project_name string | class_name string | class_modifiers string | class_implements int64 | class_extends int64 | function_name string | function_body string | cyclomatic_complexity int64 | NLOC int64 | num_parameter int64 | num_token int64 | num_variable int64 | start_line int64 | end_line int64 | function_index int64 | function_params string | function_variable string | function_return_type string | function_body_line_type string | function_num_functions int64 | function_num_lines int64 | outgoing_function_count int64 | outgoing_function_names string | incoming_function_count int64 | incoming_function_names string | lexical_representation string |
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CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | replace_with_empty_patch | def replace_with_empty_patch(self, img_tuples):"""Replaces the content of one of the channels with background"""empty_index = self._empty_patch_fetcher.sample()empty_img_tuples, empty_img_noise_tuples = self._get_img(empty_index)assert (len(empty_img_noise_tuples) == 0), "Noise is not supported with empty patch replace... | 3 | 13 | 2 | 85 | 0 | 584 | 599 | 584 | self,img_tuples | [] | Returns | {"Assign": 3, "Expr": 3, "For": 1, "If": 1, "Return": 1} | 8 | 16 | 8 | ["self._empty_patch_fetcher.sample", "self._get_img", "len", "range", "len", "final_img_tuples.append", "final_img_tuples.append", "tuple"] | 0 | [] | The function (replace_with_empty_patch) defined within the public class called MultiChDloaderRef.The function start at line 584 and ends at 599. It contains 13 lines of code and it has a cyclomatic complexity of 3. It takes 2 parameters, represented as [584.0], and this function return a value. It declares 8.0 function... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | get_mean_std_for_input | def get_mean_std_for_input(self):mean, std = self.get_mean_std()return mean["input"], std["input"] | 1 | 3 | 1 | 24 | 0 | 601 | 603 | 601 | self | [] | Returns | {"Assign": 1, "Return": 1} | 1 | 3 | 1 | ["self.get_mean_std"] | 0 | [] | The function (get_mean_std_for_input) defined within the public class called MultiChDloaderRef.The function start at line 601 and ends at 603. It contains 3 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It declare 1.0 function, and I... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _compute_target | def _compute_target(self, img_tuples, alpha):if self._tar_idx_list is not None and isinstance(self._tar_idx_list, int):target = img_tuples[self._tar_idx_list]else:if self._tar_idx_list is not None:assert isinstance(self._tar_idx_list, list) or isinstance(self._tar_idx_list, tuple)img_tuples = [img_tuples[i] for i in se... | 6 | 11 | 3 | 90 | 0 | 605 | 616 | 605 | self,img_tuples,alpha | [] | Returns | {"Assign": 3, "If": 2, "Return": 1} | 4 | 12 | 4 | ["isinstance", "isinstance", "isinstance", "np.stack"] | 0 | [] | The function (_compute_target) defined within the public class called MultiChDloaderRef.The function start at line 605 and ends at 616. It contains 11 lines of code and it has a cyclomatic complexity of 6. It takes 3 parameters, represented as [605.0], and this function return a value. It declares 4.0 functions, and I... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _compute_input_with_alpha | def _compute_input_with_alpha(self, img_tuples, alpha_list):# assert self._normalized_input is True, "normalization should happen here"if self._input_idx is not None:inp = img_tuples[self._input_idx]else:inp = 0for alpha, img in zip(alpha_list, img_tuples):inp += img * alphaif self._normalized_input is False:return inp... | 6 | 24 | 3 | 166 | 0 | 618 | 646 | 618 | self,img_tuples,alpha_list | [] | Returns | {"Assign": 8, "AugAssign": 1, "For": 2, "If": 3, "Return": 2} | 10 | 29 | 10 | ["zip", "inp.astype", "self.get_mean_std_for_input", "mean.squeeze", "std.squeeze", "mean.reshape", "std.reshape", "range", "len", "inp.astype"] | 0 | [] | The function (_compute_input_with_alpha) defined within the public class called MultiChDloaderRef.The function start at line 618 and ends at 646. It contains 24 lines of code and it has a cyclomatic complexity of 6. It takes 3 parameters, represented as [618.0], and this function return a value. It declares 10.0 functi... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _sample_alpha | def _sample_alpha(self):alpha_arr = []for i in range(self._num_channels):alpha_pos = np.random.rand()alpha = self._start_alpha_arr[i] + alpha_pos * (self._end_alpha_arr[i] - self._start_alpha_arr[i])alpha_arr.append(alpha)return alpha_arr | 2 | 9 | 1 | 62 | 0 | 648 | 656 | 648 | self | [] | Returns | {"Assign": 3, "Expr": 1, "For": 1, "Return": 1} | 3 | 9 | 3 | ["range", "np.random.rand", "alpha_arr.append"] | 0 | [] | The function (_sample_alpha) defined within the public class called MultiChDloaderRef.The function start at line 648 and ends at 656. It contains 9 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It declares 3.0 functions, and It has 3... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _compute_input | def _compute_input(self, img_tuples):alpha = [1 / len(img_tuples) for _ in range(len(img_tuples))]if self._start_alpha_arr is not None:alpha = self._sample_alpha()inp = self._compute_input_with_alpha(img_tuples, alpha)if self._input_is_sum:inp = len(img_tuples) * inp# TODO instead we add channel hereif len(inp.shape) =... | 7 | 10 | 2 | 102 | 0 | 658 | 671 | 658 | self,img_tuples | [] | Returns | {"Assign": 5, "If": 3, "Return": 1} | 8 | 14 | 8 | ["len", "range", "len", "self._sample_alpha", "self._compute_input_with_alpha", "len", "len", "len"] | 0 | [] | The function (_compute_input) defined within the public class called MultiChDloaderRef.The function start at line 658 and ends at 671. It contains 10 lines of code and it has a cyclomatic complexity of 7. It takes 2 parameters, represented as [658.0], and this function return a value. It declares 8.0 functions, and It... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _get_index_from_valid_target_logic | def _get_index_from_valid_target_logic(self, index):if self._validtarget_rand_fract is not None:if np.random.rand() < self._validtarget_rand_fract:index = self._train_index_switcher.get_valid_target_index()else:index = self._train_index_switcher.get_invalid_target_index()return index | 3 | 7 | 2 | 50 | 0 | 673 | 679 | 673 | self,index | [] | Returns | {"Assign": 2, "If": 2, "Return": 1} | 3 | 7 | 3 | ["np.random.rand", "self._train_index_switcher.get_valid_target_index", "self._train_index_switcher.get_invalid_target_index"] | 0 | [] | The function (_get_index_from_valid_target_logic) defined within the public class called MultiChDloaderRef.The function start at line 673 and ends at 679. It contains 7 lines of code and it has a cyclomatic complexity of 3. It takes 2 parameters, represented as [673.0], and this function return a value. It declares 3.0... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _rotate2D | def _rotate2D(self, img_tuples):img_kwargs = {}for i, img in enumerate(img_tuples):for k in range(len(img)):img_kwargs[f"img{i}_{k}"] = img[k]keys = list(img_kwargs.keys())self._rotation_transform.add_targets({k: "image" for k in keys})rot_dic = self._rotation_transform(image=img_tuples[0][0], **img_kwargs)rotated_img_... | 7 | 19 | 2 | 160 | 0 | 681 | 702 | 681 | self,img_tuples | [] | Returns | {"Assign": 5, "Expr": 3, "For": 3, "If": 1, "Return": 1} | 14 | 22 | 14 | ["enumerate", "range", "len", "list", "img_kwargs.keys", "self._rotation_transform.add_targets", "self._rotation_transform", "enumerate", "len", "rotated_img_tuples.append", "rotated_img_tuples.append", "np.concatenate", "range", "len"] | 0 | [] | The function (_rotate2D) defined within the public class called MultiChDloaderRef.The function start at line 681 and ends at 702. It contains 19 lines of code and it has a cyclomatic complexity of 7. It takes 2 parameters, represented as [681.0], and this function return a value. It declares 14.0 functions, and It has... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _rotate3D | def _rotate3D(self, img_tuples):img_kwargs = {}# random flip in z directionflip_z = self._flipz_3D and np.random.rand() < 0.5for i, img in enumerate(img_tuples):for j in range(self._depth3D):for k in range(len(img)):if flip_z:z_idx = self._depth3D - 1 - jelse:z_idx = jimg_kwargs[f"img{i}_{z_idx}_{k}"] = img[k, j]keys =... | 12 | 40 | 2 | 264 | 0 | 704 | 746 | 704 | self,img_tuples | [] | Returns | {"Assign": 9, "Expr": 4, "For": 5, "If": 2, "Return": 1} | 21 | 43 | 21 | ["np.random.rand", "enumerate", "range", "range", "len", "list", "img_kwargs.keys", "self._rotation_transform.add_targets", "self._rotation_transform", "enumerate", "len", "rotated_img_tuples.append", "np.concatenate", "range", "range", "len", "temp_arr.append", "np.concatenate", "range", "rotated_img_tuples.append", "... | 0 | [] | The function (_rotate3D) defined within the public class called MultiChDloaderRef.The function start at line 704 and ends at 746. It contains 40 lines of code and it has a cyclomatic complexity of 12. It takes 2 parameters, represented as [704.0], and this function return a value. It declares 21.0 functions, and It ha... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _rotate | def _rotate(self, img_tuples, noise_tuples):if self._3Ddata:return self._rotate3D(img_tuples, noise_tuples)else:return self._rotate2D(img_tuples, noise_tuples) | 2 | 5 | 3 | 34 | 0 | 748 | 753 | 748 | self,img_tuples,noise_tuples | [] | Returns | {"If": 1, "Return": 2} | 2 | 6 | 2 | ["self._rotate3D", "self._rotate2D"] | 0 | [] | The function (_rotate) defined within the public class called MultiChDloaderRef.The function start at line 748 and ends at 753. It contains 5 lines of code and it has a cyclomatic complexity of 2. It takes 3 parameters, represented as [748.0], and this function return a value. It declares 2.0 functions, and It has 2.0... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _get_img | def _get_img(self, ch_idx: int, patch_idx: int):"""Loads an image.Crops the image such that cropped image has content."""img = self._load_img(ch_idx, patch_idx)cropped_img = self._crop_imgs(ch_idx, patch_idx, img)return cropped_img | 1 | 4 | 3 | 38 | 0 | 755 | 762 | 755 | self,ch_idx,patch_idx | [] | Returns | {"Assign": 2, "Expr": 1, "Return": 1} | 2 | 8 | 2 | ["self._load_img", "self._crop_imgs"] | 0 | [] | The function (_get_img) defined within the public class called MultiChDloaderRef.The function start at line 755 and ends at 762. It contains 4 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [755.0], and this function return a value. It declares 2.0 functions, and It has 2.... