| ], |
| [ |
| 10, |
| 66, |
| 120, |
| 87, |
| 29 |
| ], |
| [ |
| 14, |
| 40, |
| 85, |
| 150, |
| 71 |
| ], |
| [ |
| 7, |
| 13, |
| 20, |
| 71, |
| 88 |
| ] |
| ], |
| "ci": { |
| "accuracy": { |
| "mean": 0.6357030825022666, |
| "std": 0.010005508252929377, |
| "lo": 0.6160471441523119, |
| "hi": 0.6541364460562102 |
| }, |
| "macro_f1": { |
| "mean": 0.5045633534663362, |
| "std": 0.011767086052024145, |
| "lo": 0.4815126088310965, |
| "hi": 0.5278033391178993 |
| }, |
| "weighted_f1": { |
| "mean": 0.6482317122178274, |
| "std": 0.009683110084265596, |
| "lo": 0.6286938347192461, |
| "hi": 0.66635009163717 |
| }, |
| "mcc": { |
| "mean": 0.4845975764577184, |
| "std": 0.012313678312231105, |
| "lo": 0.460771806455643, |
| "hi": 0.5085658888080611 |
| }, |
| "per_class_f1": { |
| "background": { |
| "mean": 0.8896215101430643, |
| "std": 0.007322619908879689, |
| "lo": 0.873820896089137, |
| "hi": 0.9032888690597048 |
| }, |
| "class_1": { |
| "mean": 0.39716708688667357, |
| "std": 0.02598502931806514, |
| "lo": 0.34415638464551507, |
| "hi": 0.4456116567835727 |
| }, |
| "class_2": { |
| "mean": 0.38257342877053135, |
| "std": 0.023689639750368467, |
| "lo": 0.33769204714808293, |
| "hi": 0.4268816232737657 |
| }, |
| "class_3": { |
| "mean": 0.41599642864844105, |
| "std": 0.022609402243672565, |
| "lo": 0.3697155585801874, |
| "hi": 0.4586215957386421 |
| }, |
| "class_4": { |
| "mean": 0.43745831288297066, |
| "std": 0.03094004803891305, |
| "lo": 0.3778218715840502, |
| "hi": 0.4973061794188555 |
| } |
| } |
| } |
| }, |
| "SMILES_GCN_L": { |
| "accuracy": 0.6165004533091568, |
| "macro_f1": 0.4477587682716903, |
| "weighted_f1": 0.6286133269413668, |
| "mcc": 0.46304632955961805, |
| "per_class": { |
| "background": { |
| "precision": 0.982010582010582, |
| "recall": 0.8413417951042611, |
| "f1": 0.90625, |
| "support": 1103 |
| }, |
| "class_1": { |
| "precision": 0.2829581993569132, |
| "recall": 0.3793103448275862, |
| "f1": 0.3241252302025783, |
| "support": 232 |
| }, |
| "class_2": { |
| "precision": 0.3333333333333333, |
| "recall": 0.3108974358974359, |
| "f1": 0.32172470978441126, |
| "support": 312 |
| }, |
| "class_3": { |
| "precision": 0.3821428571428571, |
| "recall": 0.5944444444444444, |
| "f1": 0.4652173913043478, |
| "support": 360 |
| }, |
| "class_4": { |
| "precision": 0.3333333333333333, |
| "recall": 0.1658291457286432, |
| "f1": 0.2214765100671141, |
| "support": 199 |
| } |
| }, |
| "confusion_matrix": [ |
| [ |
| 928, |
| 130, |
| 17, |
| 27, |
| 1 |
| ], |
| [ |
| 10, |
| 88, |
| 82, |
| 51, |
| 1 |
| ], |
| [ |
| 2, |
| 45, |
| 97, |
| 144, |
| 24 |
| ], |
| [ |
| 3, |
| 32, |
| 71, |
| 214, |
| 40 |
| ], |
| [ |
| 2, |
| 16, |
| 24, |
| 124, |
| 33 |
| ] |
| ], |
| "ci": { |
| "accuracy": { |
| "mean": 0.6163050770625567, |
| "std": 0.010405298012966762, |
| "lo": 0.5961015412511332, |
| "hi": 0.6368993653671804 |
| }, |
| "macro_f1": { |
| "mean": 0.4474061738133771, |
| "std": 0.011854648768233094, |
| "lo": 0.42595022926061926, |
| "hi": 0.4704250766344216 |
| }, |
| "weighted_f1": { |
| "mean": 0.6284680630277619, |
| "std": 0.009882315907005468, |
