Datasets:

---

rafiaa

/

mimiciv_demo

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 15 new columns ({'dischtime', 'race', 'deathtime', 'marital_status', 'edouttime', 'admission_type', 'insurance', 'hospital_expire_flag', 'admit_provider_id', 'hadm_id', 'discharge_location', 'admittime', 'language', 'edregtime', 'admission_location'})

This happened while the csv dataset builder was generating data using

/tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/admissions.csv.gz, [/tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/demo_subject_id.csv (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/demo_subject_id.csv), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/admissions.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/admissions.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_hcpcs.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_hcpcs.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_icd_diagnoses.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_icd_diagnoses.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_icd_procedures.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_icd_procedures.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_labitems.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/d_labitems.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/diagnoses_icd.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/diagnoses_icd.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/drgcodes.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/drgcodes.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/emar.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/emar.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/emar_detail.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/emar_detail.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/hcpcsevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/hcpcsevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/labevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/labevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/microbiologyevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/microbiologyevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/omr.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/omr.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/patients.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/patients.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/pharmacy.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/pharmacy.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/poe.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/poe.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/poe_detail.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/poe_detail.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/prescriptions.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/prescriptions.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/procedures_icd.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/procedures_icd.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/provider.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/provider.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/services.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/services.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/transfers.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/hosp/transfers.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/caregiver.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/caregiver.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/chartevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/chartevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/d_items.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/d_items.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/datetimeevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/datetimeevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/icustays.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/icustays.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/ingredientevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/ingredientevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/inputevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/inputevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/outputevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/outputevents.csv.gz), /tmp/hf-datasets-cache/medium/datasets/22807949572381-config-parquet-and-info-rafiaa-mimiciv_demo-a8086807/hub/datasets--rafiaa--mimiciv_demo/snapshots/ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/procedureevents.csv.gz (origin=hf://datasets/rafiaa/mimiciv_demo@ff3c813811128a1d99e8f69a6b5a4e8e0a8b516b/physionet.org/files/mimic-iv-demo/2.2/icu/procedureevents.csv.gz)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              subject_id: int64
              hadm_id: int64
              admittime: string
              dischtime: string
              deathtime: string
              admission_type: string
              admit_provider_id: string
              admission_location: string
              discharge_location: string
              insurance: string
              language: string
              marital_status: string
              race: string
              edregtime: string
              edouttime: string
              hospital_expire_flag: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 2220
              to
              {'subject_id': Value('int64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 15 new columns ({'dischtime', 'race', 'deathtime', 'marital_status', 'edouttime', 'admission_type', 'insurance', 'hospital_expire_flag', 'admit_provider_id', 'hadm_id', 'discharge_location', 'admittime', 'language', 'edregtime', 'admission_location'})
              
              This happened while the csv dataset builder was generating data using
              
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              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)