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | get_uncorrelated_img_tuples | def get_uncorrelated_img_tuples(self, index):"""Content of channels like actin and nuclei is "correlated" in itsrespective location, this function allows to pick channels' contentfrom different patches of the image to make it "uncorrelated"."""img_tuples = []for ch_idx in range(len(self._data)):if ch_idx == 0:# dataset... | 3 | 11 | 2 | 82 | 0 | 764 | 782 | 764 | self,index | [] | Returns | {"Assign": 2, "Expr": 3, "For": 1, "If": 1, "Return": 1} | 8 | 19 | 8 | ["range", "len", "img_tuples.append", "self._get_img", "np.random.randint", "self.idx_manager.total_grid_count", "img_tuples.append", "self._get_img"] | 0 | [] | The function (get_uncorrelated_img_tuples) defined within the public class called MultiChDloaderRef.The function start at line 764 and ends at 782. It contains 11 lines of code and it has a cyclomatic complexity of 3. It takes 2 parameters, represented as [764.0], and this function return a value. It declares 8.0 funct... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | __getitem__ | def __getitem__(self, index: Union[int, tuple[int, int]]) -> tuple[np.ndarray, np.ndarray]:# Uncorrelated channels means crops to create the input are taken from different# spatial locations of the image.if (self._uncorrelated_channelsand np.random.rand() < self._uncorrelated_channel_probab):input_tuples = self.get_unc... | 4 | 16 | 2 | 117 | 0 | 784 | 810 | 784 | self,index | [] | tuple[np.ndarray, np.ndarray] | {"Assign": 6, "If": 2, "Return": 1} | 7 | 27 | 7 | ["np.random.rand", "self.get_uncorrelated_img_tuples", "self._get_img", "self._rotate", "self._compute_input", "self._compute_target", "self.normalize_target"] | 30 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3535398_idsia_brainstorm.brainstorm.structure.buffer_views_py.BufferView.__getitem__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3573634_xray7224_pypump.pypump.models.feed_py.Lists.__getitem__", "_.content.gdriv... | The function (__getitem__) defined within the public class called MultiChDloaderRef.The function start at line 784 and ends at 810. It contains 16 lines of code and it has a cyclomatic complexity of 4. It takes 2 parameters, represented as [784.0] and does not return any value. It declares 7.0 functions, It has 7.0 fun... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | __init__ | def __init__(self,data_config: MicroSplitDataConfig,fpath: str,load_data_fn: Callable,val_fraction=None,test_fraction=None,):self._padding_kwargs = (data_config.padding_kwargs# mode=padding_mode, constant_values=constant_value)self._uncorrelated_channel_probab = data_config.uncorrelated_channel_probabsuper().__init__(d... | 5 | 53 | 6 | 323 | 0 | 814 | 875 | 814 | self,data_config,fpath,load_data_fn,val_fraction,test_fraction | [] | None | {"Assign": 45, "Expr": 5, "If": 5, "Try": 1} | 10 | 128 | 10 | ["Path", "self.load_data", "self.get_data_shapes", "print", "self.set_img_sz", "EmptyPatchFetcher", "self.rm_bkground_set_max_val_and_upperclip_data", "A.Compose", "A.Flip", "A.RandomRotate90"] | 8,182 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.15197461_googleapis_python_cloud_core.google.cloud._helpers.__init___py._LocalStack.__init__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.16798231_kapji_capital_gains_calculator.cgt_calc.exceptions_py.AmountMissi... | The function (__init__) defined within the public class called MultiChDloaderRef.The function start at line 814 and ends at 875. It contains 53 lines of code and it has a cyclomatic complexity of 5. It takes 6 parameters, represented as [814.0] and does not return any value. It declares 10.0 functions, It has 10.0 func... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | reduce_data | def reduce_data(self, t_list=None, h_start=None, h_end=None, w_start=None, w_end=None):assert t_list is not Noneassert h_start is Noneassert h_end is Noneassert w_start is Noneassert w_end is Noneself._data = self._data[t_list].copy()self._scaled_data = [self._scaled_data[i][t_list].copy() for i in range(len(self._scal... | 4 | 23 | 6 | 175 | 0 | 877 | 903 | 877 | self,t_list,z_start,z_end,h_start,h_end,w_start,w_end | [] | None | {} | 1 | 11 | 1 | ["NotImplementedError"] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.78400723_sagemath_sagetrac_mirror.src.sage.rings.finite_rings.finite_field_pari_ffelt_py.FiniteField_pari_ffelt.__reduce__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.78400723_sagemath_sagetrac_mirror.src.sage.r... | The function (reduce_data) defined within the public class called MultiChDloaderRef.The function start at line 877 and ends at 903. It contains 23 lines of code and it has a cyclomatic complexity of 4. It takes 6 parameters, represented as [877.0] and does not return any value. It declare 1.0 function, It has 1.0 funct... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _init_msg | def _init_msg(self):msg = super()._init_msg()msg += f" Pad:{self._padding_kwargs}"if self._uncorrelated_channels:msg += f" UncorrChProbab:{self._uncorrelated_channel_probab}"return msg | 2 | 6 | 1 | 29 | 0 | 905 | 910 | 905 | self | [] | Returns | {"Assign": 3, "AugAssign": 13, "If": 7, "Return": 1} | 7 | 38 | 7 | ["int", "self.idx_manager.get_individual_dim_grid_count", "range", "len", "join", "str", "self.idx_manager.total_grid_count"] | 2 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.lc_dataset_py.LCMultiChDloader._init_msg", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.data... | The function (_init_msg) defined within the public class called MultiChDloaderRef.The function start at line 905 and ends at 910. It contains 6 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It declares 7.0 functions, It has 7.0 functi... |
CAREamics_careamics | LCMultiChDloaderRef | public | 0 | 1 | _load_scaled_img | def _load_scaled_img(self, scaled_index, index: Union[int, tuple[int, int]]) -> tuple[np.ndarray, np.ndarray]:if isinstance(index, int):idx = indexelse:idx, _ = index# tidx = self.idx_manager.get_t(idx)patch_loc_list = self.idx_manager.get_patch_location_from_dataset_idx(idx)nidx = patch_loc_list[0]imgs = self._scaled_... | 7 | 17 | 3 | 189 | 0 | 912 | 931 | 912 | self,scaled_index,index | [] | tuple[np.ndarray, np.ndarray] | {"Assign": 10, "If": 2, "Return": 1} | 8 | 20 | 8 | ["isinstance", "self.idx_manager.get_patch_location_from_dataset_idx", "tuple", "range", "tuple", "range", "np.sqrt", "tuple"] | 0 | [] | The function (_load_scaled_img) defined within the public class called LCMultiChDloaderRef, that inherit another class.The function start at line 912 and ends at 931. It contains 17 lines of code and it has a cyclomatic complexity of 7. It takes 3 parameters, represented as [912.0] and does not return any value. It dec... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _crop_img | def _crop_img(self, img: np.ndarray, patch_start_loc: tuple):"""Here, h_start, w_start could be negative. That simply means we need to pick the content from 0. So,the cropped image will be smaller than self._img_sz * self._img_sz"""max_len_vals = list(self.idx_manager.data_shape[1:-1])max_len_vals[-2:] = img.shape[-2:]... | 1 | 6 | 3 | 60 | 0 | 933 | 942 | 933 | self,img,patch_start_loc | [] | Returns | {"Assign": 7, "If": 2, "Return": 2} | 2 | 23 | 2 | ["np.array", "self._crop_img_with_padding"] | 0 | [] | The function (_crop_img) defined within the public class called MultiChDloaderRef.The function start at line 933 and ends at 942. It contains 6 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [933.0], and this function return a value. It declares 2.0 functions, and It has 2... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | _get_img | def _get_img(self, index: int):"""Returns the primary patch along with low resolution patches centered on the primary patch."""# Noise_tuples is populated when there is synthetic noise in training# Should have similar type of noise with the noise model# Starting with microsplit, dump the noise, use it instead as an aug... | 10 | 47 | 2 | 330 | 0 | 944 | 1,002 | 944 | self,ch_idx,patch_idx | [] | Returns | {"Assign": 2, "Expr": 1, "Return": 1} | 2 | 8 | 2 | ["self._load_img", "self._crop_imgs"] | 0 | [] | The function (_get_img) defined within the public class called MultiChDloaderRef.The function start at line 944 and ends at 1002. It contains 47 lines of code and it has a cyclomatic complexity of 10. It takes 2 parameters, represented as [944.0], and this function return a value. It declares 2.0 functions, and It has... |
CAREamics_careamics | MultiChDloaderRef | public | 0 | 0 | __getitem__ | def __getitem__(self, index: Union[int, tuple[int, int]]):img_tuples, noise_tuples = self._get_img(index)if self._uncorrelated_channels:assert (self._input_idx is None), "Uncorrelated channels is not implemented when there is a separate input channel."if np.random.rand() < self._uncorrelated_channel_probab:img_tuples_n... | 16 | 47 | 2 | 359 | 0 | 1,004 | 1,067 | 1,004 | self,index | [] | tuple[np.ndarray, np.ndarray] | {"Assign": 6, "If": 2, "Return": 1} | 7 | 27 | 7 | ["np.random.rand", "self.get_uncorrelated_img_tuples", "self._get_img", "self._rotate", "self._compute_input", "self._compute_target", "self.normalize_target"] | 30 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3535398_idsia_brainstorm.brainstorm.structure.buffer_views_py.BufferView.__getitem__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3573634_xray7224_pypump.pypump.models.feed_py.Lists.__getitem__", "_.content.gdriv... | The function (__getitem__) defined within the public class called MultiChDloaderRef.The function start at line 1004 and ends at 1067. It contains 47 lines of code and it has a cyclomatic complexity of 16. It takes 2 parameters, represented as [1004.0] and does not return any value. It declares 7.0 functions, It has 7.0... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | __init__ | def __init__(self,data_config: MicroSplitDataConfig,datapath: Union[str, Path],load_data_fn: Optional[Callable] = None,val_fraction: float = 0.1,test_fraction: float = 0.1,allow_generation: bool = False,):""" """self._data_type = data_config.data_typeself._fpath = datapathself._data = self._noise_data = Noneself.Z = 1s... | 16 | 117 | 7 | 670 | 0 | 22 | 175 | 22 | self,data_config,datapath,load_data_fn,val_fraction,test_fraction,allow_generation | [] | None | {"Assign": 55, "Expr": 6, "If": 8, "Try": 1} | 10 | 154 | 10 | ["self.load_data", "print", "self.set_img_sz", "IndexSwitcher", "self.set_img_sz", "EmptyPatchFetcher", "self.rm_bkground_set_max_val_and_upperclip_data", "A.Compose", "A.Flip", "A.RandomRotate90"] | 8,182 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.15197461_googleapis_python_cloud_core.google.cloud._helpers.__init___py._LocalStack.__init__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.16798231_kapji_capital_gains_calculator.cgt_calc.exceptions_py.AmountMissi... | The function (__init__) defined within the public class called MultiChDloader, that inherit another class.The function start at line 22 and ends at 175. It contains 117 lines of code and it has a cyclomatic complexity of 16. It takes 7 parameters, represented as [22.0] and does not return any value. It declares 10.0 fu... