Datasets:

---

rafiaa

/

eicu_demo

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 13 new columns ({'rxincluded', 'drugoffset', 'drugnotetype', 'specialtytype', 'drugenteredoffset', 'drugname', 'usertype', 'drugunit', 'drughiclseqno', 'admissiondrugid', 'writtenineicu', 'drugadmitfrequency', 'drugdosage'}) and 5 missing columns ({'admitdxname', 'admitdxpath', 'admitdxtext', 'admissiondxid', 'admitdxenteredoffset'}).

This happened while the csv dataset builder was generating data using

/tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissiondrug.csv.gz, [/tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissionDx.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissionDx.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissiondrug.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissiondrug.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/allergy.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/allergy.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apacheApsVar.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apacheApsVar.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apachePatientResult.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apachePatientResult.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apachePredVar.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apachePredVar.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanCareProvider.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanCareProvider.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanEOL.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanEOL.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanGeneral.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanGeneral.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanGoal.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanGoal.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanInfectiousDisease.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/carePlanInfectiousDisease.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/customLab.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/customLab.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/diagnosis.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/diagnosis.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/hospital.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/hospital.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/infusiondrug.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/infusiondrug.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/intakeOutput.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/intakeOutput.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/lab.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/lab.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/medication.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/medication.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/microLab.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/microLab.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/note.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/note.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/nurseAssessment.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/nurseAssessment.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/nurseCare.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/nurseCare.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/nurseCharting.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/nurseCharting.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/pastHistory.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/pastHistory.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/patient.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/patient.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/physicalExam.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/physicalExam.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/respiratoryCare.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/respiratoryCare.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/respiratoryCharting.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/respiratoryCharting.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/treatment.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/treatment.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/vitalAperiodic.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/vitalAperiodic.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/vitalPeriodic.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/vitalPeriodic.csv.gz)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              admissiondrugid: int64
              patientunitstayid: int64
              drugoffset: int64
              drugenteredoffset: int64
              drugnotetype: string
              specialtytype: string
              usertype: string
              rxincluded: bool
              writtenineicu: bool
              drugname: string
              drugdosage: double
              drugunit: string
              drugadmitfrequency: string
              drughiclseqno: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1982
              to
              {'admissiondxid': Value('int64'), 'patientunitstayid': Value('int64'), 'admitdxenteredoffset': Value('int64'), 'admitdxpath': Value('string'), 'admitdxname': Value('string'), 'admitdxtext': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 13 new columns ({'rxincluded', 'drugoffset', 'drugnotetype', 'specialtytype', 'drugenteredoffset', 'drugname', 'usertype', 'drugunit', 'drughiclseqno', 'admissiondrugid', 'writtenineicu', 'drugadmitfrequency', 'drugdosage'}) and 5 missing columns ({'admitdxname', 'admitdxpath', 'admitdxtext', 'admissiondxid', 'admitdxenteredoffset'}).
              
              This happened while the csv dataset builder was generating data using
              
              /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissiondrug.csv.gz, [/tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissionDx.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissionDx.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissiondrug.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/admissiondrug.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/allergy.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/allergy.csv.gz), /tmp/hf-datasets-cache/medium/datasets/16342578651206-config-parquet-and-info-rafiaa-eicu_demo-defdbcde/hub/datasets--rafiaa--eicu_demo/snapshots/4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apacheApsVar.csv.gz (origin=hf://datasets/rafiaa/eicu_demo@4770ee0b6bfc7db22422998c313cce68c8016067/physionet.org/files/eicu-crd-demo/2.0.1/apacheApsVar.csv.gz), 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              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)