| "lo": 0.6083093885795208, |
| "hi": 0.6469789827653675 |
| }, |
| "mcc": { |
| "mean": 0.4628662242001883, |
| "std": 0.01230440172461445, |
| "lo": 0.4387219581696465, |
| "hi": 0.48624552753797273 |
| }, |
| "per_class_f1": { |
| "background": { |
| "mean": 0.9061505588212515, |
| "std": 0.006835650977039594, |
| "lo": 0.892610019627463, |
| "hi": 0.9194761549275821 |
| }, |
| "class_1": { |
| "mean": 0.32434149014506825, |
| "std": 0.026959858714594446, |
| "lo": 0.2748054690153115, |
| "hi": 0.3788771679733904 |
| }, |
| "class_2": { |
| "mean": 0.3217940272616469, |
| "std": 0.023914455312185303, |
| "lo": 0.2768506289918928, |
| "hi": 0.36964041259431407 |
| }, |
| "class_3": { |
| "mean": 0.46393164801546477, |
| "std": 0.020181611192942546, |
| "lo": 0.42551537867930767, |
| "hi": 0.5022929111442972 |
| }, |
| "class_4": { |
| "mean": 0.2208131448234542, |
| "std": 0.03353613758359799, |
| "lo": 0.15230531331278824, |
| "hi": 0.2857386640663091 |
| } |
| } |
| } |
| } |
| }, |
| "ensemble": { |
| "soft_vote": { |
| "accuracy": 0.7393472348141432, |
| "macro_f1": 0.6049414964405878, |
| "weighted_f1": 0.7376514645999804, |
| "mcc": 0.6175463974914596, |
| "per_class": { |
| "background": { |
| "precision": 0.9588918677390528, |
| "recall": 0.9728014505893019, |
| "f1": 0.9657965796579658, |
| "support": 1103 |
| }, |
| "class_1": { |
| "precision": 0.5063291139240507, |
| "recall": 0.5172413793103449, |
| "f1": 0.511727078891258, |
| "support": 232 |
| }, |
| "class_2": { |
| "precision": 0.46488294314381273, |
| "recall": 0.44551282051282054, |
| "f1": 0.45499181669394434, |
| "support": 312 |
| }, |
| "class_3": { |
| "precision": 0.5207756232686981, |
| "recall": 0.5222222222222223, |
| "f1": 0.521497919556172, |
| "support": 360 |
| }, |
| "class_4": { |
| "precision": 0.5842105263157895, |
| "recall": 0.5577889447236181, |
| "f1": 0.570694087403599, |
| "support": 199 |
| } |
| }, |
| "confusion_matrix": [ |
| [ |
| 1073, |
| 18, |
| 4, |
| 8, |
| 0 |
| ], |
| [ |
| 24, |
| 120, |
| 66, |
| 19, |
| 3 |
| ], |
| [ |
| 7, |
| 65, |
| 139, |
| 84, |
| 17 |
| ], |
| [ |
| 9, |
| 25, |
| 79, |
| 188, |
| 59 |
| ], |
| [ |
| 6, |
| 9, |
| 11, |
| 62, |
| 111 |
| ] |
| ], |
| "ci": { |
| "accuracy": { |
| "mean": 0.7390525838621941, |
| "std": 0.009417175295525127, |
| "lo": 0.7221101541251133, |
| "hi": 0.757479601087942 |
| }, |
| "macro_f1": { |
| "mean": 0.6041974508628377, |
| "std": 0.012403864225624294, |
| "lo": 0.5799005840187357, |
| "hi": 0.6296829503370338 |
| }, |
| "weighted_f1": { |
| "mean": 0.7373796551252342, |
| "std": 0.009566844632248765, |
| "lo": 0.7195132079273608, |
| "hi": 0.7561892579929119 |
| }, |
| "mcc": { |
| "mean": 0.6172281432192289, |
| "std": 0.012185436447716703, |
| "lo": 0.5940513190022745, |
| "hi": 0.6410644734586545 |
| }, |
| "per_class_f1": { |
| "background": { |
| "mean": 0.9659705597766792, |
| "std": 0.003971795575364737, |
| "lo": 0.9583517727192645, |
| "hi": 0.9735922030831637 |
| }, |
| "class_1": { |
| "mean": 0.5113863939301745, |
| "std": 0.028896961763823812, |
| "lo": 0.4537298570921271, |
| "hi": 0.568115188514692 |
| }, |
| "class_2": { |