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | disable_noise | def disable_noise(self):assert (self._poisson_noise_factor is None), "This is not supported. Poisson noise is added to the data itself and so the noise cannot be disabled."self._disable_noise = True | 1 | 5 | 1 | 20 | 0 | 182 | 186 | 182 | self | [] | None | {"Assign": 1} | 0 | 5 | 0 | [] | 0 | [] | The function (disable_noise) defined within the public class called MultiChDloader, that inherit another class.The function start at line 182 and ends at 186. It contains 5 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters and does not return any value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | enable_noise | def enable_noise(self):self._disable_noise = False | 1 | 2 | 1 | 10 | 0 | 188 | 189 | 188 | self | [] | None | {"Assign": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (enable_noise) defined within the public class called MultiChDloader, that inherit another class.The function start at line 188 and ends at 189. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters and does not return any value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_data_shape | def get_data_shape(self):return self._data.shape | 1 | 2 | 1 | 11 | 0 | 191 | 192 | 191 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (get_data_shape) defined within the public class called MultiChDloader, that inherit another class.The function start at line 191 and ends at 192. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | load_data | def load_data(self,data_config,datasplit_type,load_data_fn: Callable,val_fraction=None,test_fraction=None,allow_generation=None,):self._data = load_data_fn(data_config,self._fpath,datasplit_type,val_fraction=val_fraction,test_fraction=test_fraction,allow_generation=allow_generation,)self._loaded_data_preprocessing(data... | 1 | 18 | 7 | 59 | 0 | 194 | 211 | 194 | self,data_config,datasplit_type,load_data_fn,val_fraction,test_fraction,allow_generation | [] | None | {"Assign": 1, "Expr": 1} | 2 | 18 | 2 | ["load_data_fn", "self._loaded_data_preprocessing"] | 12 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3919742_opendatacube_datacube_stats.datacube_stats.main_py.load_process_save_chunk", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3959435_kscsdk_ksc_sdk_python.kscore.session_py.Session.get_data", "_.content.gdrive... | The function (load_data) defined within the public class called MultiChDloader, that inherit another class.The function start at line 194 and ends at 211. It contains 18 lines of code and it has a cyclomatic complexity of 1. It takes 7 parameters, represented as [194.0] and does not return any value. It declares 2.0 fu... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _loaded_data_preprocessing | def _loaded_data_preprocessing(self, data_config):old_shape = self._data.shapeif self._datausage_fraction < 1.0:framepixelcount = np.prod(self._data.shape[1:3])pixelcount = int(len(self._data) * framepixelcount * self._datausage_fraction)frame_count = int(np.ceil(pixelcount / framepixelcount))last_frame_reduced_size, _... | 10 | 48 | 2 | 373 | 0 | 213 | 267 | 213 | self,data_config | [] | None | {"Assign": 17, "AugAssign": 3, "Expr": 2, "If": 9} | 15 | 55 | 15 | ["np.prod", "int", "len", "int", "np.ceil", "IndexSwitcher.get_reduced_frame_size", "copy", "copy", "print", "np.random.poisson", "np.random.normal", "np.mean", "print", "len", "self._data.reshape"] | 0 | [] | The function (_loaded_data_preprocessing) defined within the public class called MultiChDloader, that inherit another class.The function start at line 213 and ends at 267. It contains 48 lines of code and it has a cyclomatic complexity of 10. It takes 2 parameters, represented as [213.0] and does not return any value. ... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | save_background | def save_background(self, channel_idx, frame_idx, background_value):self._background_values[frame_idx, channel_idx] = background_value | 1 | 2 | 4 | 21 | 0 | 269 | 270 | 269 | self,channel_idx,frame_idx,background_value | [] | None | {"Assign": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (save_background) defined within the public class called MultiChDloader, that inherit another class.The function start at line 269 and ends at 270. It contains 2 lines of code and it has a cyclomatic complexity of 1. It takes 4 parameters, represented as [269.0] and does not return any value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_background | def get_background(self, channel_idx, frame_idx):return self._background_values[frame_idx, channel_idx] | 1 | 2 | 3 | 18 | 0 | 272 | 273 | 272 | self,channel_idx,frame_idx | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (get_background) defined within the public class called MultiChDloader, that inherit another class.The function start at line 272 and ends at 273. It contains 2 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [272.0], and this function return a value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | remove_background | def remove_background(self):self._background_values = np.zeros((self._data.shape[0], self._data.shape[-1]))if self._background_quantile == 0.0:assert (self._clip_background_noise_to_zero is False), "This operation currently happens later in this function."returnif self._data.dtype in [np.uint16]:# unsigned integer crea... | 6 | 20 | 1 | 191 | 0 | 275 | 301 | 275 | self | [] | None | {"Assign": 5, "AugAssign": 1, "Expr": 1, "For": 2, "If": 3, "Return": 1} | 8 | 27 | 8 | ["np.zeros", "self._data.astype", "range", "range", "np.quantile", "np.abs", "int", "self.save_background"] | 0 | [] | The function (remove_background) defined within the public class called MultiChDloader, that inherit another class.The function start at line 275 and ends at 301. It contains 20 lines of code and it has a cyclomatic complexity of 6. The function does not take any parameters and does not return any value. It declares 8.... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | rm_bkground_set_max_val_and_upperclip_data | def rm_bkground_set_max_val_and_upperclip_data(self, max_val, datasplit_type):self.remove_background()self.set_max_val(max_val, datasplit_type)self.upperclip_data() | 1 | 4 | 3 | 27 | 0 | 303 | 306 | 303 | self,max_val,datasplit_type | [] | None | {"Expr": 3} | 3 | 4 | 3 | ["self.remove_background", "self.set_max_val", "self.upperclip_data"] | 0 | [] | The function (rm_bkground_set_max_val_and_upperclip_data) defined within the public class called MultiChDloader, that inherit another class.The function start at line 303 and ends at 306. It contains 4 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [303.0] and does not retu... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | upperclip_data | def upperclip_data(self):if isinstance(self.max_val, list):chN = self._data.shape[-1]assert chN == len(self.max_val)for ch in range(chN):ch_data = self._data[..., ch]ch_q = self.max_val[ch]ch_data[ch_data > ch_q] = ch_qself._data[..., ch] = ch_dataelse:self._data[self._data > self.max_val] = self.max_val | 3 | 11 | 1 | 97 | 0 | 308 | 318 | 308 | self | [] | None | {"Assign": 6, "For": 1, "If": 1} | 3 | 11 | 3 | ["isinstance", "len", "range"] | 0 | [] | The function (upperclip_data) defined within the public class called MultiChDloader, that inherit another class.The function start at line 308 and ends at 318. It contains 11 lines of code and it has a cyclomatic complexity of 3. The function does not take any parameters and does not return any value. It declares 3.0 f... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | compute_max_val | def compute_max_val(self):if self._channelwise_quantile:max_val_arr = [np.quantile(self._data[..., i], self._quantile)for i in range(self._data.shape[-1])]return max_val_arrelse:return np.quantile(self._data, self._quantile) | 3 | 9 | 1 | 63 | 0 | 320 | 328 | 320 | self | [] | Returns | {"Assign": 1, "If": 1, "Return": 2} | 3 | 9 | 3 | ["np.quantile", "range", "np.quantile"] | 0 | [] | The function (compute_max_val) defined within the public class called MultiChDloader, that inherit another class.The function start at line 320 and ends at 328. It contains 9 lines of code and it has a cyclomatic complexity of 3. The function does not take any parameters, and this function return a value. It declares 3... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | set_max_val | def set_max_val(self, max_val, datasplit_type):if max_val is None:assert datasplit_type == DataSplitType.Trainself.max_val = self.compute_max_val()else:assert max_val is not Noneself.max_val = max_val | 2 | 7 | 3 | 41 | 0 | 330 | 337 | 330 | self,max_val,datasplit_type | [] | None | {"Assign": 2, "If": 1} | 1 | 8 | 1 | ["self.compute_max_val"] | 0 | [] | The function (set_max_val) defined within the public class called MultiChDloader, that inherit another class.The function start at line 330 and ends at 337. It contains 7 lines of code and it has a cyclomatic complexity of 2. It takes 3 parameters, represented as [330.0] and does not return any value. It declare 1.0 fu... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_max_val | def get_max_val(self):return self.max_val | 1 | 2 | 1 | 9 | 0 | 339 | 340 | 339 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 1 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.multifile_dataset_py.MultiFileDset.get_max_val"] | The function (get_max_val) defined within the public class called MultiChDloader, that inherit another class.The function start at line 339 and ends at 340. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It has 1.0 functi... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_img_sz | def get_img_sz(self):return self._img_sz | 1 | 2 | 1 | 9 | 0 | 342 | 343 | 342 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 1 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.multifile_dataset_py.MultiFileDset.get_img_sz"] | The function (get_img_sz) defined within the public class called MultiChDloader, that inherit another class.The function start at line 342 and ends at 343. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It has 1.0 functio... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_num_frames | def get_num_frames(self):return self._data.shape[0] | 1 | 2 | 1 | 14 | 0 | 345 | 346 | 345 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (get_num_frames) defined within the public class called MultiChDloader, that inherit another class.The function start at line 345 and ends at 346. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | reduce_data | def reduce_data(self,t_list=None,z_start=None,z_end=None,h_start=None,h_end=None,w_start=None,w_end=None,):if self._5Ddata:if t_list is None:t_list = list(range(self._data.shape[0]))if z_start is None:z_start = 0if z_end is None:z_end = self._data.shape[1]if h_start is None:h_start = 0if h_end is None:h_end = self._dat... | 16 | 52 | 8 | 341 | 0 | 348 | 401 | 348 | self,t_list,z_start,z_end,h_start,h_end,w_start,w_end | [] | None | {"Assign": 16, "Expr": 2, "If": 15} | 10 | 54 | 10 | ["list", "range", "copy", "copy", "list", "range", "copy", "copy", "self.set_img_sz", "print"] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.78400723_sagemath_sagetrac_mirror.src.sage.rings.finite_rings.finite_field_pari_ffelt_py.FiniteField_pari_ffelt.__reduce__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.78400723_sagemath_sagetrac_mirror.src.sage.r... | The function (reduce_data) defined within the public class called MultiChDloader, that inherit another class.The function start at line 348 and ends at 401. It contains 52 lines of code and it has a cyclomatic complexity of 16. It takes 8 parameters, represented as [348.0] and does not return any value. It declares 10.... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_idx_manager_shapes | def get_idx_manager_shapes(self, patch_size: int, grid_size: Union[int, tuple[int, int, int]]):numC = self._data.shape[-1]if self._5Ddata:patch_shape = (1, self._depth3D, patch_size, patch_size, numC)if isinstance(grid_size, int):grid_shape = (1, 1, grid_size, grid_size, numC)else:assert len(grid_size) == 3assert all([... | 4 | 19 | 3 | 172 | 0 | 403 | 422 | 403 | self,patch_size,grid_size | [] | Returns | {"Assign": 6, "If": 2, "Return": 1} | 5 | 20 | 5 | ["isinstance", "len", "all", "zip", "isinstance"] | 0 | [] | The function (get_idx_manager_shapes) defined within the public class called MultiChDloader, that inherit another class.The function start at line 403 and ends at 422. It contains 19 lines of code and it has a cyclomatic complexity of 4. It takes 3 parameters, represented as [403.0], and this function return a value. I... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | set_img_sz | def set_img_sz(self, image_size, grid_size: Union[int, tuple[int, int, int]]):"""If one wants to change the image size on the go, then this can be used.Args:image_size: size of one patchgrid_size: frame is divided into square grids of this size. A patch centered on a grid having size `image_size` is returned."""# hacky... | 1 | 10 | 3 | 77 | 0 | 424 | 441 | 424 | self,image_size,grid_size | [] | None | {"Assign": 5, "Expr": 1} | 2 | 18 | 2 | ["self.get_idx_manager_shapes", "GridIndexManager"] | 0 | [] | The function (set_img_sz) defined within the public class called MultiChDloader, that inherit another class.The function start at line 424 and ends at 441. It contains 10 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [424.0] and does not return any value. It declares 2.0 f... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | __len__ | def __len__(self):# Vera: N is the number of frames in Z stack# Repeat factor is n_rows * n_colsreturn self.idx_manager.total_grid_count() | 1 | 2 | 1 | 13 | 0 | 444 | 447 | 444 | self | [] | Returns | {"Return": 1} | 1 | 4 | 1 | ["self.idx_manager.total_grid_count"] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3576232_vmware_liota.packages.examples.kura.kura_integrate_iotcc_py.sub_callback", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3665918_alvinwan_neural_backed_decision_trees.nbdt.data.imagenet_py._TinyImagenet200Va... | The function (__len__) defined within the public class called MultiChDloader, that inherit another class.The function start at line 444 and ends at 447. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It declare 1.0 functi... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | set_repeat_factor | def set_repeat_factor(self):if self._grid_sz > 1:self._repeat_factor = self.idx_manager.grid_rows(self._grid_sz) * self.idx_manager.grid_cols(self._grid_sz)else:self._repeat_factor = self.idx_manager.grid_rows(self._img_sz) * self.idx_manager.grid_cols(self._img_sz) | 2 | 9 | 1 | 64 | 0 | 449 | 457 | 449 | self | [] | None | {"Assign": 2, "If": 1} | 4 | 9 | 4 | ["self.idx_manager.grid_rows", "self.idx_manager.grid_cols", "self.idx_manager.grid_rows", "self.idx_manager.grid_cols"] | 0 | [] | The function (set_repeat_factor) defined within the public class called MultiChDloader, that inherit another class.The function start at line 449 and ends at 457. It contains 9 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters and does not return any value. It declares 4.0... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _init_msg | def _init_msg(self,):msg = (f"[{self.__class__.__name__}] Train:{int(self._is_train)} Sz:{self._img_sz}")dim_sizes = [self.idx_manager.get_individual_dim_grid_count(dim)for dim in range(len(self._data.shape))]dim_sizes = ",".join([str(x) for x in dim_sizes])msg += f" N:{self.N} NumPatchPerN:{self._repeat_factor}"msg +=... | 10 | 32 | 1 | 151 | 0 | 459 | 496 | 459 | self | [] | Returns | {"Assign": 3, "AugAssign": 13, "If": 7, "Return": 1} | 7 | 38 | 7 | ["int", "self.idx_manager.get_individual_dim_grid_count", "range", "len", "join", "str", "self.idx_manager.total_grid_count"] | 2 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.lc_dataset_py.LCMultiChDloader._init_msg", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.data... | The function (_init_msg) defined within the public class called MultiChDloader, that inherit another class.The function start at line 459 and ends at 496. It contains 32 lines of code and it has a cyclomatic complexity of 10. The function does not take any parameters, and this function return a value. It declares 7.0 f... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _crop_imgs | def _crop_imgs(self, index, *img_tuples: np.ndarray):h, w = img_tuples[0].shape[-2:]if self._img_sz is None:return (*img_tuples,{"h": [0, h], "w": [0, w], "hflip": False, "wflip": False},)if self._enable_random_cropping:patch_start_loc = self._get_random_hw(h, w)if self._5Ddata:patch_start_loc = (np.random.choice(1 + i... | 5 | 26 | 3 | 177 | 0 | 498 | 526 | 498 | self,index,*img_tuples | [] | Returns | {"Assign": 6, "Expr": 1, "For": 1, "If": 3, "Return": 2} | 6 | 29 | 6 | ["self._get_random_hw", "np.random.choice", "self._get_deterministic_loc", "self._crop_flip_img", "cropped_imgs.append", "tuple"] | 0 | [] | The function (_crop_imgs) defined within the public class called MultiChDloader, that inherit another class.The function start at line 498 and ends at 526. It contains 26 lines of code and it has a cyclomatic complexity of 5. It takes 3 parameters, represented as [498.0], and this function return a value. It declares 6... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _crop_img | def _crop_img(self, img: np.ndarray, patch_start_loc: tuple):if self._tiling_mode in [TilingMode.TrimBoundary, TilingMode.ShiftBoundary]:# In training, this is used.# NOTE: It is my opinion that if I just use self._crop_img_with_padding, it will work perfectly fine.# The only benefit this if else loop provides is that ... | 3 | 17 | 3 | 134 | 0 | 528 | 550 | 528 | self,img,patch_start_loc | [] | Returns | {"Assign": 7, "If": 2, "Return": 2} | 2 | 23 | 2 | ["np.array", "self._crop_img_with_padding"] | 0 | [] | The function (_crop_img) defined within the public class called MultiChDloader, that inherit another class.The function start at line 528 and ends at 550. It contains 17 lines of code and it has a cyclomatic complexity of 3. It takes 3 parameters, represented as [528.0], and this function return a value. It declares 2.... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_begin_end_padding | def get_begin_end_padding(self, start_pos, end_pos, max_len):"""The effect is that the image with size self._grid_sz is in the center of the patch with sufficientpadding on all four sides so that the final patch size is self._img_sz."""pad_start = 0pad_end = 0if start_pos < 0:pad_start = -1 * start_pospad_end = max(0, ... | 2 | 7 | 4 | 43 | 0 | 552 | 564 | 552 | self,start_pos,end_pos,max_len | [] | Returns | {"Assign": 4, "Expr": 1, "If": 1, "Return": 1} | 1 | 13 | 1 | ["max"] | 0 | [] | The function (get_begin_end_padding) defined within the public class called MultiChDloader, that inherit another class.The function start at line 552 and ends at 564. It contains 7 lines of code and it has a cyclomatic complexity of 2. It takes 4 parameters, represented as [552.0], and this function return a value. It ... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _crop_img_with_padding | def _crop_img_with_padding(self, img: np.ndarray, patch_start_loc, max_len_vals=None):if max_len_vals is None:max_len_vals = self.idx_manager.data_shape[1:-1]patch_end_loc = np.array(patch_start_loc, dtype=int) + np.array(self.idx_manager.patch_shape[1:-1], dtype=int)boundary_crossed = []valid_slice = []padding = [[0, ... | 7 | 36 | 4 | 294 | 0 | 566 | 606 | 566 | self,img,patch_start_loc,max_len_vals | [] | Returns | {"Assign": 10, "Expr": 3, "For": 1, "If": 4, "Return": 1} | 11 | 41 | 11 | ["np.array", "np.array", "zip", "boundary_crossed.append", "valid_slice.append", "max", "min", "self.get_begin_end_padding", "padding.append", "np.all", "np.pad"] | 0 | [] | The function (_crop_img_with_padding) defined within the public class called MultiChDloader, that inherit another class.The function start at line 566 and ends at 606. It contains 36 lines of code and it has a cyclomatic complexity of 7. It takes 4 parameters, represented as [566.0], and this function return a value. I... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _crop_flip_img | def _crop_flip_img(self, img: np.ndarray, patch_start_loc: tuple, h_flip: bool, w_flip: bool):new_img = self._crop_img(img, patch_start_loc)if h_flip:new_img = new_img[..., ::-1, :]if w_flip:new_img = new_img[..., :, ::-1]return new_img.astype(np.float32) | 3 | 9 | 5 | 72 | 0 | 608 | 617 | 608 | self,img,patch_start_loc,h_flip,w_flip | [] | Returns | {"Assign": 3, "If": 2, "Return": 1} | 2 | 10 | 2 | ["self._crop_img", "new_img.astype"] | 0 | [] | The function (_crop_flip_img) defined within the public class called MultiChDloader, that inherit another class.The function start at line 608 and ends at 617. It contains 9 lines of code and it has a cyclomatic complexity of 3. It takes 5 parameters, represented as [608.0], and this function return a value. It declare... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _load_img | def _load_img(self, index: Union[int, tuple[int, int]]) -> tuple[np.ndarray, np.ndarray]:"""Returns the channels and also the respective noise channels."""if isinstance(index, int) or isinstance(index, np.int64):idx = indexelse:idx = index[0]patch_loc_list = self.idx_manager.get_patch_location_from_dataset_idx(idx)imgs... | 7 | 17 | 2 | 167 | 0 | 619 | 647 | 619 | self,index | [] | tuple[np.ndarray, np.ndarray] | {"Assign": 7, "Expr": 1, "If": 2, "Return": 1} | 7 | 29 | 7 | ["isinstance", "isinstance", "self.idx_manager.get_patch_location_from_dataset_idx", "range", "range", "tuple", "tuple"] | 0 | [] | The function (_load_img) defined within the public class called MultiChDloader, that inherit another class.The function start at line 619 and ends at 647. It contains 17 lines of code and it has a cyclomatic complexity of 7. It takes 2 parameters, represented as [619.0] and does not return any value. It declares 7.0 fu... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_mean_std | def get_mean_std(self):return self._mean, self._std | 1 | 2 | 1 | 13 | 0 | 649 | 650 | 649 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 1 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.multifile_dataset_py.MultiFileDset.get_mean_std"] | The function (get_mean_std) defined within the public class called MultiChDloader, that inherit another class.The function start at line 649 and ends at 650. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It has 1.0 funct... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | set_mean_std | def set_mean_std(self, mean_val, std_val):self._mean = mean_valself._std = std_val | 1 | 3 | 3 | 19 | 0 | 652 | 654 | 652 | self,mean_val,std_val | [] | None | {"Assign": 2} | 0 | 3 | 0 | [] | 0 | [] | The function (set_mean_std) defined within the public class called MultiChDloader, that inherit another class.The function start at line 652 and ends at 654. It contains 3 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [652.0] and does not return any value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | normalize_img | def normalize_img(self, *img_tuples):mean, std = self.get_mean_std()mean = mean["target"]std = std["target"]mean = mean.squeeze()std = std.squeeze()normalized_imgs = []for i, img in enumerate(img_tuples):img = (img - mean[i]) / std[i]normalized_imgs.append(img)return tuple(normalized_imgs) | 2 | 11 | 2 | 83 | 0 | 656 | 666 | 656 | self,*img_tuples | [] | Returns | {"Assign": 7, "Expr": 1, "For": 1, "Return": 1} | 6 | 11 | 6 | ["self.get_mean_std", "mean.squeeze", "std.squeeze", "enumerate", "normalized_imgs.append", "tuple"] | 0 | [] | The function (normalize_img) defined within the public class called MultiChDloader, that inherit another class.The function start at line 656 and ends at 666. It contains 11 lines of code and it has a cyclomatic complexity of 2. It takes 2 parameters, represented as [656.0], and this function return a value. It declare... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | normalize_input | def normalize_input(self, x):mean_dict, std_dict = self.get_mean_std()mean_ = mean_dict["input"].mean()std_ = std_dict["input"].mean()return (x - mean_) / std_ | 1 | 5 | 2 | 44 | 0 | 668 | 672 | 668 | self,x | [] | Returns | {"Assign": 3, "Return": 1} | 3 | 5 | 3 | ["self.get_mean_std", "mean", "mean"] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3719451_ethereum_pyrlp.tests.core.test_json_py.normalize_input", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.70555013_embeddings_benchmark_mteb.mteb.models.jina_models_py.JinaV4Wrapper.score_single_vector", "_.con... | The function (normalize_input) defined within the public class called MultiChDloader, that inherit another class.The function start at line 668 and ends at 672. It contains 5 lines of code and it has a cyclomatic complexity of 1. It takes 2 parameters, represented as [668.0], and this function return a value. It declar... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | normalize_target | def normalize_target(self, target):mean_dict, std_dict = self.get_mean_std()mean_ = mean_dict["target"].squeeze(0)std_ = std_dict["target"].squeeze(0)return (target - mean_) / std_ | 1 | 5 | 2 | 46 | 0 | 674 | 678 | 674 | self,target | [] | Returns | {"Assign": 3, "Return": 1} | 3 | 5 | 3 | ["self.get_mean_std", "squeeze", "squeeze"] | 0 | [] | The function (normalize_target) defined within the public class called MultiChDloader, that inherit another class.The function start at line 674 and ends at 678. It contains 5 lines of code and it has a cyclomatic complexity of 1. It takes 2 parameters, represented as [674.0], and this function return a value. It decla... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_grid_size | def get_grid_size(self):return self._grid_sz | 1 | 2 | 1 | 9 | 0 | 680 | 681 | 680 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (get_grid_size) defined within the public class called MultiChDloader, that inherit another class.The function start at line 680 and ends at 681. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_idx_manager | def get_idx_manager(self):return self.idx_manager | 1 | 2 | 1 | 9 | 0 | 683 | 684 | 683 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (get_idx_manager) defined within the public class called MultiChDloader, that inherit another class.The function start at line 683 and ends at 684. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | per_side_overlap_pixelcount | def per_side_overlap_pixelcount(self):return (self._img_sz - self._grid_sz) // 2 | 1 | 2 | 1 | 16 | 0 | 686 | 687 | 686 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (per_side_overlap_pixelcount) defined within the public class called MultiChDloader, that inherit another class.The function start at line 686 and ends at 687. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value.. |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _get_deterministic_loc | def _get_deterministic_loc(self, index: int):"""It returns the top-left corner of the patch corresponding to index."""loc_list = self.idx_manager.get_patch_location_from_dataset_idx(index)# last dim is channel. we need to take the third and the second last element.return loc_list[1:-1] | 1 | 3 | 2 | 28 | 0 | 692 | 698 | 692 | self,index | [] | Returns | {"Assign": 1, "Expr": 1, "Return": 1} | 1 | 7 | 1 | ["self.idx_manager.get_patch_location_from_dataset_idx"] | 0 | [] | The function (_get_deterministic_loc) defined within the public class called MultiChDloader, that inherit another class.The function start at line 692 and ends at 698. It contains 3 lines of code and it has a cyclomatic complexity of 1. It takes 2 parameters, represented as [692.0], and this function return a value. It... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | compute_individual_mean_std | def compute_individual_mean_std(self):# numpy 1.19.2 has issues in computing for large arrays. https://github.com/numpy/numpy/issues/8869# mean = np.mean(self._data, axis=(0, 1, 2))# std = np.std(self._data, axis=(0, 1, 2))mean_arr = []std_arr = []for ch_idx in range(self._data.shape[-1]):mean_ = (0.0if self._skip_norm... | 5 | 24 | 1 | 187 | 0 | 700 | 729 | 700 | self | [] | Returns | {"Assign": 7, "Expr": 2, "For": 1, "If": 2, "Return": 2} | 8 | 30 | 8 | ["range", "mean", "std", "std", "mean_arr.append", "std_arr.append", "np.array", "np.array"] | 0 | [] | The function (compute_individual_mean_std) defined within the public class called MultiChDloader, that inherit another class.The function start at line 700 and ends at 729. It contains 24 lines of code and it has a cyclomatic complexity of 5. The function does not take any parameters, and this function return a value. ... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | compute_mean_std | def compute_mean_std(self, allow_for_validation_data=False):"""Note that we must compute this only for training data."""assert (self._is_train is True or allow_for_validation_data), "This is just allowed for training data"assert self._use_one_mu_std is True, "This is the only supported case"if self._input_idx is not No... | 10 | 59 | 2 | 466 | 0 | 731 | 801 | 731 | self,allow_for_validation_data | [] | Returns | {"Assign": 19, "Expr": 1, "If": 6, "Return": 2} | 17 | 71 | 17 | ["self.compute_individual_mean_std", "np.mean", "range", "np.sum", "np.linalg.norm", "np.std", "range", "reshape", "np.mean", "reshape", "np.std", "reshape", "np.std", "np.repeat", "np.repeat", "np.zeros_like", "self.compute_individual_mean_std"] | 0 | [] | The function (compute_mean_std) defined within the public class called MultiChDloader, that inherit another class.The function start at line 731 and ends at 801. It contains 59 lines of code and it has a cyclomatic complexity of 10. It takes 2 parameters, represented as [731.0], and this function return a value. It dec... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _get_random_hw | def _get_random_hw(self, h: int, w: int):"""Random starting position for the crop for the img with index `index`."""if h != self._img_sz:h_start = np.random.choice(h - self._img_sz)w_start = np.random.choice(w - self._img_sz)else:h_start = 0w_start = 0return h_start, w_start | 2 | 8 | 3 | 61 | 0 | 803 | 813 | 803 | self,h,w | [] | Returns | {"Assign": 4, "Expr": 1, "If": 1, "Return": 1} | 2 | 11 | 2 | ["np.random.choice", "np.random.choice"] | 0 | [] | The function (_get_random_hw) defined within the public class called MultiChDloader, that inherit another class.The function start at line 803 and ends at 813. It contains 8 lines of code and it has a cyclomatic complexity of 2. It takes 3 parameters, represented as [803.0], and this function return a value. It declare... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _get_img | def _get_img(self, index: Union[int, tuple[int, int]]):"""Loads an image.Crops the image such that cropped image has content."""img_tuples, noise_tuples = self._load_img(index)cropped_img_tuples = self._crop_imgs(index, *img_tuples, *noise_tuples)[:-1]cropped_noise_tuples = cropped_img_tuples[len(img_tuples) :]cropped_... | 1 | 6 | 2 | 73 | 0 | 815 | 824 | 815 | self,index | [] | Returns | {"Assign": 4, "Expr": 1, "Return": 1} | 4 | 10 | 4 | ["self._load_img", "self._crop_imgs", "len", "len"] | 0 | [] | The function (_get_img) defined within the public class called MultiChDloader, that inherit another class.The function start at line 815 and ends at 824. It contains 6 lines of code and it has a cyclomatic complexity of 1. It takes 2 parameters, represented as [815.0], and this function return a value. It declares 4.0 ... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | replace_with_empty_patch | def replace_with_empty_patch(self, img_tuples):"""Replaces the content of one of the channels with background"""empty_index = self._empty_patch_fetcher.sample()empty_img_tuples, empty_img_noise_tuples = self._get_img(empty_index)assert (len(empty_img_noise_tuples) == 0), "Noise is not supported with empty patch replace... | 3 | 13 | 2 | 85 | 0 | 826 | 841 | 826 | self,img_tuples | [] | Returns | {"Assign": 3, "Expr": 3, "For": 1, "If": 1, "Return": 1} | 8 | 16 | 8 | ["self._empty_patch_fetcher.sample", "self._get_img", "len", "range", "len", "final_img_tuples.append", "final_img_tuples.append", "tuple"] | 0 | [] | The function (replace_with_empty_patch) defined within the public class called MultiChDloader, that inherit another class.The function start at line 826 and ends at 841. It contains 13 lines of code and it has a cyclomatic complexity of 3. It takes 2 parameters, represented as [826.0], and this function return a value.... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_mean_std_for_input | def get_mean_std_for_input(self):mean, std = self.get_mean_std()return mean["input"], std["input"] | 1 | 3 | 1 | 24 | 0 | 843 | 845 | 843 | self | [] | Returns | {"Assign": 1, "Return": 1} | 1 | 3 | 1 | ["self.get_mean_std"] | 0 | [] | The function (get_mean_std_for_input) defined within the public class called MultiChDloader, that inherit another class.The function start at line 843 and ends at 845. It contains 3 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It dec... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _compute_target | def _compute_target(self, img_tuples, alpha):if self._tar_idx_list is not None and isinstance(self._tar_idx_list, int):target = img_tuples[self._tar_idx_list]else:if self._tar_idx_list is not None:assert isinstance(self._tar_idx_list, list) or isinstance(self._tar_idx_list, tuple)img_tuples = [img_tuples[i] for i in se... | 6 | 11 | 3 | 90 | 0 | 847 | 858 | 847 | self,img_tuples,alpha | [] | Returns | {"Assign": 3, "If": 2, "Return": 1} | 4 | 12 | 4 | ["isinstance", "isinstance", "isinstance", "np.concatenate"] | 0 | [] | The function (_compute_target) defined within the public class called MultiChDloader, that inherit another class.The function start at line 847 and ends at 858. It contains 11 lines of code and it has a cyclomatic complexity of 6. It takes 3 parameters, represented as [847.0], and this function return a value. It decla... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _compute_input_with_alpha | def _compute_input_with_alpha(self, img_tuples, alpha_list):# assert self._normalized_input is True, "normalization should happen here"if self._input_idx is not None:inp = img_tuples[self._input_idx]else:inp = 0for alpha, img in zip(alpha_list, img_tuples):inp += img * alphaif self._normalized_input is False:return inp... | 6 | 24 | 3 | 166 | 0 | 860 | 888 | 860 | self,img_tuples,alpha_list | [] | Returns | {"Assign": 8, "AugAssign": 1, "For": 2, "If": 3, "Return": 2} | 10 | 29 | 10 | ["zip", "inp.astype", "self.get_mean_std_for_input", "mean.squeeze", "std.squeeze", "mean.reshape", "std.reshape", "range", "len", "inp.astype"] | 0 | [] | The function (_compute_input_with_alpha) defined within the public class called MultiChDloader, that inherit another class.The function start at line 860 and ends at 888. It contains 24 lines of code and it has a cyclomatic complexity of 6. It takes 3 parameters, represented as [860.0], and this function return a value... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _sample_alpha | def _sample_alpha(self):alpha_arr = []for i in range(self._num_channels):alpha_pos = np.random.rand()alpha = self._start_alpha_arr[i] + alpha_pos * (self._end_alpha_arr[i] - self._start_alpha_arr[i])alpha_arr.append(alpha)return alpha_arr | 2 | 9 | 1 | 62 | 0 | 890 | 898 | 890 | self | [] | Returns | {"Assign": 3, "Expr": 1, "For": 1, "Return": 1} | 3 | 9 | 3 | ["range", "np.random.rand", "alpha_arr.append"] | 0 | [] | The function (_sample_alpha) defined within the public class called MultiChDloader, that inherit another class.The function start at line 890 and ends at 898. It contains 9 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It declares 3.0... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _compute_input | def _compute_input(self, img_tuples):alpha = [1 / len(img_tuples) for _ in range(len(img_tuples))]if self._start_alpha_arr is not None:alpha = self._sample_alpha()inp = self._compute_input_with_alpha(img_tuples, alpha)if self._input_is_sum:inp = len(img_tuples) * inpreturn inp, alpha | 4 | 8 | 2 | 69 | 0 | 900 | 908 | 900 | self,img_tuples | [] | Returns | {"Assign": 4, "If": 2, "Return": 1} | 6 | 9 | 6 | ["len", "range", "len", "self._sample_alpha", "self._compute_input_with_alpha", "len"] | 0 | [] | The function (_compute_input) defined within the public class called MultiChDloader, that inherit another class.The function start at line 900 and ends at 908. It contains 8 lines of code and it has a cyclomatic complexity of 4. It takes 2 parameters, represented as [900.0], and this function return a value. It declare... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _get_index_from_valid_target_logic | def _get_index_from_valid_target_logic(self, index):if self._validtarget_rand_fract is not None:if np.random.rand() < self._validtarget_rand_fract:index = self._train_index_switcher.get_valid_target_index()else:index = self._train_index_switcher.get_invalid_target_index()return index | 3 | 7 | 2 | 50 | 0 | 910 | 916 | 910 | self,index | [] | Returns | {"Assign": 2, "If": 2, "Return": 1} | 3 | 7 | 3 | ["np.random.rand", "self._train_index_switcher.get_valid_target_index", "self._train_index_switcher.get_invalid_target_index"] | 0 | [] | The function (_get_index_from_valid_target_logic) defined within the public class called MultiChDloader, that inherit another class.The function start at line 910 and ends at 916. It contains 7 lines of code and it has a cyclomatic complexity of 3. It takes 2 parameters, represented as [910.0], and this function return... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _rotate2D | def _rotate2D(self, img_tuples, noise_tuples):img_kwargs = {}for i, img in enumerate(img_tuples):for k in range(len(img)):img_kwargs[f"img{i}_{k}"] = img[k]noise_kwargs = {}for i, nimg in enumerate(noise_tuples):for k in range(len(nimg)):noise_kwargs[f"noise{i}_{k}"] = nimg[k]keys = list(img_kwargs.keys()) + list(noise... | 12 | 36 | 3 | 283 | 0 | 918 | 958 | 918 | self,img_tuples,noise_tuples | [] | Returns | {"Assign": 8, "Expr": 5, "For": 6, "If": 2, "Return": 1} | 26 | 41 | 26 | ["enumerate", "range", "len", "enumerate", "range", "len", "list", "img_kwargs.keys", "list", "noise_kwargs.keys", "self._rotation_transform.add_targets", "self._rotation_transform", "enumerate", "len", "rotated_img_tuples.append", "rotated_img_tuples.append", "np.concatenate", "range", "len", "enumerate", "len", "rota... | 0 | [] | The function (_rotate2D) defined within the public class called MultiChDloader, that inherit another class.The function start at line 918 and ends at 958. It contains 36 lines of code and it has a cyclomatic complexity of 12. It takes 3 parameters, represented as [918.0], and this function return a value. It declares 2... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _rotate | def _rotate(self, img_tuples, noise_tuples):if self._5Ddata:return self._rotate3D(img_tuples, noise_tuples)else:return self._rotate2D(img_tuples, noise_tuples) | 2 | 5 | 3 | 34 | 0 | 960 | 965 | 960 | self,img_tuples,noise_tuples | [] | Returns | {"If": 1, "Return": 2} | 2 | 6 | 2 | ["self._rotate3D", "self._rotate2D"] | 0 | [] | The function (_rotate) defined within the public class called MultiChDloader, that inherit another class.The function start at line 960 and ends at 965. It contains 5 lines of code and it has a cyclomatic complexity of 2. It takes 3 parameters, represented as [960.0], and this function return a value. It declares 2.0 f... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | _rotate3D | def _rotate3D(self, img_tuples, noise_tuples):img_kwargs = {}# random flip in z directionflip_z = self._flipz_3D and np.random.rand() < 0.5for i, img in enumerate(img_tuples):for j in range(self._depth3D):for k in range(len(img)):if flip_z:z_idx = self._depth3D - 1 - jelse:z_idx = jimg_kwargs[f"img{i}_{z_idx}_{k}"] = i... | 21 | 76 | 3 | 470 | 0 | 967 | 1,047 | 967 | self,img_tuples,noise_tuples | [] | Returns | {"Assign": 15, "Expr": 7, "For": 10, "If": 4, "Return": 1} | 39 | 81 | 39 | ["np.random.rand", "enumerate", "range", "range", "len", "enumerate", "range", "range", "len", "list", "img_kwargs.keys", "list", "noise_kwargs.keys", "self._rotation_transform.add_targets", "self._rotation_transform", "enumerate", "len", "rotated_img_tuples.append", "np.concatenate", "range", "range", "len", "temp_arr... | 0 | [] | The function (_rotate3D) defined within the public class called MultiChDloader, that inherit another class.The function start at line 967 and ends at 1047. It contains 76 lines of code and it has a cyclomatic complexity of 21. It takes 3 parameters, represented as [967.0], and this function return a value. It declares ... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | get_uncorrelated_img_tuples | def get_uncorrelated_img_tuples(self, index):"""Content of channels like actin and nuclei is "correlated" in itsrespective location, this function allows to pick channels' contentfrom different patches of the image to make it "uncorrelated"."""img_tuples, noise_tuples = self._get_img(index)assert len(noise_tuples) == 0... | 2 | 9 | 2 | 82 | 0 | 1,049 | 1,062 | 1,049 | self,index | [] | Returns | {"Assign": 4, "Expr": 2, "For": 1, "Return": 1} | 8 | 14 | 8 | ["self._get_img", "len", "range", "len", "np.random.randint", "len", "self._get_img", "img_tuples.append"] | 0 | [] | The function (get_uncorrelated_img_tuples) defined within the public class called MultiChDloader, that inherit another class.The function start at line 1049 and ends at 1062. It contains 9 lines of code and it has a cyclomatic complexity of 2. It takes 2 parameters, represented as [1049.0], and this function return a v... |
CAREamics_careamics | MultiChDloader | public | 0 | 1 | __getitem__ | def __getitem__(self, index: Union[int, tuple[int, int]]) -> tuple[np.ndarray, np.ndarray]:# Vera: input can be both real microscopic image and two separate channels that are summed in the codeif self._train_index_switcher is not None:index = self._get_index_from_valid_target_logic(index)if (self._uncorrelated_channels... | 14 | 36 | 2 | 277 | 0 | 1,064 | 1,121 | 1,064 | self,index | [] | tuple[np.ndarray, np.ndarray] | {"Assign": 13, "Expr": 2, "If": 9, "Return": 1} | 17 | 58 | 17 | ["self._get_index_from_valid_target_logic", "np.random.rand", "self.get_uncorrelated_img_tuples", "self._get_img", "np.random.rand", "self.replace_with_empty_patch", "self._rotate", "len", "np.sqrt", "self._compute_input", "len", "zip", "self._compute_target", "self.normalize_target", "output.append", "output.append", ... | 30 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3535398_idsia_brainstorm.brainstorm.structure.buffer_views_py.BufferView.__getitem__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3573634_xray7224_pypump.pypump.models.feed_py.Lists.__getitem__", "_.content.gdriv... | The function (__getitem__) defined within the public class called MultiChDloader, that inherit another class.The function start at line 1064 and ends at 1121. It contains 36 lines of code and it has a cyclomatic complexity of 14. It takes 2 parameters, represented as [1064.0] and does not return any value. It declares ... |