| "mean": 0.45385788413777234, |
| "std": 0.02509439642940083, |
| "lo": 0.404638680438254, |
| "hi": 0.5041099404802627 |
| }, |
| "class_3": { |
| "mean": 0.5196690988017812, |
| "std": 0.022302918585635996, |
| "lo": 0.4770044015368902, |
| "hi": 0.5643745920047651 |
| }, |
| "class_4": { |
| "mean": 0.5701033176677812, |
| "std": 0.02979418444390121, |
| "lo": 0.5134995098725669, |
| "hi": 0.6260013932427726 |
| } |
| } |
| } |
| }, |
| "weighted_vote": { |
| "accuracy": 0.7420670897552131, |
| "macro_f1": 0.6091689225013228, |
| "weighted_f1": 0.7402830840445802, |
| "mcc": 0.6216406958977387, |
| "per_class": { |
| "background": { |
| "precision": 0.9597855227882037, |
| "recall": 0.9737080689029919, |
| "f1": 0.9666966696669667, |
| "support": 1103 |
| }, |
| "class_1": { |
| "precision": 0.5185185185185185, |
| "recall": 0.5431034482758621, |
| "f1": 0.5305263157894737, |
| "support": 232 |
| }, |
| "class_2": { |
| "precision": 0.4745762711864407, |
| "recall": 0.44871794871794873, |
| "f1": 0.4612850082372323, |
| "support": 312 |
| }, |
| "class_3": { |
| "precision": 0.5195530726256983, |
| "recall": 0.5166666666666667, |
| "f1": 0.5181058495821727, |
| "support": 360 |
| }, |
| "class_4": { |
| "precision": 0.581151832460733, |
| "recall": 0.5577889447236181, |
| "f1": 0.5692307692307692, |
| "support": 199 |
| } |
| }, |
| "confusion_matrix": [ |
| [ |
| 1074, |
| 17, |
| 4, |
| 8, |
| 0 |
| ], |
| [ |
| 24, |
| 126, |
| 60, |
| 19, |
| 3 |
| ], |
| [ |
| 6, |
| 66, |
| 140, |
| 83, |
| 17 |
| ], |
| [ |
| 9, |
| 25, |
| 80, |
| 186, |
| 60 |
| ], |
| [ |
| 6, |
| 9, |
| 11, |
| 62, |
| 111 |
| ] |
| ], |
| "weights": { |
| "SMILES_LSTM_L": 0.6121, |
| "HELM_LSTM_M": 0.6021, |
| "HELM_GCN_L": 0.5136, |
| "SMILES_GCN_L": 0.4791 |
| }, |
| "ci": { |
| "accuracy": { |
| "mean": 0.7416572982774253, |
| "std": 0.009362160196705415, |
| "lo": 0.7243880326382592, |
| "hi": 0.7592928377153219 |
| }, |
| "macro_f1": { |
| "mean": 0.6082400084304509, |
| "std": 0.01236576765297997, |
| "lo": 0.5844356888441572, |
| "hi": 0.6324333196147294 |
| }, |
| "weighted_f1": { |
| "mean": 0.7398922633883762, |
| "std": 0.009511295757874957, |
| "lo": 0.7225084112711344, |
| "hi": 0.757619936349247 |
| }, |
| "mcc": { |
| "mean": 0.6211486629027111, |
| "std": 0.01211140332666861, |
| "lo": 0.5982798931506621, |
| "hi": 0.6439316669451519 |
| }, |
| "per_class_f1": { |
| "background": { |
| "mean": 0.966831087366359, |
| "std": 0.00391467109554086, |
| "lo": 0.9591743033443912, |
| "hi": 0.9741302408563782 |
| }, |
| "class_1": { |
| "mean": 0.5295166821973823, |
| "std": 0.028747358922706297, |
| "lo": 0.47255855909144684, |
| "hi": 0.5882411413869723 |
| }, |
| "class_2": { |
| "mean": 0.4598772614607711, |
| "std": 0.025126056612095313, |
| "lo": 0.4097125598444045, |
| "hi": 0.507666754029616 |
| }, |
| "class_3": { |
| "mean": 0.5163238977941953, |
| "std": 0.022431411966346747, |
| "lo": 0.4727429620855916, |
| "hi": 0.5612140430658676 |
| }, |
| "class_4": { |
| "mean": 0.5686511133335471, |
| "std": 0.029796379313704376, |
| "lo": 0.5097934079798139, |
| "hi": 0.6247001939836128 |
| } |
| } |
| } |
| } |
| } |
| } |