CAREamics_careamics | public | public | 0 | 0 | l2 | def l2(x):return np.sqrt(np.mean(np.array(x) ** 2)) | 1 | 2 | 1 | 24 | 0 | 13 | 14 | 13 | x | [] | Returns | {"Return": 1} | 3 | 2 | 3 | ["np.sqrt", "np.mean", "np.array"] | 2 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3953269_alisaifee_flask_limiter.tests.test_decorators_py.test_non_route_decoration_multiple_sequential_limits_per_request", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lv... | The function (l2) defined within the public class called public.The function start at line 13 and ends at 14. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It declares 3.0 functions, It has 3.0 functions called inside wh... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | __init__ | def __init__(self,data_config,fpath: str,load_data_fn=None,val_fraction=None,test_fraction=None,):assert (data_config.input_is_sum == True), "This dataset is designed for sum of images"self._img_sz = data_config.image_sizeself._enable_rotation = data_config.enable_rotation_augself._background_values = data_config.backg... | 9 | 36 | 6 | 215 | 0 | 18 | 61 | 18 | self,data_config,fpath,load_data_fn,val_fraction,test_fraction | [] | None | {"Assign": 9, "Expr": 2, "For": 3, "If": 3} | 10 | 44 | 10 | ["load_data_fn", "enumerate", "range", "len", "enumerate", "x.astype", "final_data_arr.append", "print", "len", "len"] | 8,182 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.15197461_googleapis_python_cloud_core.google.cloud._helpers.__init___py._LocalStack.__init__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.16798231_kapji_capital_gains_calculator.cgt_calc.exceptions_py.AmountMissi... | The function (__init__) defined within the public class called MultiCropDset.The function start at line 18 and ends at 61. It contains 36 lines of code and it has a cyclomatic complexity of 9. It takes 6 parameters, represented as [18.0] and does not return any value. It declares 10.0 functions, It has 10.0 functions c... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | get_max_val | def get_max_val(self):return self.max_val | 1 | 2 | 1 | 9 | 0 | 63 | 64 | 63 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 1 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.multifile_dataset_py.MultiFileDset.get_max_val"] | The function (get_max_val) defined within the public class called MultiCropDset.The function start at line 63 and ends at 64. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It has 1.0 function calling this function which ... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | compute_mean_std | def compute_mean_std(self):mean_tar_dict = defaultdict(list)std_tar_dict = defaultdict(list)mean_inp = []std_inp = []for _ in range(30000):crops = []for ch_idx in range(len(self._data)):crop = self.sample_crop(ch_idx)mean_tar_dict[ch_idx].append(np.mean(crop))std_tar_dict[ch_idx].append(np.std(crop))crops.append(crop)i... | 5 | 28 | 1 | 293 | 0 | 66 | 98 | 66 | self | [] | Returns | {"Assign": 14, "AugAssign": 1, "Expr": 7, "For": 4, "Return": 1} | 35 | 33 | 35 | ["defaultdict", "defaultdict", "range", "range", "len", "self.sample_crop", "append", "np.mean", "append", "np.std", "crops.append", "mean_inp.append", "np.mean", "std_inp.append", "np.std", "defaultdict", "defaultdict", "len", "range", "append", "np.mean", "append", "l2", "reshape", "np.array", "reshape", "np.array", ... | 0 | [] | The function (compute_mean_std) defined within the public class called MultiCropDset.The function start at line 66 and ends at 98. It contains 28 lines of code and it has a cyclomatic complexity of 5. The function does not take any parameters, and this function return a value. It declares 35.0 functions, and It has 35... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | set_mean_std | def set_mean_std(self, mean_dict, std_dict):self._data_mean = mean_dictself._data_std = std_dict | 1 | 3 | 3 | 19 | 0 | 100 | 102 | 100 | self,mean_dict,std_dict | [] | None | {"Assign": 2} | 0 | 3 | 0 | [] | 0 | [] | The function (set_mean_std) defined within the public class called MultiCropDset.The function start at line 100 and ends at 102. It contains 3 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [100.0] and does not return any value.. |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | get_mean_std | def get_mean_std(self):return self._data_mean, self._data_std | 1 | 2 | 1 | 13 | 0 | 104 | 105 | 104 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 1 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.95053985_CAREamics_careamics.src.careamics.lvae_training.dataset.multifile_dataset_py.MultiFileDset.get_mean_std"] | The function (get_mean_std) defined within the public class called MultiCropDset.The function start at line 104 and ends at 105. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It has 1.0 function calling this function whi... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | get_num_frames | def get_num_frames(self):return len(self._data) | 1 | 2 | 1 | 12 | 0 | 107 | 108 | 107 | self | [] | Returns | {"Return": 1} | 1 | 2 | 1 | ["len"] | 0 | [] | The function (get_num_frames) defined within the public class called MultiCropDset.The function start at line 107 and ends at 108. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value. It declare 1.0 function, and It has 1.0 fu... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | crop_probablities | def crop_probablities(self, ch_idx):sizes = np.array([np.prod(x.shape) for x in self._data[ch_idx]])return sizes / sizes.sum() | 2 | 3 | 2 | 41 | 0 | 111 | 113 | 111 | self,ch_idx | [] | Returns | {"Assign": 1, "Return": 1} | 3 | 3 | 3 | ["np.array", "np.prod", "sizes.sum"] | 0 | [] | The function (crop_probablities) defined within the public class called MultiCropDset.The function start at line 111 and ends at 113. It contains 3 lines of code and it has a cyclomatic complexity of 2. It takes 2 parameters, represented as [111.0], and this function return a value. It declares 3.0 functions, and It h... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | sample_crop | def sample_crop(self, ch_idx):idx = Nonecount = 0while idx is None:count += 1idx = np.random.choice(len(self._data[ch_idx]), p=self.crop_probablities(ch_idx))data = self._data[ch_idx][idx]if data.shape[0] >= self._img_sz[0] and data.shape[1] >= self._img_sz[1]:h = np.random.randint(0, data.shape[0] - self._img_sz[0])w ... | 5 | 18 | 2 | 178 | 0 | 115 | 133 | 115 | self,ch_idx | [] | Returns | {"Assign": 7, "AugAssign": 1, "If": 2, "Return": 2, "While": 1} | 6 | 19 | 6 | ["np.random.choice", "len", "self.crop_probablities", "np.random.randint", "np.random.randint", "ValueError"] | 0 | [] | The function (sample_crop) defined within the public class called MultiCropDset.The function start at line 115 and ends at 133. It contains 18 lines of code and it has a cyclomatic complexity of 5. It takes 2 parameters, represented as [115.0], and this function return a value. It declares 6.0 functions, and It has 6.... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | len_per_channel | def len_per_channel(self, ch_idx):return np.sum([np.prod(x.shape) for x in self._data[ch_idx]]) / np.prod(self._img_sz) | 2 | 4 | 2 | 41 | 0 | 135 | 138 | 135 | self,ch_idx | [] | Returns | {"Return": 1} | 3 | 4 | 3 | ["np.sum", "np.prod", "np.prod"] | 0 | [] | The function (len_per_channel) defined within the public class called MultiCropDset.The function start at line 135 and ends at 138. It contains 4 lines of code and it has a cyclomatic complexity of 2. It takes 2 parameters, represented as [135.0], and this function return a value. It declares 3.0 functions, and It has... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | imgs_for_patch | def imgs_for_patch(self):return [self.sample_crop(ch_idx) for ch_idx in range(len(self._data))] | 2 | 2 | 1 | 26 | 0 | 140 | 141 | 140 | self | [] | Returns | {"Return": 1} | 3 | 2 | 3 | ["self.sample_crop", "range", "len"] | 0 | [] | The function (imgs_for_patch) defined within the public class called MultiCropDset.The function start at line 140 and ends at 141. It contains 2 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It declares 3.0 functions, and It has 3.0 ... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | __len__ | def __len__(self):len_per_channel = [self.len_per_channel(ch_idx) for ch_idx in range(len(self._data))]return int(np.max(len_per_channel)) | 2 | 5 | 1 | 37 | 0 | 143 | 147 | 143 | self | [] | Returns | {"Assign": 1, "Return": 1} | 5 | 5 | 5 | ["self.len_per_channel", "range", "len", "int", "np.max"] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3576232_vmware_liota.packages.examples.kura.kura_integrate_iotcc_py.sub_callback", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3665918_alvinwan_neural_backed_decision_trees.nbdt.data.imagenet_py._TinyImagenet200Va... | The function (__len__) defined within the public class called MultiCropDset.The function start at line 143 and ends at 147. It contains 5 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It declares 5.0 functions, It has 5.0 functions ca... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | _rotate | def _rotate(self, img_tuples):return self._rotate2D(img_tuples) | 1 | 2 | 2 | 14 | 0 | 149 | 150 | 149 | self,img_tuples | [] | Returns | {"Return": 1} | 1 | 2 | 1 | ["self._rotate2D"] | 0 | [] | The function (_rotate) defined within the public class called MultiCropDset.The function start at line 149 and ends at 150. It contains 2 lines of code and it has a cyclomatic complexity of 1. It takes 2 parameters, represented as [149.0], and this function return a value. It declare 1.0 function, and It has 1.0 funct... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | _rotate2D | def _rotate2D(self, img_tuples):img_kwargs = {}for i, img in enumerate(img_tuples):for k in range(len(img)):img_kwargs[f"img{i}_{k}"] = img[k]keys = list(img_kwargs.keys())self._rotation_transform.add_targets({k: "image" for k in keys})rot_dic = self._rotation_transform(image=img_tuples[0][0], **img_kwargs)rotated_img_... | 7 | 19 | 2 | 160 | 0 | 152 | 173 | 152 | self,img_tuples | [] | Returns | {"Assign": 5, "Expr": 3, "For": 3, "If": 1, "Return": 1} | 14 | 22 | 14 | ["enumerate", "range", "len", "list", "img_kwargs.keys", "self._rotation_transform.add_targets", "self._rotation_transform", "enumerate", "len", "rotated_img_tuples.append", "rotated_img_tuples.append", "np.concatenate", "range", "len"] | 0 | [] | The function (_rotate2D) defined within the public class called MultiCropDset.The function start at line 152 and ends at 173. It contains 19 lines of code and it has a cyclomatic complexity of 7. It takes 2 parameters, represented as [152.0], and this function return a value. It declares 14.0 functions, and It has 14.... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | _compute_input | def _compute_input(self, imgs):inp = 0for img in imgs:inp += imginp = inp[None]inp = (inp - self._data_mean["input"]) / (self._data_std["input"])return inp | 2 | 7 | 2 | 47 | 0 | 175 | 182 | 175 | self,imgs | [] | Returns | {"Assign": 3, "AugAssign": 1, "For": 1, "Return": 1} | 0 | 8 | 0 | [] | 0 | [] | The function (_compute_input) defined within the public class called MultiCropDset.The function start at line 175 and ends at 182. It contains 7 lines of code and it has a cyclomatic complexity of 2. It takes 2 parameters, represented as [175.0], and this function return a value.. |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | _compute_target | def _compute_target(self, imgs):imgs = np.stack(imgs)target = (imgs - self._data_mean["target"]) / (self._data_std["target"])return target | 1 | 4 | 2 | 38 | 0 | 184 | 187 | 184 | self,imgs | [] | Returns | {"Assign": 2, "Return": 1} | 1 | 4 | 1 | ["np.stack"] | 0 | [] | The function (_compute_target) defined within the public class called MultiCropDset.The function start at line 184 and ends at 187. It contains 4 lines of code and it has a cyclomatic complexity of 1. It takes 2 parameters, represented as [184.0], and this function return a value. It declare 1.0 function, and It has 1... |
CAREamics_careamics | MultiCropDset | public | 0 | 0 | __getitem__ | def __getitem__(self, idx):imgs = self.imgs_for_patch()if self._enable_rotation:imgs = self._rotate(imgs)inp = self._compute_input(imgs)target = self._compute_target(imgs)return inp, target | 2 | 7 | 2 | 47 | 0 | 189 | 196 | 189 | self,idx | [] | Returns | {"Assign": 4, "If": 1, "Return": 1} | 4 | 8 | 4 | ["self.imgs_for_patch", "self._rotate", "self._compute_input", "self._compute_target"] | 30 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3535398_idsia_brainstorm.brainstorm.structure.buffer_views_py.BufferView.__getitem__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3573634_xray7224_pypump.pypump.models.feed_py.Lists.__getitem__", "_.content.gdriv... | The function (__getitem__) defined within the public class called MultiCropDset.The function start at line 189 and ends at 196. It contains 7 lines of code and it has a cyclomatic complexity of 2. It takes 2 parameters, represented as [189.0], and this function return a value. It declares 4.0 functions, It has 4.0 func... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __init__ | def __init__(self, data_arr1, data_arr2, paths_data1=None, paths_data2=None):assert len(data_arr1) == len(data_arr2)self.paths1 = paths_data1self.paths2 = paths_data2self._data = []for i in range(len(data_arr1)):assert data_arr1[i].shape == data_arr2[i].shapeassert (len(data_arr1[i].shape) == 3), f"Each element in data... | 2 | 15 | 5 | 123 | 0 | 18 | 33 | 18 | self,data_arr1,data_arr2,paths_data1,paths_data2 | [] | None | {"Assign": 3, "Expr": 1, "For": 1} | 7 | 16 | 7 | ["len", "len", "range", "len", "len", "self._data.append", "np.concatenate"] | 8,182 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.15197461_googleapis_python_cloud_core.google.cloud._helpers.__init___py._LocalStack.__init__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.16798231_kapji_capital_gains_calculator.cgt_calc.exceptions_py.AmountMissi... | The function (__init__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 18 and ends at 33. It contains 15 lines of code and it has a cyclomatic complexity of 2. It takes 5 parameters, represented as [18.0] and does not return any value. It declares 7.0 functi... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __len__ | def __len__(self):n = 0for x in self._data:n += x.shape[0]return n | 2 | 5 | 1 | 25 | 0 | 35 | 39 | 35 | self | [] | Returns | {"Assign": 1, "AugAssign": 1, "For": 1, "Return": 1} | 0 | 5 | 0 | [] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3576232_vmware_liota.packages.examples.kura.kura_integrate_iotcc_py.sub_callback", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3665918_alvinwan_neural_backed_decision_trees.nbdt.data.imagenet_py._TinyImagenet200Va... | The function (__len__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 35 and ends at 39. It contains 5 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It has 3.0 functions ca... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __getitem__ | def __getitem__(self, idx):n = 0for dataidx, x in enumerate(self._data):if idx < n + x.shape[0]:if self.paths1 is None:return x[idx - n], Noneelse:return x[idx - n], (self.paths1[dataidx], self.paths2[dataidx])n += x.shape[0]raise IndexError("Index out of range") | 4 | 10 | 2 | 88 | 0 | 41 | 50 | 41 | self,idx | [] | Returns | {"Assign": 1, "AugAssign": 1, "For": 1, "If": 2, "Return": 2} | 2 | 10 | 2 | ["enumerate", "IndexError"] | 30 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3535398_idsia_brainstorm.brainstorm.structure.buffer_views_py.BufferView.__getitem__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3573634_xray7224_pypump.pypump.models.feed_py.Lists.__getitem__", "_.content.gdriv... | The function (__getitem__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 41 and ends at 50. It contains 10 lines of code and it has a cyclomatic complexity of 4. It takes 2 parameters, represented as [41.0], and this function return a value. It declares 2.0... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __init__ | def __init__(self, data_arr, paths=None):self.paths = pathsself._data = data_arr | 1 | 3 | 3 | 21 | 0 | 58 | 61 | 58 | self,data_arr1,data_arr2,paths_data1,paths_data2 | [] | None | {"Assign": 3, "Expr": 1, "For": 1} | 7 | 16 | 7 | ["len", "len", "range", "len", "len", "self._data.append", "np.concatenate"] | 8,182 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.15197461_googleapis_python_cloud_core.google.cloud._helpers.__init___py._LocalStack.__init__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.16798231_kapji_capital_gains_calculator.cgt_calc.exceptions_py.AmountMissi... | The function (__init__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 58 and ends at 61. It contains 3 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [58.0] and does not return any value. It declares 7.0 functio... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __len__ | def __len__(self):n = 0for x in self._data:n += x.shape[0]return n | 2 | 5 | 1 | 25 | 0 | 63 | 67 | 35 | self | [] | Returns | {"Assign": 1, "AugAssign": 1, "For": 1, "Return": 1} | 0 | 5 | 0 | [] | 3 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3576232_vmware_liota.packages.examples.kura.kura_integrate_iotcc_py.sub_callback", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3665918_alvinwan_neural_backed_decision_trees.nbdt.data.imagenet_py._TinyImagenet200Va... | The function (__len__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 63 and ends at 67. It contains 5 lines of code and it has a cyclomatic complexity of 2. The function does not take any parameters, and this function return a value. It has 3.0 functions ca... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __getitem__ | def __getitem__(self, idx):n = 0for dataidx, x in enumerate(self._data):if idx < n + x.shape[0]:if self.paths is None:return x[idx - n], Noneelse:return x[idx - n], (self.paths[dataidx])n += x.shape[0]raise IndexError("Index out of range") | 4 | 10 | 2 | 81 | 0 | 69 | 78 | 69 | self,idx | [] | Returns | {"Assign": 1, "AugAssign": 1, "For": 1, "If": 2, "Return": 2} | 2 | 10 | 2 | ["enumerate", "IndexError"] | 30 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3535398_idsia_brainstorm.brainstorm.structure.buffer_views_py.BufferView.__getitem__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3573634_xray7224_pypump.pypump.models.feed_py.Lists.__getitem__", "_.content.gdriv... | The function (__getitem__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 69 and ends at 78. It contains 10 lines of code and it has a cyclomatic complexity of 4. It takes 2 parameters, represented as [69.0], and this function return a value. It declares 2.0... |
CAREamics_careamics | TwoChannelData | public | 0 | 1 | __init__ | def __init__(self,preloaded_data: NDArray,data_config: MicroSplitDataConfig,fpath: str,load_data_fn: Callable,val_fraction=None,test_fraction=None,):self._preloaded_data = preloaded_datasuper().__init__(data_config,fpath,load_data_fn=load_data_fn,val_fraction=val_fraction,test_fraction=test_fraction,) | 1 | 17 | 7 | 58 | 0 | 82 | 98 | 82 | self,data_arr1,data_arr2,paths_data1,paths_data2 | [] | None | {"Assign": 3, "Expr": 1, "For": 1} | 7 | 16 | 7 | ["len", "len", "range", "len", "len", "self._data.append", "np.concatenate"] | 8,182 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.15197461_googleapis_python_cloud_core.google.cloud._helpers.__init___py._LocalStack.__init__", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.16798231_kapji_capital_gains_calculator.cgt_calc.exceptions_py.AmountMissi... | The function (__init__) defined within the public class called TwoChannelData, that inherit another class.The function start at line 82 and ends at 98. It contains 17 lines of code and it has a cyclomatic complexity of 1. It takes 7 parameters, represented as [82.0] and does not return any value. It declares 7.0 functi... |
CAREamics_careamics | SingleFileLCDset | public | 0 | 1 | data_path | def data_path(self):return self._fpath | 1 | 2 | 1 | 9 | 0 | 101 | 102 | 101 | self | [] | Returns | {"Return": 1} | 0 | 2 | 0 | [] | 0 | [] | The function (data_path) defined within the public class called SingleFileLCDset, that inherit another class.The function start at line 101 and ends at 102. It contains 2 lines of code and it has a cyclomatic complexity of 1. The function does not take any parameters, and this function return a value.. |
CAREamics_careamics | SingleFileLCDset | public | 0 | 1 | rm_bkground_set_max_val_and_upperclip_data | def rm_bkground_set_max_val_and_upperclip_data(self, max_val, datasplit_type):pass | 1 | 2 | 3 | 10 | 0 | 104 | 105 | 104 | self,max_val,datasplit_type | [] | None | {} | 0 | 2 | 0 | [] | 0 | [] | The function (rm_bkground_set_max_val_and_upperclip_data) defined within the public class called SingleFileLCDset, that inherit another class.The function start at line 104 and ends at 105. It contains 2 lines of code and it has a cyclomatic complexity of 1. It takes 3 parameters, represented as [104.0] and does not re... |
CAREamics_careamics | SingleFileLCDset | public | 0 | 1 | load_data | def load_data(self,data_config: MicroSplitDataConfig,datasplit_type: DataSplitType,load_data_fn: Callable,val_fraction=None,test_fraction=None,allow_generation=None,):self._data = self._preloaded_dataassert "channel_1" not in data_config or isinstance(data_config.channel_1, str)assert "channel_2" not in data_config or ... | 4 | 14 | 7 | 85 | 0 | 107 | 120 | 107 | self,data_config,datasplit_type,load_data_fn,val_fraction,test_fraction,allow_generation | [] | None | {"Assign": 1, "Expr": 1} | 4 | 14 | 4 | ["isinstance", "isinstance", "isinstance", "self._loaded_data_preprocessing"] | 12 | ["_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3919742_opendatacube_datacube_stats.datacube_stats.main_py.load_process_save_chunk", "_.content.gdrive.MyDrive.Phd_Thesis.Dataset_Creation.Output.Cloned_Repo_3.3959435_kscsdk_ksc_sdk_python.kscore.session_py.Session.get_data", "_.content.gdrive... | The function (load_data) defined within the public class called SingleFileLCDset, that inherit another class.The function start at line 107 and ends at 120. It contains 14 lines of code and it has a cyclomatic complexity of 4. It takes 7 parameters, represented as [107.0] and does not return any value. It declares 4.0 ... |
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